|
Name |
Accession |
Description |
Interval |
E-value |
| LamB |
smart00281 |
Laminin B domain; |
245-370 |
4.73e-40 |
|
Laminin B domain;
Pssm-ID: 214597 Cd Length: 127 Bit Score: 144.33 E-value: 4.73e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 245 RPDPVYFVAPAKFLGNQQVSYGQSLSFDYRVD--RGGRHPSAHDVILEGAGLRITAPLMplGKTLPCGLTK-TYTLRLNE 321
Cdd:smart00281 1 DNEPVYWVAPEQFLGDKVTSYGGKLRYTLSFDgrRGGTHVSAPDVILEGNGLRISHPAE--GPPLPDELTTvEVRFREEN 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 966923133 322 HPSSNWSPQLSYfEYRRLLRNLTALRIRATYGEYSTG-YIDNVTLISARP 370
Cdd:smart00281 79 WQYYGGRPVTRE-DLMMVLANLTAILIRATYSQQMAGsRLSDVSLEVAVP 127
|
|
| Laminin_B |
pfam00052 |
Laminin B (Domain IV); |
250-380 |
1.11e-36 |
|
Laminin B (Domain IV);
Pssm-ID: 459652 Cd Length: 136 Bit Score: 135.09 E-value: 1.11e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 250 YFVAPAKFLGNQQVSYGQSLSFDYRVDRGGRHPSAH---DVILEGAGLRITAPLMPLGKTLPcGLTKTYTLRLNEHpssN 326
Cdd:pfam00052 1 YWSAPEQFLGNKLTSYGGYLTYTVRYEPLPGGGSLNsepDVILEGNGLRLSYSSPDQPPPDP-GQEQTYSVRLHEE---N 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 327 W----SPQLSYFEYRRLLRNLTALRIRATYGEYSTG-YIDNVTLISARP-VSGAPAPWVE 380
Cdd:pfam00052 77 WrdsdGAPVSREDFMMVLANLTAILIRATYSTGSGQvSLSNVSLDSAVPgGSGPPASWVE 136
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
614-1174 |
4.34e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.00 E-value: 4.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 614 NQVKIQMdqFMQQLQ-RMEALISKAQggdgavldTELEGRMQQAEQAlrdilrdaqisEGASRSLGLQLA----KVRSQE 688
Cdd:pfam15921 254 SQNKIEL--LLQQHQdRIEQLISEHE--------VEITGLTEKASSA-----------RSQANSIQSQLEiiqeQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 689 NSYRSRLDDLKMTVervralgSQYQNQVRDTHRLIT------QMQLSLAESEASLGNTNipaSDHYVGPNGF------KS 756
Cdd:pfam15921 313 SMYMRQLSDLESTV-------SQLRSELREAKRMYEdkieelEKQLVLANSELTEARTE---RDQFSQESGNlddqlqKL 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 757 LAQEATRLAESHVESASN-------------MEQLTKETEDYSK--QALSLVHKALREGGGSGSGSlDGAVVQGVVEKLE 821
Cdd:pfam15921 383 LADLHKREKELSLEKEQNkrlwdrdtgnsitIDHLRRELDDRNMevQRLEALLKAMKSECQGQMER-QMAAIQGKNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 822 KTKSLAQQL--TREATQAETEADRSYQHSLRlldsvSQLQGVNDQTFQVEEAKRIKQKADS----LSSLVTRHMDEFKRA 895
Cdd:pfam15921 462 KVSSLTAQLesTKEMLRKVVEELTAKKMTLE-----SSERTVSDLTASLQEKERAIEATNAeitkLRSRVDLKLQELQHL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 896 qKNLGDWKEETQ---QLLQNGKNGREKSDQLLSRA--NLAKSRAQEALSMGnatfyeveSILKNLREFDLQVDNRKAEAE 970
Cdd:pfam15921 537 -KNEGDHLRNVQtecEALKLQMAEKDKVIEILRQQieNMTQLVGQHGRTAG--------AMQVEKAQLEKEINDRRLELQ 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 971 EaMKRLsyisqkvsdaSDKTQQAERALGSAAADAQRAK----NGAREALKISSEIEQEIGSLNLEANVTadgalamEKGL 1046
Cdd:pfam15921 608 E-FKIL----------KDKKDAKIRELEARVSDLELEKvklvNAGSERLRAVKDIKQERDQLLNEVKTS-------RNEL 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1047 ASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKNT--------------GVTIQDTLNTLDGLLYLMDQP 1112
Cdd:pfam15921 670 NSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTlksmegsdghamkvAMGMQKQITAKRGQIDALQSK 749
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966923133 1113 VSIDEEGLILLEQK---LSRAKNQINSQLRPMMSELEERArrqrGHLHLLETSIDGILADVKNLE 1174
Cdd:pfam15921 750 IQFLEEAMTNANKEkhfLKEEKNKLSQELSTVATEKNKMA----GELEVLRSQERRLKEKVANME 810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
614-1178 |
1.06e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 614 NQVKIQMDQFMQQLQRMEALIskaqggdgavldTELEGRMQQAEQALRDILRDAQISEGASRSLGLQLAKVRSQENSYRS 693
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAEL------------EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 694 RLDDLKMTVER----VRALGSQYQNQVRDTHRL----ITQMQLSLAESEASLGNTNIPASDHYVgpngfksLAQEATRLA 765
Cdd:TIGR02168 408 RLERLEDRRERlqqeIEELLKKLEEAELKELQAeleeLEEELEELQEELERLEEALEELREELE-------EAEQALDAA 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 766 ESHVESASN----MEQLTKETEDYSKQALSLVHKALRegggsgSGSLDGAVVQG--VVEKLEKTKSLA-----QQLTRE- 833
Cdd:TIGR02168 481 ERELAQLQArldsLERLQENLEGFSEGVKALLKNQSG------LSGILGVLSELisVDEGYEAAIEAAlggrlQAVVVEn 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 834 --------ATQAETEADRSyqhslrlldSVSQLQGVNDQTFQVEEAKRIKQKADSLSSLVtRHMDEFKRAQKNLGDW--- 902
Cdd:TIGR02168 555 lnaakkaiAFLKQNELGRV---------TFLPLDSIKGTEIQGNDREILKNIEGFLGVAK-DLVKFDPKLRKALSYLlgg 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 903 -------KEETQQLLQNGKNGR---EKSDQLLSRANLAKSRAQEALSMGNATfYEVESILKNLREFDLQVDNRKAEAEEA 972
Cdd:TIGR02168 625 vlvvddlDNALELAKKLRPGYRivtLDGDLVRPGGVITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAEL 703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 973 MKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAREALKISSEIEQEIGSLNLEANVTADgalamekGLASLKSE 1052
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE-------RLEEAEEE 776
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1053 MREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKNTGVTIQDTLNTLDGLlylmdqpvsidEEGLILLEQKLSRAKN 1132
Cdd:TIGR02168 777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL-----------ERRIAATERRLEDLEE 845
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 966923133 1133 QINSqlrpmMSELEERARRQRGHlhlLETSIDGILADVKNLENIRD 1178
Cdd:TIGR02168 846 QIEE-----LSEDIESLAAEIEE---LEELIEELESELEALLNERA 883
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
83-127 |
1.89e-12 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 62.76 E-value: 1.89e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 966923133 83 PCNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHMLTDAG 127
Cdd:cd00055 1 PCDCNGHGSLSGQCDpGTGQCECKPNTTGRRCDRCAPGYYGLPSQG 46
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
84-128 |
4.98e-12 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 61.56 E-value: 4.98e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 966923133 84 CNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHMLTDAGC 128
Cdd:smart00180 1 CDCDPGGSASGTCDpDTGQCECKPNVTGRRCDRCAPGYYGDGPPGC 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
647-1180 |
8.07e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 8.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 647 TELEGRMQ----QAEQA-----LRDILRDAQISEGAS--RSLGLQLAKVRSQENSYRSRLDDLKMTVERVRALGSQYQNQ 715
Cdd:COG1196 196 GELERQLEplerQAEKAeryreLKEELKELEAELLLLklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 716 VRDTHRLITQMQLSLAESEASLGNTNipasdhyvgpNGFKSLAQEATRLAESHVESASNMEQLTKETEDYSKQALSLVHK 795
Cdd:COG1196 276 LEELELELEEAQAEEYELLAELARLE----------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 796 ALREGggsgsgsldgAVVQGVVEKLEKTKSLAQQLTREATQAETEADRSYQHSLRLLDSVSQLQGVNDQTFQVEEAK--- 872
Cdd:COG1196 346 LEEAE----------EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALler 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 873 --RIKQKADSLSSLVTRHMDEFKRAQKNLGDWKEETQQLLQNGKNGREKSDQLLSRANLAKSRAQEALSMGNATFYEVES 950
Cdd:COG1196 416 leRLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 951 ILKNLREFDLQVDNRKAEAEEAMKRLsyISQKVSDASDKTQQAERALgsAAADAQRAKNGAREALKISSEIEQEIGSLNL 1030
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRG--LAGAVAVLIGVEAAYEAAL--EAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1031 EAnVTADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKNTGVTIQDTLNTLDGLLYLmd 1110
Cdd:COG1196 572 GR-ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE-- 648
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1111 qpVSIDEEGLILLEQKLSRAKNQINSQLRPMMSELEERARRQRGHLHLLETSIDGILADVKNLENIRDNL 1180
Cdd:COG1196 649 --VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
139-184 |
1.11e-11 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 60.44 E-value: 1.11e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 966923133 139 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYNLDRGNPEGC 184
Cdd:pfam00053 1 CDCNPHGSLSDtCDPetGQCLCKPGVTGRHCDRCKPGYYGLPSDPPQGC 49
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
84-123 |
1.15e-11 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 60.44 E-value: 1.15e-11
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 966923133 84 CNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHML 123
Cdd:pfam00053 1 CDCNPHGSLSDTCDpETGQCLCKPGVTGRHCDRCKPGYYGL 41
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
516-565 |
1.29e-10 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 57.75 E-value: 1.29e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 966923133 516 PCQCNNNvdPSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDPLAPN 565
Cdd:cd00055 1 PCDCNGH--GSLSGQCDPGTGQCE-CKPNTTGRRCDRCAPGYYGLPSQGG 47
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
517-564 |
6.20e-10 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 55.82 E-value: 6.20e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 966923133 517 CQCNNNVdpSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDPLAP 564
Cdd:pfam00053 1 CDCNPHG--SLSDTCDPETGQCL-CKPGVTGRHCDRCKPGYYGLPSDP 45
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
139-184 |
1.02e-09 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 55.01 E-value: 1.02e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 966923133 139 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYNLdrgNPEGC 184
Cdd:smart00180 1 CDCDPGGSASGtCDPdtGQCECKPNVTGRRCDRCAPGYYGD---GPPGC 46
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
139-185 |
3.04e-09 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 53.90 E-value: 3.04e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 966923133 139 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYNLDRgNPEGCT 185
Cdd:cd00055 2 CDCNGHGSLSGqCDPgtGQCECKPNTTGRRCDRCAPGYYGLPS-QGGGCQ 50
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
517-561 |
6.85e-08 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 49.62 E-value: 6.85e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 966923133 517 CQCNnnVDPSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDP 561
Cdd:smart00180 1 CDCD--PGGSASGTCDPDTGQCE-CKPNVTGRRCDRCAPGYYGDG 42
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
648-1180 |
1.45e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 648 ELEGRMQQAEQALRDILRdaQISEGAS--RSLGLQLAKVRSQensyRSRLDDLKMTVERVRALGSQYQNQVRDTHRLITQ 725
Cdd:PRK03918 190 NIEELIKEKEKELEEVLR--EINEISSelPELREELEKLEKE----VKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 726 MQLSLAESEASLgntnipasdhyvgpngfKSLAQEATRLAESHvESASNMEQLTKETEDYsKQALSLVHKALREGGGSGs 805
Cdd:PRK03918 264 LEERIEELKKEI-----------------EELEEKVKELKELK-EKAEEYIKLSEFYEEY-LDELREIEKRLSRLEEEI- 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 806 gsldgAVVQGVVEKLEKTKSLAQQLTREATQAETEADRsYQHSLRLLDSVSQLQGVNDQ---TFQVEEAKRIKQKADSLS 882
Cdd:PRK03918 324 -----NGIEERIKELEEKEERLEELKKKLKELEKRLEE-LEERHELYEEAKAKKEELERlkkRLTGLTPEKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 883 SLVTRHMDEFKRAQKNLGDWKEETQQL------LQNGKN-----GREKSDQllSRANL-AKSRAqealsmgnatfyEVES 950
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELkkaieeLKKAKGkcpvcGRELTEE--HRKELlEEYTA------------ELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 951 ILKNLREFDLQVDNRKAEAEEAMKRLSYISQ--KVSDASDKTQQAERALGS-AAADAQRAKNGAREALKISSEIEQEIGS 1027
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1028 LNLEANVTADgalaMEKGLASLKSEMREVEGEL-----ERKELEFDTnMDAVQMVITE---AQRVDTRAKNTGVTIQDTL 1099
Cdd:PRK03918 544 LKKELEKLEE----LKKKLAELEKKLDELEEELaellkELEELGFES-VEELEERLKElepFYNEYLELKDAEKELEREE 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1100 NTLDGLLYLMDQPvsidEEGLILLEQKLSRAKNQINS-----------QLRPMMSELEERARRQRGHLHLLETSIDGILA 1168
Cdd:PRK03918 619 KELKKLEEELDKA----FEELAETEKRLEELRKELEElekkyseeeyeELREEYLELSRELAGLRAELEELEKRREEIKK 694
|
570
....*....|..
gi 966923133 1169 DVKNLENIRDNL 1180
Cdd:PRK03918 695 TLEKLKEELEER 706
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
461-509 |
1.25e-06 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 46.19 E-value: 1.25e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 966923133 461 PCPCHNGFSCSVMPETEEVVCNnCPPGVTGARCELCADGYFGDPFGEHG 509
Cdd:cd00055 1 PCDCNGHGSLSGQCDPGTGQCE-CKPNTTGRRCDRCAPGYYGLPSQGGG 48
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
572-604 |
4.78e-06 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 44.65 E-value: 4.78e-06
10 20 30
....*....|....*....|....*....|....
gi 966923133 572 ACNCNPMGSEPVEC-RSDGTCVCKPGFGGPNCEH 604
Cdd:cd00055 1 PCDCNGHGSLSGQCdPGTGQCECKPNTTGRRCDR 34
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
462-508 |
7.37e-06 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 44.22 E-value: 7.37e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 966923133 462 CPCHNGFSCSVMPETEEVVCNnCPPGVTGARCELCADGYFGDPFGEH 508
Cdd:smart00180 1 CDCDPGGSASGTCDPDTGQCE-CKPNVTGRRCDRCAPGYYGDGPPGC 46
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
573-604 |
2.18e-05 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 42.73 E-value: 2.18e-05
10 20 30
....*....|....*....|....*....|...
gi 966923133 573 CNCNPMGSEPVEC-RSDGTCVCKPGFGGPNCEH 604
Cdd:pfam00053 1 CDCNPHGSLSDTCdPETGQCLCKPGVTGRHCDR 33
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
573-604 |
3.99e-05 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 41.91 E-value: 3.99e-05
10 20 30
....*....|....*....|....*....|...
gi 966923133 573 CNCNPMGSEPVECRSD-GTCVCKPGFGGPNCEH 604
Cdd:smart00180 1 CDCDPGGSASGTCDPDtGQCECKPNVTGRRCDR 33
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
650-1088 |
5.22e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 44.43 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 650 EGRMQQAEQALRDILRDAQ--ISEgASRSLGLQLAKVRSQeNSYRSRldDLKMTVERVralgsqYQNQVRDTHRLITQMQ 727
Cdd:NF041483 264 EQRMQEAEEALREARAEAEkvVAE-AKEAAAKQLASAESA-NEQRTR--TAKEEIARL------VGEATKEAEALKAEAE 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 728 LSLAESEAslgntnipasdhyvgpngfkslaqEATRLAESHVESASnmeqlTKETEDYSKQalslVHKALREGGgsgsgs 807
Cdd:NF041483 334 QALADARA------------------------EAEKLVAEAAEKAR-----TVAAEDTAAQ----LAKAARTAE------ 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 808 ldgavvqgvvEKLEKTKSLAQQLTREAT--------QAETEADRsyqhsLR--LLDSVSQLQG-VNDQTFQV-------- 868
Cdd:NF041483 375 ----------EVLTKASEDAKATTRAAAeeaerirrEAEAEADR-----LRgeAADQAEQLKGaAKDDTKEYraktvelq 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 869 EEAKRIKQKADSLSSlvtrhmDEFKRAQKNLGDW-KEETQQLLQNGKNGRE-------KSDQLLSRAN------------ 928
Cdd:NF041483 440 EEARRLRGEAEQLRA------EAVAEGERIRGEArREAVQQIEEAARTAEElltkakaDADELRSTATaeservrteaie 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 929 ------------LAKSRAQ------EALSMGNATFYEVESILKNLR-EFDLQVDNRKAEAEEAMKRLSyisqkvSDASDK 989
Cdd:NF041483 514 rattlrrqaeetLERTRAEaerlraEAEEQAEEVRAAAERAARELReETERAIAARQAEAAEELTRLH------TEAEER 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 990 TQQAERALGSAAADAQRA-KNGAREALKISSEI-----------EQEIGSLNLEANVTADGALAMEKGLA-SLKSemrEV 1056
Cdd:NF041483 588 LTAAEEALADARAEAERIrREAAEETERLRTEAaerirtlqaqaEQEAERLRTEAAADASAARAEGENVAvRLRS---EA 664
|
490 500 510
....*....|....*....|....*....|...
gi 966923133 1057 EGELERKELEFDTNMDAVQM-VITEAQRVDTRA 1088
Cdd:NF041483 665 AAEAERLKSEAQESADRVRAeAAAAAERVGTEA 697
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
28-86 |
5.88e-04 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 38.87 E-value: 5.88e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923133 28 CDCNG---KSRQCifdqelYRQTGngfRCLnCNDNTDGIHCERCKDGFYRHRerdRCLPCNC 86
Cdd:pfam00053 1 CDCNPhgsLSDTC------DPETG---QCL-CKPGVTGRHCDRCKPGYYGLP---SDPPQGC 49
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
28-78 |
2.23e-03 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 37.33 E-value: 2.23e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 966923133 28 CDCNG---KSRQCifdqelYRQTGngfRCLnCNDNTDGIHCERCKDGFYRHRER 78
Cdd:cd00055 2 CDCNGhgsLSGQC------DPGTG---QCE-CKPNTTGRRCDRCAPGYYGLPSQ 45
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
484-509 |
2.31e-03 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 36.95 E-value: 2.31e-03
10 20
....*....|....*....|....*.
gi 966923133 484 CPPGVTGARCELCADGYFGDPFGEHG 509
Cdd:pfam00053 22 CKPGVTGRHCDRCKPGYYGLPSDPPQ 47
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
891-1090 |
5.35e-03 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 39.74 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 891 EFKRAQKNLGDWKEETQQLLQNGKNGREKSdqllsranlaksraqealsmgnatfyEVESILKNLREFDLQVDNRK---- 966
Cdd:cd00176 4 QFLRDADELEAWLSEKEELLSSTDYGDDLE--------------------------SVEALLKKHEALEAELAAHEerve 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 967 ---AEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAREALKISSEIEQEIGSLN-LEANVTADGALAM 1042
Cdd:cd00176 58 alnELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEeKEAALASEDLGKD 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 966923133 1043 EKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKN 1090
Cdd:cd00176 138 LESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIE 185
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
645-1091 |
7.36e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 40.58 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 645 LDTELEGRMQQAEQALRDILRDAQisegasrslglqlaKVRSQ--ENSYRSRLDdlkmTVERVRALGSQYQnqvRDTHRL 722
Cdd:NF041483 580 LHTEAEERLTAAEEALADARAEAE--------------RIRREaaEETERLRTE----AAERIRTLQAQAE---QEAERL 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 723 ITQMQLSLAESEASLGNTNIP-ASDHYVGPNGFKSLAQE-ATRLaesHVESASNMEQLTKEtedySKQALSLVHKALREG 800
Cdd:NF041483 639 RTEAAADASAARAEGENVAVRlRSEAAAEAERLKSEAQEsADRV---RAEAAAAAERVGTE----AAEALAAAQEEAARR 711
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 801 GGSGSGSLDGAVVQGVVE-----------------KLEKTKSLAQQLTREATQAETE-ADRSYQHSLRLLDSVSQLQgvn 862
Cdd:NF041483 712 RREAEETLGSARAEADQErerareqseellasarkRVEEAQAEAQRLVEEADRRATElVSAAEQTAQQVRDSVAGLQ--- 788
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 863 dqtfqvEEAkriKQKADSLSSlVTRHMDEFKRAQKnlgdwKEETQQLLQNGKNGREKSDQllsRANLAKSRAQEalsmgn 942
Cdd:NF041483 789 ------EQA---EEEIAGLRS-AAEHAAERTRTEA-----QEEADRVRSDAYAERERASE---DANRLRREAQE------ 844
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 943 atfyEVESIlKNLREfdLQVDNRKAEAEEAMKRLSYISQKV-SDASDKTQQAERalgsaaaDAQRAKNGARE-ALKISSE 1020
Cdd:NF041483 845 ----ETEAA-KALAE--RTVSEAIAEAERLRSDASEYAQRVrTEASDTLASAEQ-------DAARTRADAREdANRIRSD 910
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966923133 1021 IEQEIGSLNLEANVTADGALAMEKGLAslksEMREVEGELERKELEFDTNMDAVQMV---ITEAQRVDTRAKNT 1091
Cdd:NF041483 911 AAAQADRLIGEATSEAERLTAEARAEA----ERLRDEARAEAERVRADAAAQAEQLIaeaTGEAERLRAEAAET 980
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
28-75 |
9.90e-03 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 35.36 E-value: 9.90e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 966923133 28 CDCNG---KSRQCIFDqelyrqtgnGFRCLnCNDNTDGIHCERCKDGFYRH 75
Cdd:smart00180 1 CDCDPggsASGTCDPD---------TGQCE-CKPNVTGRRCDRCAPGYYGD 41
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| LamB |
smart00281 |
Laminin B domain; |
245-370 |
4.73e-40 |
|
Laminin B domain;
Pssm-ID: 214597 Cd Length: 127 Bit Score: 144.33 E-value: 4.73e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 245 RPDPVYFVAPAKFLGNQQVSYGQSLSFDYRVD--RGGRHPSAHDVILEGAGLRITAPLMplGKTLPCGLTK-TYTLRLNE 321
Cdd:smart00281 1 DNEPVYWVAPEQFLGDKVTSYGGKLRYTLSFDgrRGGTHVSAPDVILEGNGLRISHPAE--GPPLPDELTTvEVRFREEN 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 966923133 322 HPSSNWSPQLSYfEYRRLLRNLTALRIRATYGEYSTG-YIDNVTLISARP 370
Cdd:smart00281 79 WQYYGGRPVTRE-DLMMVLANLTAILIRATYSQQMAGsRLSDVSLEVAVP 127
|
|
| Laminin_B |
pfam00052 |
Laminin B (Domain IV); |
250-380 |
1.11e-36 |
|
Laminin B (Domain IV);
Pssm-ID: 459652 Cd Length: 136 Bit Score: 135.09 E-value: 1.11e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 250 YFVAPAKFLGNQQVSYGQSLSFDYRVDRGGRHPSAH---DVILEGAGLRITAPLMPLGKTLPcGLTKTYTLRLNEHpssN 326
Cdd:pfam00052 1 YWSAPEQFLGNKLTSYGGYLTYTVRYEPLPGGGSLNsepDVILEGNGLRLSYSSPDQPPPDP-GQEQTYSVRLHEE---N 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 327 W----SPQLSYFEYRRLLRNLTALRIRATYGEYSTG-YIDNVTLISARP-VSGAPAPWVE 380
Cdd:pfam00052 77 WrdsdGAPVSREDFMMVLANLTAILIRATYSTGSGQvSLSNVSLDSAVPgGSGPPASWVE 136
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
614-1174 |
4.34e-13 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.00 E-value: 4.34e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 614 NQVKIQMdqFMQQLQ-RMEALISKAQggdgavldTELEGRMQQAEQAlrdilrdaqisEGASRSLGLQLA----KVRSQE 688
Cdd:pfam15921 254 SQNKIEL--LLQQHQdRIEQLISEHE--------VEITGLTEKASSA-----------RSQANSIQSQLEiiqeQARNQN 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 689 NSYRSRLDDLKMTVervralgSQYQNQVRDTHRLIT------QMQLSLAESEASLGNTNipaSDHYVGPNGF------KS 756
Cdd:pfam15921 313 SMYMRQLSDLESTV-------SQLRSELREAKRMYEdkieelEKQLVLANSELTEARTE---RDQFSQESGNlddqlqKL 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 757 LAQEATRLAESHVESASN-------------MEQLTKETEDYSK--QALSLVHKALREGGGSGSGSlDGAVVQGVVEKLE 821
Cdd:pfam15921 383 LADLHKREKELSLEKEQNkrlwdrdtgnsitIDHLRRELDDRNMevQRLEALLKAMKSECQGQMER-QMAAIQGKNESLE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 822 KTKSLAQQL--TREATQAETEADRSYQHSLRlldsvSQLQGVNDQTFQVEEAKRIKQKADS----LSSLVTRHMDEFKRA 895
Cdd:pfam15921 462 KVSSLTAQLesTKEMLRKVVEELTAKKMTLE-----SSERTVSDLTASLQEKERAIEATNAeitkLRSRVDLKLQELQHL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 896 qKNLGDWKEETQ---QLLQNGKNGREKSDQLLSRA--NLAKSRAQEALSMGnatfyeveSILKNLREFDLQVDNRKAEAE 970
Cdd:pfam15921 537 -KNEGDHLRNVQtecEALKLQMAEKDKVIEILRQQieNMTQLVGQHGRTAG--------AMQVEKAQLEKEINDRRLELQ 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 971 EaMKRLsyisqkvsdaSDKTQQAERALGSAAADAQRAK----NGAREALKISSEIEQEIGSLNLEANVTadgalamEKGL 1046
Cdd:pfam15921 608 E-FKIL----------KDKKDAKIRELEARVSDLELEKvklvNAGSERLRAVKDIKQERDQLLNEVKTS-------RNEL 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1047 ASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKNT--------------GVTIQDTLNTLDGLLYLMDQP 1112
Cdd:pfam15921 670 NSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTlksmegsdghamkvAMGMQKQITAKRGQIDALQSK 749
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966923133 1113 VSIDEEGLILLEQK---LSRAKNQINSQLRPMMSELEERArrqrGHLHLLETSIDGILADVKNLE 1174
Cdd:pfam15921 750 IQFLEEAMTNANKEkhfLKEEKNKLSQELSTVATEKNKMA----GELEVLRSQERRLKEKVANME 810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
614-1178 |
1.06e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.78 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 614 NQVKIQMDQFMQQLQRMEALIskaqggdgavldTELEGRMQQAEQALRDILRDAQISEGASRSLGLQLAKVRSQENSYRS 693
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAEL------------EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 694 RLDDLKMTVER----VRALGSQYQNQVRDTHRL----ITQMQLSLAESEASLGNTNIPASDHYVgpngfksLAQEATRLA 765
Cdd:TIGR02168 408 RLERLEDRRERlqqeIEELLKKLEEAELKELQAeleeLEEELEELQEELERLEEALEELREELE-------EAEQALDAA 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 766 ESHVESASN----MEQLTKETEDYSKQALSLVHKALRegggsgSGSLDGAVVQG--VVEKLEKTKSLA-----QQLTRE- 833
Cdd:TIGR02168 481 ERELAQLQArldsLERLQENLEGFSEGVKALLKNQSG------LSGILGVLSELisVDEGYEAAIEAAlggrlQAVVVEn 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 834 --------ATQAETEADRSyqhslrlldSVSQLQGVNDQTFQVEEAKRIKQKADSLSSLVtRHMDEFKRAQKNLGDW--- 902
Cdd:TIGR02168 555 lnaakkaiAFLKQNELGRV---------TFLPLDSIKGTEIQGNDREILKNIEGFLGVAK-DLVKFDPKLRKALSYLlgg 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 903 -------KEETQQLLQNGKNGR---EKSDQLLSRANLAKSRAQEALSMGNATfYEVESILKNLREFDLQVDNRKAEAEEA 972
Cdd:TIGR02168 625 vlvvddlDNALELAKKLRPGYRivtLDGDLVRPGGVITGGSAKTNSSILERR-REIEELEEKIEELEEKIAELEKALAEL 703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 973 MKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAREALKISSEIEQEIGSLNLEANVTADgalamekGLASLKSE 1052
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE-------RLEEAEEE 776
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1053 MREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKNTGVTIQDTLNTLDGLlylmdqpvsidEEGLILLEQKLSRAKN 1132
Cdd:TIGR02168 777 LAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL-----------ERRIAATERRLEDLEE 845
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 966923133 1133 QINSqlrpmMSELEERARRQRGHlhlLETSIDGILADVKNLENIRD 1178
Cdd:TIGR02168 846 QIEE-----LSEDIESLAAEIEE---LEELIEELESELEALLNERA 883
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
83-127 |
1.89e-12 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 62.76 E-value: 1.89e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 966923133 83 PCNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHMLTDAG 127
Cdd:cd00055 1 PCDCNGHGSLSGQCDpGTGQCECKPNTTGRRCDRCAPGYYGLPSQG 46
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
84-128 |
4.98e-12 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 61.56 E-value: 4.98e-12
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 966923133 84 CNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHMLTDAGC 128
Cdd:smart00180 1 CDCDPGGSASGTCDpDTGQCECKPNVTGRRCDRCAPGYYGDGPPGC 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
647-1180 |
8.07e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 8.07e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 647 TELEGRMQ----QAEQA-----LRDILRDAQISEGAS--RSLGLQLAKVRSQENSYRSRLDDLKMTVERVRALGSQYQNQ 715
Cdd:COG1196 196 GELERQLEplerQAEKAeryreLKEELKELEAELLLLklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 716 VRDTHRLITQMQLSLAESEASLGNTNipasdhyvgpNGFKSLAQEATRLAESHVESASNMEQLTKETEDYSKQALSLVHK 795
Cdd:COG1196 276 LEELELELEEAQAEEYELLAELARLE----------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 796 ALREGggsgsgsldgAVVQGVVEKLEKTKSLAQQLTREATQAETEADRSYQHSLRLLDSVSQLQGVNDQTFQVEEAK--- 872
Cdd:COG1196 346 LEEAE----------EELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALler 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 873 --RIKQKADSLSSLVTRHMDEFKRAQKNLGDWKEETQQLLQNGKNGREKSDQLLSRANLAKSRAQEALSMGNATFYEVES 950
Cdd:COG1196 416 leRLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 951 ILKNLREFDLQVDNRKAEAEEAMKRLsyISQKVSDASDKTQQAERALgsAAADAQRAKNGAREALKISSEIEQEIGSLNL 1030
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRG--LAGAVAVLIGVEAAYEAAL--EAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1031 EAnVTADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKNTGVTIQDTLNTLDGLLYLmd 1110
Cdd:COG1196 572 GR-ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE-- 648
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1111 qpVSIDEEGLILLEQKLSRAKNQINSQLRPMMSELEERARRQRGHLHLLETSIDGILADVKNLENIRDNL 1180
Cdd:COG1196 649 --VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
139-184 |
1.11e-11 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 60.44 E-value: 1.11e-11
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 966923133 139 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYNLDRGNPEGC 184
Cdd:pfam00053 1 CDCNPHGSLSDtCDPetGQCLCKPGVTGRHCDRCKPGYYGLPSDPPQGC 49
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
84-123 |
1.15e-11 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 60.44 E-value: 1.15e-11
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 966923133 84 CNCNSKGSLSARCD-NSGRCSCKPGVTGARCDRCLPGFHML 123
Cdd:pfam00053 1 CDCNPHGSLSDTCDpETGQCLCKPGVTGRHCDRCKPGYYGL 41
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
614-1084 |
1.12e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 66.30 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 614 NQVKIQMDQFMQQLQRMEALISkaqggdgaVLDTELEGRMQQAEQALrdilrdaqisEGASRSLglqlAKVRSQENSYRS 693
Cdd:pfam15921 415 DHLRRELDDRNMEVQRLEALLK--------AMKSECQGQMERQMAAI----------QGKNESL----EKVSSLTAQLES 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 694 RLDDLKMTVERVRALGSQYQNqvrdTHRLITQMQLSLAESEASLGNTNipasdhyvgpngfkslaQEATRLaESHVESAS 773
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMTLES----SERTVSDLTASLQEKERAIEATN-----------------AEITKL-RSRVDLKL 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 774 NMEQLTKETEDYSKQALSLVhKALREGGGSGSGsldgaVVQGVVEKLEKTKSLAQQLTREATQAETEAdrsyqhslrlld 853
Cdd:pfam15921 531 QELQHLKNEGDHLRNVQTEC-EALKLQMAEKDK-----VIEILRQQIENMTQLVGQHGRTAGAMQVEK------------ 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 854 svSQLQG-VNDQTFQVEEAKRIKQKADS-LSSLVTRHMD-EFKRAQ---------KNLGDWKEETQQLLQNGKNGREKSD 921
Cdd:pfam15921 593 --AQLEKeINDRRLELQEFKILKDKKDAkIRELEARVSDlELEKVKlvnagserlRAVKDIKQERDQLLNEVKTSRNELN 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 922 QLLSRANLAK----SRAQEALSMGNATFYEVESILKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDAS---DKTQQAE 994
Cdd:pfam15921 671 SLSEDYEVLKrnfrNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRgqiDALQSKI 750
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 995 RALGSAAADAQRAKNGAREAlkiSSEIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAV 1074
Cdd:pfam15921 751 QFLEEAMTNANKEKHFLKEE---KNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDII 827
|
490
....*....|
gi 966923133 1075 QMVITEAQRV 1084
Cdd:pfam15921 828 QRQEQESVRL 837
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
516-565 |
1.29e-10 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 57.75 E-value: 1.29e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 966923133 516 PCQCNNNvdPSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDPLAPN 565
Cdd:cd00055 1 PCDCNGH--GSLSGQCDPGTGQCE-CKPNTTGRRCDRCAPGYYGLPSQGG 47
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
517-564 |
6.20e-10 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 55.82 E-value: 6.20e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 966923133 517 CQCNNNVdpSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDPLAP 564
Cdd:pfam00053 1 CDCNPHG--SLSDTCDPETGQCL-CKPGVTGRHCDRCKPGYYGLPSDP 45
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
625-1136 |
6.39e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 6.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 625 QQLQRMEALISKAQGGDGAVLD--TELEGRMQQAEQALRDILRDAQISEGASRSLGLQLAKVRSQENSYRSRLDDLKMTV 702
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAelARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 703 ERVRALGSQYQNQVRDTHRLITQMQLSLAESEASLGNtniPASDHYVgpngfksLAQEATRLAESHVESASNMEQLTKET 782
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE---ALRAAAE-------LAAQLEELEEAEEALLERLERLEEEL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 783 EDYSKQALSLVHKALREGGGSGSGSLDGAVVQGVVEKLEKTKSLAQQLTREATQAETEADRSYQHSLRLLDSVSQLQGVN 862
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 863 DQTFQVEEAKRIKQKADSLSSLVTRHMDEFKRAQKNLGdwkEETQQLLQNgkNGREKSDQLLSRANLAKSRAQealsmGN 942
Cdd:COG1196 504 EGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE---AALAAALQN--IVVEDDEVAAAAIEYLKAAKA-----GR 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 943 ATFYEVESI------------LKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNG 1010
Cdd:COG1196 574 ATFLPLDKIraraalaaalarGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1011 AREALKISSEIEQEIGSLNLEANVTADGALAMEKgLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKN 1090
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAER-LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEA 732
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 966923133 1091 TGVTIQDTLNTLDGLLYLMDQPVSIDEEGLILLEQKLSRAKNQINS 1136
Cdd:COG1196 733 EREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
139-184 |
1.02e-09 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 55.01 E-value: 1.02e-09
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 966923133 139 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYNLdrgNPEGC 184
Cdd:smart00180 1 CDCDPGGSASGtCDPdtGQCECKPNVTGRRCDRCAPGYYGD---GPPGC 46
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
139-185 |
3.04e-09 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 53.90 E-value: 3.04e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 966923133 139 CDCDPAGIAGP-CDA--GRCVCKPAVTGERCDRCRSGYYNLDRgNPEGCT 185
Cdd:cd00055 2 CDCNGHGSLSGqCDPgtGQCECKPNTTGRRCDRCAPGYYGLPS-QGGGCQ 50
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
863-1180 |
4.62e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 60.83 E-value: 4.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 863 DQTFQVEEAKRIKQKADSLSSLvTRHMDEFKRAQKNLGDWKEETQQ-------LLQNGKNGREKSDQLLSRAN------- 928
Cdd:TIGR00606 160 DSNWPLSEGKALKQKFDEIFSA-TRYIKALETLRQVRQTQGQKVQEhqmelkyLKQYKEKACEIRDQITSKEAqlessre 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 929 LAKSRAQEALSMGN---------ATFYEVESILKNLREFDLQVDNRKAEAEEAMKRLSY-ISQKVSDASDKTQQAERALG 998
Cdd:TIGR00606 239 IVKSYENELDPLKNrlkeiehnlSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQgTDEQLNDLYHNHQRTVREKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 999 SAAADAQR--AKNG--AREALKISSEIEQEIGSLNLEANVTADGALAMEkglaslkSEMREVEGELERKELEFDTNMD-- 1072
Cdd:TIGR00606 319 RELVDCQRelEKLNkeRRLLNQEKTELLVEQGRLQLQADRHQEHIRARD-------SLIQSLATRLELDGFERGPFSErq 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1073 ---AVQMVITEAQRVDTRAKNTGVTIQDTLNT----LDGLLYLMDQPVSIDEEGLILLEQKLSRAKNQIN--SQLRPMMS 1143
Cdd:TIGR00606 392 iknFHTLVIERQEDEAKTAAQLCADLQSKERLkqeqADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKelQQLEGSSD 471
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 966923133 1144 ---ELEERARRQRGHLHLLE--TSIDGILADVKNLENIRDNL 1180
Cdd:TIGR00606 472 rilELDQELRKAERELSKAEknSLTETLKKEVKSLQNEKADL 513
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
947-1175 |
1.97e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 1.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 947 EVESILKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKngarEALKissEIEQEIG 1026
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK----ERLE---ELEEDLS 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1027 SLnleanvtadgalamEKGLASLKSEMREVEGELERKE------------LEFDTNMDAVQMVITEAQRV-DTRAKNTGV 1093
Cdd:TIGR02169 748 SL--------------EQEIENVKSELKELEARIEELEedlhkleealndLEARLSHSRIPEIQAELSKLeEEVSRIEAR 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1094 T--IQDTLNTLDGLLYLMDQPVSIDEEGLILLE-QKLSRAKNQINSQLRpmMSELEERARRQRGHLHLLETSIDGILADV 1170
Cdd:TIGR02169 814 LreIEQKLNRLTLEKEYLEKEIQELQEQRIDLKeQIKSIEKEIENLNGK--KEELEEELEELEAALRDLESRLGDLKKER 891
|
....*
gi 966923133 1171 KNLEN 1175
Cdd:TIGR02169 892 DELEA 896
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
517-561 |
6.85e-08 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 49.62 E-value: 6.85e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 966923133 517 CQCNnnVDPSASGNCDRLTGRCLkCIHNTAGIYCDQCKAGYFGDP 561
Cdd:smart00180 1 CDCD--PGGSASGTCDPDTGQCE-CKPNVTGRRCDRCAPGYYGDG 42
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
648-1180 |
1.45e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 648 ELEGRMQQAEQALRDILRdaQISEGAS--RSLGLQLAKVRSQensyRSRLDDLKMTVERVRALGSQYQNQVRDTHRLITQ 725
Cdd:PRK03918 190 NIEELIKEKEKELEEVLR--EINEISSelPELREELEKLEKE----VKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 726 MQLSLAESEASLgntnipasdhyvgpngfKSLAQEATRLAESHvESASNMEQLTKETEDYsKQALSLVHKALREGGGSGs 805
Cdd:PRK03918 264 LEERIEELKKEI-----------------EELEEKVKELKELK-EKAEEYIKLSEFYEEY-LDELREIEKRLSRLEEEI- 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 806 gsldgAVVQGVVEKLEKTKSLAQQLTREATQAETEADRsYQHSLRLLDSVSQLQGVNDQ---TFQVEEAKRIKQKADSLS 882
Cdd:PRK03918 324 -----NGIEERIKELEEKEERLEELKKKLKELEKRLEE-LEERHELYEEAKAKKEELERlkkRLTGLTPEKLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 883 SLVTRHMDEFKRAQKNLGDWKEETQQL------LQNGKN-----GREKSDQllSRANL-AKSRAqealsmgnatfyEVES 950
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELkkaieeLKKAKGkcpvcGRELTEE--HRKELlEEYTA------------ELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 951 ILKNLREFDLQVDNRKAEAEEAMKRLSYISQ--KVSDASDKTQQAERALGS-AAADAQRAKNGAREALKISSEIEQEIGS 1027
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1028 LNLEANVTADgalaMEKGLASLKSEMREVEGEL-----ERKELEFDTnMDAVQMVITE---AQRVDTRAKNTGVTIQDTL 1099
Cdd:PRK03918 544 LKKELEKLEE----LKKKLAELEKKLDELEEELaellkELEELGFES-VEELEERLKElepFYNEYLELKDAEKELEREE 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1100 NTLDGLLYLMDQPvsidEEGLILLEQKLSRAKNQINS-----------QLRPMMSELEERARRQRGHLHLLETSIDGILA 1168
Cdd:PRK03918 619 KELKKLEEELDKA----FEELAETEKRLEELRKELEElekkyseeeyeELREEYLELSRELAGLRAELEELEKRREEIKK 694
|
570
....*....|..
gi 966923133 1169 DVKNLENIRDNL 1180
Cdd:PRK03918 695 TLEKLKEELEER 706
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
656-1036 |
2.59e-07 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 54.14 E-value: 2.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 656 AEQALRDILRDAQisegasrSLGLQLAKVRSQENSYRSRLDDLKMTVERVRALGSQYQNQVRDTHRLITQMQLSLAESEA 735
Cdd:COG4372 29 LSEQLRKALFELD-------KLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQE 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 736 SLgntnipasdhyvgpngfKSLAQEATRLAEShvesasnMEQLTKETEDYSKQAlslvhKALREGGGsgsgsldgAVVQG 815
Cdd:COG4372 102 EL-----------------ESLQEEAEELQEE-------LEELQKERQDLEQQR-----KQLEAQIA--------ELQSE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 816 VVEKLEKTKSLAQQLTReaTQAETEADRSYQHSLRLLDSVSQLQGVNDQTFQVEEAKRIKQKADSLSSLVTRHMDEFKRA 895
Cdd:COG4372 145 IAEREEELKELEEQLES--LQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLE 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 896 QKNLGDWKEETQQLLQNGKNGREKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLREFD----LQVDNRKAEAEE 971
Cdd:COG4372 223 AKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEaleeAALELKLLALLL 302
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966923133 972 AMKRLSYISQKVSDASDKTQQAERALGSAAAD--AQRAKNGAREALKISSEIEQEIGSLNLEANVTA 1036
Cdd:COG4372 303 NLAALSLIGALEDALLAALLELAKKLELALAIllAELADLLQLLLVGLLDNDVLELLSKGAEAGVAD 369
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
614-1166 |
5.71e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.15 E-value: 5.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 614 NQVKIQMDQFMQQLQRMEALISKAQGGDgavLDtELEGRMQQAEQALRDILRDAQISEGASRSLGLQLAKVRSQENSYRS 693
Cdd:COG4913 312 ERLEARLDALREELDELEAQIRGNGGDR---LE-QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRA 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 694 RLDDLKMTVERVRAlgsQYQNQVRDTHRLITQMQLSLAESE---ASL--GNTNIPASDHYVgpngfKSLAQEATRLAESH 768
Cdd:COG4913 388 EAAALLEALEEELE---ALEEALAEAEAALRDLRRELRELEaeiASLerRKSNIPARLLAL-----RDALAEALGLDEAE 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 769 VESASN-MEQLTKE--------------------TEDYSKQALSLV---HKALRegggsgsgsLDGAVVQGVVEKLEKTK 824
Cdd:COG4913 460 LPFVGElIEVRPEEerwrgaiervlggfaltllvPPEHYAAALRWVnrlHLRGR---------LVYERVRTGLPDPERPR 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 825 ----SLAQQLTREATQAETEADRSYQHSLRLL--DSVSQLQGV-------------------NDQTFQVEE-------AK 872
Cdd:COG4913 531 ldpdSLAGKLDFKPHPFRAWLEAELGRRFDYVcvDSPEELRRHpraitragqvkgngtrhekDDRRRIRSRyvlgfdnRA 610
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 873 RIKQKADSLSSLvTRHMDEFKRAQKNLGDWKEETQQLLQNGKNGREKSDQLLSRANLAKSRAQ-----EALSMGNATfye 947
Cdd:COG4913 611 KLAALEAELAEL-EEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAEleaelERLDASSDD--- 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 948 vesiLKNLREfdlQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAREALkiSSEIEQEIGS 1027
Cdd:COG4913 687 ----LAALEE---QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL--RALLEERFAA 757
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1028 LNLEAnVTADGALAMEKGLASLKSEMREVEGELERKELEFDtnmdavqmviteaQRVDTRAKNTGVTIQDtlntLDGLLY 1107
Cdd:COG4913 758 ALGDA-VERELRENLEERIDALRARLNRAEEELERAMRAFN-------------REWPAETADLDADLES----LPEYLA 819
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1108 LMDQpvsIDEEGLILLEQKLSRAKNqinsqlrpmmseleERARRQRGHL-HLLETSIDGI 1166
Cdd:COG4913 820 LLDR---LEEDGLPEYEERFKELLN--------------ENSIEFVADLlSKLRRAIREI 862
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
461-509 |
1.25e-06 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 46.19 E-value: 1.25e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 966923133 461 PCPCHNGFSCSVMPETEEVVCNnCPPGVTGARCELCADGYFGDPFGEHG 509
Cdd:cd00055 1 PCDCNGHGSLSGQCDPGTGQCE-CKPNTTGRRCDRCAPGYYGLPSQGGG 48
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
869-1100 |
4.54e-06 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 50.77 E-value: 4.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 869 EEAKR---IKQKADSLSSLVTRHMDEFKRAQKNLGDWKEETQQLLQNGKNGREKSDqllsranlaKSRAQEALSMGNATF 945
Cdd:pfam05262 210 EDAKRaqqLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPAD---------TSSPKEDKQVAENQK 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 946 YEVESILKNLREFDLQVDNRKAEAEEAMKRLSYISQKvsDASDKTQQAERALGSAAADAQRAKNGAREalKISSEIEQEI 1025
Cdd:pfam05262 281 REIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEK--EAEDKELEAQKKREPVAEDLQKTKPQVEA--QPTSLNEDAI 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1026 GSLN--LEANVTADGALAMEKGLASLKSEMREVEGELE--RKELEFDTNMDAVQMVITEA----QRVDTRAKNTGVTIQD 1097
Cdd:pfam05262 357 DSSNpvYGLKVVDPITNLSELVLIDLKTEVRLRESAQQtiRRRGLYEREKDLVAIAITSGnaklQLVDIDLKNLEVIKES 436
|
...
gi 966923133 1098 TLN 1100
Cdd:pfam05262 437 NFE 439
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
572-604 |
4.78e-06 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 44.65 E-value: 4.78e-06
10 20 30
....*....|....*....|....*....|....
gi 966923133 572 ACNCNPMGSEPVEC-RSDGTCVCKPGFGGPNCEH 604
Cdd:cd00055 1 PCDCNGHGSLSGQCdPGTGQCECKPNTTGRRCDR 34
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
627-1130 |
5.67e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 5.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 627 LQRMEALISKAQGGDGAVLDTELEGRMQQAEQAlrDILRdAQISEgASRSLGLQLAKVRSQENSYRSRLDDLKMTVERVR 706
Cdd:pfam12128 317 VAKDRSELEALEDQHGAFLDADIETAAADQEQL--PSWQ-SELEN-LEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDI 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 707 ALGSQYQNQVRDThrlitqMQLSLAESEASLGNTNIPASDHYVGPNGFKSLAQEATRLAESHVESASNMEQLTKETEDYS 786
Cdd:pfam12128 393 AGIKDKLAKIREA------RDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQL 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 787 KQALSLVHKALregggsgsgsldgavvqgvvEKLEKTKSLAQQLTREATQAETEADRSYQHSLRLLDSVSQLQGVNDQTF 866
Cdd:pfam12128 467 ENFDERIERAR--------------------EEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELE 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 867 QVEEAkrikqKADSLSslvtrhmdEFKRaqKNLGDWKEETQQLLqngkngrekSDQLLSRANLAKSRAQEALSmGNATFY 946
Cdd:pfam12128 527 LQLFP-----QAGTLL--------HFLR--KEAPDWEQSIGKVI---------SPELLHRTDLDPEVWDGSVG-GELNLY 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 947 EVesilkNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAA----------DAQRAKNGAR---- 1012
Cdd:pfam12128 582 GV-----KLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGelekasreetFARTALKNARldlr 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1013 --------EALKISSEIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVEGEL------ERKELEFDTNMDAVQMVI 1078
Cdd:pfam12128 657 rlfdekqsEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREArtekqaYWQVVEGALDAQLALLKA 736
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 966923133 1079 TEAQRVDTRAKNTGVTIQDTLNTLDGLlylmdqpvSIDEE-------GLILLEQKLSRA 1130
Cdd:pfam12128 737 AIAARRSGAKAELKALETWYKRDLASL--------GVDPDviaklkrEIRTLERKIERI 787
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
963-1173 |
6.43e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.40 E-value: 6.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 963 DNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALgsaaadAQ-RAKNGarealkisseieqeIGSLNLEANVTADGALA 1041
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAAL------EEfRQKNG--------------LVDLSEEAKLLLQQLSE 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1042 MEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKntgvtIQDTLNTLDGLL--YLMDQPVsideeg 1119
Cdd:COG3206 224 LESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQ-----LAELEAELAELSarYTPNHPD------ 292
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 966923133 1120 LILLEQKLSRAKNQINSQLRPMMSELEERARRQRGHLHLLETSIDGILADVKNL 1173
Cdd:COG3206 293 VIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| PspA_IM30 |
pfam04012 |
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
895-1062 |
6.60e-06 |
|
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 48.52 E-value: 6.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 895 AQKNLGDWKEETQQLLQNGKNGREKSDQLLSRANLAKSRAQEALSMGN-----ATFYEVESILKNLREFDLQVDNRKAEA 969
Cdd:pfam04012 34 MQSELVKARQALAQTIARQKQLERRLEQQTEQAKKLEEKAQAALTKGNeelarEALAEKKSLEKQAEALETQLAQQRSAV 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 970 EEAMKRLSYISQKVSDAsdKTQQAERALGSAAADAQRAKNGAREALKISS------EIEQEIgsLNLEANVTADGALAME 1043
Cdd:pfam04012 114 EQLRKQLAALETKIQQL--KAKKNLLKARLKAAKAQEAVQTSLGSLSTSSatdsfeRIEEKI--EEREARADAAAELASA 189
|
170 180
....*....|....*....|...
gi 966923133 1044 KGL----ASLKSEMREVEGELER 1062
Cdd:pfam04012 190 VDLdaklEQAGIQMEVSEDVLAR 212
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
462-508 |
7.37e-06 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 44.22 E-value: 7.37e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 966923133 462 CPCHNGFSCSVMPETEEVVCNnCPPGVTGARCELCADGYFGDPFGEH 508
Cdd:smart00180 1 CDCDPGGSASGTCDPDTGQCE-CKPNVTGRRCDRCAPGYYGDGPPGC 46
|
|
| TNFRSF4 |
cd13406 |
Tumor necrosis factor receptor superfamily member 4 (TNFRSF4), also known as CD134 or OXO40; ... |
437-517 |
7.59e-06 |
|
Tumor necrosis factor receptor superfamily member 4 (TNFRSF4), also known as CD134 or OXO40; TNFRSF4 (also known as OX40, ACT35, CD134, IMD16, TXGP1L) activates NF-kappaB through its interaction with adaptor proteins TRAF2 and TRAF5. It also promotes the expression of apoptosis inhibitors BCL2 and BCL2lL1/BCL2-XL, and thus suppresses apoptosis. It is primarily expressed on activated CD4+ and CD8+ T cells, where it is transiently expressed and upregulated on the most recently antigen-activated T cells within inflammatory lesions. This makes it an attractive target to modulate immune responses, i.e. TNFRSF4 (OX40) blocking agents to inhibit adverse inflammation or agonists to enhance immune responses. An artificially created biologic fusion protein, OX40-immunoglobulin (OX40-Ig), prevents OX40 from reaching the T-cell receptors, thus reducing the T-cell response. Some single nucleotide polymorphisms (SNPs) of its natural ligand OX40 ligand (OX40L, CD252), which is also found on activated T cells, have been associated with systemic lupus erythematosus.
Pssm-ID: 276911 [Multi-domain] Cd Length: 142 Bit Score: 47.01 E-value: 7.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 437 NPDIECADCPIGFYNDPHDPRSCKPCPCHNGFSCSVMPE----TEEVVCnNCPPGVT-------GARCELCADGYFGDpf 505
Cdd:cd13406 31 TQDTVCSPCEPGFYNEAVNYEPCKPCTQCNQRSGSEEKQkctkTSDTVC-RCRPGTQpldsykpGVDCVPCPPGHFSR-- 107
|
90
....*....|..
gi 966923133 506 GEHGPVRPCQPC 517
Cdd:cd13406 108 GDNQACKPWTNC 119
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
669-1154 |
7.86e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 7.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 669 ISEGASRSLGLQLAK----VRSQENSYRSRLDDLKMTVERVRALGSQYQnqvrDTHRLITqmqlslaESeaslgnTNIPA 744
Cdd:PRK04863 209 ISSAITRSLRDYLLPensgVRKAFQDMEAALRENRMTLEAIRVTQSDRD----LFKHLIT-------ES------TNYVA 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 745 SDHYVGPNGFKSLAQEATRL--------------AESHVESASNMEQLT---KETEDYSKQA---LSLVHKALREGGGSG 804
Cdd:PRK04863 272 ADYMRHANERRVHLEEALELrrelytsrrqlaaeQYRLVEMARELAELNeaeSDLEQDYQAAsdhLNLVQTALRQQEKIE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 805 SGSLDgavVQGVVEKLEKTKSLAQQLTREATQAETEADRSYQHSLRLldsVSQL----QGVNDQ---TFQVEEAKRIKQK 877
Cdd:PRK04863 352 RYQAD---LEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDEL---KSQLadyqQALDVQqtrAIQYQQAVQALER 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 878 ADSLSSLvtrhmDEFkrAQKNLGDWKEETQQLLQNGKNGREKSDQLLSRANLAKSRAQEALSMGNATFYEVE-SILKNL- 955
Cdd:PRK04863 426 AKQLCGL-----PDL--TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSrSEAWDVa 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 956 REFDLQVDNRKAEAEeamkRLSYISQKVSDA---SDKTQQAERALGSAAADAQRAKNGAREALKISSEIEQEIGSLNLEA 1032
Cdd:PRK04863 499 RELLRRLREQRHLAE----QLQQLRMRLSELeqrLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESV 574
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1033 NVTADGALAMEKGLASLKSEMRevegELERKELEFDTNMDAVQMVitEAQRVDTRAKNTGVT--IQDTLntldgllylmd 1110
Cdd:PRK04863 575 SEARERRMALRQQLEQLQARIQ----RLAARAPAWLAAQDALARL--REQSGEEFEDSQDVTeyMQQLL----------- 637
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 966923133 1111 qpvsideegliLLEQKLSRAKNQINSQLRpmmsELEERARR--QRG 1154
Cdd:PRK04863 638 -----------ERERELTVERDELAARKQ----ALDEEIERlsQPG 668
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
868-1186 |
7.93e-06 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 49.52 E-value: 7.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 868 VEEAKRIKQKADSLSSlvtrhmdEFKRAQKNLgdwkEETQQLLQNGKNGREKSDQLLSRANLAKSRAQEALSMGNATFYE 947
Cdd:COG4372 37 LFELDKLQEELEQLRE-------ELEQAREEL----EQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELES 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 948 VESILKNLREfdlQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAREALK-----ISSEIE 1022
Cdd:COG4372 106 LQEEAEELQE---ELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQelqalSEAEAE 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1023 QEIGSLNLEANVTADGALAMEKGLaslksEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKN---TGVTIQDTL 1099
Cdd:COG4372 183 QALDELLKEANRNAEKEEELAEAE-----KLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEedkEELLEEVIL 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1100 NTLDGLLYLMDQPVSIDEEGLILLEQKLSRAKNQINSQLRPMMSELEERARRQRGHLHLLETSIDGILADVKNLENIRDN 1179
Cdd:COG4372 258 KEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLA 337
|
....*..
gi 966923133 1180 LPPGCYN 1186
Cdd:COG4372 338 ELADLLQ 344
|
|
| Laminin_I |
pfam06008 |
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from ... |
720-1000 |
8.21e-06 |
|
Laminin Domain I; coiled-coil structure. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure.
Pssm-ID: 310534 [Multi-domain] Cd Length: 258 Bit Score: 48.95 E-value: 8.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 720 HRLITQMQLSLAESEASLGNTNIPASDHYVGPNGFKSLAQEATRLAESHVESASNMEQLTKETEDYSKQALSLVHKALRe 799
Cdd:pfam06008 15 YKINYNLENLTKQLQEYLSPENAHKIQIEILEKELSSLAQETEELQKKATQTLAKAQQVNAESERTLGHAKELAEAIKN- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 800 gggsgsgsldgaVVQGVVEKLEKTKSLAQQLtrEATqAETEADRSYQHSLRLLDsvsQLQGVNDQTfQVEEAKRIKQKAD 879
Cdd:pfam06008 94 ------------LIDNIKEINEKVATLGEND--FAL-PSSDLSRMLAEAQRMLG---EIRSRDFGT-QLQNAEAELKAAQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 880 SLsslvtrhmdeFKRAQKNLGDWKEETQQLLQNGKNG-REKSDQL-----LSRANLAKSRAQEALSMGNAtfyevesilK 953
Cdd:pfam06008 155 DL----------LSRIQTWFQSPQEENKALANALRDSlAEYEAKLsdlreLLREAAAKTRDANRLNLANQ---------A 215
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 966923133 954 NLREFdlqvdNRKAEAEEAMKRLsyISQKVSDASDKTQQAERALGSA 1000
Cdd:pfam06008 216 NLREF-----QRKKEEVSEQKNQ--LEETLKTARDSLDAANLLLQEI 255
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
999-1180 |
1.51e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.67 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 999 SAAADAQRAKNGAREALKISSEIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVI 1078
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1079 TEAQRVDTRAKNTGV-----TIQDTLNTLDGLLYLMDQPVSIDEEgLILLEQKLSRAKNQINSQLRpmmsELEERARRQR 1153
Cdd:COG3883 93 RALYRSGGSVSYLDVllgseSFSDFLDRLSALSKIADADADLLEE-LKADKAELEAKKAELEAKLA----ELEALKAELE 167
|
170 180
....*....|....*....|....*..
gi 966923133 1154 GHLHLLETSIDGILADVKNLENIRDNL 1180
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAA 194
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
613-1069 |
1.93e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 613 YNQVKIQMDQFMQQLQRMEALISKAQGgdgavLDTELEgRMQQAEQALRDILRDAQISEGAsRSLGLQLAKVRSQENSYR 692
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEE-----LEEELE-ELEAELEELREELEKLEKLLQL-LPLYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 693 SRLDDLKMTVERVRALGSQYQNQVRDthrlITQMQLSLAESEASLGNTNipasdhyvgPNGFKSLAQEATRLAESHVESA 772
Cdd:COG4717 146 ERLEELEERLEELRELEEELEELEAE----LAELQEELEELLEQLSLAT---------EEELQDLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 773 SNMEQLTKETEDYSKQalslvhkalregggsgsgsldgavvqgvVEKLEKTKsLAQQLTREATQAETeadrsyqhSLRLL 852
Cdd:COG4717 213 EELEEAQEELEELEEE----------------------------LEQLENEL-EAAALEERLKEARL--------LLLIA 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 853 DSVSQLQGVNDQTFQVEEakRIKQKADSLSSLVTRHMDEFKRAQKNLGDWKEETQQLLQNGKNGREKSDQLLSR----AN 928
Cdd:COG4717 256 AALLALLGLGGSLLSLIL--TIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAlglpPD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 929 LAKSRAQEALSMGNATFYEVESILKNLREFDLQV---------DNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGS 999
Cdd:COG4717 334 LSPEELLELLDRIEELQELLREAEELEEELQLEEleqeiaallAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEE 413
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923133 1000 AAADAQRAKNGAREAlkissEIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVE--GELERKELEFDT 1069
Cdd:COG4717 414 LLGELEELLEALDEE-----ELEEELEELEEELEELEEELEELREELAELEAELEQLEedGELAELLQELEE 480
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
573-604 |
2.18e-05 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 42.73 E-value: 2.18e-05
10 20 30
....*....|....*....|....*....|...
gi 966923133 573 CNCNPMGSEPVEC-RSDGTCVCKPGFGGPNCEH 604
Cdd:pfam00053 1 CDCNPHGSLSDTCdPETGQCLCKPGVTGRHCDR 33
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
657-1026 |
2.44e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.91 E-value: 2.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 657 EQALRDIlrdAQISEGASRsLGLQLAKVRSQensyRSRLDDLKMTVERVRALGSQYQ--------NQVRDTHRLITQMQL 728
Cdd:TIGR02169 173 EKALEEL---EEVEENIER-LDLIIDEKRQQ----LERLRREREKAERYQALLKEKReyegyellKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 729 SLAESEASLgntnipasdhyvgpNGFKSLAQEatrLAESHVESASNMEQLTKETEDYSKQALSLVHKALREgggsgsgsl 808
Cdd:TIGR02169 245 QLASLEEEL--------------EKLTEEISE---LEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE--------- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 809 dgavVQGVVEKLEKTKSLAQQLTR--EATQAETEADRSYQHSlRLLDSVSQLQGVNDQTFQVEEakRIKQKADSLSSLVT 886
Cdd:TIGR02169 299 ----LEAEIASLERSIAEKERELEdaEERLAKLEAEIDKLLA-EIEELEREIEEERKRRDKLTE--EYAELKEELEDLRA 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 887 R----------HMDEFKRAQKNLGDWKEETQQLLQNGKNGREKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLR 956
Cdd:TIGR02169 372 EleevdkefaeTRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK 451
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 957 EFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAREALKISSEIEQEIG 1026
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
893-1178 |
2.71e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 47.97 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 893 KRAQKNLGDWKEETQQLLQNGKNGREKSDQLLSRANLAKSRAQEalsmgnatfyEVESILKNLREFDLQVDNRKAEAEEA 972
Cdd:COG4372 9 GKARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLRE----------ELEQAREELEQLEEELEQARSELEQL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 973 MKRLSYISQKVSDASDKTQQAERALGSAAADAQRAkngaREALKissEIEQEIGSLNLEANVTADGALAMEKGLASLKSE 1052
Cdd:COG4372 79 EEELEELNEQLQAAQAELAQAQEELESLQEEAEEL----QEELE---ELQKERQDLEQQRKQLEAQIAELQSEIAEREEE 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1053 MREVEGELERKELEFDTNMDAVQMVITEA--QRVDTRAKNTGVTIQDTLNTLDGLLYLMDQPVSIDEEGLILLEQKLSRA 1130
Cdd:COG4372 152 LKELEEQLESLQEELAALEQELQALSEAEaeQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKL 231
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 966923133 1131 KNQINSQLRPMMSELEERARRQRGHLHLLETSIDGILADVKNLENIRD 1178
Cdd:COG4372 232 GLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELE 279
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
657-1011 |
2.97e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 48.03 E-value: 2.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 657 EQALRDI--LRDAQISEGASRSLGL--QLAKVRSQENSYRSRLDDLKMTVERVRALgSQYQNQvrdTHRLITQMQLSLAE 732
Cdd:COG5185 256 EKLVEQNtdLRLEKLGENAESSKRLneNANNLIKQFENTKEKIAEYTKSIDIKKAT-ESLEEQ---LAAAEAEQELEESK 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 733 SEASLGNTNIPASDHyvgpNGFKSL--AQEATRLAESHVESASNMEQLTKETEDYSKQAlslvhKALREGGGSGSGSLDG 810
Cdd:COG5185 332 RETETGIQNLTAEIE----QGQESLteNLEAIKEEIENIVGEVELSKSSEELDSFKDTI-----ESTKESLDEIPQNQRG 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 811 aVVQGVVEKLEKTKSLAQQLTREATQAETEADRSYQHSLRLLDSVSQLQGVNDQTFQVEEAKRIKQKADSLSSlvtrhmd 890
Cdd:COG5185 403 -YAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINR------- 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 891 efkRAQKNLGDWKEETQQLLQNGKNGREKSDQLlsRANLAKSraqealsmgnatfyeVESILKNLREFDLQVDNRKAEAE 970
Cdd:COG5185 475 ---SVRSKKEDLNEELTQIESRVSTLKATLEKL--RAKLERQ---------------LEGVRSKLDQVAESLKDFMRARG 534
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 966923133 971 EAMKRLsyISQKVSDASDKTQQAERALGSAAADAQRAKNGA 1011
Cdd:COG5185 535 YAHILA--LENLIPASELIQASNAKTDGQAANLRTAVIDEL 573
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
573-604 |
3.99e-05 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 41.91 E-value: 3.99e-05
10 20 30
....*....|....*....|....*....|...
gi 966923133 573 CNCNPMGSEPVECRSD-GTCVCKPGFGGPNCEH 604
Cdd:smart00180 1 CDCDPGGSASGTCDPDtGQCECKPNVTGRRCDR 33
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
679-1165 |
1.04e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 679 LQLAKVRSqensYRSRLDDLKMTVERVRALGSQYQNQVR---------DTHRLITQMQLSLAESEASLgntnipasDHYv 749
Cdd:PRK02224 159 LQLGKLEE----YRERASDARLGVERVLSDQRGSLDQLKaqieekeekDLHERLNGLESELAELDEEI--------ERY- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 750 gpNGFKSLAQE----ATRLAESHVESASNMEQLTKETEDYS---------KQALSLVHKALREGGGSGSGSLDGAVVQGV 816
Cdd:PRK02224 226 --EEQREQAREtrdeADEVLEEHEERREELETLEAEIEDLRetiaetereREELAEEVRDLRERLEELEEERDDLLAEAG 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 817 VEKLEKTKSLAQQLTREATQAETEaDRSYQHSLRLLDSVSQLQGVNDQTFQVEE-AKRIKQKADSLSSLVT---RHMDEF 892
Cdd:PRK02224 304 LDDADAEAVEARREELEDRDEELR-DRLEECRVAAQAHNEEAESLREDADDLEErAEELREEAAELESELEearEAVEDR 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 893 KRAQKNLGDWKEETQQLLQNGKNGREKSDQLLS--RANLAKSRAQEAlsmgnatfyEVESILKNLRefdlqvdNRKAEAE 970
Cdd:PRK02224 383 REEIEELEEEIEELRERFGDAPVDLGNAEDFLEelREERDELREREA---------ELEATLRTAR-------ERVEEAE 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 971 E--AMKRLSYISQKVSDAS-------DKTQQAERALGSAAADAQRAKNGAR-EALKISSEIEQEIGSL-----NLEANVT 1035
Cdd:PRK02224 447 AllEAGKCPECGQPVEGSPhvetieeDRERVEELEAELEDLEEEVEEVEERlERAEDLVEAEDRIERLeerreDLEELIA 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1036 --ADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKntgvTIQDTLNTLDGLLYLMDQPV 1113
Cdd:PRK02224 527 erRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA----ELKERIESLERIRTLLAAIA 602
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 966923133 1114 SIDEEGLILLEQKlsRAKNQINSQLRPMMSELEERaRRQrghlhlLETSIDG 1165
Cdd:PRK02224 603 DAEDEIERLREKR--EALAELNDERRERLAEKRER-KRE------LEAEFDE 645
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
819-1180 |
1.83e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 819 KLEKTKSLAQQltrEATQAETEADRSYQHSLRLLDS----VSQLQgvnDQTFQVEEA-KRIKQKADSLSSLVTRHMD--- 890
Cdd:TIGR04523 229 QLKDNIEKKQQ---EINEKTTEISNTQTQLNQLKDEqnkiKKQLS---EKQKELEQNnKKIKELEKQLNQLKSEISDlnn 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 891 --------EFKRAQKNLGDWKEETQ-QLLQNGKNGREKSDQLlsrANLAKSRaqealsmgNATFYEVESILKNLREFDLQ 961
Cdd:TIGR04523 303 qkeqdwnkELKSELKNQEKKLEEIQnQISQNNKIISQLNEQI---SQLKKEL--------TNSESENSEKQRELEEKQNE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 962 VDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERalgSAAADAQRAKNGAREALKISSEIE-----------------QE 1024
Cdd:TIGR04523 372 IEKLKKENQSYKQEIKNLESQINDLESKIQNQEK---LNQQKDEQIKKLQQEKELLEKEIErlketiiknnseikdltNQ 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1025 IGSLNLEANVTADGALAMEKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKNtgvtiqdtlntldg 1104
Cdd:TIGR04523 449 DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD-------------- 514
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923133 1105 llyLMDQpvsIDEegLILLEQKLSRAKNQINSQLRPMMSELEEraRRQRGHLHLLETSIDGILADVKNLENIRDNL 1180
Cdd:TIGR04523 515 ---LTKK---ISS--LKEKIEKLESEKKEKESKISDLEDELNK--DDFELKKENLEKEIDEKNKEIEELKQTQKSL 580
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
647-1154 |
2.10e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.55 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 647 TELEGRMQQAEQALRDILRDAQISEGASRSLGLQLAKVRSQENSYRSRL----DDLKMTVERVRALGSQyQNQVRDTHRl 722
Cdd:pfam01576 190 SDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLakkeEELQAALARLEEETAQ-KNNALKKIR- 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 723 itQMQLSLAESEASLgntnipasdhyvgpngfkslaqEATRLAESHVESA-----SNMEQLTKETEDY-----------S 786
Cdd:pfam01576 268 --ELEAQISELQEDL----------------------ESERAARNKAEKQrrdlgEELEALKTELEDTldttaaqqelrS 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 787 K--QALSLVHKALREGGGSGSGSLD------GAVVQGVVEKLEKTKSLAQQLtrEATQAETEADRS-YQHSLRLLDSV-- 855
Cdd:pfam01576 324 KreQEVTELKKALEEETRSHEAQLQemrqkhTQALEELTEQLEQAKRNKANL--EKAKQALESENAeLQAELRTLQQAkq 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 856 ----------SQLQGVNDQTFQVEEAK--------RIKQKADSLSSLVTRHMDEFKRAQKNLGD-----------WKEET 906
Cdd:pfam01576 402 dsehkrkkleGQLQELQARLSESERQRaelaeklsKLQSELESVSSLLNEAEGKNIKLSKDVSSlesqlqdtqelLQEET 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 907 QQLLQNGKNGREKSDQllsRANL---------AKSRAQEALSMGNATFYE-----------VESILKNLREFDLQVDN-- 964
Cdd:pfam01576 482 RQKLNLSTRLRQLEDE---RNSLqeqleeeeeAKRNVERQLSTLQAQLSDmkkkleedagtLEALEEGKKRLQRELEAlt 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 965 -RKAEAEEAMKRL----SYISQKVSDAS--------------------DKTQQAERALGSAAADAQ-RAKNGARE----A 1014
Cdd:pfam01576 559 qQLEEKAAAYDKLektkNRLQQELDDLLvdldhqrqlvsnlekkqkkfDQMLAEEKAISARYAEERdRAEAEAREketrA 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1015 LKISSEIEQEIGSLN------------LEANVTADGAL------------AMEKGLASLKSEMREVEGELERKE---LEF 1067
Cdd:pfam01576 639 LSLARALEEALEAKEelertnkqlraeMEDLVSSKDDVgknvhelerskrALEQQVEEMKTQLEELEDELQATEdakLRL 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1068 DTNMDAVQmviTEAQRvDTRAKntgvtiqdtlntldgllylmdqpvsiDEEGlillEQKlsraKNQINSQLRPMMSELEE 1147
Cdd:pfam01576 719 EVNMQALK---AQFER-DLQAR--------------------------DEQG----EEK----RRQLVKQVRELEAELED 760
|
....*..
gi 966923133 1148 RaRRQRG 1154
Cdd:pfam01576 761 E-RKQRA 766
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
818-1027 |
2.99e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 818 EKLEKTKSLAQQLTREATQAETEAD----------RSYQHSLRLLDSVSQLQGVND-QTFqVEEAKRIKQKADSLSSLvt 886
Cdd:COG3883 58 AELEALQAEIDKLQAEIAEAEAEIEerreelgeraRALYRSGGSVSYLDVLLGSESfSDF-LDRLSALSKIADADADL-- 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 887 rhMDEFKRAQKNLGDWKEETQQLLQngkngreKSDQLLSRANLAKSRAQEALSmgnatfyEVESILKNLREFDLQVDNRK 966
Cdd:COG3883 135 --LEELKADKAELEAKKAELEAKLA-------ELEALKAELEAAKAELEAQQA-------EQEALLAQLSAEEAAAEAQL 198
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966923133 967 AEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAREALKISSEIEQEIGS 1027
Cdd:COG3883 199 AELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAA 259
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
980-1153 |
3.55e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 980 SQKVSDASDKTQQAERALGSAAADAQRAKNGAREALKISSEIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVEGE 1059
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1060 LERKElefdtnmDAVQMVITEAQRVDTRAKNTGVTIQDTLNTLDGLLYLMDQPVSIDE---EGLILLEQKLSRAKNQINS 1136
Cdd:COG4942 99 LEAQK-------EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARReqaEELRADLAELAALRAELEA 171
|
170
....*....|....*..
gi 966923133 1137 QLRPMMSELEERARRQR 1153
Cdd:COG4942 172 ERAELEALLAELEEERA 188
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
816-1083 |
4.65e-04 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 44.25 E-value: 4.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 816 VVEKLEKTKSLAQQLTREATQAETEADRSYQHS----LRlldsVSQL-QGVNDqtfqveEAkRIKQKADsLSSLVTRHmd 890
Cdd:pfam05701 68 VLEELESTKRLIEELKLNLERAQTEEAQAKQDSelakLR----VEEMeQGIAD------EA-SVAAKAQ-LEVAKARH-- 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 891 efKRAQKNLGDWKEETQQLlqngkngREKSDQLLSRANLAKSRAQEALSMGNatfyEVEsilKNLREFDLQVDNRKAEAE 970
Cdd:pfam05701 134 --AAAVAELKSVKEELESL-------RKEYASLVSERDIAIKRAEEAVSASK----EIE---KTVEELTIELIATKESLE 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 971 EAmkRLSYIsqkvsDASdktqqaERALGSAAADAQRAKNGAREaLKissEIEQEIGSLN--------LEANVTADGALam 1042
Cdd:pfam05701 198 SA--HAAHL-----EAE------EHRIGAALAREQDKLNWEKE-LK---QAEEELQRLNqqllsakdLKSKLETASAL-- 258
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 966923133 1043 ekgLASLKSE----MREVEGELERKELEFDTNMDAVQMVITEAQR 1083
Cdd:pfam05701 259 ---LLDLKAElaayMESKLKEEADGEGNEKKTSTSIQAALASAKK 300
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
818-1066 |
4.75e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 43.75 E-value: 4.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 818 EKLEKTKSLAQQLtreatqAETEADRSyqhslRLLDSVSQLQGVNDQTFqvEEAKRIKQKADSLSSLvtrhMDEFKRAQK 897
Cdd:COG1340 47 ELNAQVKELREEA------QELREKRD-----ELNEKVKELKEERDELN--EKLNELREELDELRKE----LAELNKAGG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 898 NLGDWKEETQQL---LQNGKNGREKSDQLLSRANLAKSRAQEAlsmgnatfyevesilKNLREFDLQVDNRKAEAEEAMK 974
Cdd:COG1340 110 SIDKLRKEIERLewrQQTEVLSPEEEKELVEKIKELEKELEKA---------------KKALEKNEKLKELRAELKELRK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 975 RLSYISQKVSDASDKTQQAERALGSA--AADAQRAKngAREALKISSEIEQEIGSLNLEANVTADGALAMEKGLASLKSE 1052
Cdd:COG1340 175 EAEEIHKKIKELAEEAQELHEEMIELykEADELRKE--ADELHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKK 252
|
250
....*....|....
gi 966923133 1053 MREVEGELERKELE 1066
Cdd:COG1340 253 QRALKREKEKEELE 266
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
650-1088 |
5.22e-04 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 44.43 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 650 EGRMQQAEQALRDILRDAQ--ISEgASRSLGLQLAKVRSQeNSYRSRldDLKMTVERVralgsqYQNQVRDTHRLITQMQ 727
Cdd:NF041483 264 EQRMQEAEEALREARAEAEkvVAE-AKEAAAKQLASAESA-NEQRTR--TAKEEIARL------VGEATKEAEALKAEAE 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 728 LSLAESEAslgntnipasdhyvgpngfkslaqEATRLAESHVESASnmeqlTKETEDYSKQalslVHKALREGGgsgsgs 807
Cdd:NF041483 334 QALADARA------------------------EAEKLVAEAAEKAR-----TVAAEDTAAQ----LAKAARTAE------ 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 808 ldgavvqgvvEKLEKTKSLAQQLTREAT--------QAETEADRsyqhsLR--LLDSVSQLQG-VNDQTFQV-------- 868
Cdd:NF041483 375 ----------EVLTKASEDAKATTRAAAeeaerirrEAEAEADR-----LRgeAADQAEQLKGaAKDDTKEYraktvelq 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 869 EEAKRIKQKADSLSSlvtrhmDEFKRAQKNLGDW-KEETQQLLQNGKNGRE-------KSDQLLSRAN------------ 928
Cdd:NF041483 440 EEARRLRGEAEQLRA------EAVAEGERIRGEArREAVQQIEEAARTAEElltkakaDADELRSTATaeservrteaie 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 929 ------------LAKSRAQ------EALSMGNATFYEVESILKNLR-EFDLQVDNRKAEAEEAMKRLSyisqkvSDASDK 989
Cdd:NF041483 514 rattlrrqaeetLERTRAEaerlraEAEEQAEEVRAAAERAARELReETERAIAARQAEAAEELTRLH------TEAEER 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 990 TQQAERALGSAAADAQRA-KNGAREALKISSEI-----------EQEIGSLNLEANVTADGALAMEKGLA-SLKSemrEV 1056
Cdd:NF041483 588 LTAAEEALADARAEAERIrREAAEETERLRTEAaerirtlqaqaEQEAERLRTEAAADASAARAEGENVAvRLRS---EA 664
|
490 500 510
....*....|....*....|....*....|...
gi 966923133 1057 EGELERKELEFDTNMDAVQM-VITEAQRVDTRA 1088
Cdd:NF041483 665 AAEAERLKSEAQESADRVRAeAAAAAERVGTEA 697
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
619-1064 |
5.69e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 619 QMDQFMQQLQRMEAlISKAQGGDGAVLDTELEGRMQQAEQALRdiLRDAQISEGAsrslglQLAKVRSQENSYRSRLDDL 698
Cdd:TIGR00606 180 SATRYIKALETLRQ-VRQTQGQKVQEHQMELKYLKQYKEKACE--IRDQITSKEA------QLESSREIVKSYENELDPL 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 699 KmtvERVRALgsqyQNQVRDTHRLITQMQlSLAESEASLGNTNIPASDHYVGPngFKSLAQEATRLAESHVESASNMEQ- 777
Cdd:TIGR00606 251 K---NRLKEI----EHNLSKIMKLDNEIK-ALKSRKKQMEKDNSELELKMEKV--FQGTDEQLNDLYHNHQRTVREKERe 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 778 ---LTKETEDYSKQALSLVHKALREGGGSGSGSLDGAVVQgvveklekTKSLAQQLTREATQAETEADrSYQHslrllDS 854
Cdd:TIGR00606 321 lvdCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQ--------EHIRARDSLIQSLATRLELD-GFER-----GP 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 855 VSQLQGVNDQTFQVE----EAKRIKQKADSLSS---LVTRHMDEFKRAQKNLGDW-----------KEETQQLLQNGKNG 916
Cdd:TIGR00606 387 FSERQIKNFHTLVIErqedEAKTAAQLCADLQSkerLKQEQADEIRDEKKGLGRTielkkeilekkQEELKFVIKELQQL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 917 REKSDQLLSRAN-LAKSRAQEALSMGNATFYEVESILKNLREFDLQVDNRKAEAEEAMkrlsyiSQKVSDASDKTQQAER 995
Cdd:TIGR00606 467 EGSSDRILELDQeLRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEM------EQLNHHTTTRTQMEML 540
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966923133 996 ALGSAAADAQRAKNGAREALKISS---------EIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVEGELERKE 1064
Cdd:TIGR00606 541 TKDKMDKDEQIRKIKSRHSDELTSllgyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKE 618
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
28-86 |
5.88e-04 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 38.87 E-value: 5.88e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923133 28 CDCNG---KSRQCifdqelYRQTGngfRCLnCNDNTDGIHCERCKDGFYRHRerdRCLPCNC 86
Cdd:pfam00053 1 CDCNPhgsLSDTC------DPETG---QCL-CKPGVTGRHCDRCKPGYYGLP---SDPPQGC 49
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
947-1089 |
6.93e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 6.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 947 EVESILKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKN------GAREALKISSE 1020
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEqlgnvrNNKEYEALQKE 97
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966923133 1021 IEQ---EIGSLN---LEANVTADgalAMEKGLASLKSEMREVEGELERKELEFDTNMDAvqmviTEAQRVDTRAK 1089
Cdd:COG1579 98 IESlkrRISDLEdeiLELMERIE---ELEEELAELEAELAELEAELEEKKAELDEELAE-----LEAELEELEAE 164
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
816-1028 |
8.45e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 8.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 816 VVEKLEKTKSLAQ--QLTREATQAETEADRsyqhsLRLLDSVSQLQgvndqtFQVEEAKRIKQKADSLSSLVTRHMDEFK 893
Cdd:COG4913 244 LEDAREQIELLEPirELAERYAAARERLAE-----LEYLRAALRLW------FAQRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 894 RAQKNLGDWKEE----TQQLLQNGknGREKSD--QLLSRANLAKSRAQEALsmgnatfyevESILKNLREFDLQVDNRKA 967
Cdd:COG4913 313 RLEARLDALREEldelEAQIRGNG--GDRLEQleREIERLERELEERERRR----------ARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966923133 968 EAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNgarealkissEIEQEIGSL 1028
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELR----------ELEAEIASL 431
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
648-843 |
1.28e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 648 ELEGRMQQAEQALRDILRDAQISEGASRSLGL--QLAKVRSQENSYRSRLDDLKMTVERVRALGSQYQNQVRD--THRLI 723
Cdd:COG3206 186 ELRKELEEAEAALEEFRQKNGLVDLSEEAKLLlqQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEllQSPVI 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 724 TQMQLSLAESEAslgntnipasdhyvgpngfkSLAQEATRLAESHVEsasnMEQLTKETEDYSKQALSLVHKALREGGGs 803
Cdd:COG3206 266 QQLRAQLAELEA--------------------ELAELSARYTPNHPD----VIALRAQIAALRAQLQQEAQRILASLEA- 320
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 966923133 804 gsgslDGAVVQGVVEKLEKTKSLAQQLTREATQAETEADR 843
Cdd:COG3206 321 -----ELEALQAREASLQAQLAQLEARLAELPELEAELRR 355
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
904-1068 |
2.12e-03 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 41.89 E-value: 2.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 904 EETQQLLQNGKNGREKSDQLLSRANLAKSRAQEALSMGNATfyEVESILKNLREFDLQVDNRKAEAEEAMKRLSYISQKV 983
Cdd:PRK07735 2 DPEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENR--EKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 984 SDASDKTQQAERALGSAAADAQRAKngAREALKISSEIEQEIGSLNLEANVTADGALAMEKGlASLKSEMREVEGELERK 1063
Cdd:PRK07735 80 EGTEEVTEEEKAKAKAKAAAAAKAK--AAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKA-AALAKQKREGTEEVTEE 156
|
....*
gi 966923133 1064 ELEFD 1068
Cdd:PRK07735 157 EEETD 161
|
|
| EGF_Lam |
cd00055 |
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous ... |
28-78 |
2.23e-03 |
|
Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Pssm-ID: 238012 Cd Length: 50 Bit Score: 37.33 E-value: 2.23e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 966923133 28 CDCNG---KSRQCifdqelYRQTGngfRCLnCNDNTDGIHCERCKDGFYRHRER 78
Cdd:cd00055 2 CDCNGhgsLSGQC------DPGTG---QCE-CKPNTTGRRCDRCAPGYYGLPSQ 45
|
|
| Laminin_EGF |
pfam00053 |
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six. |
484-509 |
2.31e-03 |
|
Laminin EGF domain; This family is like pfam00008 but has 8 conserved cysteines instead of six.
Pssm-ID: 395007 Cd Length: 49 Bit Score: 36.95 E-value: 2.31e-03
10 20
....*....|....*....|....*.
gi 966923133 484 CPPGVTGARCELCADGYFGDPFGEHG 509
Cdd:pfam00053 22 CKPGVTGRHCDRCKPGYYGLPSDPPQ 47
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
889-1065 |
4.95e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 41.13 E-value: 4.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 889 MDEFKR--AQKNLGDWKEETQQLLQNGKNGREKS-DQLLSR-ANLAKS----RAQEALSmgnatfyEVESILKNLR--EF 958
Cdd:pfam13779 522 LDDYMQalAEQAQQNPQDLQQPDDPNAQEMTQQDlQRMLDRiEELARSgrraEAQQMLS-------QLQQMLENLQagQP 594
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 959 DLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAREALKISSEIEQEIGSLNLEANVTADG 1038
Cdd:pfam13779 595 QQQQQQGQSEMQQAMDELGDLLREQQQLLDETFRQLQQQGGQQQGQPGQQGQQGQGQQPGQGGQQPGAQMPPQGGAEALG 674
|
170 180 190
....*....|....*....|....*....|..
gi 966923133 1039 AL-----AMEKGLASLKSEMREVEGELERKEL 1065
Cdd:pfam13779 675 DLaerqqALRRRLEELQDELKELGGKEPGQAL 706
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
850-1179 |
5.26e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 850 RLLDSV-SQLQGVNDQTFQVEEAK------RIKQKADSLSSLVTRHMDEFKRAQKNLGDWK------EETQQLLQNGKNG 916
Cdd:PRK02224 180 RVLSDQrGSLDQLKAQIEEKEEKDlherlnGLESELAELDEEIERYEEQREQARETRDEADevleehEERREELETLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 917 REKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLR-EFDL-------------QVDNRKAEAEEAmkrlsyISQK 982
Cdd:PRK02224 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLaEAGLddadaeavearreELEDRDEELRDR------LEEC 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 983 VSDASDKTQQAERALGSAAADAQRAKNGAREALKISSEIEqeigslnlEANVTADGAlamEKGLASLKSEMREVEGELER 1062
Cdd:PRK02224 334 RVAAQAHNEEAESLREDADDLEERAEELREEAAELESELE--------EAREAVEDR---REEIEELEEEIEELRERFGD 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1063 KELEFDTNMDAVQMVITEAQRVDTRAKNTGVTIQDTLNTLDGLLYLMD--------QPV-------SIDE--EGLILLEQ 1125
Cdd:PRK02224 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgQPVegsphveTIEEdrERVEELEA 482
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966923133 1126 KLSRAKNQINS---------QLRPMMSELEERARRQRGHLHLLETSIDGILADVKNLENIRDN 1179
Cdd:PRK02224 483 ELEDLEEEVEEveerleraeDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRER 545
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
891-1090 |
5.35e-03 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 39.74 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 891 EFKRAQKNLGDWKEETQQLLQNGKNGREKSdqllsranlaksraqealsmgnatfyEVESILKNLREFDLQVDNRK---- 966
Cdd:cd00176 4 QFLRDADELEAWLSEKEELLSSTDYGDDLE--------------------------SVEALLKKHEALEAELAAHEerve 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 967 ---AEAEEAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKNGAREALKISSEIEQEIGSLN-LEANVTADGALAM 1042
Cdd:cd00176 58 alnELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEeKEAALASEDLGKD 137
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 966923133 1043 EKGLASLKSEMREVEGELERKELEFDTNMDAVQMVITEAQRVDTRAKN 1090
Cdd:cd00176 138 LESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIE 185
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
825-1057 |
5.35e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 825 SLAQQLTREATQAETEADRsyQHSLRLLDSVSQLQgvNDQTFQVEEAKRIKQKADSLSSLVTRHMDEFKRAQKNLGDWKE 904
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQ--QEIAELEKELAALK--KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 905 ETQQLLQNGKNGREKSDQLLSRANLAKSRAQEALSMGNATFYEVESILKNLREFdlqVDNRKAEAEEAMKRLSYISQKVS 984
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYL---APARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923133 985 DASDKTQQAERALGSAAADAQR---AKNGAREALKissEIEQEIGSLNLEANVTADGALAMEKGLASLKSEMREVE 1057
Cdd:COG4942 168 ELEAERAELEALLAELEEERAAleaLKAERQKLLA---RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
813-1180 |
5.58e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 5.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 813 VQGVVEKLEKTKSLAQQlTREATQAETEADRSYQHSLRLLDS-VSQLQGVNDQTFQVEE--AKRIKQKADSLSSLVTRHM 889
Cdd:PRK02224 218 LDEEIERYEEQREQARE-TRDEADEVLEEHEERREELETLEAeIEDLRETIAETEREREelAEEVRDLRERLEELEEERD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 890 D-----EFKRA--------QKNLGDWKEETQQLLQ-----------NGKNGREKSDQLLSRANLAKSRAQEALSmgnatf 945
Cdd:PRK02224 297 DllaeaGLDDAdaeavearREELEDRDEELRDRLEecrvaaqahneEAESLREDADDLEERAEELREEAAELES------ 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 946 yEVESILKNLREFDLQVDNRKAEAEEAMKRLSYISQKVSDASDKTQ--QAERA-----LGSAAADAQRAKNGAREALKIS 1018
Cdd:PRK02224 371 -ELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEelREERDelrerEAELEATLRTARERVEEAEALL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1019 S-----EIEQEI-GSLNLEANVTADGALA-MEKGLASLKSEMREVEGELERKElefdtnmDAVQmVITEAQRVDTRAKNT 1091
Cdd:PRK02224 450 EagkcpECGQPVeGSPHVETIEEDRERVEeLEAELEDLEEEVEEVEERLERAE-------DLVE-AEDRIERLEERREDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 1092 GVTIQDTLNTLDG----LLYLMDQPVSIDEEGlillEQKLSRAknqinsqlrpmmSELEERARRQRGHLHLLETSIDGIL 1167
Cdd:PRK02224 522 EELIAERRETIEEkrerAEELRERAAELEAEA----EEKREAA------------AEAEEEAEEAREEVAELNSKLAELK 585
|
410
....*....|...
gi 966923133 1168 ADVKNLENIRDNL 1180
Cdd:PRK02224 586 ERIESLERIRTLL 598
|
|
| growth_prot_Scy |
NF041483 |
polarized growth protein Scy; |
645-1091 |
7.36e-03 |
|
polarized growth protein Scy;
Pssm-ID: 469371 [Multi-domain] Cd Length: 1293 Bit Score: 40.58 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 645 LDTELEGRMQQAEQALRDILRDAQisegasrslglqlaKVRSQ--ENSYRSRLDdlkmTVERVRALGSQYQnqvRDTHRL 722
Cdd:NF041483 580 LHTEAEERLTAAEEALADARAEAE--------------RIRREaaEETERLRTE----AAERIRTLQAQAE---QEAERL 638
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 723 ITQMQLSLAESEASLGNTNIP-ASDHYVGPNGFKSLAQE-ATRLaesHVESASNMEQLTKEtedySKQALSLVHKALREG 800
Cdd:NF041483 639 RTEAAADASAARAEGENVAVRlRSEAAAEAERLKSEAQEsADRV---RAEAAAAAERVGTE----AAEALAAAQEEAARR 711
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 801 GGSGSGSLDGAVVQGVVE-----------------KLEKTKSLAQQLTREATQAETE-ADRSYQHSLRLLDSVSQLQgvn 862
Cdd:NF041483 712 RREAEETLGSARAEADQErerareqseellasarkRVEEAQAEAQRLVEEADRRATElVSAAEQTAQQVRDSVAGLQ--- 788
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 863 dqtfqvEEAkriKQKADSLSSlVTRHMDEFKRAQKnlgdwKEETQQLLQNGKNGREKSDQllsRANLAKSRAQEalsmgn 942
Cdd:NF041483 789 ------EQA---EEEIAGLRS-AAEHAAERTRTEA-----QEEADRVRSDAYAERERASE---DANRLRREAQE------ 844
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 943 atfyEVESIlKNLREfdLQVDNRKAEAEEAMKRLSYISQKV-SDASDKTQQAERalgsaaaDAQRAKNGARE-ALKISSE 1020
Cdd:NF041483 845 ----ETEAA-KALAE--RTVSEAIAEAERLRSDASEYAQRVrTEASDTLASAEQ-------DAARTRADAREdANRIRSD 910
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966923133 1021 IEQEIGSLNLEANVTADGALAMEKGLAslksEMREVEGELERKELEFDTNMDAVQMV---ITEAQRVDTRAKNT 1091
Cdd:NF041483 911 AAAQADRLIGEATSEAERLTAEARAEA----ERLRDEARAEAERVRADAAAQAEQLIaeaTGEAERLRAEAAET 980
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
895-1062 |
7.65e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 39.42 E-value: 7.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 895 AQKNLGDWKEETQQLLQNGKNGREKSDQLLSRANLAKSRAQEALSMGNatfyevESI----LKNLREFDLQVDNRKAEAE 970
Cdd:COG1842 35 MEEDLVEARQALAQVIANQKRLERQLEELEAEAEKWEEKARLALEKGR------EDLareaLERKAELEAQAEALEAQLA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 971 EAMKRLSYISQKVSDASDKTQQAERALGSAAADAQRAKngAREALK-----ISSE--------IEQEIgsLNLEANVTAD 1037
Cdd:COG1842 109 QLEEQVEKLKEALRQLESKLEELKAKKDTLKARAKAAK--AQEKVNealsgIDSDdatsalerMEEKI--EEMEARAEAA 184
|
170 180
....*....|....*....|....*....
gi 966923133 1038 GALAMEKGL----ASLKSEMrEVEGELER 1062
Cdd:COG1842 185 AELAAGDSLddelAELEADS-EVEDELAA 212
|
|
| AtpF |
COG0711 |
FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ... |
917-1016 |
9.11e-03 |
|
FoF1-type ATP synthase, membrane subunit b or b' [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit b or b' is part of the Pathway/BioSystem: FoF1-type ATP synthase
Pssm-ID: 440475 [Multi-domain] Cd Length: 152 Bit Score: 38.23 E-value: 9.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923133 917 REKSDQLLSRANLAKSRAQEALSmgnatfyEVESILKNLREfdlQVDNRKAEAEEAMKRLsyISQKVSDAsdkTQQAERA 996
Cdd:COG0711 33 QEKIADGLAEAERAKEEAEAALA-------EYEEKLAEARA---EAAEIIAEARKEAEAI--AEEAKAEA---EAEAERI 97
|
90 100
....*....|....*....|
gi 966923133 997 LGSAAADAQRAKNGAREALK 1016
Cdd:COG0711 98 IAQAEAEIEQERAKALAELR 117
|
|
| EGF_Lam |
smart00180 |
Laminin-type epidermal growth factor-like domai; |
28-75 |
9.90e-03 |
|
Laminin-type epidermal growth factor-like domai;
Pssm-ID: 214543 Cd Length: 46 Bit Score: 35.36 E-value: 9.90e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 966923133 28 CDCNG---KSRQCIFDqelyrqtgnGFRCLnCNDNTDGIHCERCKDGFYRH 75
Cdd:smart00180 1 CDCDPggsASGTCDPD---------TGQCE-CKPNVTGRRCDRCAPGYYGD 41
|
|
| |
