|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
220-860 |
2.58e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 2.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 220 FEGLQQQFLG-ANENSAENMQIIQLQVLNKAKERQLENLVEKLNESECQIRYLNHQLVIIKDEKDGLTLSLresQKLFQN 298
Cdd:TIGR02168 346 LEELKEELESlEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR---ERLQQE 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 299 GKEREIQL-EAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESVVMGLTKKYEEQVL 377
Cdd:TIGR02168 423 IEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 378 SLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINRLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQ 457
Cdd:TIGR02168 503 GFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIK 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 458 AQKAHTMSENMNKALQEELTELKDEISLYESAAKL------GIHPSDSEG---ELNIELTESY--VDLGIKKVNWK---- 522
Cdd:TIGR02168 583 GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllgGVLVVDDLDnalELAKKLRPGYriVTLDGDLVRPGgvit 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 523 ---KSKVNSIVQQEDPNEELSKD-----EFILKLKAEVQRLLGSNS--------------MKRRLVSQLQNDLKDCHKKI 580
Cdd:TIGR02168 663 ggsAKTNSSILERRREIEELEEKieeleEKIAELEKALAELRKELEeleeeleqlrkeleELSRQISALRKDLARLEAEV 742
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 581 EDLHQvKRDEKSIEVETKTDTSEKPKNQLWLESSTSDIVRDDILLLKNEIQVLQQQNQELKETEEKLRNTNQDLcnqmrq 660
Cdd:TIGR02168 743 EQLEE-RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL------ 815
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 661 mvQDFDHDKREAVDRCERTyqqhHEAMKTQIRESLLAKHALEKQQLFEAYERTHLQ-----LRSELDKVNKEMTAVQECY 735
Cdd:TIGR02168 816 --NEEAANLRERLESLERR----IAATERRLEDLEEQIEELSEDIESLAAEIEELEelieeLESELEALLNERASLEEAL 889
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 736 LEVCREKDHLESTLRKtTEKEQQTQEKLLEEREEYVSKLQVELEK--------------KYQDTLMM---------EKSK 792
Cdd:TIGR02168 890 ALLRSELEELSEELRE-LESKRSELRRELEELREKLAQLELRLEGlevridnlqerlseEYSLTLEEaealenkieDDEE 968
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622953050 793 WLKDQETDIKQQVEN--EVILAKAHWDKEQKEIKEKLIQQLE--KEWQSKLDQTIKAMKKKTSDRGSQT-DQV 860
Cdd:TIGR02168 969 EARRRLKRLENKIKElgPVNLAAIEEYEELKERYDFLTAQKEdlTEAKETLEEAIEEIDREARERFKDTfDQV 1041
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
741-1107 |
2.60e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 2.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 741 EKDHLESTLRKTTEKEQQTQEKLLEEREEYVSKLQVELEKKYQDTLMMEKSKWLKDQETDIKQQVENEvilAKAHWDKEQ 820
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK---KKADEAKKA 1505
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 821 KEIKEKLIQQLEKEWQSKLDQTIKAMKKKTSDRGSQTDQVTTSDVISKKEMAIMIEEQKCIIQQHLEQEKDiaiKGAMKK 900
Cdd:PTZ00121 1506 AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK---NMALRK 1582
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 901 LEIelelkhceniAKQVEiavqnarQRWLGELPELAEYQALVRAEQKKWEEQHEVsvnkrisfavsEAKEKWKSELENMK 980
Cdd:PTZ00121 1583 AEE----------AKKAE-------EARIEEVMKLYEEEKKMKAEEAKKAEEAKI-----------KAEELKKAEEEKKK 1634
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 981 KNILPGTELEEKihslQRELELKNEEVPVVIRAELAKARSEWNKEKQEEIRRIQEQNEQDYRQFL--DDHRNKINEVLAA 1058
Cdd:PTZ00121 1635 VEQLKKKEAEEK----KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKK 1710
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1622953050 1059 AKEDfmKQKTELLLQKETELQTCLDQSRREwtMQEAKRIQLEIYQYEED 1107
Cdd:PTZ00121 1711 EAEE--KKKAEELKKAEEENKIKAEEAKKE--AEEDKKKAEEAKKDEEE 1755
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
253-845 |
1.28e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 1.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 253 QLENLVEKLNESECQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKER--EIQ-----LEAQIKALETQIQALKVNEE 325
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEieELQkelyaLANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 326 QMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESvVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHVK 405
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDEL--AEELAELEEKLEE-LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 406 QLERNQEAIKLEKTEI---INRLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAHTMSENMNKALQEELTELKDE 482
Cdd:TIGR02168 390 QLELQIASLNNEIERLearLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 483 ISLYESA---AKLGIHPSDSEGELNIELTESYVDL--GIKKVNWKKSKVNSIVQQ------------------------- 532
Cdd:TIGR02168 470 LEEAEQAldaAERELAQLQARLDSLERLQENLEGFseGVKALLKNQSGLSGILGVlselisvdegyeaaieaalggrlqa 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 533 -EDPNEELSKDEF------------ILKLKAEVQRLLGSNSMKRRL----VSQLQNDLKDCHKKI--------------E 581
Cdd:TIGR02168 550 vVVENLNAAKKAIaflkqnelgrvtFLPLDSIKGTEIQGNDREILKniegFLGVAKDLVKFDPKLrkalsyllggvlvvD 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 582 DLHQVKRDEKSIEVE----TKTDT-----------SEKPKNQLWLESSTSDIVR-------DDILLLKNEIQVLQQQNQE 639
Cdd:TIGR02168 630 DLDNALELAKKLRPGyrivTLDGDlvrpggvitggSAKTNSSILERRREIEELEekieeleEKIAELEKALAELRKELEE 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 640 LKETEEKLRNTNQDLCNQMRQMVQDFDHDKREAVDRCERTYQQHHE---------AMKTQIRESLLAKHALEK-----QQ 705
Cdd:TIGR02168 710 LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKElteleaeieELEERLEEAEEELAEAEAeieelEA 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 706 LFEAYERTHLQLRSELDKVNKEMTAVQECYLEVCREKDHLESTLRKtTEKEQQTQEKLLEEREEYVSKLQVELEKkyQDT 785
Cdd:TIGR02168 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA-TERRLEDLEEQIEELSEDIESLAAEIEE--LEE 866
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 786 LMMEKSKWLKdQETDIKQQVENEVILAKAHWDKEQKEIKEKLIQQLEKEWQSKLDQTIKA 845
Cdd:TIGR02168 867 LIEELESELE-ALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
305-1077 |
4.05e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.52 E-value: 4.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 305 QLEAQIKALETQIQALKVNEEQMikksRTTEMALESLKQQLVDLHHSESLQRAREQHESVVMGLTKKYEEQVLSL---QK 381
Cdd:TIGR00606 180 SATRYIKALETLRQVRQTQGQKV----QEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLknrLK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 382 NLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIInrltRSLEESQKQCAHLLQSgsvqEVAQLQFQLQQAQKA 461
Cdd:TIGR00606 256 EIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVF----QGTDEQLNDLYHNHQR----TVREKERELVDCQRE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 462 HTMSENMNKALQEELTELKDEISLYESAAKLgIHPSDSEGELNIELTESYVDLGikkvnwkkskvnsiVQQEDPNEELSK 541
Cdd:TIGR00606 328 LEKLNKERRLLNQEKTELLVEQGRLQLQADR-HQEHIRARDSLIQSLATRLELD--------------GFERGPFSERQI 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 542 DEFIlklKAEVQRLLGSNSMKRRLVSQLQNDLKDCHKKIEDLhQVKRDEKSIEVETKTDTSEKPKNQL--------WLES 613
Cdd:TIGR00606 393 KNFH---TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEI-RDEKKGLGRTIELKKEILEKKQEELkfvikelqQLEG 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 614 STSDIVRDDILLLKNEIQVLQQQNQELKETEEK----LRNTNQDLCNQMRQMVQDFDHDKREAVDRCERTYQQHHEAMKT 689
Cdd:TIGR00606 469 SSDRILELDQELRKAERELSKAEKNSLTETLKKevksLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKD 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 690 QIRESLLAKHALEKQQLFEAY------ERTHLQLRSELDKVNKEMTAVQECYLEVCREKDHLESTLRKTTEKEQQTQEKL 763
Cdd:TIGR00606 549 EQIRKIKSRHSDELTSLLGYFpnkkqlEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKL 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 764 L-----EEREEYVSKLQVELEKKYQDTLMMEKSKWLKDQ---ETDIKQQVENEVILAKAHWDKEQKEIKEKLiQQLEKEW 835
Cdd:TIGR00606 629 FdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQfitQLTDENQSCCPVCQRVFQTEAELQEFISDL-QSKLRLA 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 836 QSKLDQTIKAMKKKTSDRgsqtdqvttsdviskKEMAIMIEEQKCIIQQHLEQEKDIAIKGAMKKLEIELELKHCENIAK 915
Cdd:TIGR00606 708 PDKLKSTESELKKKEKRR---------------DEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 916 QVE--IAVQNARQRWLGELPELAEYQALVRAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMKKNILPGTEL---- 989
Cdd:TIGR00606 773 LLGtiMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNrkli 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 990 ---EEKIHSLQREL-ELKNEEVPVvirAELAKARSEWNKEKQEEIRRIQEQNEQdyrqfLDDHRNKINEvLAAAKEDFMK 1065
Cdd:TIGR00606 853 qdqQEQIQHLKSKTnELKSEKLQI---GTNLQRRQQFEEQLVELSTEVQSLIRE-----IKDAKEQDSP-LETFLEKDQQ 923
|
810
....*....|..
gi 1622953050 1066 QKTELLLQKETE 1077
Cdd:TIGR00606 924 EKEELISSKETS 935
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
669-1300 |
4.11e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 4.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 669 KREAVDRCERTYQQHHEAMKTQIRESLLAKHALEKQQLFEAYERTHLQLRSELDKVNKEMTAVQECYLE--VCREKDHLE 746
Cdd:PTZ00121 1195 KAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAhfARRQAAIKA 1274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 747 STLRKTTEKEQQTQEKLLEEREEYVSKLQV-ELEKKYQDTlmmEKSKWLKDQETDIKQqvenevilaKAHWDKEQKEIKE 825
Cdd:PTZ00121 1275 EEARKADELKKAEEKKKADEAKKAEEKKKAdEAKKKAEEA---KKADEAKKKAEEAKK---------KADAAKKKAEEAK 1342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 826 KLIQQLEKEWQSKLDQTIKAMKKKTSDRGSQTDQVTTSDVISKK-EMAIMIEEQKCIIQQHLEQEKDIAIKGAMKKLEIE 904
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKaEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE 1422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 905 LElKHCENIAKQVEIAVQNARQRWLGELPELAEYQALVRAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMKKnil 984
Cdd:PTZ00121 1423 AK-KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK--- 1498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 985 pGTELEEKIHSLQRELELKNEEVPVviRAELAKARSEwnKEKQEEIRRIQEQNEQDyrqflddHRNKINEVLAAAKEDFM 1064
Cdd:PTZ00121 1499 -ADEAKKAAEAKKKADEAKKAEEAK--KADEAKKAEE--AKKADEAKKAEEKKKAD-------ELKKAEELKKAEEKKKA 1566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1065 KQKtelllQKETELQTCLDQSRREWTMQEAKRIQLEIYQYEEDiLTVLGVLLRDTQKEHVSDFEDKQLLEIMSTCSSKWM 1144
Cdd:PTZ00121 1567 EEA-----KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE-KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1145 SVQYFEKLKGCIQKAFQDTLPLLVENA-DPQWEKRNMAELSKDSASRSTGQGVPGPAAGHHAQPLALQETEAEADKK--- 1220
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEENKIKAAEEAkKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaee 1720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1221 --KILEIKDLCCGHCFQELEKAKQECEDLKgKLEKCCRHLQHLERKHKAVVEKIGEENNKVIEELIEEnNDMKNKLEELR 1298
Cdd:PTZ00121 1721 lkKAEEENKIKAEEAKKEAEEDKKKAEEAK-KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE-EDEKRRMEVDK 1798
|
..
gi 1622953050 1299 TL 1300
Cdd:PTZ00121 1799 KI 1800
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
241-848 |
5.37e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 5.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 241 IQLQVLN-KAKERQLENLVEKLNESECQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQA 319
Cdd:COG1196 227 AELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 320 LKVNEEQMIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESvvmgLTKKYEEQVLSLQKNLDATVTALKEQEDICSR 399
Cdd:COG1196 307 LEERRRELEERLEELEEELAELEEELEEL--EEELEELEEELEE----AEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 400 LKDHVKQLERNQEAIKLEKTEIINRLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQKAhtmsenmnkALQEELTEL 479
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEE---------ALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 480 KDEISLYESAAKlgihpSDSEGELNIELTESYVDLGIKKVNWKKSKVNSIVQQEDPNEELSKDEFILKLKAEVQRLLGsn 559
Cdd:COG1196 452 AELEEEEEALLE-----LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAG-- 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 560 smkrrlvsqlqndlkdchkkieDLHQVKRDEKsiEVETKTDTsekpknqlWLESSTSDIVRDDILLLKNEIQVLQQQNQE 639
Cdd:COG1196 525 ----------------------AVAVLIGVEA--AYEAALEA--------ALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 640 lKETEEKLRNTNQdlcnqmRQMVQDFDHDKREAVDRCERTYQQHHEAMKTQIRESLLAKHALEKQQLfEAYERTHLQLRS 719
Cdd:COG1196 573 -RATFLPLDKIRA------RAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARL-EAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 720 ELDKVNKEMTAVQECYLEVCREKDHLESTLRKTTEKEQQTQEKLLEEREEYVSKLQVELEKKYQDTLMMEKSKWLKDQET 799
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE 724
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1622953050 800 DIKQQVENEVILAKAHWDKEQKEIKEKLIQQLE-----KEWQSKLDQTIKAMKK 848
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEEALEELPeppdlEELERELERLEREIEA 778
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
248-1054 |
1.46e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 1.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 248 KAKERQLENLVEKLNESECQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREI-QLEAQIKALETQIQALKVNEEQ 326
Cdd:TIGR02169 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgELEAEIASLERSIAEKERELED 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 327 MIKKSRTTEMALESLKQQLVDLhhSESLQRAREQHESVvmgltkkyEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQ 406
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEEL--EREIEEERKRRDKL--------TEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 407 LERNQEAIKLEKTEIINRLTRSLEESQKQCAHLLQsgsvqevaqlqfqlqqaqkahtmSENMNKALQEELTELKDEisLY 486
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELAD-----------------------LNAAIAGIEAKINELEEE--KE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 487 ESAAKLgihpsdSEGELNIELTESYVDLGIKKVNWKKSKVNSIvqqedpNEELSKDEF-ILKLKAEVQRLLGSNSMKRRL 565
Cdd:TIGR02169 445 DKALEI------KKQEWKLEQLAADLSKYEQELYDLKEEYDRV------EKELSKLQReLAEAEAQARASEERVRGGRAV 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 566 VSQLQNDLKDCHKKIEDLHQVkrdeksievetktdtseKPKNQLWLESSTSD----IVRDDILLLKNEIQVLQQQNQElk 641
Cdd:TIGR02169 513 EEVLKASIQGVHGTVAQLGSV-----------------GERYATAIEVAAGNrlnnVVVEDDAVAKEAIELLKRRKAG-- 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 642 eteeklRNTNQDLcNQMRQMVQDFDHDKRE-----AVD--RCERTYQ-------------QHHEAMKT---QIRESLLAK 698
Cdd:TIGR02169 574 ------RATFLPL-NKMRDERRDLSILSEDgvigfAVDlvEFDPKYEpafkyvfgdtlvvEDIEAARRlmgKYRMVTLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 699 HALEK-------------QQLFEAYERTHLQ-LRSELDKVNKEMTAVQECYLEVCREKDHLESTLRKTT----------- 753
Cdd:TIGR02169 647 ELFEKsgamtggsraprgGILFSRSEPAELQrLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASrkigeiekeie 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 754 --EKEQQTQEKLLEEREEYVSKLQVELEKKyqDTLMMEKSKWLKDQETDIkQQVENEVILAKAHWDKEQKEIKEKLIQQL 831
Cdd:TIGR02169 727 qlEQEEEKLKERLEELEEDLSSLEQEIENV--KSELKELEARIEELEEDL-HKLEEALNDLEARLSHSRIPEIQAELSKL 803
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 832 EKEwQSKLDQTIKAMKKKTSDRgSQTDQVTTSDVISKKEMAIMIEEQKCIIQQhlEQEKDIAIKGAMKKLEIELELKHCE 911
Cdd:TIGR02169 804 EEE-VSRIEARLREIEQKLNRL-TLEKEYLEKEIQELQEQRIDLKEQIKSIEK--EIENLNGKKEELEEELEELEAALRD 879
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 912 NIAKQVEIAVQNARQRwlgelpelAEYQALVRAEQK-KWEEQHEVSVNKRISFAVSEAKEKwKSELENMKKNILPGTELE 990
Cdd:TIGR02169 880 LESRLGDLKKERDELE--------AQLRELERKIEElEAQIEKKRKRLSELKAKLEALEEE-LSEIEDPKGEDEEIPEEE 950
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 991 EKIHSLQRELELKNEEV----PVVIRA------------ELAKARSEWNKEKQEEIRRIQEQNEQDYRQFLDDHrNKINE 1054
Cdd:TIGR02169 951 LSLEDVQAELQRVEEEIralePVNMLAiqeyeevlkrldELKEKRAKLEEERKAILERIEEYEKKKREVFMEAF-EAINE 1029
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
335-1079 |
3.33e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.51 E-value: 3.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 335 EMALESLKQQLVDLHhsESLQRAREQHE-------SVVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQL 407
Cdd:pfam15921 77 ERVLEEYSHQVKDLQ--RRLNESNELHEkqkfylrQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 408 ernqEAIKLEKTEIINRLTRSLEESQKqcAHLLQSGSVQE-----VAQLQFQLQQAQKAHTMS----ENMNKALQEELTE 478
Cdd:pfam15921 155 ----EAAKCLKEDMLEDSNTQIEQLRK--MMLSHEGVLQEirsilVDFEEASGKKIYEHDSMStmhfRSLGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 479 LKDEIS-----LYESAAKLGIHPSDSEGELNIEL-----------TESYVDLG--IKKVNWKKSKVNSIVQQEDPNEELS 540
Cdd:pfam15921 229 LDTEISylkgrIFPVEDQLEALKSESQNKIELLLqqhqdrieqliSEHEVEITglTEKASSARSQANSIQSQLEIIQEQA 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 541 KDEfilklkaevqrllgsNSMKRR-------LVSQLQNDLKDCHKKIEDlhQVKRDEKSIEVETKTDTSEKP-KNQLWLE 612
Cdd:pfam15921 309 RNQ---------------NSMYMRqlsdlesTVSQLRSELREAKRMYED--KIEELEKQLVLANSELTEARTeRDQFSQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 613 SSTSDivrDDillLKNEIQVLQQQNQELK-ETEEKLRNTNQDLCNQMrqmvqDFDHDKREAVDRcertyqqhheAMKTQI 691
Cdd:pfam15921 372 SGNLD---DQ---LQKLLADLHKREKELSlEKEQNKRLWDRDTGNSI-----TIDHLRRELDDR----------NMEVQR 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 692 RESLLAKHALEKQQLFEayerthlqlrseldkvnKEMTAVQ---ECYLEVCREKDHLEST---LRKTTEkEQQTQEKLLE 765
Cdd:pfam15921 431 LEALLKAMKSECQGQME-----------------RQMAAIQgknESLEKVSSLTAQLESTkemLRKVVE-ELTAKKMTLE 492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 766 EREEYVSKLQVELEKKYQDTLMMEKSKWLKDQETDIKQQVENEVILAKAHWDKEQKEIKEKLIQQLEKEWQSK-LDQTIK 844
Cdd:pfam15921 493 SSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEiLRQQIE 572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 845 AMKKKTSDRGSQTDQVttsdVISKKEMAIMIEEQKCIIQQH--LEQEKDIAIKGAMKKL-EIELELKHCENIAKQVEIAV 921
Cdd:pfam15921 573 NMTQLVGQHGRTAGAM----QVEKAQLEKEINDRRLELQEFkiLKDKKDAKIRELEARVsDLELEKVKLVNAGSERLRAV 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 922 QNARQrwlgELPELAEYQALVRAEQKKWEEQHEVsvnkrisfavseAKEKWKSELENMKKNIlpgTELEEKIHSLQRELE 1001
Cdd:pfam15921 649 KDIKQ----ERDQLLNEVKTSRNELNSLSEDYEV------------LKRNFRNKSEEMETTT---NKLKMQLKSAQSELE 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1002 -----LKNEE--------VPVVIRAELAKARSEWNKeKQEEIRRIQE--QNEQDYRQFLDDHRNKINEVLA--AAKEDFM 1064
Cdd:pfam15921 710 qtrntLKSMEgsdghamkVAMGMQKQITAKRGQIDA-LQSKIQFLEEamTNANKEKHFLKEEKNKLSQELStvATEKNKM 788
|
810
....*....|....*
gi 1622953050 1065 KQKTELLLQKETELQ 1079
Cdd:pfam15921 789 AGELEVLRSQERRLK 803
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
227-442 |
4.55e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 4.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 227 FLGANENSAENMQIIQLQVLNKAKERQLENLVEKLNESECQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQL 306
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 307 EAQIKALETQIQALKVNEEQMI----KKSRTTEMAL----ESLKQQLVDLHHSESLQRAREQHesvvmgltkkyEEQVLS 378
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLralyRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQ-----------AEELRA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622953050 379 LQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINRLTRSLEESQKQCAHLLQS 442
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
290-774 |
4.77e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 290 RESQKLF-QNGKEREIQLEaQIKALETQIQALKVNEE---QMIKKSRTTEMALESLKQQLVDL-HHSESLQRA------- 357
Cdd:COG4717 53 KEADELFkPQGRKPELNLK-ELKELEEELKEAEEKEEeyaELQEELEELEEELEELEAELEELrEELEKLEKLlqllply 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 358 --REQHESVVMGLTKKYEEqvlsLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINRLTRSLEESQKQ 435
Cdd:COG4717 132 qeLEALEAELAELPERLEE----LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 436 CAHLLQS-GSVQEVAQLQFQLQQAQKAHTMSENMNKALQEELTELKDEISLyesAAKLGIHPSDSEGELNIeLTESYVDL 514
Cdd:COG4717 208 LAELEEElEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAL---LALLGLGGSLLSLILTI-AGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 515 GIKKVNWKKSKVNSIVQQEDPNEELSKDEFILKLKAEVQRLLGSNSMKRRLVSQLQNDLKDchkKIEDLHQVKRDEKSIE 594
Cdd:COG4717 284 GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLD---RIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 595 VETKTDTSEKPKNQLWLESSTSDivRDDILLLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMVQDFDHDKREAVD 674
Cdd:COG4717 361 EELQLEELEQEIAALLAEAGVED--EEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELE 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 675 RCERTYQQHHEAMKTQIRESLLAKHALEKQQLFEAYERTHLQLRSELDKVNKEMTAVQecylevcrekdHLESTLRKTTE 754
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALK-----------LALELLEEARE 507
|
490 500
....*....|....*....|.
gi 1622953050 755 K-EQQTQEKLLEEREEYVSKL 774
Cdd:COG4717 508 EyREERLPPVLERASEYFSRL 528
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
371-1131 |
1.34e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 371 KYEEQVLSLQKNLDATVTALKeqedicsRLKDHVKQLERNQEAIKL--EKTEIINRLTRSLEESQKQCahllqsgSVQEV 448
Cdd:TIGR02168 169 KYKERRKETERKLERTRENLD-------RLEDILNELERQLKSLERqaEKAERYKELKAELRELELAL-------LVLRL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 449 AQLQFQLQQAQKAHTMSENMNKALQEELTELKDEIslyeSAAKLGIHPSDSE-GELNIELTESYVDLGIKKVNwKKSKVN 527
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKL----EELRLEVSELEEEiEELQKELYALANEISRLEQQ-KQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 528 SIVQQEDPNEELSkdEFILKLKAEVQRLLGSNSMKRRLVSQLQNDLKDCHKKIEDLHQVKRDEKSIEVEtktdtsekPKN 607
Cdd:TIGR02168 310 RLANLERQLEELE--AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE--------LEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 608 QLWLESSTSDIVRDDILLLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMVQDFDHDKREAVDRCERTYQQHHEAM 687
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 688 ktQIRESLLAKHALEKQQLFEAYERTHLQLRSELDKVNKEMTAVQECYLEVCREKDHlestlRKTTEKEQQTQEKLLEER 767
Cdd:TIGR02168 460 --EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-----QSGLSGILGVLSELISVD 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 768 EEYVSKLQVELEKKYQDTLMMEKSKWLKDQETDIKQQVENEVILAKAHWDKEQKEIKEKLIQQLEKEWQSKLDQTIK--- 844
Cdd:TIGR02168 533 EGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdp 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 845 -----------------------AMKKKTSDRGS----QTDQVTTSDVISK-----------KEMAIMIEEQKCIIQQHL 886
Cdd:TIGR02168 613 klrkalsyllggvlvvddldnalELAKKLRPGYRivtlDGDLVRPGGVITGgsaktnssileRRREIEELEEKIEELEEK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 887 EQEKDIAIKGAMKKL---------------EIELELKHCENIAKQVEIAVQNARQRWLGELPELAEYQALVRAEQKKWE- 950
Cdd:TIGR02168 693 IAELEKALAELRKELeeleeeleqlrkeleELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEe 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 951 --------EQHEVSVNKRISfAVSEAKEKWKSELENMKKNIlpgTELEEKIHSLQRELE-LKNEEVPVVIRAELAKARSE 1021
Cdd:TIGR02168 773 aeeelaeaEAEIEELEAQIE-QLKEELKALREALDELRAEL---TLLNEEAANLRERLEsLERRIAATERRLEDLEEQIE 848
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1022 WNKEKQEEIRRIQEQNEQDYRQFLDDH------RNKINEVLAAAKEDFMKQKTEL---------LLQKETELQTCLDQSR 1086
Cdd:TIGR02168 849 ELSEDIESLAAEIEELEELIEELESELeallneRASLEEALALLRSELEELSEELreleskrseLRRELEELREKLAQLE 928
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1622953050 1087 REWTMQEAKRIQLeiyqyeEDILTVLGVLLRDTQKEHVSDFEDKQ 1131
Cdd:TIGR02168 929 LRLEGLEVRIDNL------QERLSEEYSLTLEEAEALENKIEDDE 967
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
802-1107 |
6.05e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.81 E-value: 6.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 802 KQQVENEVILAKAHWDKEQKEIKEKLIQQ-LEKEWQSKLDQTIKAMKKKTSDRGSQTDQVTTSDVISKKEMAIMIEEQKC 880
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVSERQQQEkFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERM 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 881 IIQQHLEQEKdiaIKGAMKKLEIELelkhceniAKQVEIAVQNARQRWLGELP--------------ELAEYQALVRAEQ 946
Cdd:pfam17380 343 AMERERELER---IRQEERKRELER--------IRQEEIAMEISRMRELERLQmerqqknervrqelEAARKVKILEEER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 947 KKWEEQHEVSVNKrISFAVSEAKEKWKSELENMKKNILPGTELEEKIHSLQRELELKNEEVPVVIRAELAKARSEwNKEK 1026
Cdd:pfam17380 412 QRKIQQQKVEMEQ-IRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRD-RKRA 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1027 QEEIRRIQEQNEQDYRQFLDDHRNKiNEVLAAAKEDFMKQKTELLLQKETElqtclDQSRREWTMQEAKRIQLEIYQYEE 1106
Cdd:pfam17380 490 EEQRRKILEKELEERKQAMIEEERK-RKLLEKEMEERQKAIYEEERRREAE-----EERRKQQEMEERRRIQEQMRKATE 563
|
.
gi 1622953050 1107 D 1107
Cdd:pfam17380 564 E 564
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
641-949 |
1.11e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 641 KETEEKLRNTNQ------DLCNQMRQMVqdfDHDKREA------------VDRCE--------RTYQQHHEAMKTQIRES 694
Cdd:COG1196 175 EEAERKLEATEEnlerleDILGELERQL---EPLERQAekaeryrelkeeLKELEaellllklRELEAELEELEAELEEL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 695 LLAKHALEKQQlfEAYERTHLQLRSELDKVNKEMTAVQECYLEVCREKDHLESTLRKTTEKEQQTQEKLLEEREEyVSKL 774
Cdd:COG1196 252 EAELEELEAEL--AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE-LAEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 775 QVELEKKYQdtlmmEKSKWLKDQETDIKQQVENEVILAKAhwdKEQKEIKEKLIQQLEKEWQSKLDQTIKAMKKKTSDRg 854
Cdd:COG1196 329 EEELEELEE-----ELEELEEELEEAEEELEEAEAELAEA---EEALLEAEAELAEAEEELEELAEELLEALRAAAELA- 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 855 SQTDQVTTSDVISKKEMAIMIEEQKCIIQQHLEQEKDIAIKGAMKKLEIELELKHCENIAKQVEIAVQNARQRWLGELPE 934
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330
....*....|....*
gi 1622953050 935 LAEYQALVRAEQKKW 949
Cdd:COG1196 480 AELLEELAEAAARLL 494
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
310-847 |
2.42e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 310 IKALETQIQALKVN----EEQMIKKSRTTEMALESLKQQlvdlhHSESLQRAREQHESVVMGLTKK---YEEQVLSLQKN 382
Cdd:pfam15921 226 LRELDTEISYLKGRifpvEDQLEALKSESQNKIELLLQQ-----HQDRIEQLISEHEVEITGLTEKassARSQANSIQSQ 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 383 LDATVTALKEQEDICSRlkdHVKQLERNQEAIKLEKTEIINRLTRSLEESQKQCahLLQSGSVQEVAQLQFQLQQAqkah 462
Cdd:pfam15921 301 LEIIQEQARNQNSMYMR---QLSDLESTVSQLRSELREAKRMYEDKIEELEKQL--VLANSELTEARTERDQFSQE---- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 463 tmSENMNKALQEELTELKDEislyesaaklgihpsdsEGELNIELTESyvdlgikKVNWKKSKVNSIV------QQEDPN 536
Cdd:pfam15921 372 --SGNLDDQLQKLLADLHKR-----------------EKELSLEKEQN-------KRLWDRDTGNSITidhlrrELDDRN 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 537 EELSKDEFILK-LKAEVQ--------RLLGSNSMKRR---LVSQLQNDLKDCHKKIEDLHQVKRDEKSIEVETKTDTSEK 604
Cdd:pfam15921 426 MEVQRLEALLKaMKSECQgqmerqmaAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 605 PKNQLWLESSTSDIVRddillLKNEIQVLQQQNQELKETEEKLRNTnQDLCNQMR-QMVQDfdhdkreavDRCERTYQQH 683
Cdd:pfam15921 506 QEKERAIEATNAEITK-----LRSRVDLKLQELQHLKNEGDHLRNV-QTECEALKlQMAEK---------DKVIEILRQQ 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 684 HEAMktqiresllakhalekQQLFEAYERTHLQLRSELDKVNKEMTAVQECYLEVCREKDHLESTLRKTTEKEQQTQEKL 763
Cdd:pfam15921 571 IENM----------------TQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEK 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 764 LEEREEYVSKLQ-VELEKKYQDTLMMEkskwLKDQETDIKQQVENEVILAKAHWDK--EQKEIKEKLIQQLeKEWQSKLD 840
Cdd:pfam15921 635 VKLVNAGSERLRaVKDIKQERDQLLNE----VKTSRNELNSLSEDYEVLKRNFRNKseEMETTTNKLKMQL-KSAQSELE 709
|
....*..
gi 1622953050 841 QTIKAMK 847
Cdd:pfam15921 710 QTRNTLK 716
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
236-1096 |
2.55e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 236 ENMQIIQLQVLNKAKERQLE-NLVEKLNESECQIR--------YLNHQLVIIKDEKDGLTlSLRESQKLFQNGKEREIQL 306
Cdd:TIGR00606 189 ETLRQVRQTQGQKVQEHQMElKYLKQYKEKACEIRdqitskeaQLESSREIVKSYENELD-PLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 307 EAQIKALE-TQIQALKVNEEQMIKKSRTTEMALESLKqQLVDLHHSESLQRARE-----------QHESVVMGLTK---K 371
Cdd:TIGR00606 268 DNEIKALKsRKKQMEKDNSELELKMEKVFQGTDEQLN-DLYHNHQRTVREKERElvdcqreleklNKERRLLNQEKtelL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 372 YEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQLERN---QEAIKLEKTEIINRLTRSLEESQKQCAHLLQSGSVQEV 448
Cdd:TIGR00606 347 VEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGpfsERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 449 AQLQFQLQQAQKAHTMsENMNKALQEELTELKDEISLYESAAKlgihPSDSEGELNIELTESYVDLGIKkvnwKKSKVNS 528
Cdd:TIGR00606 427 QADEIRDEKKGLGRTI-ELKKEILEKKQEELKFVIKELQQLEG----SSDRILELDQELRKAERELSKA----EKNSLTE 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 529 IVQQEDPNEELSKDEFILKLKAEVQRLLGSNSMKRRLvSQLQNDLKDCHKKIEDLHQVKRDEKSIEVETKTDTSEKPKNQ 608
Cdd:TIGR00606 498 TLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTR-TQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLE 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 609 LWLESSTSDI--VRDDILLLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMV--QDFDHDKREAVDRCERTYQQHH 684
Cdd:TIGR00606 577 DWLHSKSKEInqTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCgsQDEESDLERLKEEIEKSSKQRA 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 685 E-AMKTQIRESLLAKHALEKQQLFEAYERThLQLRSELDKVNKEMTAVQECYLEVCREKDHLESTLRKTTE--------- 754
Cdd:TIGR00606 657 MlAGATAVYSQFITQLTDENQSCCPVCQRV-FQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDemlglapgr 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 755 -KEQQTQEKLLEEREEYVSKLQVELEKKYQDTLMMEKSKWLKDQETDIKQQVENEVILAKaHWDKEQKEIKEKLIQQLEK 833
Cdd:TIGR00606 736 qSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIME-RFQMELKDVERKIAQQAAK 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 834 EWQSKLDQTIKAMKKKTSDRGSQTDQVTTSDVISKKemaiMIEEQKCIIqQHLEQEKDiaiKGAMKKLEIELELKHCENI 913
Cdd:TIGR00606 815 LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRK----LIQDQQEQI-QHLKSKTN---ELKSEKLQIGTNLQRRQQF 886
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 914 AKQVEIAVQNArQRWLGELPELAEYQALVRAEQKKWEEQHEVSVNKRisfavSEAKEKWKSELENMKKNIlpgteleEKI 993
Cdd:TIGR00606 887 EEQLVELSTEV-QSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK-----ETSNKKAQDKVNDIKEKV-------KNI 953
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 994 HSLQRELELKNEEvpvviraelakARSEWNKEKQEEIRRIQEQNEQDyrqflDDHRNKINEVLAAAKEDFMKQKtelllQ 1073
Cdd:TIGR00606 954 HGYMKDIENKIQD-----------GKDDYLKQKETELNTVNAQLEEC-----EKHQEKINEDMRLMRQDIDTQK-----I 1012
|
890 900
....*....|....*....|...
gi 1622953050 1074 KETELQTCLDQSRREWTMQEAKR 1096
Cdd:TIGR00606 1013 QERWLQDNLTLRKRENELKEVEE 1035
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
470-774 |
3.33e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 470 KALQEELTELKDEIS-LYESAAKLgihpsdsEGELNIELTESYVDLGIKKVNWKKSKVNSIVQQedpneelskdefILKL 548
Cdd:COG4913 613 AALEAELAELEEELAeAEERLEAL-------EAELDALQERREALQRLAEYSWDEIDVASAERE------------IAEL 673
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 549 KAEVQRLLGSNSMKRRL---VSQLQNDLKDCHKKIEDL--------HQVKRDEKSIEvETKTDTSEKPKNQLWLESSTSD 617
Cdd:COG4913 674 EAELERLDASSDDLAALeeqLEELEAELEELEEELDELkgeigrleKELEQAEEELD-ELQDRLEAAEDLARLELRALLE 752
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 618 IVRDDILLLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMVQDFDHDKREAVDRCE--RTYQQHHEamktQIRESL 695
Cdd:COG4913 753 ERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLEslPEYLALLD----RLEEDG 828
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 696 LAKHaleKQQLFEA------YERTHL--QLRSE-------LDKVNKEMTAV---QECYLEVCREKDHLEST------LRK 751
Cdd:COG4913 829 LPEY---EERFKELlnensiEFVADLlsKLRRAireikerIDPLNDSLKRIpfgPGRYLRLEARPRPDPEVrefrqeLRA 905
|
330 340
....*....|....*....|...
gi 1622953050 752 TTEKEQQTQEKLLEEREEYVSKL 774
Cdd:COG4913 906 VTSGASLFDEELSEARFAALKRL 928
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
639-1300 |
3.64e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 3.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 639 ELKETEEKLRNtNQDLCNQMRQMVQDFDHDKREAVDRCERTYQQHheamKTQIRESLLAKH-----------ALEKQQLF 707
Cdd:pfam05483 100 ELKQKENKLQE-NRKIIEAQRKAIQELQFENEKVSLKLEEEIQEN----KDLIKENNATRHlcnllketcarSAEKTKKY 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 708 EAYERTHLQLRSELDK-VNKEMTAVQECYLEVCREKDHLESTLRKTTEKEQQTQE---KLLEEREEYVSKLQV---ELEK 780
Cdd:pfam05483 175 EYEREETRQVYMDLNNnIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEeykKEINDKEKQVSLLLIqitEKEN 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 781 KYQD-TLMMEKSKWLKDQ-ETDIKQQVEN--EVILAKAHWDKEQKEIKEKLIQQL--EKEWQSKLDQTIKAMKKKTSDRG 854
Cdd:pfam05483 255 KMKDlTFLLEESRDKANQlEEKTKLQDENlkELIEKKDHLTKELEDIKMSLQRSMstQKALEEDLQIATKTICQLTEEKE 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 855 SQTDQ-----VTTSDVISKKEMAI-MIEEQKCIIQQHLEQEKDiaikgAMKKLEIELELKHCEniaKQVEIAVQNARQRW 928
Cdd:pfam05483 335 AQMEElnkakAAHSFVVTEFEATTcSLEELLRTEQQRLEKNED-----QLKIITMELQKKSSE---LEEMTKFKNNKEVE 406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 929 LGELPE-LAEYQALVRAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELENMKKNILPGTELEEK-IHSLQRELE---LK 1003
Cdd:pfam05483 407 LEELKKiLAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKeVEDLKTELEkekLK 486
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1004 NEEVPvviraelakarSEWNKEKQEEIRRIQEQNeqDYRQFLDDHRNKINEvlAAAKEDFMKQKTELLLQKETELQTCLD 1083
Cdd:pfam05483 487 NIELT-----------AHCDKLLLENKELTQEAS--DMTLELKKHQEDIIN--CKKQEERMLKQIENLEEKEMNLRDELE 551
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1084 QSRREWtMQEAKRIQLEIYQYEEDILTVLGVLLRDTQKEHVSDFEDKQLLEIMSTCSskwmsvQYFEKLKGcIQKAFQDT 1163
Cdd:pfam05483 552 SVREEF-IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKN------KNIEELHQ-ENKALKKK 623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1164 LPLLVENADPQWEKRNMAELSKDSASRSTGqgvpgpaaghhaqplalqetEAEADKKKILEIKDLCCGHCFQELEKAK-- 1241
Cdd:pfam05483 624 GSAENKQLNAYEIKVNKLELELASAKQKFE--------------------EIIDNYQKEIEDKKISEEKLLEEVEKAKai 683
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1242 -QECEDLKGKLEKCCrhlQHLERKHKAVVEKIGEENNKVIEELIEENNDMKNKLEELRTL 1300
Cdd:pfam05483 684 aDEAVKLQKEIDKRC---QHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSA 740
|
|
| PRK13460 |
PRK13460 |
F0F1 ATP synthase subunit B; Provisional |
1025-1132 |
3.79e-04 |
|
F0F1 ATP synthase subunit B; Provisional
Pssm-ID: 139585 [Multi-domain] Cd Length: 173 Bit Score: 43.09 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1025 EKQEEIRRIQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQKTELLLQKETELQTCLDQSRREWTMQEAKRI-QLEIYQ 1103
Cdd:PRK13460 57 NKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALsQLQNQI 136
|
90 100
....*....|....*....|....*....
gi 1622953050 1104 YEEDILTVLGVLLRDTQKEHVSDFEDKQL 1132
Cdd:PRK13460 137 VEMTITIASKVLEKQLKKEDYKAFIETEL 165
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
625-1134 |
4.24e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 4.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 625 LLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMVQDFDHDKREAVDRCERTYQQHHEamktqiRESLLAKHALEKQ 704
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE------LAELEEELEELEE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 705 QLfeayerthLQLRSELDKVNKEMTAVQEcylevcrEKDHLESTLRKTTEKEQQTQEKLLEEREEYVSKLQVELE-KKYQ 783
Cdd:COG1196 338 EL--------EELEEELEEAEEELEEAEA-------ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAElAAQL 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 784 DTLMMEKSKWLKDQETDIKQQVENEVILAKAhwdkEQKEIKEKLIQQLEKEWQSKLDQTIKAMKKKTSDRGSQTDQVTTS 863
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAEL----EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 864 DVISKKEMAIMIEEQKCIIQQHLEQEKDIAIKGAMKKLEIELELKHCENIAKQVEIAVQNARQRWLGELpeLAEYQALVR 943
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAA--LQNIVVEDD 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 944 AEQKKWEEQHEVSVNKRISF------AVSEAKEKWKSELENMKKNILPGTELEEKIHSLQRELELKNEEVPVVIRAELAK 1017
Cdd:COG1196 557 EVAAAAIEYLKAAKAGRATFlpldkiRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1018 ARSEwnKEKQEEIRRIQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQKTELLLQKETELQTCLDQSRREWTMQEAKRI 1097
Cdd:COG1196 637 RRAV--TLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510
....*....|....*....|....*....|....*..
gi 1622953050 1098 QLEIYQYEEDILTVLGVLLRDTQKEHVSDFEDKQLLE 1134
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
239-907 |
4.71e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 4.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 239 QIIQLQVLNKAKERQLENLVEKLNESECQIRYLNHQL---------VIIKDEKdgLTLSLRESQKLFQNgkereiqleAQ 309
Cdd:TIGR00606 427 QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELqqlegssdrILELDQE--LRKAERELSKAEKN---------SL 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 310 IKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQHESVVMGLTKKYEEQVLSL------QKNL 383
Cdd:TIGR00606 496 TETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLlgyfpnKKQL 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 384 DATVTALKEQEDIcsrLKDHVKQLERNQEAIKLEKTEIINRLTRSLEESQKQCAHLLQSGSVQEvaqlqfqlqQAQKAHT 463
Cdd:TIGR00606 576 EDWLHSKSKEINQ---TRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQD---------EESDLER 643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 464 MSENMNKAlQEELTELKDEISLYESAAKLGIHPSDSEGELNIELTESYvdlgiKKVNWKKSKVNSIVQQEdPNEELSKDE 543
Cdd:TIGR00606 644 LKEEIEKS-SKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTE-----AELQEFISDLQSKLRLA-PDKLKSTES 716
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 544 FILKLKAEVQRLLGSNSMKRRLVSQLQNDLKDCHKKIEDLHQVKRDEKSievetKTDTSEKPKNQLWLESSTSDIVRDDI 623
Cdd:TIGR00606 717 ELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN-----DIEEQETLLGTIMPEEESAKVCLTDV 791
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 624 LLLKNEIQVLQQQNQELKETEEKLRNTNQDLC-NQMRQMVQDFDHDKREAVDRCERTYQQHHEAMK-TQIRESLLAKHAL 701
Cdd:TIGR00606 792 TIMERFQMELKDVERKIAQQAAKLQGSDLDRTvQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEqIQHLKSKTNELKS 871
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 702 EKQQLFEAYERTHlQLRSELDKVNKEmtaVQECYLEVcrekdhleSTLRKTTEKEQQTQEKLLEEREEYVSKLQVElEKK 781
Cdd:TIGR00606 872 EKLQIGTNLQRRQ-QFEEQLVELSTE---VQSLIREI--------KDAKEQDSPLETFLEKDQQEKEELISSKETS-NKK 938
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 782 YQDTLMMEKSKWlkDQETDIKQQVENEVILAKAHWDKEQKEIKEKLIQQLEkEWQSKLDQTIKAMKKKTSDRGSQTDQVT 861
Cdd:TIGR00606 939 AQDKVNDIKEKV--KNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLE-ECEKHQEKINEDMRLMRQDIDTQKIQER 1015
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 1622953050 862 -TSDVISKKEMAIMIEEQKCIIQQHLEQEKDIAI---KGAMKKLEIELEL 907
Cdd:TIGR00606 1016 wLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVlqmKQEHQKLEENIDL 1065
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
300-951 |
4.82e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 4.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 300 KEREIQLEAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVdlhhsESLQRAREQHESVVMGLTKkyEEQVLSL 379
Cdd:TIGR00618 186 FAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLR-----EALQQTQQSHAYLTQKREA--QEEQLKK 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 380 QKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKL----------------EKTEIINRLTRSLEESQKQCAHLLQSG 443
Cdd:TIGR00618 259 QQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLaahikavtqieqqaqrIHTELQSKMRSRAKLLMKRAAHVKQQS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 444 SVQEVAQLQFQ------------------LQQAQKAHTMSENMnKALQEELTELKDEISLyeSAAKLGIhpSDSEGELNI 505
Cdd:TIGR00618 339 SIEEQRRLLQTlhsqeihirdahevatsiREISCQQHTLTQHI-HTLQQQKTTLTQKLQS--LCKELDI--LQREQATID 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 506 ELTESYVDLGIKKVNWKKSKVNSIVQQEDPNEELSKDEFILKLKaevQRLLGSNSMKRRLVSQLQNDLKDCHKKIEDLHQ 585
Cdd:TIGR00618 414 TRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLE---KIHLQESAQSLKEREQQLQTKEQIHLQETRKKA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 586 V--KRDEKSIEVETKTDTSEKPKNQLWLESSTSDIVRDDILLLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMVQ 663
Cdd:TIGR00618 491 VvlARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 664 DFdhdkrEAVDRCERTYQQHHEAMK--TQIRESLLAKHALEKQQLFEAYERTHLQLRSELDKVNKEMTAvQECYLEVCRE 741
Cdd:TIGR00618 571 SF-----SILTQCDNRSKEDIPNLQniTVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHL-QQCSQELALK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 742 KDHLEstlrkttekeqQTQEKLLEEREEYVSKLQVELEKKY--QDTLMMEKSKWLKDQETDIKQQVENEVILAKAHWDKE 819
Cdd:TIGR00618 645 LTALH-----------ALQLTLTQERVREHALSIRVLPKELlaSRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHI 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 820 QKEIKE-KLIQQLEKEWQSKLDQTIKAMKKKTSDRGSQTDQVTTSDVI--SKKEMAIMIEEQKCIIQQHLEQEKDIAIKG 896
Cdd:TIGR00618 714 EEYDREfNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEahFNNNEEVTAALQTGAELSHLAAEIQFFNRL 793
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622953050 897 --------AMKKLEIELELKHCENIAKQVEIAVQNARQRWLGELPELAEYQALVRAEQKKWEE 951
Cdd:TIGR00618 794 reedthllKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEE 856
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
670-1036 |
5.27e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 5.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 670 REAVDRCERTYQQHHEAMKTQIRESLLAKHALEKQQLFEAYERTHL------------QLRSELDKVNKEMTAVQECYLE 737
Cdd:pfam12128 603 RERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALknarldlrrlfdEKQSEKDKKNKALAERKDSANE 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 738 VCREKDH-LESTLRKTTEKEQQTQEKLLEEREEYVSKLQVELEKKyqdtlmmekskwlKDQETDIKQQVENEVILAKAHW 816
Cdd:pfam12128 683 RLNSLEAqLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGAL-------------DAQLALLKAAIAARRSGAKAEL 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 817 DKEQKEIKEKLIQQ-LEKEWQSKLDQTIKAMKKKTSDRGSQTDQVTTSDV-------ISKKEMAIMIEEqkcIIQQHLEQ 888
Cdd:pfam12128 750 KALETWYKRDLASLgVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDwyqetwlQRRPRLATQLSN---IERAISEL 826
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 889 EKDIAIKGAMKKLEI-ELELKHCENIAKQVEIAVQnarqrwLGELPELAEYQALVRAEQKKWEEQHEVSVNKRisfAVSE 967
Cdd:pfam12128 827 QQQLARLIADTKLRRaKLEMERKASEKQQVRLSEN------LRGLRCEMSKLATLKEDANSEQAQGSIGERLA---QLED 897
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622953050 968 AKEKWKSELENMKKNI---------LPGTELEEKIHSLQREL-ELKNEEVPVVIRAELAKARSEWNKEKQEEIRRIQEQ 1036
Cdd:pfam12128 898 LKLKRDYLSESVKKYVehfknviadHSGSGLAETWESLREEDhYQNDKGIRLLDYRKLVPYLEQWFDVRVPQSIMVLRE 976
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
225-750 |
9.01e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 9.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 225 QQFLGANENSAENMQIIQLQVLNKAKERqlENLVEKLNESECqirylNHQLVIIKDEKDGLTLslresQKLFQNGKEREI 304
Cdd:pfam05483 306 QRSMSTQKALEEDLQIATKTICQLTEEK--EAQMEELNKAKA-----AHSFVVTEFEATTCSL-----EELLRTEQQRLE 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 305 QLEAQIKALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDlhhSESLQRAREQHESVVMGLTKKYEEQVLSLQK--- 381
Cdd:pfam05483 374 KNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAE---DEKLLDEKKQFEKIAEELKGKEQELIFLLQArek 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 382 ---NLDATVTALKEQEDICSRlkdHVKQLERNQEAIKLEKTEIINRLTRSLEESQKqcahLLQSGS--VQEVAQLQFQLQ 456
Cdd:pfam05483 451 eihDLEIQLTAIKTSEEHYLK---EVEDLKTELEKEKLKNIELTAHCDKLLLENKE----LTQEASdmTLELKKHQEDII 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 457 QAQKAHTMSENMNKALQEELTELKDEIslyesaaklgihpsdsegelnieltESYVDLGIKKVNWKKSKVnsivqqeDPN 536
Cdd:pfam05483 524 NCKKQEERMLKQIENLEEKEMNLRDEL-------------------------ESVREEFIQKGDEVKCKL-------DKS 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 537 EELSKDEFILKLKAEVQRLLGSNSmkrrlVSQLQNDLKDCHKKIEDLHQVKR--DEKSIEVETKTDTSEKPKNQLWLE-S 613
Cdd:pfam05483 572 EENARSIEYEVLKKEKQMKILENK-----CNNLKKQIENKNKNIEELHQENKalKKKGSAENKQLNAYEIKVNKLELElA 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 614 STSDIVRDDILLLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMVQDFDHDKREAVDRCERTYQQHHEAMKTQIRE 693
Cdd:pfam05483 647 SAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEERDSE 726
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622953050 694 SLLAKHALEKQQLFEAYERTHL-QLRSELDKVNKEMTAVQECYLEVCREKDHLESTLR 750
Cdd:pfam05483 727 LGLYKNKEQEQSSAKAALEIELsNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILK 784
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
301-784 |
1.05e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 301 EREIQLEAQIKALETQIQALKVNEEQmiKKSRTTEMALESLKQQLVDLHHS-ESLQRAREQHESVVMGLTKKYEE----Q 375
Cdd:COG4913 262 ERYAAARERLAELEYLRAALRLWFAQ--RRLELLEAELEELRAELARLEAElERLEARLDALREELDELEAQIRGnggdR 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 376 VLSLQKNLDATVTALKEQEDICSRLKDHVKQLErnqeaIKLEKTEiinrltRSLEESQKQCAHLLQSGSVQEvaqlqfql 455
Cdd:COG4913 340 LEQLEREIERLERELEERERRRARLEALLAALG-----LPLPASA------EEFAALRAEAAALLEALEEEL-------- 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 456 QQAQKAHTMSENMNKALQEELTELKDEISLYES----------------AAKLGIHPSDSE--GELnIELTESYVDlgik 517
Cdd:COG4913 401 EALEEALAEAEAALRDLRRELRELEAEIASLERrksniparllalrdalAEALGLDEAELPfvGEL-IEVRPEEER---- 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 518 kvnWKK--------------------SKVNSIVQQEDPNEELSKDEFILKLKAEVQRLLGSNSMKRRLVSQ-------LQ 570
Cdd:COG4913 476 ---WRGaiervlggfaltllvppehyAAALRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKphpfrawLE 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 571 NDLKD--CHKKIEDLHQVKRDEKSIEVE--TKTDTS--EKPKNQlwlesstsDIVRDDILLLKNE--IQVLQQQNQELKE 642
Cdd:COG4913 553 AELGRrfDYVCVDSPEELRRHPRAITRAgqVKGNGTrhEKDDRR--------RIRSRYVLGFDNRakLAALEAELAELEE 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 643 TEEKLRNTNQDLCNQMRQMVQdfdhdKREAVDRCE---------RTYQQHHEAMKTQIRESLLAKHALE--KQQLfEAYE 711
Cdd:COG4913 625 ELAEAEERLEALEAELDALQE-----RREALQRLAeyswdeidvASAEREIAELEAELERLDASSDDLAalEEQL-EELE 698
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622953050 712 RTHLQLRSELDKVNKEMTAVQECYLEVCREKDHLESTLRKTTEKEQQTQEKLLEER------EEYVSKLQVELEKKYQD 784
Cdd:COG4913 699 AELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfaaalgDAVERELRENLEERIDA 777
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
244-441 |
1.14e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 244 QVLNK-AKERQLENLVEKLNESECQIRYLNHQLVIIKDEKDGLTLSLRE--SQKLFQNGKEREIQLEAQIKALETQIQAL 320
Cdd:COG3206 152 AVANAlAEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 321 KVNEEQMIKKSRTTEMALESLKQQLVDLHHSESLQRAREQH---ESVVMGLTKKYEE---QVLSLQKNLDATVTALK-EQ 393
Cdd:COG3206 232 RAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLaelEAELAELSARYTPnhpDVIALRAQIAALRAQLQqEA 311
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622953050 394 EDICSRLKDHVKQLERNQEAIKLEKTEI-------------INRLTRSLEESQKQCAHLLQ 441
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLearlaelpeleaeLRRLEREVEVARELYESLLQ 372
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
249-414 |
1.24e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 249 AKERQLENLVEKLNESECQIRYLNHQLVIIKDEKDGLTLSLRE-SQKLFQNGKEREIQLEAQIKALETQIQALKVNEEQM 327
Cdd:COG4913 285 FAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARL 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 328 IKKSRTTEMALESLKQQLVDLHhsESLQRAREQHESVVMGLTKKYEEqvlslqknLDATVTALKEQEDicsRLKDHVKQL 407
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALR--AEAAALLEALEEELEALEEALAE--------AEAALRDLRRELR---ELEAEIASL 431
|
....*..
gi 1622953050 408 ERNQEAI 414
Cdd:COG4913 432 ERRKSNI 438
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1210-1396 |
1.63e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.23 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1210 LQETEAEAD---KKKILEIKDlccghcfqELEKAKQECE-DLKGKLEKccrhLQHLERK---HKAVVEKIGEENNKVIEE 1282
Cdd:PRK12704 44 LEEAKKEAEaikKEALLEAKE--------EIHKLRNEFEkELRERRNE----LQKLEKRllqKEENLDRKLELLEKREEE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 1283 LIEENNDMKNKLEELrtlcktpprslsagaientclpcsggalEELRGQYIKAVKKIKRDMLRYIQESKERAAEMVKAEV 1362
Cdd:PRK12704 112 LEKKEKELEQKQQEL----------------------------EKKEEELEELIEEQLQELERISGLTAEEAKEILLEKV 163
|
170 180 190
....*....|....*....|....*....|....*
gi 1622953050 1363 LRE-RQETARKMRKYYliclqqilqDDGKEGAEKK 1396
Cdd:PRK12704 164 EEEaRHEAAVLIKEIE---------EEAKEEADKK 189
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
716-1001 |
1.69e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 716 QLRSELDKVNKEMTAVQEcYLEVCREKDHLESTLR----KTTEKEQQTQEKLLEEREEYVSKLQVELEKKYQDtlMMEKS 791
Cdd:TIGR02169 195 EKRQQLERLRREREKAER-YQALLKEKREYEGYELlkekEALERQKEAIERQLASLEEELEKLTEEISELEKR--LEEIE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 792 KWLKDQETDIKQQVENEVILAKAHWDKEQKEI---------KEKLIQQLEKEWQ------SKLDQTIKAMKKKTSDRGSQ 856
Cdd:TIGR02169 272 QLLEELNKKIKDLGEEEQLRVKEKIGELEAEIaslersiaeKERELEDAEERLAkleaeiDKLLAEIEELEREIEEERKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 857 TDQVTTSDVISKKEMAIMIEEqkciIQQhlEQEKDIAIKGAMKKLEIELE-LKHCENIAKQVEIAVQNARQRWLGELPEL 935
Cdd:TIGR02169 352 RDKLTEEYAELKEELEDLRAE----LEE--VDKEFAETRDELKDYREKLEkLKREINELKRELDRLQEELQRLSEELADL 425
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622953050 936 AEYQALVRAEQKKWEEQHEvSVNKRISFA------VSEAKEKWKSELENMKKNIlpgTELEEKIHSLQRELE 1001
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKE-DKALEIKKQewkleqLAADLSKYEQELYDLKEEY---DRVEKELSKLQRELA 493
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
700-849 |
1.78e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.84 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 700 ALEKQQLFEAYERTHlQLRSELDKVNKEMT---AVQECYLEvcREKDHLESTLRKTTEKEQ--QTQEKLLEEREEYVSKL 774
Cdd:PRK12704 53 AIKKEALLEAKEEIH-KLRNEFEKELRERRnelQKLEKRLL--QKEENLDRKLELLEKREEelEKKEKELEQKQQELEKK 129
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622953050 775 QVELEKKYQdtlmmekskwlkdqetdiKQQVENEVIlakAHWDKEqkEIKEKLIQQLEKEWQSKLDQTIKAMKKK 849
Cdd:PRK12704 130 EEELEELIE------------------EQLQELERI---SGLTAE--EAKEILLEKVEEEARHEAAVLIKEIEEE 181
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
816-1088 |
1.83e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 816 WD-KEQKEIKEKLIQQLEKEWQsKLDQTIKAMKKKTSDrgsqtdqvttsdviskkemaimIEEQKCIIQQHLE-QEKDIA 893
Cdd:COG4913 606 FDnRAKLAALEAELAELEEELA-EAEERLEALEAELDA----------------------LQERREALQRLAEySWDEID 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 894 IKGAMKKL-EIELELKHCEN-------IAKQVEiAVQNARQRWLGELPELAEYQALVRAEQKKWEEQHEvSVNKRISFAV 965
Cdd:COG4913 663 VASAEREIaELEAELERLDAssddlaaLEEQLE-ELEAELEELEEELDELKGEIGRLEKELEQAEEELD-ELQDRLEAAE 740
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 966 SEAKEKWKSELENMKKNILPGTELEEKIHSLQRELELKNEEVpVVIRAELAKARSEWNKEKQEEIRRIQEQNEqDYRQFL 1045
Cdd:COG4913 741 DLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL-NRAEEELERAMRAFNREWPAETADLDADLE-SLPEYL 818
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1622953050 1046 DDHRNKINEVLAAAKEDFMKQKTELLLQKETELQTCLDQSRRE 1088
Cdd:COG4913 819 ALLDRLEEDGLPEYEERFKELLNENSIEFVADLLSKLRRAIRE 861
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
239-852 |
1.95e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 239 QIIQLQVLNKAKERQLENLVEKLNESECQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQIQ 318
Cdd:TIGR04523 219 QISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 319 ALKVNEEQmikksrttemaleslkqqlvdlhhseslqrareqhesvvmGLTKKYEEQVLSLQKNLDATVTALKEQEDICS 398
Cdd:TIGR04523 299 DLNNQKEQ----------------------------------------DWNKELKSELKNQEKKLEEIQNQISQNNKIIS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 399 RLKDHVKQLERNQEAIKLEKTEIinrlTRSLEESQKQCAHLlqsgsvqevaqlqfqlqqaqkahtmsENMNKALQEELTE 478
Cdd:TIGR04523 339 QLNEQISQLKKELTNSESENSEK----QRELEEKQNEIEKL--------------------------KKENQSYKQEIKN 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 479 LKDEISlyesaaklgihpsdsegELNIELTEsyvdlgIKKVNwkKSKVNSIVQQEDPNEELSKD-----EFILKLKAEVQ 553
Cdd:TIGR04523 389 LESQIN-----------------DLESKIQN------QEKLN--QQKDEQIKKLQQEKELLEKEierlkETIIKNNSEIK 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 554 RLLGSNSMKRRLVSQLQNDLKDCHKKIEDLhqvkrdekSIEVETKTDTSEKPKNQLWLESSTSDIVRDDILLLKNEIQVL 633
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVL--------SRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 634 QQQNQELKETEEKLRNTNQDLCNQMRQMVQDFDHD----KREAVDRCERTYQQHHEAMKtQIRESLLAKHAlEKQQLFEA 709
Cdd:TIGR04523 516 TKKISSLKEKIEKLESEKKEKESKISDLEDELNKDdfelKKENLEKEIDEKNKEIEELK-QTQKSLKKKQE-EKQELIDQ 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 710 YERTHLQLRSEL-------DKVNKEMTAVQECYLEVCREKDHLESTLRKTTEKEQQTQEKLLEERE---EYVSKLQVELE 779
Cdd:TIGR04523 594 KEKEKKDLIKEIeekekkiSSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNkwpEIIKKIKESKT 673
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622953050 780 KKYQDTLMMEksKWLKDQETDIKQQV-----ENEVILAKAHWDKEQKEIKEklIQQLEKEwqskLDQTIKAMKKKTSD 852
Cdd:TIGR04523 674 KIDDIIELMK--DWLKELSLHYKKYItrmirIKDLPKLEEKYKEIEKELKK--LDEFSKE----LENIIKNFNKKFDD 743
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
347-1069 |
2.35e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 347 DLHHSESLQRAReqheSVVMGLTKKYEEQVLSLQKNLDATVTALKEQEDICSRLKDHVKQLERNQEAIKLEKTEIINRLT 426
Cdd:pfam05483 69 DFENSEGLSRLY----SKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENK 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 427 RSLEESQ--KQCAHLLQSGSVQEVAQLQFQLQQAQKAHTMSENMNKALQEELTELkDEISLYESAAKLGIHPSDSEGELN 504
Cdd:pfam05483 145 DLIKENNatRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAF-EELRVQAENARLEMHFKLKEDHEK 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 505 IE-LTESYVdlgiKKVNWKKSKVNSIVQQEDPNEELSKD-EFIL------------KLKAEVQRLLGSNSMKRRLVSQLQ 570
Cdd:pfam05483 224 IQhLEEEYK----KEINDKEKQVSLLLIQITEKENKMKDlTFLLeesrdkanqleeKTKLQDENLKELIEKKDHLTKELE 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 571 nDLKDCHKKIEDLHQVKRDEKSIEVETKTDTSEKPKNQLwlesSTSDIVRDDILLLKNEIQVLQQQNQELKETEEKLRNT 650
Cdd:pfam05483 300 -DIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQM----EELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEK 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 651 NQDlcnQMRQMVQDFdhdKREAVDRCERTYQQHHEAMKTQIRESLLAkhalEKQQLFEAYERTHlQLRSELDKVNKEMTa 730
Cdd:pfam05483 375 NED---QLKIITMEL---QKKSSELEEMTKFKNNKEVELEELKKILA----EDEKLLDEKKQFE-KIAEELKGKEQELI- 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 731 vqecYLEVCREKD--HLESTLRKTTEKEQQTQEKlleereeyVSKLQVELEK-KYQDTLMMEKSKWLKDQETDIKQQVEN 807
Cdd:pfam05483 443 ----FLLQAREKEihDLEIQLTAIKTSEEHYLKE--------VEDLKTELEKeKLKNIELTAHCDKLLLENKELTQEASD 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 808 EVILAKAHWDK--EQKEIKEKLIQQLE--KEWQSKLDQTIKAMKKKTSDRGsqtdqvttsdviskkemaimiEEQKCIIQ 883
Cdd:pfam05483 511 MTLELKKHQEDiiNCKKQEERMLKQIEnlEEKEMNLRDELESVREEFIQKG---------------------DEVKCKLD 569
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 884 QHLEQEKDIAIKGAMKKLEIELELKHCENIAKQVEiavqnARQRWLGELPELAEYQALVRAEQKKWEEQHEVSVNKrISF 963
Cdd:pfam05483 570 KSEENARSIEYEVLKKEKQMKILENKCNNLKKQIE-----NKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK-LEL 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 964 AVSEAKEKWKSELENMKKNILPGTELEEKIH--------------SLQRELELKNEEVPVVIRAELAKARSEWNKEKQEE 1029
Cdd:pfam05483 644 ELASAKQKFEEIIDNYQKEIEDKKISEEKLLeevekakaiadeavKLQKEIDKRCQHKIAEMVALMEKHKHQYDKIIEER 723
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1622953050 1030 -----IRRIQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQKTE 1069
Cdd:pfam05483 724 dselgLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
537-828 |
3.17e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 537 EELSKDEFILKLKAEVQrllgsNSMKRrlvsqlQNDLKDCHKKIEDLHQV--KRDEKSIEVETKTDTSEKPKNQLWLESS 614
Cdd:COG5022 862 SLLKKETIYLQSAQRVE-----LAERQ------LQELKIDVKSISSLKLVnlELESEIIELKKSLSSDLIENLEFKTELI 930
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 615 TsdivRDDILLLKNEIQVLQQQNQELKETEEKLRNTNQDLcnqmrqmvqdfdhdkreavdrcertyqqhHEAmkTQIRES 694
Cdd:COG5022 931 A----RLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKL-----------------------------KET--SEEYED 975
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 695 LLAKHalekqqlfEAYERTHLQLRSELDKVNKEMTAVQECYLEVCREKDHLESTLRKTTEKEQQTQeKLLEEREEyvskL 774
Cdd:COG5022 976 LLKKS--------TILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASK-IISSESTE----L 1042
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1622953050 775 QVELEKKYQDTLMMEKSKWLKDQETDIKQQVENEVILAKAHWDKEQKEIKEKLI 828
Cdd:COG5022 1043 SILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTI 1096
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
352-1001 |
3.78e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 3.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 352 ESLQRAREQHESVVMGLT--KKYE---EQVLSLQKNLDATVTALKE----QEDICSRLKDHVKQLERNQEAIKlEKTEII 422
Cdd:PRK03918 138 DAILESDESREKVVRQILglDDYEnayKNLGEVIKEIKRRIERLEKfikrTENIEELIKEKEKELEEVLREIN-EISSEL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 423 NRLTRSLEESQKQCAHLLQSGSvqEVAQLQFQLQQAQKAHTMSENMNKALQEELTELKDEISLYESAAKlGIHPSDSEGE 502
Cdd:PRK03918 217 PELREELEKLEKEVKELEELKE--EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVK-ELKELKEKAE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 503 LNIELTESYVDLGIKKVNWKK------SKVNSIVQQ-EDPNEELSKDEFILKLKAEVQRLLgsnsmkrrlvsqlqNDLKD 575
Cdd:PRK03918 294 EYIKLSEFYEEYLDELREIEKrlsrleEEINGIEERiKELEEKEERLEELKKKLKELEKRL--------------EELEE 359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 576 CHKKIEDLHQVKRDEKSIEVETKTDTSEKPKNQLWLESSTSDIVRDDILLLKNEIQVLQQQNQELKETEEKLRNTnqdlc 655
Cdd:PRK03918 360 RHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKA----- 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 656 nqmrqmvqdfdhdkREAVDRCERTYQQHHeamktqiRESLLAKHALEkqqlfeayerthlqlrseLDKVNKEMTAVQECY 735
Cdd:PRK03918 435 --------------KGKCPVCGRELTEEH-------RKELLEEYTAE------------------LKRIEKELKEIEEKE 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 736 LEVCREKDHLESTLRKttEKEQQTQEKLLEEREEYVSKLQV----ELEKKYQD-TLMMEKSKWLKDQETDIKQQVE--NE 808
Cdd:PRK03918 476 RKLRKELRELEKVLKK--ESELIKLKELAEQLKELEEKLKKynleELEKKAEEyEKLKEKLIKLKGEIKSLKKELEklEE 553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 809 VILAKAHWDKEQKEIKEKLiQQLEKEWQSKLDQTIKAMKKKTSDRGSQTDQVTTSdVISKKEMAIMIEEQKciiqqHLEQ 888
Cdd:PRK03918 554 LKKKLAELEKKLDELEEEL-AELLKELEELGFESVEELEERLKELEPFYNEYLEL-KDAEKELEREEKELK-----KLEE 626
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 889 EKDIAIKgamkklEIELELKHCENIAKQVEIAVQNARQ----RWLGELPELAEYQALVRAEQKKWEEQHEvSVNKRISF- 963
Cdd:PRK03918 627 ELDKAFE------ELAETEKRLEELRKELEELEKKYSEeeyeELREEYLELSRELAGLRAELEELEKRRE-EIKKTLEKl 699
|
650 660 670
....*....|....*....|....*....|....*....
gi 1622953050 964 -AVSEAKEKWKSELENMKKNILPGTELEEKIHSLQRELE 1001
Cdd:PRK03918 700 kEELEEREKAKKELEKLEKALERVEELREKVKKYKALLK 738
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
237-532 |
5.03e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 237 NMQIIQLQVLNKAKERQLENLVEKLNESECQIRYLNHQLVIIKDEKDGLTLSLRESQKLFQNGKEREIQLEAQIKALETQ 316
Cdd:TIGR04523 341 NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 317 IQaLKVNEEQMIKKSRTTEMA-LESLKQQLVDLHHS-ESLQRAREQHESVVMGLTKKYEeqvlSLQKNLDATVTALKEQE 394
Cdd:TIGR04523 421 KE-LLEKEIERLKETIIKNNSeIKDLTNQDSVKELIiKNLDNTRESLETQLKVLSRSIN----KIKQNLEQKQKELKSKE 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 395 DICSRLKDHVKQLER--------------NQEAIKLEKTEIINRLTRSLEESQKQCAHLLQSGSVQEVAQLQFQLQQAQK 460
Cdd:TIGR04523 496 KELKKLNEEKKELEEkvkdltkkisslkeKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQ 575
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622953050 461 AHTMSENMNKALQEELTELKDEIS-LYESAAKLGIHPSDSEGELN-IELTESYVDLGIKKVNWKKSKVNSIVQQ 532
Cdd:TIGR04523 576 TQKSLKKKQEEKQELIDQKEKEKKdLIKEIEEKEKKISSLEKELEkAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
691-1107 |
7.50e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 7.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 691 IRESLLAKHALEKQQLFEAYERTHLQLRSELDKVNKEMTAVQEcylevcrekdhlestlrktTEKEQQTQEKLLEEREEY 770
Cdd:COG4717 43 IRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEE-------------------KEEEYAELQEELEELEEE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 771 VSKLQVELEKKYQDTLMMEKSKWLKDQETDiKQQVENEVILAKAHWDKEQKEIKEklIQQLEKEWQSkLDQTIKAMKKKT 850
Cdd:COG4717 104 LEELEAELEELREELEKLEKLLQLLPLYQE-LEALEAELAELPERLEELEERLEE--LRELEEELEE-LEAELAELQEEL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 851 SDRGSQTDQVTTSDVISKKEMAIMIEEQKCIIQQHLE--QEKDIAIKGAMKKLEIELELKHCENIAKQVEI--------- 919
Cdd:COG4717 180 EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEeaQEELEELEEELEQLENELEAAALEERLKEARLllliaaall 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 920 AVQNARQRWLGELPELAEYQALV------------RAEQKKWEEQHEVSVNKRISFAVSEAKEKWKSELenMKKNILPGT 987
Cdd:COG4717 260 ALLGLGGSLLSLILTIAGVLFLVlgllallflllaREKASLGKEAEELQALPALEELEEEELEELLAAL--GLPPDLSPE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 988 ELEEKIHSLQRELELKNEEVPVVIRAELAKARSEWNK-------EKQEEIRRIQEQNE--QDYRQFLDDHRNKINEVLAA 1058
Cdd:COG4717 338 ELLELLDRIEELQELLREAEELEEELQLEELEQEIAAllaeagvEDEEELRAALEQAEeyQELKEELEELEEQLEELLGE 417
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 1622953050 1059 AKEDFMKQKTELLLQKETELQTCLD--QSRREWTMQEAKRIQLEIYQYEED 1107
Cdd:COG4717 418 LEELLEALDEEELEEELEELEEELEelEEELEELREELAELEAELEQLEED 468
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
239-412 |
8.13e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.31 E-value: 8.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 239 QIIQLQVLNKAKERQLENLVEKLNESECQIRYLNHQL-----VIIKDEKDGLTLS--LRESQKLFQNGKEREIQLEAQIK 311
Cdd:pfam01576 413 QLQELQARLSESERQRAELAEKLSKLQSELESVSSLLneaegKNIKLSKDVSSLEsqLQDTQELLQEETRQKLNLSTRLR 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622953050 312 ALETQIQALKVNEEQMIKKSRTTEMALESLKQQLVDLHHS--------ESLQRAREQHESVVMGLTKKYEEQVLSLQKnL 383
Cdd:pfam01576 493 QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKleedagtlEALEEGKKRLQRELEALTQQLEEKAAAYDK-L 571
|
170 180
....*....|....*....|....*....
gi 1622953050 384 DATVTALKEQEDICSRLKDHVKQLERNQE 412
Cdd:pfam01576 572 EKTKNRLQQELDDLLVDLDHQRQLVSNLE 600
|
|
|