|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
632-1301 |
2.51e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.19 E-value: 2.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 632 DDKIRLLEEQLQH--EISNKMEEFKILNDQNKALKLEVQ--KLQTLVSE-QPNKDVVEQMEKCIQEKDEKLKTVEELLET 706
Cdd:TIGR02168 192 EDILNELERQLKSleRQAEKAERYKELKAELRELELALLvlRLEELREElEELQEELKEAEEELEELTAELQELEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 707 GLIQVATKEEELNAIRTENSSLTKEVQDLKA-KQNDQVSFASLVEELKkvihEKDGKIKSVEELLEAELLKVANKEKTVQ 785
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQqKQILRERLANLERQLE----ELEAQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 786 DLKQEIKALKEEIGNVQLEKAQQLS----ITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESL- 860
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESrleeLEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELl 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 861 --------KAHVQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDL---SSKTKLLQDVQDENKLFKSQ 929
Cdd:TIGR02168 428 kkleeaelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELaqlQARLDSLERLQENLEGFSEG 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 930 IEQLKQQNYQQASSFPPHEELLKVISEREKEISG---------LWNELDSLKDAVEHQRKKNN-----------DLREKN 989
Cdd:TIGR02168 508 VKALLKNQSGLSGILGVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFLKQNELgrvtflpldsiKGTEIQ 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 990 WEAMEALASTEKMLQ--DKVNKTSKERQ-------QQVEAVE--LEAKEVLKKLFPKVSVPSnlsysewLHGFEKKAKEC 1058
Cdd:TIGR02168 588 GNDREILKNIEGFLGvaKDLVKFDPKLRkalsyllGGVLVVDdlDNALELAKKLRPGYRIVT-------LDGDLVRPGGV 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1059 MAGTSGSEEVKVLEHK--LKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFT 1136
Cdd:TIGR02168 661 ITGGSAKTNSSILERRreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1137 SSEQELERLRRENKDIENLRREREHLEMELEKAEmerstyvTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLN 1216
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAE-------EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1217 ETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVN 1296
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
....*
gi 966954983 1297 QQLTK 1301
Cdd:TIGR02168 894 SELEE 898
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
421-1223 |
3.05e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.26 E-value: 3.05e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 421 KLQQEEVQKK--NAEQAVTQLKVQLQEAERRW-------EEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTD 491
Cdd:TIGR02168 171 KERRKETERKleRTRENLDRLEDILNELERQLkslerqaEKAERYKELKAELRELELALLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 492 tLVSKQQLEQRLMQLMESEQKRVNKE-ESLQMQVQDILEQNEALKAQIQQFHSQIAAQtsaSVLAEELHKVIAEKDKQIK 570
Cdd:TIGR02168 251 -AEEELEELTAELQELEEKLEELRLEvSELEEEIEELQKELYALANEISRLEQQKQIL---RERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 571 QTEDSLANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKM 650
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 651 EEFKILNDQNKALKLEVQKLQTLVSEQPNKDV---VEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSS 727
Cdd:TIGR02168 407 ARLERLEDRRERLQQEIEELLKKLEEAELKELqaeLEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 728 LTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKE------------KTVQDLKQEIKALK 795
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEaalggrlqavvvENLNAAKKAIAFLK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 796 E-EIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWL------QDLQEENESLKAHVQEVA 868
Cdd:TIGR02168 567 QnELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvDDLDNALELAKKLRPGYR 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 869 QHNL------KEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQAS 942
Cdd:TIGR02168 647 IVTLdgdlvrPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 943 SFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQ---QVE 1019
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAlreALD 806
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1020 AVELEAKEVLKKLFPKVSVPSNLSysewlhgFEKKAKECMAGTSgSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAEt 1099
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLE-------RRIAATERRLEDL-EEQIEELSEDIESLAAEIEELEELIEELESELEA- 877
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1100 egiLQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIEN------------LRREREHLEMELE 1167
Cdd:TIGR02168 878 ---LLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELrleglevridnlQERLSEEYSLTLE 954
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966954983 1168 KAEMERSTYVTEVRELKDLLTELQKKLD-------DSYSEAVRQNEELNLLKAQ---LNETLTKLR 1223
Cdd:TIGR02168 955 EAEALENKIEDDEEEARRRLKRLENKIKelgpvnlAAIEEYEELKERYDFLTAQkedLTEAKETLE 1020
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
329-904 |
4.80e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 4.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 329 TLVHQLQEKDKLLAAVKEDAAAtkdrcKQLTQFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDY 408
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELE-----AELEELEAELEELEAELEELEAELAELEAELEELRLELEELE-LELEEAQAEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 409 ARLVNELTEKTGKLQQEEVQKKNAEQAvtqlKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSK 488
Cdd:COG1196 291 YELLAELARLEQDIARLEERRRELEER----LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 489 LTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQ 568
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 569 IKQTEDSLANERDHLTSKEEELKDIQNmnfLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQheISN 648
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAA---LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG--LRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 649 KMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSL 728
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 729 TKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQ 808
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 809 LSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEVSSASQFEELEI-V 887
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpD 761
|
570
....*....|....*..
gi 966954983 888 LKEKENELKRVEAMLKE 904
Cdd:COG1196 762 LEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
406-1250 |
9.11e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 9.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 406 QDYARLVNELTEKTGKLQQEEVQKKNAEQAvtQLKVQLQEAERRWEEVQSYIRKRTAEHEaaqqDLQSKFVAKENEVQSL 485
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRLEELREELE--ELQEELKEAEEELEELTAELQELEEKLE----ELRLEVSELEEEIEEL 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 486 HSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEK 565
Cdd:TIGR02168 287 QKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKL----------EELKEELESL 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 566 DKQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQsvyvkddkiRLLEEQLQHE 645
Cdd:TIGR02168 357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE---------RLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 646 ISNKMEEFKILNDQNKALKLEVQKLQTlvseqpNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN 725
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQE------ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 726 SSLTKEVQDLKAKQNDQVSFASLVEELKKViHEKDGKIKSVEELLEAELLKVANKEktvqDLKQEIKALKE-EIGNVQLE 804
Cdd:TIGR02168 502 EGFSEGVKALLKNQSGLSGILGVLSELISV-DEGYEAAIEAALGGRLQAVVVENLN----AAKKAIAFLKQnELGRVTFL 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 805 KAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWL------QDLQEENESLKAHVQEVAQHNL------ 872
Cdd:TIGR02168 577 PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvDDLDNALELAKKLRPGYRIVTLdgdlvr 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 873 KEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLK 952
Cdd:TIGR02168 657 PGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 953 VISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVlkkl 1032
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL---- 812
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1033 fpkvsvpsnlsysewlhgfekkakecmagtsgsEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQ 1112
Cdd:TIGR02168 813 ---------------------------------TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1113 EENKWKVKVDESHKTIKQMQSSFTSSEQELERLRrenKDIENLRREREHLEmelekaemerstyvTEVRELKDLLTELQK 1192
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLR---SELEELSEELRELE--------------SKRSELRRELEELRE 922
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966954983 1193 KLDDSyseavrqNEELNLLKAQLNETLTKLRTEQN--------ERQKVAGDLHKAQQSLELIQSKI 1250
Cdd:TIGR02168 923 KLAQL-------ELRLEGLEVRIDNLQERLSEEYSltleeaeaLENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
399-936 |
4.40e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 4.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 399 AELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 478
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 479 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 558
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 559 HKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLL 638
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 639 EEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEkLKTVEELLETgLIQVATKEEEL 718
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 719 NAIRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSV---------EELLEAELLKVANKEKTVQDLKQ 789
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIgaavdlvasDLREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 790 EIKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQ 869
Cdd:COG1196 630 ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966954983 870 HNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLfKSQIEQLKQQ 936
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL-ERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
411-1152 |
7.26e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 7.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 411 LVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ---QDLQSKFVAKENEVQSLHS 487
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 488 KLTDtlvSKQQLEQRLMQLMESEQKRVNKEESLQM---QVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAE 564
Cdd:TIGR02168 310 RLAN---LERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 565 KDKQIKQTEDSLANErdhLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAH-----ELEKMQQSVYVKDDKIRLLE 639
Cdd:TIGR02168 387 KVAQLELQIASLNNE---IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELqaeleELEEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 640 EQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVS--EQPNKDVVEQMEKCIQEKDE-----KLKTVEELLETGLiqVA 712
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQARLDSLERLQEnlEGFSEGVKALLKNQSGLSGIlgvlsELISVDEGYEAAI--EA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 713 TKEEELNAIRTENSSLTKE-VQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKT-------- 783
Cdd:TIGR02168 542 ALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyl 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 784 ------VQDLKQEIKALKE--------------------------EIGNVQLEKAQQLS-ITSQVQELQNLLKGKEEQMN 830
Cdd:TIGR02168 622 lggvlvVDDLDNALELAKKlrpgyrivtldgdlvrpggvitggsaKTNSSILERRREIEeLEEKIEELEEKIAELEKALA 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 831 TMKAVLEEKEKDLANTGKWLQDLQ----EENESLKAHVQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERE 906
Cdd:TIGR02168 702 ELRKELEELEEELEQLRKELEELSrqisALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 907 SDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLR 986
Cdd:TIGR02168 782 AEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 987 EKNWEAMEAlastekmLQDKVNKTSKERQQQVEAVElEAKEVLKKLfpkvsvpsnlsysewlhgfekkakecmagtsgSE 1066
Cdd:TIGR02168 862 EELEELIEE-------LESELEALLNERASLEEALA-LLRSELEEL--------------------------------SE 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1067 EVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQrsvEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLR 1146
Cdd:TIGR02168 902 ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
....*.
gi 966954983 1147 RENKDI 1152
Cdd:TIGR02168 979 NKIKEL 984
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-160 |
1.86e-11 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 63.22 E-value: 1.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 29 MKETLYDEVLAKQKREQKLIPTKTDKKKAEKKKNKKK------EIQNGNLHESD----SESVPRDFKLSDALAVEDdqVV 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAA--LE 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966954983 99 PVPLNVVETSSSVRERKKKEKKQKPVLEDQVIKESDASKIPGKKVEPVPVTKQPTPPSEAAA 160
Cdd:pfam05104 79 PEPVPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
317-1030 |
2.48e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.63 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 317 DALKKSSKGELTTLVHQLQEKDKLLAAVK-EDAAATKDRCKQLTQFQQVREQMEAEIAHLKQENGILRDA-VSNTTNQLE 394
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKaEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAkRVEIARKAE 1161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 395 SKQSAELNKLRQDyARLVNELTEKTGKLQQEEVQKknAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEH-EAAQQDLQS 473
Cdd:PTZ00121 1162 DARKAEEARKAED-AKKAEAARKAEEVRKAEELRK--AEDARKAEAARKAEEERKAEEARKAEDAKKAEAvKKAEEAKKD 1238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 474 KFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRvnKEESLQmQVQDILEQNEALKAQIQQFHSQIAAQTSASV 553
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR--KADELK-KAEEKKKADEAKKAEEKKKADEAKKKAEEAK 1315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 554 LAEELHKviaeKDKQIKQTEDSLANERDHLTSKEEELKDiqnmnfllKAEVQKLQALANEQAAAAHELEKMQQSVYVKDD 633
Cdd:PTZ00121 1316 KADEAKK----KAEEAKKKADAAKKKAEEAKKAAEAAKA--------EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAA 1383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 634 KIRLLEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEK---DEKLKTVEElletgliq 710
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAkkaDEAKKKAEE-------- 1455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 711 vATKEEELNAIRTEnsslTKEVQDLKAKQNDqvsfASLVEELKKVIHEkdGKIKSVEELLEAELLKVANKEKTVQDLKQE 790
Cdd:PTZ00121 1456 -AKKAEEAKKKAEE----AKKADEAKKKAEE----AKKADEAKKKAEE--AKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 791 IKALKEEignvQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQH 870
Cdd:PTZ00121 1525 DEAKKAE----EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 871 NLKE----VSSASQFEELEIVLKE--KENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSF 944
Cdd:PTZ00121 1601 YEEEkkmkAEEAKKAEEAKIKAEElkKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 945 PPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLR---EKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAV 1021
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKkaeEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIA 1760
|
....*....
gi 966954983 1022 ELEAKEVLK 1030
Cdd:PTZ00121 1761 HLKKEEEKK 1769
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
395-860 |
5.33e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 67.35 E-value: 5.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 395 SKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTaEHEAAQQDLQSK 474
Cdd:TIGR04523 148 KKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNK-SLESQISELKKQ 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 475 FVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAA--QTSAS 552
Cdd:TIGR04523 227 NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDlnNQKEQ 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 553 VLAEELHKVIAEKDKQIKQTEDSLANE-------RDHLTSKEEELKDIQNMNFLLKAE-------VQKLQALANEQAAAA 618
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNnkiisqlNEQISQLKKELTNSESENSEKQREleekqneIEKLKKENQSYKQEI 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 619 HELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVV------------EQM 686
Cdd:TIGR04523 387 KNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVkeliiknldntrESL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 687 EKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNdqvSFASLVEELKKVIHEKDGKIKSV 766
Cdd:TIGR04523 467 ETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS---SLKEKIEKLESEKKEKESKISDL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 767 EE--LLEAELLKVANKEKTVQDLKQEIKALKEEignvqlekaqQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLA 844
Cdd:TIGR04523 544 EDelNKDDFELKKENLEKEIDEKNKEIEELKQT----------QKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKIS 613
|
490
....*....|....*.
gi 966954983 845 NTGKWLQDLQEENESL 860
Cdd:TIGR04523 614 SLEKELEKAKKENEKL 629
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
309-1037 |
2.78e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 2.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 309 KEKSGVIQDALKKSSKGELTTLVHQLQEKDKLLAAVKEDAAATKDRCKQLT-QFQQVREQMEAEIAHLKQENGILRDAVS 387
Cdd:TIGR02169 207 REKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTeEISELEKRLEEIEQLLEELNKKIKDLGE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 388 NTTNQLESK---QSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEH 464
Cdd:TIGR02169 287 EEQLRVKEKigeLEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEEL 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 465 EAAQQDLQS---KFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQF 541
Cdd:TIGR02169 367 EDLRAELEEvdkEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 542 HSQIAAQTSAsvlAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDiqnmnflLKAEVQKLQALANEQAAAAHEL 621
Cdd:TIGR02169 447 ALEIKKQEWK---LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE-------AEAQARASEERVRGGRAVEEVL 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 622 EKMQQSVY-----------------------------VKDDKI--RLLEEQLQHEIS-------NKMEEFK--------- 654
Cdd:TIGR02169 517 KASIQGVHgtvaqlgsvgeryataievaagnrlnnvvVEDDAVakEAIELLKRRKAGratflplNKMRDERrdlsilsed 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 655 ----------------------------ILNDQNKALKLEVQ-KLQTL---------------VSEQPNKDVVEQMEKCI 690
Cdd:TIGR02169 597 gvigfavdlvefdpkyepafkyvfgdtlVVEDIEAARRLMGKyRMVTLegelfeksgamtggsRAPRGGILFSRSEPAEL 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 691 QEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQN----DQVSFASLVEELKKVIHEKDGKIKSV 766
Cdd:TIGR02169 677 QRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEqleqEEEKLKERLEELEEDLSSLEQEIENV 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 767 EELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKaqqlsITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANT 846
Cdd:TIGR02169 757 KSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPE-----IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 847 GKWLQDLQEENESLKAHVQEVAQhnlKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLF 926
Cdd:TIGR02169 832 EKEIQELQEQRIDLKEQIKSIEK---EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 927 KSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLR---EKNWEAMEALASTEKM- 1002
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRalePVNMLAIQEYEEVLKRl 988
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 966954983 1003 --LQDKVNKTSKER---QQQVEAVELEAKEVLKKLFPKVS 1037
Cdd:TIGR02169 989 deLKEKRAKLEEERkaiLERIEEYEKKKREVFMEAFEAIN 1028
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
694-1247 |
3.14e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.62 E-value: 3.14e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 694 DEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLkakqndqvsfaslvEELKKVIHEKDGKIKSVEELLEAE 773
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL--------------EELKEEIEELEKELESLEGSKRKL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 774 LLKVANKEKTVQDLKQEIKALKEEIGNVqlekaqqlsitsqvqelqNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDL 853
Cdd:PRK03918 258 EEKIRELEERIEELKKEIEELEEKVKEL------------------KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 854 QEENESLKAHVQEVAqhnlkevSSASQFEELEIVLKEKENELKRVEAMLKERESdlsSKTKLLQDVQDENKLFKSQIEQL 933
Cdd:PRK03918 320 EEEINGIEERIKELE-------EKEERLEELKKKLKELEKRLEELEERHELYEE---AKAKKEELERLKKRLTGLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 934 KQQnYQQASSfpPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDL----REKNWEAMEALASTEKMLQDKVNK 1009
Cdd:PRK03918 390 EKE-LEELEK--AKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgRELTEEHRKELLEEYTAELKRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1010 TSKERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYSEWLHGFEKKAKECMAG--TSGSEEVKVLEHKLKEADEMHTLLQL 1087
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEelEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1088 ECEK---YKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEM 1164
Cdd:PRK03918 547 ELEKleeLKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1165 ELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVR---------------QNEELNLLKAQLNETLTKLRTEQNER 1229
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELReeylelsrelaglraELEELEKRREEIKKTLEKLKEELEER 706
|
570
....*....|....*...
gi 966954983 1230 QKVAGDLHKAQQSLELIQ 1247
Cdd:PRK03918 707 EKAKKELEKLEKALERVE 724
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
487-1028 |
8.85e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 8.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 487 SKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKD 566
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 567 KQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLKaEVQKLQALANEQAAAAHELEKMQQSVyvkDDKIRLLEEQLQhEI 646
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRL---EEEINGIEERIK-EL 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 647 SNKMEEFKILNDQNKALKLEVQKLQTLVSE-QPNKDVVEQMEKCIQE-KDEKLKTVEELLETGLIQVATKEEELNAIRTE 724
Cdd:PRK03918 334 EEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 725 NSSLTKEVQDLK--------AKQNDQVSFASLVEELKKVIHEK--------------DGKIKSVEELLEAELLKVANKEK 782
Cdd:PRK03918 414 IGELKKEIKELKkaieelkkAKGKCPVCGRELTEEHRKELLEEytaelkriekelkeIEEKERKLRKELRELEKVLKKES 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 783 TVQDLKQ---EIKALKEEIGNVQLEKAQQLSIT-SQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE 858
Cdd:PRK03918 494 ELIKLKElaeQLKELEEKLKKYNLEELEKKAEEyEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 859 SLKAHVQEVAQHNLKEVSsaSQFEELE------IVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQ 932
Cdd:PRK03918 574 ELLKELEELGFESVEELE--ERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 933 LKQQNYQQAssfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLR---EKNWEAMEALASTEKMLQDKVNK 1009
Cdd:PRK03918 652 LEKKYSEEE-----YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKeelEEREKAKKELEKLEKALERVEEL 726
|
570
....*....|....*....
gi 966954983 1010 TSKERQQQVEAVELEAKEV 1028
Cdd:PRK03918 727 REKVKKYKALLKERALSKV 745
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
620-975 |
1.08e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 620 ELEKMQQSVYVKDDKIRLLEEQLQ--HEISNKMEEFKILNDqnkalKLEVQKLQTLVSEqpnkdvVEQMEKCIQEKDEKL 697
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEKRQQLErlRREREKAERYQALLK-----EKREYEGYELLKE------KEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 698 KTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKakQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKV 777
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 778 ANKEKTVQDLKQEIKALKEEIGNVQLEKAQqlsitsqvqeLQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEEN 857
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDK----------LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 858 ESLKahvQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQN 937
Cdd:TIGR02169 395 EKLK---REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL 471
|
330 340 350
....*....|....*....|....*....|....*...
gi 966954983 938 YQQASSFpphEELLKVISEREKEISGLWNELDSLKDAV 975
Cdd:TIGR02169 472 YDLKEEY---DRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1067-1304 |
1.41e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 1.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1067 EVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLR 1146
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1147 RENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELN----LLKAQLNETLTKL 1222
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAeaeeELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1223 RTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKE 1302
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
..
gi 966954983 1303 KE 1304
Cdd:COG1196 473 AL 474
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
581-1191 |
1.58e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 581 DHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILND-Q 659
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEElK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 660 NKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETgLIQVATKEEELNAIRTENSSLTKEVQDLKAKQ 739
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-LKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 740 NDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQdLKQEIKALKEEIGNVQLEKAQqLSITSQVQELQ 819
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELERLKKRLTG-LTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 820 NLLKGKEEQMNTMKAVLEEKeKDLANTGKWLQDLQEENESLKA------------HVQEVAQHNLKEVSS-ASQFEELEI 886
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARI-GELKKEIKELKKAIEELKKAKGkcpvcgrelteeHRKELLEEYTAELKRiEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 887 VLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQqassfppHEELLKVISEREKEISGLWN 966
Cdd:PRK03918 474 KERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEE-------YEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 967 ELdslkdavehqrKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEvLKKLfpkvsvpsnlsYSE 1046
Cdd:PRK03918 547 EL-----------EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE-LEPF-----------YNE 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1047 WLhgfekkakecmagtsgseEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWkvkvdeSHK 1126
Cdd:PRK03918 604 YL------------------ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY------SEE 659
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966954983 1127 TIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQ 1191
Cdd:PRK03918 660 EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
369-934 |
3.06e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 3.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 369 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdyaRLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQE 445
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 446 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQ 523
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 524 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAE-KDKQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLKA 602
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 603 EVQKLQALANeqaaaahELEKMQQSVYV------KDDKIRLLEEQLQhEISNKMEEFKILNDQNKALKLEVQKLQTLVSE 676
Cdd:PRK03918 420 EIKELKKAIE-------ELKKAKGKCPVcgreltEEHRKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKK 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 677 QPNKDVVEQMEKCIQEKDEKLKTVE-ELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAkqndqvsFASLVEELKKV 755
Cdd:PRK03918 492 ESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-------LKKKLAELEKK 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 756 IHEKDGKIKSVEELLEAELLKvankekTVQDLKQEIKALkEEIGNVQLEkaqQLSITSQVQELQNLLKGKEEQmntmkav 835
Cdd:PRK03918 565 LDELEEELAELLKELEELGFE------SVEELEERLKEL-EPFYNEYLE---LKDAEKELEREEKELKKLEEE------- 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 836 LEEKEKDLANTGKWLQDLQEENESLKAHVQEvaqhnlkevssaSQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKL 915
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELEKKYSE------------EEYEELREEYLELSRELAGLRAELEELEKRREEIKKT 695
|
570
....*....|....*....
gi 966954983 916 LQDVQDENKLFKSQIEQLK 934
Cdd:PRK03918 696 LEKLKEELEEREKAKKELE 714
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
631-1282 |
3.32e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 631 KDDKIRLLEEQLQHEISNKMEEFKILNDQNKALklEVQKlqtlvSEQPNKDVVEQmekciqEKDEKLKTVEELLETGLIQ 710
Cdd:PTZ00121 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAE--AVKK-----AEEAKKDAEEA------KKAEEERNNEEIRKFEEAR 1261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 711 VATKEEELNAIRTENSSLTKEVQdlKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQE 790
Cdd:PTZ00121 1262 MAHFARRQAAIKAEEARKADELK--KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAE 1339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 791 IKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLAntgkwlQDLQEENESLKAHVQEVAqh 870
Cdd:PTZ00121 1340 EAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA------DEAKKKAEEDKKKADELK-- 1411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 871 nlKEVSSASQFEELeivlKEKENELKRVEAMLKERESdlSSKTKLLQDVQDENKlfKSQIEQLKQQNYQQASSFPPHEEL 950
Cdd:PTZ00121 1412 --KAAAAKKKADEA----KKKAEEKKKADEAKKKAEE--AKKADEAKKKAEEAK--KAEEAKKKAEEAKKADEAKKKAEE 1481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 951 LKVISEREKEISGLWNELDSLKDAVEhQRKKNNDLR--EKNWEAMEALASTEKMLQDKVNKTSKERQqqveAVELEAKEV 1028
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAE-AKKKADEAKkaEEAKKADEAKKAEEAKKADEAKKAEEKKK----ADELKKAEE 1556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1029 LKKLFPKVSVPSNLSYSEWLHGFEKKAKEcmagTSGSEEVKVLE-HKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQ 1107
Cdd:PTZ00121 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEE----AKKAEEARIEEvMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1108 RSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHlEMELEKAEMERSTYVTEVRELKDLL 1187
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED-EKKAAEALKKEAEEAKKAEELKKKE 1711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1188 TELQKKlddsySEAVRQNEELNLLKAQL--------NETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITV 1259
Cdd:PTZ00121 1712 AEEKKK-----AEELKKAEEENKIKAEEakkeaeedKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
|
650 660
....*....|....*....|...
gi 966954983 1260 IENSDVSPETESSEKETMSVSLN 1282
Cdd:PTZ00121 1787 EEDEKRRMEVDKKIKDIFDNFAN 1809
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
779-1275 |
3.56e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.15 E-value: 3.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 779 NKEKTVQDLKQEIKALKEEIGnvqlekaqqlSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE 858
Cdd:PRK03918 162 NAYKNLGEVIKEIKRRIERLE----------KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 859 SLKAHVQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKL--FKSQIEQLKQQ 936
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLseFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 937 NYQQASSFpphEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNW---EAMEALASTEKMLQDKVNKTSKE 1013
Cdd:PRK03918 312 IEKRLSRL---EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHElyeEAKAKKEELERLKKRLTGLTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1014 RQQQVEAVELEAKEVLKKLFPKVSVPSNLSYSEwlhGFEKKAKECMAGTSG---------------------SEEVKVLE 1072
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEI---KELKKAIEELKKAKGkcpvcgrelteehrkelleeyTAELKRIE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1073 HKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQ-----RSVEQEENKWKV-KVDESHKTIKQMQSSFTSSEQELERLR 1146
Cdd:PRK03918 466 KELKEIEEKERKLRKELRELEKVLKKESELIKLKElaeqlKELEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1147 RENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQ 1226
Cdd:PRK03918 546 KELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLE 625
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 966954983 1227 NERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKE 1275
Cdd:PRK03918 626 EELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE 674
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
776-1032 |
5.30e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 5.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 776 KVANKEKTVQDLKQEIKALKEEIGNVQLEKAQqlsITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQE 855
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEE---LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 856 ENESLKA----HVQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIE 931
Cdd:COG1196 317 RLEELEEelaeLEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 932 QLKQQNYQQASSfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTS 1011
Cdd:COG1196 397 ELAAQLEELEEA---EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260
....*....|....*....|.
gi 966954983 1012 KERQQQVEAVELEAKEVLKKL 1032
Cdd:COG1196 474 LLEAALAELLEELAEAAARLL 494
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
299-1036 |
1.99e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 299 DEALCVVDLLKEKSGVIQdALKKSSKGELTTLVHQLQEKDKLLAAVKEDAAATKDRCKQLTQFQQV----REQMEAEIAH 374
Cdd:TIGR02168 333 DELAEELAELEEKLEELK-EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASlnneIERLEARLER 411
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 375 LKQENGILRDAVSNTTNQLESKQ----SAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRW 450
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAElkelQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 451 EEVQSYIRKRTAEHEAAQQDLQSKfvakenevqslhSKLTDTLvskqqleQRLMQLMESEQK-RVNKEESLQMQVQDILE 529
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQ------------SGLSGIL-------GVLSELISVDEGyEAAIEAALGGRLQAVVV 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 530 QNEALKAQIQQFHSQIAAQTSA-SVLAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDiqNMNFLL-------- 600
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRVTfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK--ALSYLLggvlvvdd 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 601 ---KAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVSEQ 677
Cdd:TIGR02168 631 ldnALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEEL 710
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 678 pnKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKqndqvsfaslVEELKKVIH 757
Cdd:TIGR02168 711 --EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER----------LEEAEEELA 778
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 758 EKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQL----SITSQVQELQNLLKGKEEQMNTMK 833
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLErriaATERRLEDLEEQIEELSEDIESLA 858
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 834 AVLEEKEKDLAntgkwlqdlqEENESLKAHVQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKEResdlssKT 913
Cdd:TIGR02168 859 AEIEELEELIE----------ELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL------RE 922
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 914 KLLQDVQDENKLfKSQIEQLKQQNYQQASSfpPHEELLKVISEREKEISGLWNELDSLKdavehqrKKNNDLREKNWEAM 993
Cdd:TIGR02168 923 KLAQLELRLEGL-EVRIDNLQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLKRLE-------NKIKELGPVNLAAI 992
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 966954983 994 EALASTEKMLQ------DKVNKTSKERQQQVEAVELEAKEVLKKLFPKV 1036
Cdd:TIGR02168 993 EEYEELKERYDfltaqkEDLTEAKETLEEAIEEIDREARERFKDTFDQV 1041
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
401-1285 |
3.02e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.12 E-value: 3.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 401 LNKLRQDYARLVNELTEKTGKLQQ-EEVQKKNAEQAVTQLKVQLQEAERRwEEVQSYIRKRTAEheaAQQDLQSKFVAKE 479
Cdd:pfam15921 76 IERVLEEYSHQVKDLQRRLNESNElHEKQKFYLRQSVIDLQTKLQEMQME-RDAMADIRRRESQ---SQEDLRNQLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 480 NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEqkrvnkeESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASvLAEELH 559
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQLRKMMLSH-------EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRS-LGSAIS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 560 KVIAEKDKQIKQTEDSLANERDHLTSKEEELKDiqNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLE 639
Cdd:pfam15921 224 KILRELDTEISYLKGRIFPVEDQLEALKSESQN--KIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 640 EQLQHEISNkmeefkilndQNKALKLEVQKLQTLVSEQPNkdvveqmekciqEKDEKLKTVEELLETGLIQVATKEEELN 719
Cdd:pfam15921 302 EIIQEQARN----------QNSMYMRQLSDLESTVSQLRS------------ELREAKRMYEDKIEELEKQLVLANSELT 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 720 AIRTENSSLTKEVQDLkakqNDQVsfaslvEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEig 799
Cdd:pfam15921 360 EARTERDQFSQESGNL----DDQL------QKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNME-- 427
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 800 nvqlekaqqlsitsqVQELQNLLKGKEE----QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEV 875
Cdd:pfam15921 428 ---------------VQRLEALLKAMKSecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLE 492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 876 SSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSfpphEELLKVIS 955
Cdd:pfam15921 493 SSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEK----DKVIEILR 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 956 EREKEISGLWNELDSLKDAVEHQRKK-NNDLREKNWEAMEAlasteKMLQDKVNKTSKERQQQVEAVELEAKEVLkklfp 1034
Cdd:pfam15921 569 QQIENMTQLVGQHGRTAGAMQVEKAQlEKEINDRRLELQEF-----KILKDKKDAKIRELEARVSDLELEKVKLV----- 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1035 kvsvpsnlsysewlhgfekkakecmagTSGSEEVKVLEHKLKEADEMHTLLQlecekyksvlaETEGILQKLQRSVEQEE 1114
Cdd:pfam15921 639 ---------------------------NAGSERLRAVKDIKQERDQLLNEVK-----------TSRNELNSLSEDYEVLK 680
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1115 NKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAemerstyVTEVRELKDLLTELQKKL 1194
Cdd:pfam15921 681 RNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQ-------ITAKRGQIDALQSKIQFL 753
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1195 DDSYSEAvrqNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKI--VKAAGDITVIENSDVSPETESS 1272
Cdd:pfam15921 754 EEAMTNA---NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVanMEVALDKASLQFAECQDIIQRQ 830
|
890
....*....|...
gi 966954983 1273 EKETMSVSLNQTV 1285
Cdd:pfam15921 831 EQESVRLKLQHTL 843
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
357-1016 |
3.24e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 55.05 E-value: 3.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 357 QLTQFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDYARLVNELtEKTGKLQQEEVQKKnAEQAV 436
Cdd:TIGR00606 270 EIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQREL-EKLNKERRLLNQEK-TELLV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 437 TQLKVQLQeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLH--------------SKLTDTLVSKQQLEQR 502
Cdd:TIGR00606 348 EQGRLQLQ-ADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHtlvierqedeaktaAQLCADLQSKERLKQE 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 503 lmQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKdkqikqtedSLANERDH 582
Cdd:TIGR00606 427 --QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAEREL---------SKAEKNSL 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 583 LTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQ---QSVYVKDDKIRLLEEQLQHEISNKMEEF---KIL 656
Cdd:TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEmltKDKMDKDEQIRKIKSRHSDELTSLLGYFpnkKQL 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 657 NDQNKALKLEVQKLQT-LVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEE---LNAIRTENSSLTKEV 732
Cdd:TIGR00606 576 EDWLHSKSKEINQTRDrLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEesdLERLKEEIEKSSKQR 655
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 733 QDLKAKQNDQVSFASLV------------------EELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKAL 794
Cdd:TIGR00606 656 AMLAGATAVYSQFITQLtdenqsccpvcqrvfqteAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGR 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 795 KEEIGNVQLE----KAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQh 870
Cdd:TIGR00606 736 QSIIDLKEKEipelRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAK- 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 871 nLKEVSSASQFEELEIVLKEKENELKRVEAMLKEREsdlssktKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEEL 950
Cdd:TIGR00606 815 -LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNR-------KLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQF 886
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966954983 951 LKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKERQQ 1016
Cdd:TIGR00606 887 EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
416-1229 |
4.03e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 4.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 416 TEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLtdtlvs 495
Cdd:TIGR02169 205 REREKAERYQALLKEKREYEGYELLKEKEALERQKEA----IERQLASLEEELEKLTEEISELEKRLEEIEQLL------ 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 496 kQQLEQRLMQLMESEQKRVNKE-ESLQMQVQDILEQNEALKAQIQQfhsqiaaqtsasvLAEELHKVIAEKDKQIKQTED 574
Cdd:TIGR02169 275 -EELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELED-------------AEERLAKLEAEIDKLLAEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 575 SlanerdhltskEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFK 654
Cdd:TIGR02169 341 L-----------EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 655 ILNDQNKALKLEV----QKLQTLVSEQPN-KDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLT 729
Cdd:TIGR02169 410 RLQEELQRLSEELadlnAAIAGIEAKINElEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 730 KEVQDLKAK----QNDQVSFASLVEELKKVIhekDGKIKSVEELLEAELLKVANKE------------KTVQDLKQEIKA 793
Cdd:TIGR02169 490 RELAEAEAQarasEERVRGGRAVEEVLKASI---QGVHGTVAQLGSVGERYATAIEvaagnrlnnvvvEDDAVAKEAIEL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 794 LKEEignvQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKW-LQD--LQEENESLKAHVQEVAQH 870
Cdd:TIGR02169 567 LKRR----KAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYvFGDtlVVEDIEAARRLMGKYRMV 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 871 NL--------------------KEVSSASQFEELEIV---LKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFK 927
Cdd:TIGR02169 643 TLegelfeksgamtggsraprgGILFSRSEPAELQRLrerLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 928 SQIEQLKQQnyqqassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKV 1007
Cdd:TIGR02169 723 KEIEQLEQE----------EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSR 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1008 NKTSKERQQQVEAVELEAKEVLKklfpkvSVPSNLSYSEWLHGFEKKAKEcmagtsgSEEVKVLEHKLKEADEMHT--LL 1085
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLR------EIEQKLNRLTLEKEYLEKEIQ-------ELQEQRIDLKEQIKSIEKEieNL 859
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1086 QLECEKYKSVLAETEGILQKLqrsvEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEME 1165
Cdd:TIGR02169 860 NGKKEELEEELEELEAALRDL----ESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966954983 1166 LEKAEMERSTYVTEVRELKDLLTELQKKLddsysEAVRQNEELNLL--------KAQLNETLTKLRTEQNER 1229
Cdd:TIGR02169 936 IEDPKGEDEEIPEEELSLEDVQAELQRVE-----EEIRALEPVNMLaiqeyeevLKRLDELKEKRAKLEEER 1002
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
546-936 |
7.88e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 7.88e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 546 AAQTSASVLAEElhKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQ 625
Cdd:TIGR02168 665 SAKTNSSILERR--REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 626 QSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVSE-----QPNKDVVEQMEKCIQEKDEKLKTV 700
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQlkeelKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 701 EELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQND-QVSFASLVEELKKVIHEKDGK---IKSVEELLEAELLK 776
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEElEELIEELESELEALLNERASLeeaLALLRSELEELSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 777 VANKEKTVQDLKQEIKALKEEIGNVQLEKAQqlsitSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANtgkwLQDLQEE 856
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEG-----LEVRIDNLQERLSEEYSLTLEEAEALENKIEDD----EEEARRR 973
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 857 NESLKAHVQEVAQHNLkevSSASQFEELEivlkekenelKRVEAMLKERESDLSSKTKLLQDVQDENK----LFKSQIEQ 932
Cdd:TIGR02168 974 LKRLENKIKELGPVNL---AAIEEYEELK----------ERYDFLTAQKEDLTEAKETLEEAIEEIDReareRFKDTFDQ 1040
|
....
gi 966954983 933 LKQQ 936
Cdd:TIGR02168 1041 VNEN 1044
|
|
| Nucleoporin_FG2 |
pfam15967 |
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ... |
335-513 |
1.58e-06 |
|
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.
Pssm-ID: 435043 [Multi-domain] Cd Length: 586 Bit Score: 52.36 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 335 QEKDKLLAAVKEDAAATKDR------CKQLTQFQQ-VREQ--MEAEI------AHLKQENGI--LRDAVSNTTNQLEsKQ 397
Cdd:pfam15967 224 KKSDKASGTRPEDSKALKDEnlppviCQDVENFQKfVKEQkqVQEEIsrmsskAMLKVQDDIkaLKQLLSVAASGLQ-RN 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 398 SAELNKLRQDYAR-LVN-ELTEKTGK----LQQEEVQKKNAEQA-VTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQD 470
Cdd:pfam15967 303 SLAIDKLKIETAQeLKNaDIALRTQKtppgLQHENTAPADYFRSlVEQFEVQLQQYRQQIEELENHLTTQSSSSHITPQD 382
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 966954983 471 LQ-------SKFVAKENEVQSLHSKLtdTLVSKQQLEQRLMQLMES----EQKR 513
Cdd:pfam15967 383 LSlamqklyQTFVALAAQLQSVHENV--KILKEQYLGYRKAFLEDStdvfEAKR 434
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
332-734 |
2.46e-06 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 52.36 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 332 HQLQEKDKLLAAVK--EDAAATKDRCKQltqFQQVREQMEAEIAHLKQENGILRDAVSNttnqLESKQSAelNKLRQDYA 409
Cdd:PRK10929 42 AQAEIVEALQSALNwlEERKGSLERAKQ---YQQVIDNFPKLSAELRQQLNNERDEPRS----VPPNMST--DALEQEIL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 410 RLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQqdlQSKFVAKENEVQSLHSKL 489
Cdd:PRK10929 113 QVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLA---QAQLTALQAESAALKALV 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 490 tdtlvskQQLEqrLMQLMESeqkrvNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQ---------TSASVLAE---E 557
Cdd:PRK10929 190 -------DELE--LAQLSAN-----NRQELARLRSELAKKRSQQLDAYLQALRNQLNSQrqreaeralESTELLAEqsgD 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 558 LHKVIAEKDKQIKQTEDSL---ANERDHLTSKE-----EELKDIQNMNFL----------------LKAEVQKLQalane 613
Cdd:PRK10929 256 LPKSIVAQFKINRELSQALnqqAQRMDLIASQQrqaasQTLQVRQALNTLreqsqwlgvsnalgeaLRAQVARLP----- 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 614 qaaaahELEKMQQsvyVKDDKIRLLEEQLQHEisnkmeefKILNDQNKALKLEVQKLQTLVSEQpnkdvveqmeKCIQek 693
Cdd:PRK10929 331 ------EMPKPQQ---LDTEMAQLRVQRLRYE--------DLLNKQPQLRQIRQADGQPLTAEQ----------NRIL-- 381
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 966954983 694 DEKLKTVEELLETGLIQVATKEEELNAIRTENSSLT---KEVQD 734
Cdd:PRK10929 382 DAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEdalKEVNE 425
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
556-1253 |
2.61e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 2.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 556 EELHKVIAEKDKQIkqteDSLANERDHLTSKEEELKDIQNMNF-LLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDK 634
Cdd:TIGR02169 187 ERLDLIIDEKRQQL----ERLRREREKAERYQALLKEKREYEGyELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 635 IRLLEEQLQHEIS------NKMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGL 708
Cdd:TIGR02169 263 LEKRLEEIEQLLEelnkkiKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 709 IQVATKEEELNAIRTENSSLTKEVQDLKAK-QNDQVSFASLVEELKKVIHEKDG---KIKSVEELLEAELLKVANKEKTV 784
Cdd:TIGR02169 343 REIEEERKRRDKLTEEYAELKEELEDLRAElEEVDKEFAETRDELKDYREKLEKlkrEINELKRELDRLQEELQRLSEEL 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 785 QDLKQEIKALKEEIGNVQLEKaqqlsitsqvQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHV 864
Cdd:TIGR02169 423 ADLNAAIAGIEAKINELEEEK----------EDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 865 QEVAQHNLKEVSSASQFEELEIVLKEKEN-------ELKRV-EAMLKERESDLSSKTKLLqdVQDENKLFKSQIEQLKQQ 936
Cdd:TIGR02169 493 AEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvaQLGSVgERYATAIEVAAGNRLNNV--VVEDDAVAKEAIELLKRR 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 937 NYQQASSFPpheeLLKV-ISEREKEISGLWNELDSLKDAVEHQRKKNN-------------------------------- 983
Cdd:TIGR02169 571 KAGRATFLP----LNKMrDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtlvvedieaarrlmgkyrmvtleg 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 984 DLREKNwEAMEALASTEKMLQdKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVPSNL--SYSEWLHGFEKKAKECMA- 1060
Cdd:TIGR02169 647 ELFEKS-GAMTGGSRAPRGGI-LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRldELSQELSDASRKIGEIEKe 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1061 GTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKW-KVKVDESHKTIKQMQSSFTSSE 1139
Cdd:TIGR02169 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALnDLEARLSHSRIPEIQAELSKLE 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1140 QELERLRRENKDIEnlrREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETL 1219
Cdd:TIGR02169 805 EEVSRIEARLREIE---QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE 881
|
730 740 750
....*....|....*....|....*....|....
gi 966954983 1220 TKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKA 1253
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
308-700 |
2.64e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 2.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 308 LKEKSGVIQDALKKSSKGELTTLvhQLQEKDKLLAAVKEDAAATKDRCKQltqfqqvreqmeaEIAHLKQENGILRDAVS 387
Cdd:TIGR02169 648 LFEKSGAMTGGSRAPRGGILFSR--SEPAELQRLRERLEGLKRELSSLQS-------------ELRRIENRLDELSQELS 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 388 NTTNQLESKQSaELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSyirkrtAEHEAA 467
Cdd:TIGR02169 713 DASRKIGEIEK-EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE------ALNDLE 785
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 468 QQDLQSKFVAKENEVQSLHSKLtdtlvskQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIaa 547
Cdd:TIGR02169 786 ARLSHSRIPEIQAELSKLEEEV-------SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI-- 856
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 548 qtsasvlaEELHKVIAEKdkqikqtedslanerdhltskEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQS 627
Cdd:TIGR02169 857 --------ENLNGKKEEL---------------------EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966954983 628 VYVKDDKIRLLEEQLQHEISnkmeefkILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTV 700
Cdd:TIGR02169 908 LEAQIEKKRKRLSELKAKLE-------ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPV 973
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
785-1253 |
6.96e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 6.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 785 QDLKQEIKALKEEIGNVQLEKAQQ--LSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDL--------ANTGKWLQDLQ 854
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQRrlELLEAELEELRAELARLEAELERLEARLDALREELdeleaqirGNGGDRLEQLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 855 EENESLKAHVQEVAQhNLKEVssASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKlfkSQIEQLK 934
Cdd:COG4913 345 REIERLERELEERER-RRARL--EALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE---AALRDLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 935 QQnyqqassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQ-RKKNNDLR-----------EKNWE-AMEALAST-- 999
Cdd:COG4913 419 RE----------LRELEAEIASLERRKSNIPARLLALRDALAEAlGLDEAELPfvgelievrpeEERWRgAIERVLGGfa 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1000 ---------EKMLQDKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVPSNLS-----YSEWLHGF-------------- 1051
Cdd:COG4913 489 ltllvppehYAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDfkphpFRAWLEAElgrrfdyvcvdspe 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1052 ----EKKA--KECMAGTSGSEEVK----------VL----EHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRsvE 1111
Cdd:COG4913 569 elrrHPRAitRAGQVKGNGTRHEKddrrrirsryVLgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQE--R 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1112 QEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQ 1191
Cdd:COG4913 647 REALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAE 726
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966954983 1192 KKLDDSYSEAVRQNEELNL-LKAQLNETLTKLRTEQNERQKVA---GDLHKAQQSLELIQSKIVKA 1253
Cdd:COG4913 727 EELDELQDRLEAAEDLARLeLRALLEERFAAALGDAVERELREnleERIDALRARLNRAEEELERA 792
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
395-596 |
1.54e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 395 SKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL--Q 472
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELeaQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 473 SKFVAKENEVQSLHSKLTDTLV-----SKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAA 547
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALllspeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 966954983 548 QTSAsvlAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQNM 596
Cdd:COG4942 183 LEEE---RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
873-1257 |
1.59e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 873 KEVSSASQFEELEIVLKEKENEL-----KRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQnyqqassfppH 947
Cdd:COG1196 207 RQAEKAERYRELKEELKELEAELlllklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE----------L 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 948 EELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEkmlqdkvnktskERQQQVEAVELEAKE 1027
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE------------EELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1028 VLKKLfpkvsvpsnlsysewlhgfekkakecmagtsgSEEVKVLEHKLKEADEmhtLLQLECEKYKSVLAETEGILQKLQ 1107
Cdd:COG1196 345 ELEEA--------------------------------EEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1108 RSVEQEENKwkvkvdesHKTIKQMQSSFTSSEQELERLRREnkdIENLRREREHLEMELEKAEMERSTYVTEVRELKDLL 1187
Cdd:COG1196 390 EALRAAAEL--------AAQLEELEEAEEALLERLERLEEE---LEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1188 TELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDI 1257
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV 528
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
710-936 |
1.64e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 710 QVATKEEELNAIRTENSSLTKEVQDLKAKQndqvsfASLVEELKKVihekDGKIKSVEELLEAELLKVANKEKTVQDLKQ 789
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEE------KALLKQLAAL----ERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 790 EIKALKEEIGNVQLEKAQQLSI---TSQVQELQNLLKGKEeqmntmkavLEEKEKDLANTGKWLQDLQEENESLKAHVQE 866
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRAlyrLGRQPPLALLLSPED---------FLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 867 VAQhnlKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQ 936
Cdd:COG4942 162 LAA---LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
383-922 |
1.76e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 1.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 383 RDAVSNTTNQLESKQSAE----LNKLRQdyarlvnELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQsyir 458
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDlherLNGLES-------ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE---- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 459 krtaEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEAL---- 534
Cdd:PRK02224 255 ----TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELrdrl 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 535 ---KAQIQQFHSQI-AAQTSASVL---AEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDiqNMNFLLKAEVQkL 607
Cdd:PRK02224 331 eecRVAAQAHNEEAeSLREDADDLeerAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE--LRERFGDAPVD-L 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 608 QALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQH------------------------EISNKMEEFKILNDQNKAL 663
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEaealleagkcpecgqpvegsphveTIEEDRERVEELEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 664 KLEVQKLQTLVSEQpnKDVVEQmEKCIQEKDEKLKTVEELLEtgliqvaTKEEELNAIRTENSSLTKEVQDLKAKQNDQV 743
Cdd:PRK02224 488 EEEVEEVEERLERA--EDLVEA-EDRIERLEERREDLEELIA-------ERRETIEEKRERAEELRERAAELEAEAEEKR 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 744 SFASLVEELKKVIHEKDGKIKSVEELLEAELLKVAnkekTVQDLKQEIKALKEEIGNVQlEKAQQLsitsqvQELQNLLK 823
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESLE----RIRTLLAAIADAEDEIERLR-EKREAL------AELNDERR 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 824 GKEEQMNTMKAVLEEKEKDLAntgkwLQDLQEENESLKAHVQEVAQhNLKEVssASQFEELEIVLKEKENELKRVEAmLK 903
Cdd:PRK02224 627 ERLAEKRERKRELEAEFDEAR-----IEEAREDKERAEEYLEQVEE-KLDEL--REERDDLQAEIGAVENELEELEE-LR 697
|
570
....*....|....*....
gi 966954983 904 ERESDLSSKTKLLQDVQDE 922
Cdd:PRK02224 698 ERREALENRVEALEALYDE 716
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
782-1001 |
1.77e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 782 KTVQDLKQEIKALKEEIGNVQLEKAQQlsiTSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLK 861
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAAL---KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 862 AHVQEVaQHNLKEVSSA----SQFEELEIVLKEKENE--------LKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQ 929
Cdd:COG4942 97 AELEAQ-KEELAELLRAlyrlGRQPPLALLLSPEDFLdavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966954983 930 IEQLKQQNYQQassfppHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEK 1001
Cdd:COG4942 176 LEALLAELEEE------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1066-1305 |
2.17e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1066 EEVKVLEHKLKEADEMHTLLQLEceKYKSVLAETEGILQKLQRSVEQEEnkwkVKVDESHKTIKQMQSSFTSSEQELERL 1145
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLR--ELEAELEELEAELEELEAELEELE----AELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1146 RrenKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTE 1225
Cdd:COG1196 287 Q---AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1226 QNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKEH 1305
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
435-1241 |
2.38e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.81 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 435 AVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRV 514
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKL--KEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERID 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 515 NKEESLQMQVQDILEQNealkaQIQQFHSQIAAQTSASVLAEElhKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQ 594
Cdd:pfam02463 241 LLQELLRDEQEEIESSK-----QEIEKEEEKLAQVLKENKEEE--KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 595 NMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKddkirllEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLV 674
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIK-------REAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 675 SEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASL----VE 750
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLlkdeLE 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 751 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMN 830
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIS 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 831 TMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEVSSASQFEELEIVLKEKENE--LKRVEAMLKERESD 908
Cdd:pfam02463 547 TAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKatLEADEDDKRAKVVE 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 909 LSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREK 988
Cdd:pfam02463 627 GILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQ 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 989 NWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYSEWLHGFEKKAKECMAGTSGSEEV 1068
Cdd:pfam02463 707 REKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1069 KVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRE 1148
Cdd:pfam02463 787 KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKE 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1149 NKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNE 1228
Cdd:pfam02463 867 ELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEAD 946
|
810
....*....|...
gi 966954983 1229 RQKVAGDLHKAQQ 1241
Cdd:pfam02463 947 EKEKEENNKEEEE 959
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
683-1026 |
2.82e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 683 VEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKeVQDLKAKQND--QVSFASLVEELKKVIHEKD 760
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-YQALLKEKREyeGYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 761 GKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEI----GNVQLE-KAQQLSITSQVQELQNLLKGKEEQMntmkav 835
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIkdlgEEEQLRvKEKIGELEAEIASLERSIAEKEREL------ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 836 lEEKEKDLANTGKWLQDLQEENESLKahvQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKL 915
Cdd:TIGR02169 318 -EDAEERLAKLEAEIDKLLAEIEELE---REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 916 LQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEA 995
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350
....*....|....*....|....*....|.
gi 966954983 996 LASTekmlQDKVNKTSKERQQQVEAVELEAK 1026
Cdd:TIGR02169 474 LKEE----YDRVEKELSKLQRELAEAEAQAR 500
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
710-1264 |
2.94e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.48 E-value: 2.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 710 QVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVS----FASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQ 785
Cdd:TIGR04523 111 EIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTeikkKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 786 DLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENE----SLK 861
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNkikkQLS 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 862 AHVQEVAQHNLKEVSSASQFEELEIVLKEKENElkRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQ----N 937
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQisqlK 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 938 YQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKnweamealastekmlQDKVNKTSKERQQQ 1017
Cdd:TIGR04523 349 KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESK---------------IQNQEKLNQQKDEQ 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1018 VEAVELEaKEVLKKLFPKVSVPSNLSYSEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLA 1097
Cdd:TIGR04523 414 IKKLQQE-KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELK 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1098 ETEGILQKLQRSVEQEENKWKV---KVDESHKTIKQMQSSFTSSEQELERLRRE------NKDIENLRREREHLEMELEK 1168
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEKVKDltkKISSLKEKIEKLESEKKEKESKISDLEDElnkddfELKKENLEKEIDEKNKEIEE 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1169 AEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQS 1248
Cdd:TIGR04523 573 LKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKE 652
|
570
....*....|....*.
gi 966954983 1249 KIVKAAGDITVIENSD 1264
Cdd:TIGR04523 653 TIKEIRNKWPEIIKKI 668
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
778-906 |
3.49e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.85 E-value: 3.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 778 ANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLsitsqvQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEEN 857
Cdd:PRK12704 53 AIKKEALLEAKEEIHKLRNEFEKELRERRNEL------QKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQEL 126
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 966954983 858 ESLKAHVQE-VAQHN--LKEVSSASQFEELEIVLKEKENELKR-VEAMLKERE 906
Cdd:PRK12704 127 EKKEEELEElIEEQLqeLERISGLTAEEAKEILLEKVEEEARHeAAVLIKEIE 179
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1143-1310 |
3.70e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 3.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1143 ERLRRENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKL 1222
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1223 RTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKE 1302
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL 398
|
....*...
gi 966954983 1303 KEHYQVLE 1310
Cdd:COG1196 399 AAQLEELE 406
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
814-1250 |
3.85e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 814 QVQELQNLLKGKEEQmntmKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHnLKEVSSASQFEELEIVLKEKEN 893
Cdd:COG4717 72 ELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKLEKL-LQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 894 ELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQassfppheellkvISEREKEISGLWNELDSLKD 973
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEE-------------LQDLAEELEELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 974 AVEHQRKKNNDLREKnweamEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSVP------SNLSYSEW 1047
Cdd:COG4717 214 ELEEAQEELEELEEE-----LEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTiagvlfLVLGLLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1048 LHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQL---ECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDES 1124
Cdd:COG4717 289 LFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALglpPDLSPEELLELLDRIEELQELLREAEELEEELQLEEL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1125 HKTIKQ-MQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKA--EMERSTYVTEVRELKDLLTELQKKLDDSYSEA 1201
Cdd:COG4717 369 EQEIAAlLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELlgELEELLEALDEEELEEELEELEEELEELEEEL 448
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 966954983 1202 VRQNEELNLLKAQLNE-----TLTKLRTEQNERQKVAGDLHKAQQSLELIQSKI 1250
Cdd:COG4717 449 EELREELAELEAELEQleedgELAELLQELEELKAELRELAEEWAALKLALELL 502
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
356-541 |
3.98e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 3.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 356 KQLTQFQQVREQMEAEIAHLKQENGILrdAVSNTTNQLeskqSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQA 435
Cdd:COG3206 182 EQLPELRKELEEAEAALEEFRQKNGLV--DLSEEAKLL----LQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 436 VTQLKVQLQEAErrweevqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQkrvn 515
Cdd:COG3206 256 LPELLQSPVIQQ---------LRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAEL---- 322
|
170 180
....*....|....*....|....*.
gi 966954983 516 keESLQMQVQDILEQNEALKAQIQQF 541
Cdd:COG3206 323 --EALQAREASLQAQLAQLEARLAEL 346
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
305-573 |
5.08e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.98 E-value: 5.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 305 VDLLKEKSgvIQDALKKSSKGELTT-----LVHQLQEKDKLLAAVKEDAAATKDRCKQLTQFQQVREQMEAEIAHLKQEN 379
Cdd:PRK11281 33 GDLPTEAD--VQAQLDALNKQKLLEaedklVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 380 G-ILRDAVSNTTN-QLESKqsaeLNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQ--- 454
Cdd:PRK11281 111 DeETRETLSTLSLrQLESR----LAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKvgg 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 455 -----SYIRKRTAEHEA--AQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESlQMQVQDI 527
Cdd:PRK11281 187 kalrpSQRVLLQAEQALlnAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRLTLS-EKTVQEA 265
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 966954983 528 LEQNEALKAQiqqfhsqiaaqtSASVLAEELHKVIAEKDKQIKQTE 573
Cdd:PRK11281 266 QSQDEAARIQ------------ANPLVAQELEINLQLSQRLLKATE 299
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
326-485 |
6.95e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 6.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 326 ELTTLVHQLQEKDKLLAAVKEDAAATKDRC--KQLTQFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNK 403
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFAQRRLELleAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 404 LRQDYARLVNELTEKTGKLQQEEVQKKNA-------EQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFV 476
Cdd:COG4913 343 LEREIERLERELEERERRRARLEALLAALglplpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR 422
|
....*....
gi 966954983 477 AKENEVQSL 485
Cdd:COG4913 423 ELEAEIASL 431
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
683-1275 |
7.42e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 47.38 E-value: 7.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 683 VEQMEKCIQEKDEKLKTVEELLETG--LIQVAT--KEEELNAIRTENSSLTKEVQDLK-AKQNDQVSFASL--VEELKKV 755
Cdd:COG5022 877 VELAERQLQELKIDVKSISSLKLVNleLESEIIelKKSLSSDLIENLEFKTELIARLKkLLNNIDLEEGPSieYVKLPEL 956
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 756 --IHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGnvqlekaqqlSITSQVQELQNLLKGKEEqMNTMK 833
Cdd:COG5022 957 nkLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELA----------ELSKQYGALQESTKQLKE-LPVEV 1025
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 834 AVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNlKEVSSASQFEELEIVLKEKENELKRVEAMLKE-RESDLSSK 912
Cdd:COG5022 1026 AELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQ-ARYKALKLRRENSLLDDKQLYQLESTENLLKTiNVKDLEVT 1104
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 913 TKLLqdVQDENKLFKSQIEQLKQQNYQQASSFPPheELLKVISEREKEISGLWNELDSLKDAvehqrkknNDLREKNWEA 992
Cdd:COG5022 1105 NRNL--VKPANVLQFIVAQMIKLNLLQEISKFLS--QLVNTLEPVFQKLSVLQLELDGLFWE--------ANLEALPSPP 1172
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 993 MEALASTEKMLQDKVNKT-SKERQQQVEAVELEAKEVLKKlfpkvsvpsnlSYSEWLHGFEKK--AKECMAGTSGSEevk 1069
Cdd:COG5022 1173 PFAALSEKRLYQSALYDEkSKLSSSEVNDLKNELIALFSK-----------IFSGWPRGDKLKklISEGWVPTEYST--- 1238
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1070 vlehKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTS---SEQELERLR 1146
Cdd:COG5022 1239 ----SLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRtkaSSLRWKSAT 1314
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1147 RENKDIENL-----RREREHLEMELEkaEMERSTYVTEVRelKDLLTELQKKLDDSYSEavrQNEELNLLKAQLNETLTK 1221
Cdd:COG5022 1315 EVNYNSEELddwcrEFEISDVDEELE--ELIQAVKVLQLL--KDDLNKLDELLDACYSL---NPAEIQNLKSRYDPADKE 1387
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 966954983 1222 LRTEQNERQKVAGDLHKAQQSLE-LIQSKIVKAAGDITVIENSDVSPETESSEKE 1275
Cdd:COG5022 1388 NNLPKEILKKIEALLIKQELQLSlEGKDETEVHLSEIFSEEKSLISLDRNSIYKE 1442
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
483-1163 |
7.57e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 7.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 483 QSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVI 562
Cdd:TIGR00618 190 KSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARI 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 563 AEKDKQIKQTEDSLA--NERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEE 640
Cdd:TIGR00618 270 EELRAQEAVLEETQEriNRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 641 QLQHEISNKMEefkilndQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQekdeKLKTVEELLETGLIQVATKEEELNA 720
Cdd:TIGR00618 350 LHSQEIHIRDA-------HEVATSIREISCQQHTLTQHIHTLQQQKTTLTQ----KLQSLCKELDILQREQATIDTRTSA 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 721 IRTENSSLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKE---KTVQDLKQEIKALKEE 797
Cdd:TIGR00618 419 FRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEqihLQETRKKAVVLARLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 798 IGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEVSS 877
Cdd:TIGR00618 499 LQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 878 ASQF-EELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDE-NKLFKSQIEQLKQQNYQQASSfPPHEELLKVIS 955
Cdd:TIGR00618 579 DNRSkEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEqDLQDVRLHLQQCSQELALKLT-ALHALQLTLTQ 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 956 EREKEISGLWNELDSLK--------DAVEHQRKKNNDLREKNWEAMEALASTEKMLQD------KVNKTSKERQQQVEAV 1021
Cdd:TIGR00618 658 ERVREHALSIRVLPKELlasrqlalQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEydrefnEIENASSSLGSDLAAR 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1022 ELEAKEVLKKLFPKVSVPSNLSYSEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEG 1101
Cdd:TIGR00618 738 EDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDED 817
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966954983 1102 ILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLE 1163
Cdd:TIGR00618 818 ILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLN 879
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
779-1002 |
7.78e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.23 E-value: 7.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 779 NKEKTVQDLKQ----EIKALKEEIGNVQLEKAQQLSIT-----SQVQELQNLLKGKEEQMNTMK-----AVLEEKEKDLA 844
Cdd:PRK05771 17 YKDEVLEALHElgvvHIEDLKEELSNERLRKLRSLLTKlsealDKLRSYLPKLNPLREEKKKVSvksleELIKDVEEELE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 845 NTGKWLQDLQEENESLKAHVQEVaQHNLKEVSSASQFEELEIVLKEKEN---ELKRVEAMLKERESDLSSKTKLLQDVQD 921
Cdd:PRK05771 97 KIEKEIKELEEEISELENEIKEL-EQEIERLEPWGNFDLDLSLLLGFKYvsvFVGTVPEDKLEELKLESDVENVEYISTD 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 922 ENKLF----------KSQIEQLKQQNYQQASsFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDL------ 985
Cdd:PRK05771 176 KGYVYvvvvvlkelsDEVEEELKKLGFERLE-LEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEEllalye 254
|
250 260
....*....|....*....|..
gi 966954983 986 -----REKNwEAMEALASTEKM 1002
Cdd:PRK05771 255 yleieLERA-EALSKFLKTDKT 275
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
364-594 |
1.59e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 364 VREQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDyarlvNELTEKTGKLQQEEVQKKNAEQAVTQLKVQL 443
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 444 QEAERRWEEVQSYIRKRTAEHEAAQQDlqskfvakeNEVQSLHSKLtdtlvskQQLEQRLMQLmeseQKRVNKEESlqmQ 523
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELLQS---------PVIQQLRAQL-------AELEAELAEL----SARYTPNHP---D 292
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966954983 524 VQDILEQNEALKAQIQQFHSQIAAQTSASVlaeelhKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQ 594
Cdd:COG3206 293 VIALRAQIAALRAQLQQEAQRILASLEAEL------EALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1076-1310 |
1.92e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1076 KEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENK----- 1150
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAkleae 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1151 ------DIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRT 1224
Cdd:TIGR02169 331 idkllaEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1225 EQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKE 1304
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
....*.
gi 966954983 1305 HYQVLE 1310
Cdd:TIGR02169 491 ELAEAE 496
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
638-973 |
1.99e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.20 E-value: 1.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 638 LEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQtlvsEQPNKDVVeQMEKCIQEK-DEKLKTVEELLETGLIQVATKEE 716
Cdd:TIGR01612 534 IKAKLYKEIEAGLKESYELAKNWKKLIHEIKKEL----EEENEDSI-HLEKEIKDLfDKYLEIDDEIIYINKLKLELKEK 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 717 ELNaIRTENSSLTKEVqdlkakqndqvsfaslveELKKVIHEKDGKIKSVEELLEAELLK-VANKEKTVQDLKQEikalk 795
Cdd:TIGR01612 609 IKN-ISDKNEYIKKAI------------------DLKKIIENNNAYIDELAKISPYQVPEhLKNKDKIYSTIKSE----- 664
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 796 eeignvqLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLqeENESLKAHVQEVaqHNLKEV 875
Cdd:TIGR01612 665 -------LSKIYEDDIDALYNELSSIVKENAIDNTEDKAKLDDLKSKIDKEYDKIQNM--ETATVELHLSNI--ENKKNE 733
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 876 SSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQAS-----------SF 944
Cdd:TIGR01612 734 LLDIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYNDQINidnikdedakqNY 813
|
330 340
....*....|....*....|....*....
gi 966954983 945 PPHEELLKVISEREKEISGLWNELDSLKD 973
Cdd:TIGR01612 814 DKSKEYIKTISIKEDEIFKIINEMKFMKD 842
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
342-574 |
2.69e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 45.60 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 342 AAVKEDAAATKDRCKQLTQFQQVR---EQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDY-------ARL 411
Cdd:NF012221 1538 SESSQQADAVSKHAKQDDAAQNALadkERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQrdaileeSRA 1617
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 412 VN-ELTEKTGKLQQEEVQKKNAEQAVTQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlT 490
Cdd:NF012221 1618 VTkELTTLAQGLDALDSQATYAGESGDQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-S 1694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 491 DTLVskQQLEQRLMQLMESEQKRVNKEESLQMQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKd 566
Cdd:NF012221 1695 EAGV--AQGEQNQANAEQDIDDAKADAEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA- 1769
|
....*...
gi 966954983 567 KQIKQTED 574
Cdd:NF012221 1770 KGAKQDES 1777
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
341-743 |
3.02e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 341 LAAVKEDAAATKDRCKQLTQFQQVREQMEAEIAHLKQENGILRDAVSNTTNQLEskqsaeLNKLRQDYARLVNELTEKTG 420
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ------LLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 421 KLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLE 500
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 501 QRLMQLmESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLAN-E 579
Cdd:COG4717 227 EELEQL-ENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEaE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 580 RDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLQHEISN----------- 648
Cdd:COG4717 306 ELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAllaeagvedee 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 649 -------KMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAI 721
Cdd:COG4717 386 elraaleQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
410 420
....*....|....*....|....
gi 966954983 722 RTEN--SSLTKEVQDLKAKQNDQV 743
Cdd:COG4717 466 EEDGelAELLQELEELKAELRELA 489
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1066-1310 |
3.10e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1066 EEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERL 1145
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1146 RRENKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTE 1225
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1226 QNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIensdvspETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKEH 1305
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAEL-------EEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
....*
gi 966954983 1306 YQVLE 1310
Cdd:COG1196 493 LLLLL 497
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
923-1212 |
3.56e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.01 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 923 NKLFKSQIEQLKQQnyqqassfppheellkvISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKM 1002
Cdd:PHA02562 169 DKLNKDKIRELNQQ-----------------IQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKT 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1003 LQDKVNktskERQQQVEAVELEAKEV---LKKLFPK-VSVPSNLSYSEWLHGFEKKAKECMAGTSGseevkvlehkLKEA 1078
Cdd:PHA02562 232 IKAEIE----ELTDELLNLVMDIEDPsaaLNKLNTAaAKIKSKIEQFQKVIKMYEKGGVCPTCTQQ----------ISEG 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1079 DEMhtllqleCEKYKSVLAETEGILQKLQRSVEQEENKwKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENlrre 1158
Cdd:PHA02562 298 PDR-------ITKIKDKLKELQHSLEKLDTAIDELEEI-MDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKA---- 365
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 966954983 1159 rehlemELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLK 1212
Cdd:PHA02562 366 ------AIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLK 413
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
621-1244 |
6.19e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 6.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 621 LEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEfKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTV 700
Cdd:PRK02224 182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLES-ELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 701 EELLETgliqVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLveelkkviheKDGKIKSVEELLEAELLKVANK 780
Cdd:PRK02224 261 EDLRET----IAETEREREELAEEVRDLRERLEELEEERDDLLAEAGL----------DDADAEAVEARREELEDRDEEL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 781 EKTVQDLKQEIKALKEEIGnvqlekaqqlSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESL 860
Cdd:PRK02224 327 RDRLEECRVAAQAHNEEAE----------SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 861 KAHVQEvaqhnlkevsSASQFEELEIVLKEKENELKRVEAMLKERESDLSSktklLQDVQDENKLFksqIEQLKQQNYQQ 940
Cdd:PRK02224 397 RERFGD----------APVDLGNAEDFLEELREERDELREREAELEATLRT----ARERVEEAEAL---LEAGKCPECGQ 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 941 ASSFPPHEEllkVISEREKEISGLWNELDSLKDAVEHqrkknndlREKNWEAMEALASTEKMLQdkvnkTSKERQQQVEA 1020
Cdd:PRK02224 460 PVEGSPHVE---TIEEDRERVEELEAELEDLEEEVEE--------VEERLERAEDLVEAEDRIE-----RLEERREDLEE 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1021 VELEAKEvlkklfpkvsvpsnlsysewlhGFEKKAKECmagTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETE 1100
Cdd:PRK02224 524 LIAERRE----------------------TIEEKRERA---EELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1101 GILQKLQRSVEQeenkwkvkvdeshktikqmqssftsseqeLERLRRENKDIENLRREREHLEMELE-KAEM--ERSTYV 1177
Cdd:PRK02224 579 SKLAELKERIES-----------------------------LERIRTLLAAIADAEDEIERLREKREaLAELndERRERL 629
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966954983 1178 TEVRELKDlltELQKKLDDSYSEAVRQN-EELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLE 1244
Cdd:PRK02224 630 AEKRERKR---ELEAEFDEARIEEAREDkERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE 694
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
382-1296 |
6.47e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 6.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 382 LRDAVSNTTNQLES-KQSAELNKLRQDYARLVNELTeKTGKLQQEEvQKKNAEQAVTQLKVQLQ-----EAERRWEEVQS 455
Cdd:TIGR01612 605 LKEKIKNISDKNEYiKKAIDLKKIIENNNAYIDELA-KISPYQVPE-HLKNKDKIYSTIKSELSkiyedDIDALYNELSS 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 456 YIRKR---TAEHEAAQQDLQSKFVAKENEVQSLHS---------------KLTDTLVSKQ-----QLEQRLMQLMESEQk 512
Cdd:TIGR01612 683 IVKENaidNTEDKAKLDDLKSKIDKEYDKIQNMETatvelhlsnienkknELLDIIVEIKkhihgEINKDLNKILEDFK- 761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 513 rvNKEESLQMQVQDILEQNEAL---KAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTedslanerdhLTSKEEE 589
Cdd:TIGR01612 762 --NKEKELSNKINDYAKEKDELnkyKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKT----------ISIKEDE 829
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 590 L-KDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIR--LLEEQLQHEISNKMEEFKILNDQNKALKLE 666
Cdd:TIGR01612 830 IfKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAELTNKIKaeISDDKLNDYEKKFNDSKSLINEINKSIEEE 909
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 667 VQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELL--------ETGLIQVATKEEELNAIRTENSSLTKEVQDLKAK 738
Cdd:TIGR01612 910 YQNINTLKKVDEYIKICENTKESIEKFHNKQNILKEILnknidtikESNLIEKSYKDKFDNTLIDKINELDKAFKDASLN 989
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 739 qndqvSFASLVEELKKVIHekDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLekAQQLSITSQVQEL 818
Cdd:TIGR01612 990 -----DYEAKNNELIKYFN--DLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEI--AIHTSIYNIIDEI 1060
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 819 QNLLKGKEEQMNTmkAVLEEKEKDLANTGKWLQDLQ---------EEN-------ESLKAHVQEVAQ---HNLKEVSS-- 877
Cdd:TIGR01612 1061 EKEIGKNIELLNK--EILEEAEINITNFNEIKEKLKhynfddfgkEENikyadeiNKIKDDIKNLDQkidHHIKALEEik 1138
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 878 ----------ASQFEELEIVL-------------KEKEN-------------ELKRVEAMLKERESDLSSKTKL----LQ 917
Cdd:TIGR01612 1139 kksenyideiKAQINDLEDVAdkaisnddpeeieKKIENivtkidkkkniydEIKKLLNEIAEIEKDKTSLEEVkginLS 1218
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 918 DVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVE------------HQRKKNN-- 983
Cdd:TIGR01612 1219 YGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMEtfnishdddkdhHIISKKHde 1298
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 984 ---DLREKNWEAMEA------LASTEKMLQDKVNKTSKERQQ------------------QVEAVELEAKEVLKKLFP-K 1035
Cdd:TIGR01612 1299 nisDIREKSLKIIEDfseesdINDIKKELQKNLLDAQKHNSDinlylneianiynilklnKIKKIIDEVKEYTKEIEEnN 1378
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1036 VSVPSNLSYSEWLhgfEKKAKEcmagTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEEN 1115
Cdd:TIGR01612 1379 KNIKDELDKSEKL---IKKIKD----DINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNEN 1451
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1116 ------KWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIEN-LRREREHLEMELEKAEMERSTYVTEVREL--KDL 1186
Cdd:TIGR01612 1452 vlllfkNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKgCKDEADKNAKAIEKNKELFEQYKKDVTELlnKYS 1531
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1187 LTELQKKLDDSYSEAVRQNEELNLLKAQL----NETLTKLRTEQNERQKVAGDLHK----------AQQSLELIQSKIVK 1252
Cdd:TIGR01612 1532 ALAIKNKFAKTKKDSEIIIKEIKDAHKKFileaEKSEQKIKEIKKEKFRIEDDAAKndksnkaaidIQLSLENFENKFLK 1611
|
1050 1060 1070 1080
....*....|....*....|....*....|....*....|....
gi 966954983 1253 AAgDITVIENsDVSPETESSEKETMSVSLNQTVTQLQQLLQAVN 1296
Cdd:TIGR01612 1612 IS-DIKKKIN-DCLKETESIEKKISSFSIDSQDTELKENGDNLN 1653
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
777-1195 |
7.55e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 7.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 777 VANKEKTVQDLKQEIKALKEEIGNVQL---EKAQQLSITS----QVQELQNLLKGKEEQMNTMKAV-LEEKEKDLANTGK 848
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLiidEKRQQLERLRrereKAERYQALLKEKREYEGYELLKeKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 849 WLQDLQEENESLKAHVQEVAQhnlkevssasQFEELEIVLKEKENELKRV----EAMLKERESDLSSKTKLLQDVQDENK 924
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEK----------RLEEIEQLLEELNKKIKDLgeeeQLRVKEKIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 925 lfksqiEQLKQQNYQQASSFPPHEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKnweaMEALASTEKMLQ 1004
Cdd:TIGR02169 315 ------RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE----LEEVDKEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1005 DKVnktsKERQQQVEAVELEAKEVLKKLFPKVsvpsnlsysewlhgfEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTL 1084
Cdd:TIGR02169 385 DEL----KDYREKLEKLKREINELKRELDRLQ---------------EELQRLSEELADLNAAIAGIEAKINELEEEKED 445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1085 LQLECEKyksvlaetegilqklqrsveQEENkwkvkvdeshktIKQMQSSFTSSEQELERLRRENKDIEnlrREREHLEM 1164
Cdd:TIGR02169 446 KALEIKK--------------------QEWK------------LEQLAADLSKYEQELYDLKEEYDRVE---KELSKLQR 490
|
410 420 430
....*....|....*....|....*....|.
gi 966954983 1165 ELEKAEMERSTYVTEVRELKDLLTELQKKLD 1195
Cdd:TIGR02169 491 ELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1095-1304 |
7.82e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 7.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1095 VLAETEGILQKLQRSVEQEENKWKVKVDESHKtikQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAEmers 1174
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAERYKELKAELREL---ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELE---- 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1175 tyvTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAA 1254
Cdd:TIGR02168 267 ---EKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 966954983 1255 GDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLLQAVNQQLTKEKE 1304
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
778-920 |
8.02e-04 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 43.70 E-value: 8.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 778 ANKEKTVQDLKQEIKALKEEIGNVQLEKAQQL-SITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEE 856
Cdd:PRK00106 68 ALKKELLLEAKEEARKYREEIEQEFKSERQELkQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQ 147
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966954983 857 NESLkahvQEVAQHNLKEVSSASQFEELEIVLKEKENEL--------KRVEAMLKEReSDLSSKTKLLQDVQ 920
Cdd:PRK00106 148 VEKL----EEQKKAELERVAALSQAEAREIILAETENKLtheiatriREAEREVKDR-SDKMAKDLLAQAMQ 214
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
316-552 |
8.47e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 8.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 316 QDALKKSSKGELTTLVHQLQEKDKLLAAVKEDAAATKDRCKQLTQ-----------FQQVREQMEAEIAHLKQEngilrd 384
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERriaalarriraLEQELAALEAELAELEKE------ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 385 avsnttnqlESKQSAELNKLRQDYARLVNELtEKTGKLQQEEV--QKKNAEQAVTQLkvqlqeaeRRWEEVQSYIRKRTA 462
Cdd:COG4942 92 ---------IAELRAELEAQKEELAELLRAL-YRLGRQPPLALllSPEDFLDAVRRL--------QYLKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 463 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFH 542
Cdd:COG4942 154 ELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
250
....*....|
gi 966954983 543 SQIAAQTSAS 552
Cdd:COG4942 234 AEAAAAAERT 243
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
882-979 |
8.81e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 8.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 882 EELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQassfppHEELLKVISEREKE- 960
Cdd:PRK12704 71 NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKK------EEELEELIEEQLQEl 144
|
90 100
....*....|....*....|....*..
gi 966954983 961 --ISGLWNE------LDSLKDAVEHQR 979
Cdd:PRK12704 145 erISGLTAEeakeilLEKVEEEARHEA 171
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
684-976 |
8.90e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 8.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 684 EQMEK--CIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTEN-SSLTKEVQDLKAKQNDQVSFASLVEELKKVIhekd 760
Cdd:PRK05771 4 VRMKKvlIVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKV---- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 761 gKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKeeqmnTMKAVLEEKE 840
Cdd:PRK05771 80 -SVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFDLDLSLLLGFK-----YVSVFVGTVP 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 841 KDlantgkwlQDLQEENESLKAHVQEVAQHNLKE----VSSASQFEELEIVLkeKENELKRVEAmlkereSDLSSKTKLL 916
Cdd:PRK05771 154 ED--------KLEELKLESDVENVEYISTDKGYVyvvvVVLKELSDEVEEEL--KKLGFERLEL------EEEGTPSELI 217
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 917 QDVQDENKLFKSQIEQLKqqnyqqassfpphEELLKVISEREKEISGLWNELDSLKDAVE 976
Cdd:PRK05771 218 REIKEELEEIEKERESLL-------------EELKELAKKYLEELLALYEYLEIELERAE 264
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
465-964 |
9.01e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 9.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 465 EAAQQDLQSKfvakENEVQSLHSKLtDTLVSKQQ-LEQRLMQLMESEQKRVNKEESLQMQVQDI---LEQNEALKAQIQQ 540
Cdd:pfam10174 292 DQLKQELSKK----ESELLALQTKL-ETLTNQNSdCKQHIEVLKESLTAKEQRAAILQTEVDALrlrLEEKESFLNKKTK 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 541 FHSQIAAQTSAsvLAEELHKV---IAEKDKQIKQTEDSLANERDHLTSKEEELKDiqnmnflLKAEVQKLQALANEQAAA 617
Cdd:pfam10174 367 QLQDLTEEKST--LAGEIRDLkdmLDVKERKINVLQKKIENLQEQLRDKDKQLAG-------LKERVKSLQTDSSNTDTA 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 618 aheLEKMQQSVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVSEQ-----PNKDVVEQMEKCIQE 692
Cdd:pfam10174 438 ---LTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKessliDLKEHASSLASSGLK 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 693 KDEKLKTVEelletglIQVATKEEElnAIRTENSSLTKEVQDLKAKQNDQVSfaslveelkkvihekdgkiksveellea 772
Cdd:pfam10174 515 KDSKLKSLE-------IAVEQKKEE--CSKLENQLKKAHNAEEAVRTNPEIN---------------------------- 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 773 ellkvankeKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLlkgKEEQMNTMKAVLEEKEKDLANTGKWLQD 852
Cdd:pfam10174 558 ---------DRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKND---KDKKIAELESLTLRQMKEQNKKVANIKH 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 853 LQEENESLKAHVQEVA---QHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQ 929
Cdd:pfam10174 626 GQQEMKKKGAQLLEEArrrEDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEE 705
|
490 500 510
....*....|....*....|....*....|....*
gi 966954983 930 IEQLKQqnyqqassfpphEELLKVISEREKEISGL 964
Cdd:pfam10174 706 ILEMKQ------------EALLAAISEKDANIALL 728
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
421-591 |
9.35e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 9.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 421 KLQQEEVQKKNAEQaVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSkfvakENEVQSLHskltdtlvskQQLE 500
Cdd:PRK04863 501 LLRRLREQRHLAEQ-LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD-----EDELEQLQ----------EELE 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 501 QRLMQLmeSEQKRVNKEEslQMQVQDILEQneaLKAQIQQFHSQ----IAAQTSASVLAEELHKVIAEK---DKQIKQT- 572
Cdd:PRK04863 565 ARLESL--SESVSEARER--RMALRQQLEQ---LQARIQRLAARapawLAAQDALARLREQSGEEFEDSqdvTEYMQQLl 637
|
170 180
....*....|....*....|.
gi 966954983 573 --EDSLANERDHLTSKEEELK 591
Cdd:PRK04863 638 erERELTVERDELAARKQALD 658
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
727-1261 |
1.46e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 727 SLTKEVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIK---ALKEEIGNVQL 803
Cdd:PRK01156 177 MLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNelsSLEDMKNRYES 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 804 EKAQQLSITSQVQELQNLLKGKEEQMN--TMKAVLEEKEK--DLANTGKWLQDLQEENESLKAHVQEVaQHNLKEVSSAS 879
Cdd:PRK01156 257 EIKTAESDLSMELEKNNYYKELEERHMkiINDPVYKNRNYinDYFKYKNDIENKKQILSNIDAEINKY-HAIIKKLSVLQ 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 880 QFEELEIVLKEKENELKRVEAMLKERESDLSS--------KTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELL 951
Cdd:PRK01156 336 KDYNDYIKKKSRYDDLNNQILELEGYEMDYNSylksieslKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEIN 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 952 KVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVNKTSKER---QQQVEAVELEAKEV 1028
Cdd:PRK01156 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKsrlEEKIREIEIEVKDI 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1029 LKKLFPKVSVPSNLSYSEwlhgFEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAEtegilqklqr 1108
Cdd:PRK01156 496 DEKIVDLKKRKEYLESEE----INKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLE---------- 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1109 SVEQEENKW-KVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIE-NLRREREHLEMELEKAEMERSTY---VTEVREL 1183
Cdd:PRK01156 562 DLDSKRTSWlNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEiGFPDDKSYIDKSIREIENEANNLnnkYNEIQEN 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1184 KDLLTELQKKLDDSYSEAVRQNE---ELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVI 1260
Cdd:PRK01156 642 KILIEKLRGKIDNYKKQIAEIDSiipDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDI 721
|
.
gi 966954983 1261 E 1261
Cdd:PRK01156 722 N 722
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
690-868 |
2.06e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 690 IQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQvsfASLVEELKKVIHEKDGKIKSVEel 769
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL---ELEIEEVEARIKKYEEQLGNVR-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 770 leaellkvanKEKTVQDLKQEIKALKEEIGnvQLEKaQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTgkw 849
Cdd:COG1579 87 ----------NNKEYEALQKEIESLKRRIS--DLED-EILELMERIEELEEELAELEAELAELEAELEEKKAELDEE--- 150
|
170
....*....|....*....
gi 966954983 850 LQDLQEENESLKAHVQEVA 868
Cdd:COG1579 151 LAELEAELEELEAEREELA 169
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1072-1213 |
2.19e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1072 EHKLKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVE--QEENK-WKVKVDESHKTIKQMQSSFTSSEQELERLRRE 1148
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVErlEAEVEeLEAELEEKDERIERLERELSEARSEERREIRK 463
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966954983 1149 NKDIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQ-------KKLDDSYSEAVRQNEELNLLKA 1213
Cdd:COG2433 464 DREISRLDREIERLERELEEERERIEELKRKLERLKELWKLEHsgelvpvKVVEKFTKEAIRRLEEEYGLKE 535
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
851-1027 |
2.20e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 851 QDLQEENESLKAHVQEVAQHNLKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQI 930
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 931 EQLKQQNYQQASSFPP------------------HEELLKVISEREKEISGLWNELDSLKDAVEHQRKKNNDLREKNWEA 992
Cdd:COG4942 107 AELLRALYRLGRQPPLalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190
....*....|....*....|....*....|....*.
gi 966954983 993 MEALASTEKMLQDKVNKTSKER-QQQVEAVELEAKE 1027
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELaELAAELAELQQEA 222
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
878-1181 |
2.23e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 2.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 878 ASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIE-QLKQQNYQQASSFPPHEELLKviSE 956
Cdd:pfam17380 333 AAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMErQQKNERVRQELEAARKVKILE--EE 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 957 REKEISGLWNELDSLKDAVEHQRKknndlreknwEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVLKKLFPKV 1036
Cdd:pfam17380 411 RQRKIQQQKVEMEQIRAEQEEARQ----------REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELE 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1037 SVPSnlsysewlhgfEKKAKECMAGTSGSEEVKVLEHKLKEADEMHTLLQLECEKYKSVLAETEgilqklQRSVEQEENK 1116
Cdd:pfam17380 481 KEKR-----------DRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEE------RRREAEEERR 543
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966954983 1117 WKVKVDESHKTIKQMQSSfTSSEQELERLRRENKDIenlrreREHLEMELEKAEMERSTYVTEVR 1181
Cdd:pfam17380 544 KQQEMEERRRIQEQMRKA-TEERSRLEAMEREREMM------RQIVESEKARAEYEATTPITTIK 601
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1139-1310 |
2.73e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1139 EQELERLRrenkDIEN-LRREREHLEMELEKAEmerstyvtEVRELKDLLTELQ-----KKLDDSYSEAVRQNEELNLLK 1212
Cdd:COG1196 185 EENLERLE----DILGeLERQLEPLERQAEKAE--------RYRELKEELKELEaelllLKLRELEAELEELEAELEELE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1213 AQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQTVTQLQQLL 1292
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEEL 332
|
170
....*....|....*...
gi 966954983 1293 QAVNQQLTKEKEHYQVLE 1310
Cdd:COG1196 333 EELEEELEELEEELEEAE 350
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
697-1250 |
2.90e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 697 LKTVEELLETGLIQVATKEEELNAIRTENSSLTK---------------EVQDLKAKQNDQVSFASLVEELKKVIHE--K 759
Cdd:PTZ00121 1026 IEKIEELTEYGNNDDVLKEKDIIDEDIDGNHEGKaeakahvgqdeglkpSYKDFDFDAKEDNRADEATEEAFGKAEEakK 1105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 760 DGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNvQLEKAQQLSITSQVQELQNL-LKGKEEQMNTMKAVLEE 838
Cdd:PTZ00121 1106 TETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEAR-KAEDAKRVEIARKAEDARKAeEARKAEDAKKAEAARKA 1184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 839 KEKDLANTGKWLQDLQEENESLKAHVQEVAQhnlkEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQD 918
Cdd:PTZ00121 1185 EEVRKAEELRKAEDARKAEAARKAEEERKAE----EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 919 VQDENKLFKSQI---EQLKQQNYQQASSFPPHEELLKVISERE----KEISGLWNELDSLKDAVEHQRKKNNDLREKNWE 991
Cdd:PTZ00121 1261 RMAHFARRQAAIkaeEARKADELKKAEEKKKADEAKKAEEKKKadeaKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 992 AM---EALASTEKMLQDKVNKTSK----------ERQQQVEAVELEAKEVLKKLFPKVSVPSNLSYSEWLHGFEKKAKEC 1058
Cdd:PTZ00121 1341 AKkaaEAAKAEAEAAADEAEAAEEkaeaaekkkeEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1059 MAGTSGSEEVKVLEHKLKEADEMHTllQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSS 1138
Cdd:PTZ00121 1421 DEAKKKAEEKKKADEAKKKAEEAKK--ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1139 EQELERLRRENKDIENLRREREHLEM-ELEKAEMERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEE---------L 1208
Cdd:PTZ00121 1499 ADEAKKAAEAKKKADEAKKAEEAKKAdEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEakkaeedknM 1578
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 966954983 1209 NLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLELIQSKI 1250
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
399-972 |
2.95e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 399 AELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTaeheaAQQDLQSKFVAK 478
Cdd:PRK01156 183 SNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELS-----SLEDMKNRYESE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 479 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMES----EQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAqtsasvl 554
Cdd:PRK01156 258 IKTAESDLSMELEKNNYYKELEERHMKIINDpvykNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKK------- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 555 AEELHKVIAEKDKQIKQTEDsLANERDHLTSKEEE----LKDIQNMNfllkaevQKLQALANEQAAAAHELEKMQQSVYV 630
Cdd:PRK01156 331 LSVLQKDYNDYIKKKSRYDD-LNNQILELEGYEMDynsyLKSIESLK-------KKIEEYSKNIERMSAFISEILKIQEI 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 631 KDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTlvseqpNKDVVEQMEKC----IQEKDEKLKTVeellet 706
Cdd:PRK01156 403 DPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSR------NMEMLNGQSVCpvcgTTLGEEKSNHI------ 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 707 gliqVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLV--EELKKVIHEkDGKIKSveelLEAELLKVANKEKTV 784
Cdd:PRK01156 471 ----INHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLesEEINKSINE-YNKIES----ARADLEDIKIKINEL 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 785 QDLKQEIKALKEEIGNVQLEkaqqlSITSQVQELQNLLKGKEE-QMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAH 863
Cdd:PRK01156 542 KDKHDKYEEIKNRYKSLKLE-----DLDSKRTSWLNALAVISLiDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 864 VQEVAQHNLKEVSS----ASQFEELEIV---LKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQ 936
Cdd:PRK01156 617 IDKSIREIENEANNlnnkYNEIQENKILiekLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKAN 696
|
570 580 590
....*....|....*....|....*....|....*.
gi 966954983 937 NYQQASSfppHEELLKVISEREKEISGLWNELDSLK 972
Cdd:PRK01156 697 RARLEST---IEILRTRINELSDRINDINETLESMK 729
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
421-754 |
3.11e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.81 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 421 KLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 500
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 501 QRLMQLmesEQKRVNKEEslqmQVQDILEQNEALKAQIQQFHSQIAAQTSASVLA--EELHKVIAEK--DKQIKQTEDSL 576
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAaqEKIHVEILEEqlEKLRNELLIRG 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 577 ANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLLEEQLqheISNKMEEFKIL 656
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 657 NDQNKALKLEVQKLQTLVSEQPNKdvVEQMEKCIQEKDEKLKTVEELLET--------------GLIQVATK--EEELNA 720
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQDLRDKVDKLEASlkeanvskfssykvELLQQKLKllEERLQA 369
|
330 340 350
....*....|....*....|....*....|....
gi 966954983 721 IRTENSSLTKEVQDLKAKQNDQVSfaSLVEELKK 754
Cdd:PLN02939 370 SDHEIHSYIQLYQESIKEFQDTLS--KLKEESKK 401
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1084-1298 |
3.86e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1084 LLQLECEKYKSVLAETEGILQKLQRSVEQEEnkwkvkvdeshKTIKQMQSSFTSSEQELERLRRE----NKDIENLRRER 1159
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELE-----------KELAALKKEEKALLKQLAALERRiaalARRIRALEQEL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1160 EHLEMELEKAEMERSTYVTEVRELKDLLTELQKKL--------------DDSYSEAVRQNEELNLLKAQLNETLTKLRTE 1225
Cdd:COG4942 79 AALEAELAELEKEIAELRAELEAQKEELAELLRALyrlgrqpplalllsPEDFLDAVRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966954983 1226 QNERQKVAGDLHKAQQSLELIQSKIVKAAGDItviensdvspETESSEKETMSVSLNQTVTQLQQLLQAVNQQ 1298
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAAL----------EALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
514-941 |
3.96e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 514 VNKEESLQMQVQDILEQNEALKAQIQQF-HSQIAAQTSASvlAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKD 592
Cdd:COG4717 15 RDRTIEFSPGLNVIYGPNEAGKSTLLAFiRAMLLERLEKE--ADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 593 IQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQsVYVKDDKIRLLEEQLQH------EISNKMEEFKILNDQNKALKLE 666
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKLEKLLQ-LLPLYQELEALEAELAElperleELEERLEELRELEEELEELEAE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 667 VQKLQTLVSEQPNkDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQ---- 742
Cdd:COG4717 172 LAELQEELEELLE-QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKearl 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 743 --------VSFASLVEELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSIT-- 812
Cdd:COG4717 251 llliaaalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALgl 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 813 -------------SQVQELQNLLKGKEEQMNTMKAVLEEKEK-------------DLANTGKWLQDLQEENESLKAHVQE 866
Cdd:COG4717 331 ppdlspeellellDRIEELQELLREAEELEEELQLEELEQEIaallaeagvedeeELRAALEQAEEYQELKEELEELEEQ 410
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966954983 867 VAQHN--LKEVSSASQFEELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQDENKLF--KSQIEQLKQQNYQQA 941
Cdd:COG4717 411 LEELLgeLEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAelLQELEELKAELRELA 489
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
523-901 |
4.13e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.59 E-value: 4.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 523 QVQDILEQNEALKAQIQQFHSQI-AAQTSASVLAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLK 601
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIeNRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 602 AEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIRLleEQLQHEISNKMEEFK----ILNDQNKALKLEVQKLQTLVSEQ 677
Cdd:TIGR02169 758 SELKELEARIEELEEDLHKLEEALNDLEARLSHSRI--PEIQAELSKLEEEVSrieaRLREIEQKLNRLTLEKEYLEKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 678 PNKdvVEQMEKCIQEKDEKLKTVEELLetglIQVATKEEELNAIRTENSSLTKEVQDLKAKqndqvsfaslVEELKKVIH 757
Cdd:TIGR02169 836 QEL--QEQRIDLKEQIKSIEKEIENLN----GKKEELEEELEELEAALRDLESRLGDLKKE----------RDELEAQLR 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 758 EKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLlkgkEEQMNTMKAV-- 835
Cdd:TIGR02169 900 ELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRV----EEEIRALEPVnm 975
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 836 -----LEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQ--------------HNLKEV------SSASQFEE------- 883
Cdd:TIGR02169 976 laiqeYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKkkrevfmeafeainENFNEIfaelsgGTGELILEnpddpfa 1055
|
410 420
....*....|....*....|
gi 966954983 884 --LEIVLKEKENELKRVEAM 901
Cdd:TIGR02169 1056 ggLELSAKPKGKPVQRLEAM 1075
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
783-1031 |
5.01e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.44 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 783 TVQDLKQEIKALKEEignvQLEKAQQLSITSQVQELQNLLKGKEEQmntmKAVLEEKEKDLANTGKWLQDLQEENESLKA 862
Cdd:PRK11281 37 TEADVQAQLDALNKQ----KLLEAEDKLVQQDLEQTLALLDKIDRQ----KEETEQLKQQLAQAPAKLRQAQAELEALKD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 863 HVQEVAQHNLKEVSSAsqfeELEIVLKEKENELKRVEAMLKERESDLSSKTKLLQDVQdeNKLFKSQiEQLKQQNYQQAS 942
Cdd:PRK11281 109 DNDEETRETLSTLSLR----QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQ--AALYANS-QRLQQIRNLLKG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 943 SFPPHEELlkviseREKEISGLWNELDSLKDAVEHQRK--KNND-----LREKNWEAMEALASTEKM---LQDKVN---- 1008
Cdd:PRK11281 182 GKVGGKAL------RPSQRVLLQAEQALLNAQNDLQRKslEGNTqlqdlLQKQRDYLTARIQRLEHQlqlLQEAINskrl 255
|
250 260
....*....|....*....|....*..
gi 966954983 1009 ----KTSKERQQQVEAVELEAKEVLKK 1031
Cdd:PRK11281 256 tlseKTVQEAQSQDEAARIQANPLVAQ 282
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
509-1297 |
5.06e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 509 SEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEE 588
Cdd:TIGR00606 166 SEGKALKQKFDEIFSATRYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYEN 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 589 ELKDIQNmnfllkaevqklqalaneqaaAAHELEKMQQSVYVKDDKIRLLEEQlqheisnkmeefkilndqnkalKLEVQ 668
Cdd:TIGR00606 246 ELDPLKN---------------------RLKEIEHNLSKIMKLDNEIKALKSR----------------------KKQME 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 669 KLqtlvseqpNKDVVEQMEKCIQEKDEKLKTVEELLETgliQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASL 748
Cdd:TIGR00606 283 KD--------NSELELKMEKVFQGTDEQLNDLYHNHQR---TVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGR 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 749 VEELKKVIHEK-----------------DGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALKEEIGNVQLEKAQQLSI 811
Cdd:TIGR00606 352 LQLQADRHQEHirardsliqslatrlelDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEI 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 812 TSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQhnLKEVSSASQFEELEIVLKEK 891
Cdd:TIGR00606 432 RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSK--AEKNSLTETLKKEVKSLQNE 509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 892 ENELKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQ-------QASSFPPHEELLKVISEREKEISGL 964
Cdd:TIGR00606 510 KADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRhsdeltsLLGYFPNKKQLEDWLHSKSKEINQT 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 965 WNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLQDKVnkTSKERQQQVEAVELEAKEVLKKLFPkVSVPSNLsY 1044
Cdd:TIGR00606 590 RDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVC--GSQDEESDLERLKEEIEKSSKQRAM-LAGATAV-Y 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1045 SEWLHGFEKKAKECMAGTSGSEEVKvlehklKEADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENKWKVKVDES 1124
Cdd:TIGR00606 666 SQFITQLTDENQSCCPVCQRVFQTE------AELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSII 739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1125 HKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAEmERSTYVTEVRELKDLLTELQKKLDDSYSEAvrQ 1204
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK-VCLTDVTIMERFQMELKDVERKIAQQAAKL--Q 816
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1205 NEELNLLKAQLNEtltKLRTEQNERQKVAGDLHKAQQSLELIQSKIVKAAGDITVIENSDVSPETESSEKETMSVSLNQT 1284
Cdd:TIGR00606 817 GSDLDRTVQQVNQ---EKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVEL 893
|
810
....*....|...
gi 966954983 1285 VTQLQQLLQAVNQ 1297
Cdd:TIGR00606 894 STEVQSLIREIKD 906
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
1136-1225 |
5.37e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 5.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1136 TSSEQELERLRREnkdIENLRREREHLEMELEKAEMER-STYVTEVRELKDLLTELQKK-----------------LDDS 1197
Cdd:COG0542 407 DSKPEELDELERR---LEQLEIEKEALKKEQDEASFERlAELRDELAELEEELEALKARweaekelieeiqelkeeLEQR 483
|
90 100
....*....|....*....|....*...
gi 966954983 1198 YSEAVRQNEELNLLKAQLNETLTKLRTE 1225
Cdd:COG0542 484 YGKIPELEKELAELEEELAELAPLLREE 511
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
927-1244 |
5.53e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 40.88 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 927 KSQIEQLKQQNYQQASSFppheellkviserEKEISGLWNELDSLKDAVEHQRKKNNDL-------REKNWEAMEALAST 999
Cdd:pfam05557 8 KARLSQLQNEKKQMELEH-------------KRARIELEKKASALKRQLDRESDRNQELqkrirllEKREAEAEEALREQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1000 EKMLQ--DKVNKTSKERQQQVEAVELEAKEVLKKLFPKVSvpsnlsysEWLHGFEKKAKECMAGTSGSEEVKVLEHKLKE 1077
Cdd:pfam05557 75 AELNRlkKKYLEALNKKLNEKESQLADAREVISCLKNELS--------ELRRQIQRAELELQSTNSELEELQERLDLLKA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1078 ADEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEENkWKVKVdeshKTIKQMQSSFTSSEQELERLRRENK------- 1150
Cdd:pfam05557 147 KASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQ-DSEIV----KNSKSELARIPELEKELERLREHNKhlnenie 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1151 DIENLRREREHLEMELEKAEMERSTYVTEVRELKDLLTELQ--KKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNE 1228
Cdd:pfam05557 222 NKLLLKEEVEDLKRKLEREEKYREEAATLELEKEKLEQELQswVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSS 301
|
330
....*....|....*.
gi 966954983 1229 RQKVAGDLHKAQQSLE 1244
Cdd:pfam05557 302 LTSSARQLEKARRELE 317
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
384-594 |
5.56e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 384 DAVSNTTNQLESKQsAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRtae 463
Cdd:COG3883 16 PQIQAKQKELSELQ-AELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER--- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 464 heAAQQDLQSKFVAKENEVqsLHSKLTDTLVSKQQLeqrLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQfhs 543
Cdd:COG3883 92 --ARALYRSGGSVSYLDVL--LGSESFSDFLDRLSA---LSKIADADADLLEELKADKAELEAKKAELEAKLAELEA--- 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 966954983 544 qiaAQTSASVLAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQ 594
Cdd:COG3883 162 ---LKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
782-1261 |
6.11e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 782 KTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQVQELQNLLKGKEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLK 861
Cdd:PRK02224 206 ERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 862 AHVQEVAQHNlKEVSSASQFEELEIvlkekenelKRVEAMLKERESDLSSKTKLLQDVQDENKLFKSQIEQLKQQNYQqa 941
Cdd:PRK02224 286 ERLEELEEER-DDLLAEAGLDDADA---------EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADD-- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 942 ssfppHEELLKVISEREKEisgLWNELDSLKDAVEHQRKKNNDLREKNWEAMEALASTEKMLqDKVNKTSKERQQQVEAV 1021
Cdd:PRK02224 354 -----LEERAEELREEAAE---LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDL-GNAEDFLEELREERDEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1022 ELEAKEVLKKLfpkVSVPSNLSYSEWLHGfEKKAKECMAGTSGSEEVKVLEHKLKEADEmhtlLQLECEKYKSVLAETEG 1101
Cdd:PRK02224 425 REREAELEATL---RTARERVEEAEALLE-AGKCPECGQPVEGSPHVETIEEDRERVEE----LEAELEDLEEEVEEVEE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1102 ILQKLQRSVEQEE--NKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRRERE------HLEMELEKAEM-- 1171
Cdd:PRK02224 497 RLERAEDLVEAEDriERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKReaaaeaEEEAEEAREEVae 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1172 --ERSTYVTEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGD-----LHKAQQSLE 1244
Cdd:PRK02224 577 lnSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfdearIEEAREDKE 656
|
490
....*....|....*..
gi 966954983 1245 LIQSKIVKAAGDITVIE 1261
Cdd:PRK02224 657 RAEEYLEQVEEKLDELR 673
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
390-734 |
6.24e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 390 TNQLESKQSAELNKLRQDYARLVNELTEKTGKLQQEEVQKKNAEQAVTQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQ 469
Cdd:COG4372 22 TGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 470 DLQSkfvaKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRVNKEESLQMQVQDILEQNEALKAQIQQFHSQIAAQT 549
Cdd:COG4372 102 ELES----LQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 550 SA---SVLAEELHKVIAEKDKQIKQTEDSLANERDHLTSKEEELKDIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQ 626
Cdd:COG4372 178 EAeaeQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVIL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 627 SVYVKDDKIRLLEEQLQHEISNKMEEFKILNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLET 706
Cdd:COG4372 258 KEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLA 337
|
330 340
....*....|....*....|....*...
gi 966954983 707 GLIQVATKEEELNAIRTENSSLTKEVQD 734
Cdd:COG4372 338 ELADLLQLLLVGLLDNDVLELLSKGAEA 365
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
432-547 |
6.65e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.42 E-value: 6.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 432 AEQAVTQLKVQLQEAERRWEEVQSYI--RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 509
Cdd:COG1566 81 LQAALAQAEAQLAAAEAQLARLEAELgaEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAALDAA 160
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 966954983 510 EQKRVNKEESLQMQVQDILEQNE--ALKAQIQQFHSQIAA 547
Cdd:COG1566 161 QAQLEAAQAQLAQAQAGLREEEElaAAQAQVAQAEAALAQ 200
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
887-1244 |
6.76e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 6.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 887 VLKEKENELKRVEAMLKERESD-----LSSKTKLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELLKVISEREKEI 961
Cdd:PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKdlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 962 SGL-------WNELDSLKDAVEHQRKKNNDLREknwEAMEALASTEkmLQDKVNKTSKERQQQVEAVELEAKEVLKKLFP 1034
Cdd:PRK02224 261 EDLretiaetEREREELAEEVRDLRERLEELEE---ERDDLLAEAG--LDDADAEAVEARREELEDRDEELRDRLEECRV 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1035 KVSVPSNL--SYSEWLHGFEKKAKECmagtsgSEEVKVLEHKLKEADEmhtllqlECEKYKSVLAETEGILQKLQ----- 1107
Cdd:PRK02224 336 AAQAHNEEaeSLREDADDLEERAEEL------REEAAELESELEEARE-------AVEDRREEIEELEEEIEELRerfgd 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1108 ----------RSVEQEENKwkvkvDESHKTIKQMQSSFTSSE---QELERLRRENK---------------DIENLRRER 1159
Cdd:PRK02224 403 apvdlgnaedFLEELREER-----DELREREAELEATLRTARervEEAEALLEAGKcpecgqpvegsphveTIEEDRERV 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1160 EHLEMELEKAEMERSTYVTEVRELKDLltelqkklddsySEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKA 1239
Cdd:PRK02224 478 EELEAELEDLEEEVEEVEERLERAEDL------------VEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRER 545
|
....*
gi 966954983 1240 QQSLE 1244
Cdd:PRK02224 546 AAELE 550
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1015-1249 |
6.81e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 6.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1015 QQQVEAVElEAKEVLKKlfPKVSvPSNLSysEWLHGFEKKAKEcmagtsGSEEVKVLEHKLKEADEMHTllqleceKYKS 1094
Cdd:COG3096 416 QQAVQALE-KARALCGL--PDLT-PENAE--DYLAAFRAKEQQ------ATEEVLELEQKLSVADAARR-------QFEK 476
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1095 VLAETEGILQKLQRSVEQEENKWKVKVDESHKTIKQMQSSFTSSEQELERLRRENKDIENLRRE-----------REHLE 1163
Cdd:COG3096 477 AYELVCKIAGEVERSQAWQTARELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEfcqrigqqldaAEELE 556
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1164 MELEKAEMERSTYVTEVRELKDLLTELQKKLDD---SYSEAVRQ-------NEELNLLKAQLNETLTKLRTEQNERQKVA 1233
Cdd:COG3096 557 ELLAELEAQLEELEEQAAEAVEQRSELRQQLEQlraRIKELAARapawlaaQDALERLREQSGEALADSQEVTAAMQQLL 636
|
250
....*....|....*.
gi 966954983 1234 GDLHKAQQSLELIQSK 1249
Cdd:COG3096 637 EREREATVERDELAAR 652
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
806-1196 |
7.56e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.66 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 806 AQQLSITSQVQELQNLlkgkEEQMNTMKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEVSSASQFEELE 885
Cdd:PRK01156 149 AQRKKILDEILEINSL----ERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLS 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 886 IVLKEKENELKRVEAMLKERESDLSSKTKLLQDVqdenKLFKSQIEQLKQQNYQQASSFPPHEELL--KVISEREkEISG 963
Cdd:PRK01156 225 IEYNNAMDDYNNLKSALNELSSLEDMKNRYESEI----KTAESDLSMELEKNNYYKELEERHMKIIndPVYKNRN-YIND 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 964 LWNELDSLKDAVEHQRKKNNDLrEKNWEAMEALASTEKMLQDKVNKTSKERQQQVEAVELEAKEVLKKLFpkvsVPSNLS 1043
Cdd:PRK01156 300 YFKYKNDIENKKQILSNIDAEI-NKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSY----LKSIES 374
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1044 YSEWLHGFEKKAKECMAGTSGSEEVKVL--EHKLKEADEMHTLLQLECEKYKSVLAETEGILQK---LQRSVEQEENKWK 1118
Cdd:PRK01156 375 LKKKIEEYSKNIERMSAFISEILKIQEIdpDAIKKELNEINVKLQDISSKVSSLNQRIRALRENldeLSRNMEMLNGQSV 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1119 VKV-------DESHKTIKQMQSSFTSSEQELERLRRENKDIENLRREREHLEMELEKAEMERstYVTEVRELKDLLTELQ 1191
Cdd:PRK01156 455 CPVcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINK--SINEYNKIESARADLE 532
|
....*
gi 966954983 1192 KKLDD 1196
Cdd:PRK01156 533 DIKIK 537
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
507-812 |
8.00e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.61 E-value: 8.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 507 MESEQKR-VNKEESLQMQVQDILEQNEALKAQIQQfHSQIAAQTSASVLAEELHKVIAEKDKQIKQTEDSLANERDHLTS 585
Cdd:PLN03229 413 VDPERKVnMKKREAVKTPVRELEGEVEKLKEQILK-AKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENL 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 586 KEEELK---DIQNMNFLLKAEVQKLQALANEQAAAAHELEKMQQSVYVKDDKIR---LLE-----EQLQHEISNKMEEFK 654
Cdd:PLN03229 492 REEFSKansQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRakaLSEkkskaEKLKAEINKKFKEVM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 655 I---LNDQNKALKLEVQKLQTLVSEQPNKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELnAIRTENSSLTKE 731
Cdd:PLN03229 572 DrpeIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDT-AEQTPPPNLQEK 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 732 VQDLKAKQNDQVSFASLVEELKKVIHEkdgkiKSVEELLEAELLKVANKEKtVQDLKQEIK----------ALKEEIGNV 801
Cdd:PLN03229 651 IESLNEEINKKIERVIRSSDLKSKIEL-----LKLEVAKASKTPDVTEKEK-IEALEQQIKqkiaealnssELKEKFEEL 724
|
330
....*....|.
gi 966954983 802 QLEKAQQLSIT 812
Cdd:PLN03229 725 EAELAAARETA 735
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
578-1245 |
8.88e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 8.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 578 NERDHLTSKEEELKDIQNMNFLLKAE-----VQKLQALANEQAAAAHELEKMQQSVYVKDD----KIRLLEEQLQHEISN 648
Cdd:pfam12128 150 NDRTLLGRERVELRSLARQFALCDSEsplrhIDKIAKAMHSKEGKFRDVKSMIVAILEDDGvvppKSRLNRQQVEHWIRD 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 649 KMEEFKILNDQNKALKLEVQ---------KLQTLVSEQpnKDVVEQMEKCIQEKDEKLKTVEELLETGLIQVATKEEELN 719
Cdd:pfam12128 230 IQAIAGIMKIRPEFTKLQQEfntlesaelRLSHLHFGY--KSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELN 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 720 A-IRTENSSLTK------------------EVQDLKAKQNDQVSFASLVEELKKVIHEKDGKIKSVEELLEaellkvANK 780
Cdd:pfam12128 308 GeLSAADAAVAKdrselealedqhgafldaDIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYN------RRR 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 781 EKTVQDLKQEIKALKEEIGNVQLEKAQQLSITSQV-QELQNLLKgkeEQMNTMKAVLEEKEKDLANTGKWLQDL------ 853
Cdd:pfam12128 382 SKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDlQALESELR---EQLEAGKLEFNEEEYRLKSRLGELKLRlnqata 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 854 -------QEENESLKAHVQEVAQHNLKEVSSAsQFEEL----------------EIVLKEKENELKRVEAML-------- 902
Cdd:pfam12128 459 tpelllqLENFDERIERAREEQEAANAEVERL-QSELRqarkrrdqasealrqaSRRLEERQSALDELELQLfpqagtll 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 903 ----------KERESDLSSKTKLLQ----------DVQDENKLF--KSQIEQLkqqnyqQASSFPPHEELLK-------- 952
Cdd:pfam12128 538 hflrkeapdwEQSIGKVISPELLHRtdldpevwdgSVGGELNLYgvKLDLKRI------DVPEWAASEEELRerldkaee 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 953 -------VISEREKEISGLWNELDSLKDAVEHQRK--KNNDLREKNWeamealASTEKMLQDKVNKTSKERQQQVE---- 1019
Cdd:pfam12128 612 alqsareKQAAAEEQLVQANGELEKASREETFARTalKNARLDLRRL------FDEKQSEKDKKNKALAERKDSANerln 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1020 AVELEAKEVLKKLfpkvsvpsnlsySEWLHGFEKKAKEcmAGTSGSEEVKVLEHKLKeaDEMHTLLQLECEKYKSVLAET 1099
Cdd:pfam12128 686 SLEAQLKQLDKKH------------QAWLEEQKEQKRE--ARTEKQAYWQVVEGALD--AQLALLKAAIAARRSGAKAEL 749
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954983 1100 EGILQKLQRSVEqeenkwKVKVDEshKTIKQMQSSFTSSEQELERLRRENKDIENLRR-EREHLEMELEKAEMERSTYVT 1178
Cdd:pfam12128 750 KALETWYKRDLA------SLGVDP--DVIAKLKREIRTLERKIERIAVRRQEVLRYFDwYQETWLQRRPRLATQLSNIER 821
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966954983 1179 EVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTKLRTEQNERQKVAGDLHKAQQSLEL 1245
Cdd:pfam12128 822 AISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSI 888
|
|
| |
