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Conserved domains on  [gi|970049944|ref|XP_015086490|]
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uncharacterized protein LOC107029567 isoform X2 [Solanum pennellii]

Protein Classification

DUF4283 domain-containing protein; zinc finger protein( domain architecture ID 10342511)

DUF4283 domain-containing protein| zinc finger protein is a DUF3669 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ZF-HD_dimer pfam04770
ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, ...
 571-625 9.54e-39

ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger.


:

Pssm-ID: 398439  Cd Length: 55  Bit Score: 137.38  E-value: 9.54e-39
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 970049944  571 SIRYRECLKNHAASMGGHALDGCGEFMPSGEEGTPGALKCAACNCHQNFHRKEID 625
Cdd:pfam04770   1 NVRYRECLRNHAASIGGHAVDGCGEFMPSGEEGTPEALKCAACGCHRNFHRREIE 55
DUF4283 super family cl16623
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 324-407 9.17e-14

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


The actual alignment was detected with superfamily member pfam14111:

Pssm-ID: 464086  Cd Length: 145  Bit Score: 69.22  E-value: 9.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970049944  324 ESLVSDYKLTLLGNFSYKRPKMKEIRADFKAQNPLSGQVKIRNCSSRQVLILFTNEEDYYTVLYKKAIIVAGVLMQISWS 403
Cdd:pfam14111   3 EELKEELKLCLVGRFTGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRW 82


                  ....
gi 970049944  404 SPDF 407
Cdd:pfam14111  83 SPDF 86
DUF4283 super family cl16623
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 43-125 9.25e-07

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


The actual alignment was detected with superfamily member pfam14111:

Pssm-ID: 464086  Cd Length: 145  Bit Score: 49.18  E-value: 9.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970049944   43 SMVAVCKLTMVGKFFIPKPKMTKIRASFQAKLSLKGVAKIRSYDSYHVFIDFTAEEDYQSVLLKERVVVAGAIMEVFQWT 122
Cdd:pfam14111   4 ELKEELKLCLVGRFTGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRWS 83


                  ...
gi 970049944  123 PEF 125
Cdd:pfam14111  84 PDF 86
 
Name Accession Description Interval E-value
ZF-HD_dimer pfam04770
ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, ...
 571-625 9.54e-39

ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger.


Pssm-ID: 398439  Cd Length: 55  Bit Score: 137.38  E-value: 9.54e-39
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 970049944  571 SIRYRECLKNHAASMGGHALDGCGEFMPSGEEGTPGALKCAACNCHQNFHRKEID 625
Cdd:pfam04770   1 NVRYRECLRNHAASIGGHAVDGCGEFMPSGEEGTPEALKCAACGCHRNFHRREIE 55
ZF_HD_prot_N TIGR01566
ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue ...
 573-624 9.89e-29

ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565.


Pssm-ID: 130629  Cd Length: 53  Bit Score: 108.79  E-value: 9.89e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 970049944  573 RYRECLKNHAASMGGHALDGCGEFMP-SGEEGTPGALKCAACNCHQNFHRKEI 624
Cdd:TIGR01566   1 LYKECLKNHAASIGGHALDGCGEFMPsSGEEGDPESLTCAACGCHRNFHRKEP 53
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 324-407 9.17e-14

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 69.22  E-value: 9.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970049944  324 ESLVSDYKLTLLGNFSYKRPKMKEIRADFKAQNPLSGQVKIRNCSSRQVLILFTNEEDYYTVLYKKAIIVAGVLMQISWS 403
Cdd:pfam14111   3 EELKEELKLCLVGRFTGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRW 82


                  ....
gi 970049944  404 SPDF 407
Cdd:pfam14111  83 SPDF 86
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 43-125 9.25e-07

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 49.18  E-value: 9.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970049944   43 SMVAVCKLTMVGKFFIPKPKMTKIRASFQAKLSLKGVAKIRSYDSYHVFIDFTAEEDYQSVLLKERVVVAGAIMEVFQWT 122
Cdd:pfam14111   4 ELKEELKLCLVGRFTGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRWS 83


                  ...
gi 970049944  123 PEF 125
Cdd:pfam14111  84 PDF 86
 
Name Accession Description Interval E-value
ZF-HD_dimer pfam04770
ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, ...
 571-625 9.54e-39

ZF-HD protein dimerization region; This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger.


Pssm-ID: 398439  Cd Length: 55  Bit Score: 137.38  E-value: 9.54e-39
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 970049944  571 SIRYRECLKNHAASMGGHALDGCGEFMPSGEEGTPGALKCAACNCHQNFHRKEID 625
Cdd:pfam04770   1 NVRYRECLRNHAASIGGHAVDGCGEFMPSGEEGTPEALKCAACGCHRNFHRREIE 55
ZF_HD_prot_N TIGR01566
ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue ...
 573-624 9.89e-29

ZF-HD homeobox protein Cys/His-rich dimerization domain; This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565.


Pssm-ID: 130629  Cd Length: 53  Bit Score: 108.79  E-value: 9.89e-29
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 970049944  573 RYRECLKNHAASMGGHALDGCGEFMP-SGEEGTPGALKCAACNCHQNFHRKEI 624
Cdd:TIGR01566   1 LYKECLKNHAASIGGHALDGCGEFMPsSGEEGDPESLTCAACGCHRNFHRKEP 53
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 324-407 9.17e-14

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 69.22  E-value: 9.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970049944  324 ESLVSDYKLTLLGNFSYKRPKMKEIRADFKAQNPLSGQVKIRNCSSRQVLILFTNEEDYYTVLYKKAIIVAGVLMQISWS 403
Cdd:pfam14111   3 EELKEELKLCLVGRFTGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRW 82


                  ....
gi 970049944  404 SPDF 407
Cdd:pfam14111  83 SPDF 86
DUF4283 pfam14111
Domain of unknown function (DUF4283); This domain family is found in plants, and is ...
 43-125 9.25e-07

Domain of unknown function (DUF4283); This domain family is found in plants, and is approximately 100 amino acids in length. Considering the very diverse range of other domains it is associated with it is possible that this domain is a binding/guiding region. There are two highly conserved tryptophan residues.


Pssm-ID: 464086  Cd Length: 145  Bit Score: 49.18  E-value: 9.25e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 970049944   43 SMVAVCKLTMVGKFFIPKPKMTKIRASFQAKLSLKGVAKIRSYDSYHVFIDFTAEEDYQSVLLKERVVVAGAIMEVFQWT 122
Cdd:pfam14111   4 ELKEELKLCLVGRFTGKVPSLGAIRRVLARQWGLGGGVKIKELGDGYFLFRFPSEEDLERVLSKGPWLIGNVPMLLQRWS 83


                  ...
gi 970049944  123 PEF 125
Cdd:pfam14111  84 PDF 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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