|
Name |
Accession |
Description |
Interval |
E-value |
| TPR_MLP1_2 |
pfam07926 |
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ... |
1116-1242 |
2.67e-27 |
|
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.
Pssm-ID: 462316 [Multi-domain] Cd Length: 129 Bit Score: 108.88 E-value: 2.67e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1116 LSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQK 1195
Cdd:pfam07926 3 LSSLQSEIKRLKEEAADAEAQLQKLQEDLEKQAEIAREAQQNYERELVLHAEDIKALQALREELNELKAEIAELKAEAES 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 966923050 1196 AESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNKLLHDQIEKL 1242
Cdd:pfam07926 83 AKAELEESEESWEEQKKELEKELSELEKRIEDLNEQNKLLHDQLESL 129
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
849-1695 |
2.89e-23 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 108.61 E-value: 2.89e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 849 KLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQRL---SSQIEKLEHEIS 925
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELyalANEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 926 HLKKKLGNEVEQRhtltRNLDVQLLDTKRQLD-TETNLHLNTKELFKnAQKEIATLKQHLSNMEVQLASQSSQRTGKGQP 1004
Cdd:TIGR02168 306 ILRERLANLERQL----EELEAQLEELESKLDeLAEELAELEEKLEE-LKEELESLEAELEELEAELEELESRLEELEEQ 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1005 SN--KEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLnkEKQVTEEVRKNIEVRLKESAEFQTQLEK 1082
Cdd:TIGR02168 381 LEtlRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELER 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1083 KLMEVEKEKQELqDDKRRAIESMEQQLSELKKTLSSVQNEVQEA--LQRASTALSNEQQARRDCQEQAKIAVEAQNKYER 1160
Cdd:TIGR02168 459 LEEALEELREEL-EEAEQALDAAERELAQLQARLDSLERLQENLegFSEGVKALLKNQSGLSGILGVLSELISVDEGYEA 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1161 EL------MLHAADVEALQAAKEQVS---KMASVRQHLEETTQKAESQLleckaswEERERMLKDEVSKCVCRCEDLEKQ 1231
Cdd:TIGR02168 538 AIeaalggRLQAVVVENLNAAKKAIAflkQNELGRVTFLPLDSIKGTEI-------QGNDREILKNIEGFLGVAKDLVKF 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1232 NKLLHDQIEKLSDKVVasVKEGVQGPLNVslseegksQEQILEILRFIRREKEIAETRFEVAqveslryrqrvellerel 1311
Cdd:TIGR02168 611 DPKLRKALSYLLGGVL--VVDDLDNALEL--------AKKLRPGYRIVTLDGDLVRPGGVIT------------------ 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1312 qelqdslnaeREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDIlplqeanAELS 1391
Cdd:TIGR02168 663 ----------GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL-------EELS 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1392 EKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDtEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNL 1471
Cdd:TIGR02168 726 RQISALRKDLARLEAEVEQLEERIAQLSKELTELE-AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1472 IQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEqhvLVQE 1551
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA---LLNE 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1552 MQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQD---LQDRTTQEEQLRQQ------- 1621
Cdd:TIGR02168 882 RASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRidnLQERLSEEYSLTLEeaealen 961
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 1622 -ITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELdvriTALKSQYEGRISRLERELRE 1695
Cdd:TIGR02168 962 kIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDL----TEAKETLEEAIEEIDREARE 1032
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
861-1725 |
4.33e-22 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 104.76 E-value: 4.33e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 861 KKEKEMLKLSEVRLSQQRESLLAEQRGQNLlltnlQTIQGilERSETETKQRLSSQIEKLEHEIsHLKKKLGNEvEQRHT 940
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQL-----ERLRR--EREKAERYQALLKEKREYEGYE-LLKEKEALE-RQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 941 LTRNLDV---QLLDTKRQLD--------TETNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASQSSQrtgkgQPSNKED 1009
Cdd:TIGR02169 242 IERQLASleeELEKLTEEISelekrleeIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS-----IAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1010 VDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVRKNIEvrlKESAEFQTqLEKKLMEVEK 1089
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE---EVDKEFAE-TRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1090 EKQELQDdKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKiaveaqnKYERELMLHAADV 1169
Cdd:TIGR02169 393 KLEKLKR-EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK-------KQEWKLEQLAADL 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1170 EAlqaAKEQVSKMASVRQHLEETTQKAESQLLECKAS---WEERERMLKDEVskcvcrcEDLEKQNKLLHDQIEKLsdkv 1246
Cdd:TIGR02169 465 SK---YEQELYDLKEEYDRVEKELSKLQRELAEAEAQaraSEERVRGGRAVE-------EVLKASIQGVHGTVAQL---- 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1247 vASVKEGVQGPL---------NVSLSEEGKSQEQIleilRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDS 1317
Cdd:TIGR02169 531 -GSVGERYATAIevaagnrlnNVVVEDDAVAKEAI----ELLKRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1318 LNAEReKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQD--LQQMQAKVRKLELDILPLQEANAELSEKSG 1395
Cdd:TIGR02169 606 VEFDP-KYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSgaMTGGSRAPRGGILFSRSEPAELQRLRERLE 684
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1396 MLQAEKKLLEEDVKRWKARnqhlvsqqkdpdTEEYRKLLSEKEvhtKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSL 1475
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENR------------LDELSQELSDAS---RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1476 KEDLNKVRTEKETIQKDLD---AKIIDIQEKVKTI------TQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQH 1546
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEeleEDLHKLEEALNDLearlshSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1547 VLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKE 1626
Cdd:TIGR02169 830 YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELE 909
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1627 EKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRN---------GALDQQKDELDVRITALKS-------QYEGRISRLE 1690
Cdd:TIGR02169 910 AQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEeipeeelslEDVQAELQRVEEEIRALEPvnmlaiqEYEEVLKRLD 989
|
890 900 910
....*....|....*....|....*....|....*
gi 966923050 1691 rELREHQERHLEQRDEPQEPSNKVPEQQRQITLKT 1725
Cdd:TIGR02169 990 -ELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
303-1142 |
2.39e-19 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 95.89 E-value: 2.39e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 303 ENKKEEVSRLEEqmnglktSNEHLQKhVEDLLTKLKEAK---EQQASMEEKFHnELNAHIK------LSNLYKSAADDSE 373
Cdd:TIGR02168 172 ERRKETERKLER-------TRENLDR-LEDILNELERQLkslERQAEKAERYK-ELKAELRelelalLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 374 AKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEqskdqmekEMLEKIGKLEKELENVNDLLSATKRKGAILSEEELAA 453
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVS--------ELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 454 MSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVK 533
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 534 LEQAMKEIQRLqedtdKANKQSSVLERDNqrmeiqikdLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHL 613
Cdd:TIGR02168 395 IASLNNEIERL-----EARLERLEDRRER---------LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 614 VSYRNIEELQQQNQRLLVALRElgetrereEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRIL 693
Cdd:TIGR02168 461 EALEELREELEEAEQALDAAER--------ELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVD 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 694 LSQTTGVAIPLhASSLDDI---------SLASTPKRPSTSQTvsTPAPVPVIESTEAIEAKAALKQLQEIFENYKKEKAE 764
Cdd:TIGR02168 533 EGYEAAIEAAL-GGRLQAVvvenlnaakKAIAFLKQNELGRV--TFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVK 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 765 -NEKIQN------------EQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQdnveGYRREITSLHERNQKLTATTQK 831
Cdd:TIGR02168 610 fDPKLRKalsyllggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITG----GSAKTNSSILERRREIEELEEK 685
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 832 QEQiintMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEqrgqnllltnlqtiqgilersetetKQ 911
Cdd:TIGR02168 686 IEE----LEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD-------------------------LA 736
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 912 RLSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNLhlntKELFKNAQKEIATLKQHLS--NMEV 989
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL----EAQIEQLKEELKALREALDelRAEL 812
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 990 QLASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLN---KEKQVTEEVRKNI 1066
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEallNERASLEEALALL 892
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1067 EVRLKESAEFQTQLEKKLMEVEKEKQELQD---DKRRAIESMEQQLSELKKTLSSVQN-EVQEALQRASTALSNEQQARR 1142
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREklaQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARR 972
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1050-1716 |
7.57e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.89 E-value: 7.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1050 ESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQ---DDKRRAIESMEQQLSELKKTLSSVQNEVQEA 1126
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1127 LQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKeqvSKMASVRQHLEeTTQKAESQLLECKAS 1206
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE---SRLEELEEQLE-TLRSKVAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1207 WEERERMLKDEVskcvcrcEDLEKQNKLLHDQIEKLSDKVVASVKEGVQGplnvSLSEEGKSQEQILEILRFIRREKEIA 1286
Cdd:TIGR02168 398 LNNEIERLEARL-------ERLEDRRERLQQEIEELLKKLEEAELKELQA----ELEELEEELEELQEELERLEEALEEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1287 ETRFEVAQVESL-------RYRQRVELLERELQELQDSLNAEREKVQVtAKTMAQH-----------EELMKKTETM--- 1345
Cdd:TIGR02168 467 REELEEAEQALDaaerelaQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGIlgvlselisvdEGYEAAIEAAlgg 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1346 ---NVVMETNKMLREEKERLEQDLqqmQAKVRKLELDILPLQEANAE----LSEKSGMLQAEKKLLEEDVKRWKARN--- 1415
Cdd:TIGR02168 546 rlqAVVVENLNAAKKAIAFLKQNE---LGRVTFLPLDSIKGTEIQGNdreiLKNIEGFLGVAKDLVKFDPKLRKALSyll 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1416 -QHLVSQQKDPDTEEYRKLLSEKEVHT---------------------------KRIQQLTEEIGRLKAEIARSNASLTN 1467
Cdd:TIGR02168 623 gGVLVVDDLDNALELAKKLRPGYRIVTldgdlvrpggvitggsaktnssilerrREIEELEEKIEELEEKIAELEKALAE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1468 NQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKkigRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHV 1547
Cdd:TIGR02168 703 LRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE---ERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1548 LVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKE- 1626
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAa 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1627 --EKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALK----------SQYEGRISRLERELR 1694
Cdd:TIGR02168 860 eiEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRreleelreklAQLELRLEGLEVRID 939
|
730 740
....*....|....*....|...
gi 966923050 1695 EHQERHLEQ-RDEPQEPSNKVPE 1716
Cdd:TIGR02168 940 NLQERLSEEySLTLEEAEALENK 962
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
747-1414 |
1.55e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 83.57 E-value: 1.55e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 747 ALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLT 826
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 827 ATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQrgQNLLLTNLQTIQGILERSE 906
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEEL 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 907 TETKQRLSSQIEKLEhEISHLKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELFKNaQKEIATLKQHLSN 986
Cdd:TIGR02168 450 EELQEELERLEEALE-ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN-QSGLSGILGVLSE 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 987 -----------MEVQLASQSSQRTGKGQPSNKEDVDDL------------VSQLRQTEEQVNDL-----KERLKTSTSNV 1038
Cdd:TIGR02168 528 lisvdegyeaaIEAALGGRLQAVVVENLNAAKKAIAFLkqnelgrvtflpLDSIKGTEIQGNDReilknIEGFLGVAKDL 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1039 EQYR--------------AMVTSLEESLNKEKQVTEEVRKNIE---------VRLKESAEFQTQLekklMEVEKEKQELq 1095
Cdd:TIGR02168 608 VKFDpklrkalsyllggvLVVDDLDNALELAKKLRPGYRIVTLdgdlvrpggVITGGSAKTNSSI----LERRREIEEL- 682
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1096 ddkRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELmlhaadvEALQAA 1175
Cdd:TIGR02168 683 ---EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE-------ERIAQL 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1176 KEQVSKMASVRQHLEETTQKAESQLLECKASWEERERmlkdevskcvcRCEDLEKQNKLLHDQIEKLSDKVVAsvkegvq 1255
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA-----------QIEQLKEELKALREALDELRAELTL------- 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1256 gpLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQH 1335
Cdd:TIGR02168 815 --LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1336 EELM-KKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEA-NAELSEKSGMLQAEKKLLEEDVKRWKA 1413
Cdd:TIGR02168 893 RSELeELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARR 972
|
.
gi 966923050 1414 R 1414
Cdd:TIGR02168 973 R 973
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
743-1704 |
2.64e-15 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 82.79 E-value: 2.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 743 EAKAALKQLQEIFENYKKEKAEN--EKIQNEQLEKLQEQVTDLR------SQNTKISTQLDFASKRYEMLQDNVEGYRRE 814
Cdd:TIGR00606 167 EGKALKQKFDEIFSATRYIKALEtlRQVRQTQGQKVQEHQMELKylkqykEKACEIRDQITSKEAQLESSREIVKSYENE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 815 ITSLHERNQKLTATTQKQEQIINTMTQdlrganekLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTN 894
Cdd:TIGR00606 247 LDPLKNRLKEIEHNLSKIMKLDNEIKA--------LKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 895 LQTIQGILERSETETKQRLSSQiEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELfknaq 974
Cdd:TIGR00606 319 RELVDCQRELEKLNKERRLLNQ-EKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQI----- 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 975 KEIATLKQHLSNMEVQLASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLNK 1054
Cdd:TIGR00606 393 KNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1055 EKQVTEEVRKNI-EVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQqLSELKKTLSSVQNEVQEALQRASTA 1133
Cdd:TIGR00606 473 ILELDQELRKAErELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ-LNHHTTTRTQMEMLTKDKMDKDEQI 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1134 LSNEQQARRDCQEQAKiavEAQNKYERELMLHAADVEALQAaKEQVSKMASVRQHLEETTQKAESQLleckASWEERERM 1213
Cdd:TIGR00606 552 RKIKSRHSDELTSLLG---YFPNKKQLEDWLHSKSKEINQT-RDRLAKLNKELASLEQNKNHINNEL----ESKEEQLSS 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1214 LKDEVSKcVCRCEDLEKQNKLLHDQIEKLS-DKVVASVKEGVQGPLNVSLSEEGKSQEQILEilRFIRREKEIAETrfev 1292
Cdd:TIGR00606 624 YEDKLFD-VCGSQDEESDLERLKEEIEKSSkQRAMLAGATAVYSQFITQLTDENQSCCPVCQ--RVFQTEAELQEF---- 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1293 aqVESLRYRQRVELLERELQELQDSlNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQak 1372
Cdd:TIGR00606 697 --ISDLQSKLRLAPDKLKSTESELK-KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQE-- 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1373 vrKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIG 1452
Cdd:TIGR00606 772 --TLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNR 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1453 RLKAEiarsnasltnNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEEL----KAQQ 1528
Cdd:TIGR00606 850 KLIQD----------QQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDspleTFLE 919
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1529 DKVMETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQV-ENLQKTLSEKETEARNL-------QEQTVQLQSE 1600
Cdd:TIGR00606 920 KDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIqDGKDDYLKQKETELNTVnaqleecEKHQEKINED 999
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1601 LSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDElDVRITALKS 1680
Cdd:TIGR00606 1000 MRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRN-HVLALGRQK 1078
|
970 980
....*....|....*....|....
gi 966923050 1681 QYEGRISRLERELREHQERHLEQR 1704
Cdd:TIGR00606 1079 GYEKEIKHFKKELREPQFRDAEEK 1102
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
132-1040 |
8.67e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.87 E-value: 8.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 132 EIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKAlTEKNKELEiAQDRNIAIQSQFTRtKEELEAEKRDLIRTNERLS 211
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSLERQAEK-AERYKELK-AELRELELALLVLR-LEELREELEELQEELKEAE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 212 QELEYSTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREK 291
Cdd:TIGR02168 253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 292 gneilelkcnlENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADD 371
Cdd:TIGR02168 333 -----------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 372 SEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKigkLEKELENVNDLLSATKRKGAILSEEEL 451
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE---LQEELERLEEALEELREELEEAEQALD 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 452 AAMSPTAAAVAKIvkpgMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAkapilkrqREEYERAQKAVAS-- 529
Cdd:TIGR02168 479 AAERELAQLQARL----DSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV--------DEGYEAAIEAALGgr 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 530 ----LSVKLEQAMKEIQRLQEdtdKANKQSSVLERDnqrmeiQIKDlsQQIRVLLME-LEEARGNHVIRDEEVSSADISS 604
Cdd:TIGR02168 547 lqavVVENLNAAKKAIAFLKQ---NELGRVTFLPLD------SIKG--TEIQGNDREiLKNIEGFLGVAKDLVKFDPKLR 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 605 SseVISQHLVSYRNIEELQQQNQRL--------LVAL-----------------RELGETREREEQETTSSKITELQLKL 659
Cdd:TIGR02168 616 K--ALSYLLGGVLVVDDLDNALELAkklrpgyrIVTLdgdlvrpggvitggsakTNSSILERRREIEELEEKIEELEEKI 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 660 ESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQTtgvaiplhasslddisLASTPKRPSTSQTVSTPAPVPVIEST 739
Cdd:TIGR02168 694 AELEKALAELRKELEELEEELEQLRKELEELSRQISAL----------------RKDLARLEAEVEQLEERIAQLSKELT 757
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 740 EAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLH 819
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 820 ERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLklsEVRLSQQRESLLAEQRGQNLLLTNLQTIQ 899
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL---EEALALLRSELEELSEELRELESKRSELR 914
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 900 GILERSETETKQrLSSQIEKLEHEISHLKKKLGNEVEqrhtltRNLDVQLldtkrqldtetNLHLNTKELFKNAQKEIAT 979
Cdd:TIGR02168 915 RELEELREKLAQ-LELRLEGLEVRIDNLQERLSEEYS------LTLEEAE-----------ALENKIEDDEEEARRRLKR 976
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 980 LKQHLSNM-EVQLASQSSQRTGKGQPSN----KEDVDDLVSQLRQTEEQVND-LKERLKTSTSNVEQ 1040
Cdd:TIGR02168 977 LENKIKELgPVNLAAIEEYEELKERYDFltaqKEDLTEAKETLEEAIEEIDReARERFKDTFDQVNE 1043
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1429-1735 |
1.70e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.98 E-value: 1.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1429 EYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASltnnqnlIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTIT 1508
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAE-------LEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1509 QVKKIGRRYKTQYEELKAQQDkvmETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEAR 1588
Cdd:COG1196 306 RLEERRRELEERLEELEEELA---ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1589 NLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEktrkAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQK 1668
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE----ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 1669 DELDVRITALKSQYEGRISRLERELREHQErhLEQRDEPQEPSNKVPEQQRQITLKTTPASGERGIA 1735
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAE--AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
103-960 |
2.49e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 2.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 103 KFLADQQSEID-GLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKlsnqlkALTEKNKELEIAQDR 181
Cdd:TIGR02168 216 KELKAELRELElALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL------EVSELEEEIEELQKE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 182 NIAIQSQftrtKEELEAEKRDLIRTNERLSQELEYSTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQ 261
Cdd:TIGR02168 290 LYALANE----ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 262 EKELLHSQNTWLNTELktktdellalgREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAK 341
Cdd:TIGR02168 366 ELEELESRLEELEEQL-----------ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 342 EQQASM-----EEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLlkeagEANKAIQDHLLEVEQSKDQMEK 416
Cdd:TIGR02168 435 LKELQAeleelEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL-----QARLDSLERLQENLEGFSEGVK 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 417 EMLEKIGKLEKELENVNDLLSATKRKGAILSeeelAAMSPTAAAVAkivkpgMKLTELYNAYVETQDQ--------LLLE 488
Cdd:TIGR02168 510 ALLKNQSGLSGILGVLSELISVDEGYEAAIE----AALGGRLQAVV------VENLNAAKKAIAFLKQnelgrvtfLPLD 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 489 KLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL------SVKLEQAMKEIQRLQEDTD------------- 549
Cdd:TIGR02168 580 SIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPGYRivtldgdlvrpgg 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 550 -----KANKQSSVLERDNQ--RMEIQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYR-NIEE 621
Cdd:TIGR02168 660 vitggSAKTNSSILERRREieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlARLE 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 622 LQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQTtgva 701
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL---- 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 702 iplhassldDISLASTPKRPSTSQtvstpapvpviesTEAIEAKAALKQLQEIFENykkekaenekiQNEQLEKLQEQVT 781
Cdd:TIGR02168 816 ---------NEEAANLRERLESLE-------------RRIAATERRLEDLEEQIEE-----------LSEDIESLAAEIE 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 782 DLRSQNTKISTQLDFASKRYEMLQdnvegyrREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLk 861
Cdd:TIGR02168 863 ELEELIEELESELEALLNERASLE-------EALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL- 934
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 862 kekemlklsEVRLSQQRESLLAEqrgQNLLLTNLQTIQGILERSETETKQRLSS---QIEKL-------EHEISHLKKKL 931
Cdd:TIGR02168 935 ---------EVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRRLKRlenKIKELgpvnlaaIEEYEELKERY 1002
|
890 900
....*....|....*....|....*....
gi 966923050 932 GNEVEQRHTLTRNLDvQLLDTKRQLDTET 960
Cdd:TIGR02168 1003 DFLTAQKEDLTEAKE-TLEEAIEEIDREA 1030
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
489-1250 |
7.28e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 7.28e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 489 KLENKRIN-KYLDEIVKEVEAKAPILKRQ----------REEYERAQKAVASLSvkLEQAMKEIQRLQEDTDKANKQSSV 557
Cdd:TIGR02168 180 KLERTRENlDRLEDILNELERQLKSLERQaekaerykelKAELRELELALLVLR--LEELREELEELQEELKEAEEELEE 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 558 LERDNQRMEIQIKDLSQQIRVLLMELEEARG---NHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALR 634
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKelyALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 635 ELgetrereeqETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQTTgvaiplhassLDDISL 714
Cdd:TIGR02168 338 EL---------AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE----------LQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 715 ASTPKRPSTSQTVSTPAPVPVIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQ------NEQLEKLQEQVTDLRSQNT 788
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQeelerlEEALEELREELEEAEQALD 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 789 KISTQLDFASKRYEMLQD---NVEGYRREITSLHERNQKLTATTQKQEQIINT-------MTQDLRGANEKLAV----AE 854
Cdd:TIGR02168 479 AAERELAQLQARLDSLERlqeNLEGFSEGVKALLKNQSGLSGILGVLSELISVdegyeaaIEAALGGRLQAVVVenlnAA 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 855 VRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQnlLLTNLQTIQGILERSETeTKQRLSSQIEKLeheISHLK--KKLG 932
Cdd:TIGR02168 559 KKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDRE--ILKNIEGFLGVAKDLVK-FDPKLRKALSYL---LGGVLvvDDLD 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 933 NEVEQRHTLTRNLDVQLLD----------TKRQLDTETNLHLNTKELfKNAQKEIATLKQHLSNMEVQLASQSSQRTGKg 1002
Cdd:TIGR02168 633 NALELAKKLRPGYRIVTLDgdlvrpggviTGGSAKTNSSILERRREI-EELEEKIEELEEKIAELEKALAELRKELEEL- 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1003 qpsnKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVRKNIEvrlkesaefqtQLEK 1082
Cdd:TIGR02168 711 ----EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE-----------EAEE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1083 KLMEVEKEKQELQDDkrraIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERel 1162
Cdd:TIGR02168 776 ELAEAEAEIEELEAQ----IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE-- 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1163 mlhaadvealqaAKEQVSKMASVRQHLEETTQKAESQL---LECKASWEERERMLKDEVSKCVCRCEDLEKQNKLLHDQI 1239
Cdd:TIGR02168 850 ------------LSEDIESLAAEIEELEELIEELESELealLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
810
....*....|.
gi 966923050 1240 EKLSDKVVASV 1250
Cdd:TIGR02168 918 EELREKLAQLE 928
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1006-1720 |
3.17e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.95 E-value: 3.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1006 NKEDVDDLVSQLRQTEEQVNDLkERLKTSTSNVEqYRAMVTSLE-ESLNKEKQVTEEVRKNIEVRLKESAEfQTQLEKKL 1084
Cdd:PTZ00121 1048 IDEDIDGNHEGKAEAKAHVGQD-EGLKPSYKDFD-FDAKEDNRAdEATEEAFGKAEEAKKTETGKAEEARK-AEEAKKKA 1124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1085 MEVEK-EKQELQDDKRRAIESMEQQlselkktlssvQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELM 1163
Cdd:PTZ00121 1125 EDARKaEEARKAEDARKAEEARKAE-----------DAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEEL 1193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1164 LHAADVEALQAAK--EQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNKLLHDQIEK 1241
Cdd:PTZ00121 1194 RKAEDARKAEAARkaEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1242 LSDKVVAsvkEGVQGPLNVSLSEEGKSQEQIleilrfiRREKEIAETRFEVAQVESLRYRQRVELLERELQELQdslnAE 1321
Cdd:PTZ00121 1274 AEEARKA---DELKKAEEKKKADEAKKAEEK-------KKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK----AE 1339
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1322 REKVQVTAKTmAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLElDILPLQEANAELSEKSGMLQAEK 1401
Cdd:PTZ00121 1340 EAKKAAEAAK-AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD-EAKKKAEEDKKKADELKKAAAAK 1417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1402 KLLEEDVKRWKARNQHLVSQQKdpdTEEYRKllsEKEVHTKRIQQLTEEIGRLKAEIARSnasltnnqnlIQSLKEDLNK 1481
Cdd:PTZ00121 1418 KKADEAKKKAEEKKKADEAKKK---AEEAKK---ADEAKKKAEEAKKAEEAKKKAEEAKK----------ADEAKKKAEE 1481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1482 VRTEKETIQKDLDAKiiDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLNQ 1561
Cdd:PTZ00121 1482 AKKADEAKKKAEEAK--KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK 1559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1562 AETKSKSLESQVENLQKTLSEKETE-ARNLQEQTVQLQSELSRLRQDL---QDRTTQEEQLRQQITEKEEKTRKAIVAAK 1637
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEeAKKAEEARIEEVMKLYEEEKKMkaeEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1638 SKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQE-RHLEQRDEPQEPSNKVPE 1716
Cdd:PTZ00121 1640 KKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEaKKAEELKKKEAEEKKKAE 1719
|
....
gi 966923050 1717 QQRQ 1720
Cdd:PTZ00121 1720 ELKK 1723
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
743-1406 |
6.63e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.59 E-value: 6.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 743 EAKAALK--QLQEIFENYKKEKAENE-KIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLH 819
Cdd:COG1196 208 QAEKAERyrELKEELKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 820 ERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRgqnLLLTNLQTIQ 899
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE---EAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 900 GILERSETETKQRLSSQIEKLEHEISHLKKKLgneveqrhtltrnldvqlldtkrqldtetnlhlntkelfkNAQKEIAT 979
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAA----------------------------------------ELAAQLEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 980 LKQHLSNMEVQLASQSSQRtgkgqpsnkedvDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVT 1059
Cdd:COG1196 405 LEEAEEALLERLERLEEEL------------EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1060 EEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQ 1139
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1140 ARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRqhleettqkaESQLLECKASWEERERMLKDEVS 1219
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA----------AVDLVASDLREADARYYVLGDTL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1220 KCVCRCEDLEKQNKLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLR 1299
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1300 YRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKL--- 1376
Cdd:COG1196 703 EEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgpv 782
|
650 660 670
....*....|....*....|....*....|....*.
gi 966923050 1377 ------ELDIlpLQEANAELSEKSGMLQAEKKLLEE 1406
Cdd:COG1196 783 nllaieEYEE--LEERYDFLSEQREDLEEARETLEE 816
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
911-1460 |
8.19e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 8.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 911 QRLSSQIEKLEHEISHLKKklgneveqrhtltRNLDVQLLDTKRQLDTETNLHLNTKELFKNAQKEIATLKQHLSNMEVQ 990
Cdd:COG1196 216 RELKEELKELEAELLLLKL-------------RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELE 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 991 LASQssqrtgkgqpsnKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVR---KNIE 1067
Cdd:COG1196 283 LEEA------------QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEeelEEAE 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1068 VRLKESAEFQTQLEKKLMEVEK---EKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDC 1144
Cdd:COG1196 351 EELEEAEAELAEAEEALLEAEAelaEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1145 QEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKAS-WEERERMLKDEVSKCVC 1223
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARlLLLLEAEADYEGFLEGV 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1224 RCEDLEKQNKLLHDQI------EKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQIL----------------EILRFIRR 1281
Cdd:COG1196 511 KAALLLAGLRGLAGAVavligvEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLkaakagratflpldkiRARAALAA 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1282 EKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAERE----------KVQVTAKTMAQHEELMKKTETMNVVMET 1351
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLeaalrravtlAGRLREVTLEGEGGSAGGSLTGGSRREL 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1352 NKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYR 1431
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEE 750
|
570 580
....*....|....*....|....*....
gi 966923050 1432 KLLSEKEVhTKRIQQLTEEIGRLKAEIAR 1460
Cdd:COG1196 751 EALEELPE-PPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1355-1670 |
8.63e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 8.63e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1355 LREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSgmLQAEKKLLEEDVKRWKARNQHLvSQQKDPDTEEYRKLL 1434
Cdd:TIGR02168 218 LKAELRELELALLVLRLEELREELEELQEELKEAEEELEE--LTAELQELEEKLEELRLEVSEL-EEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1435 SEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKkig 1514
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE--- 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1515 RRYKTQYEELKAQQDKVMETSaqssgdhQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEArnLQEQT 1594
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLE-------LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAEL 442
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923050 1595 VQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEktrkAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDE 1670
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQ----ALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1058-1695 |
9.46e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 9.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1058 VTEEVRKNIEvRLKESAE----FQtQLEKKLMEVEKEKQELQDDKRRA-IESMEQQLSELKKTLSSVQNEVQE---ALQR 1129
Cdd:COG1196 194 ILGELERQLE-PLERQAEkaerYR-ELKEELKELEAELLLLKLRELEAeLEELEAELEELEAELEELEAELAEleaELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1130 ASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQvskMASVRQHLEETTQKAESQLLECKASWEE 1209
Cdd:COG1196 272 LRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE---LEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1210 RErmlkdevskcvcrcEDLEKQNKLLHDQIEKLSDkvvasvkegvqgplnvslsEEGKSQEQILEILRFIRREKEIAETR 1289
Cdd:COG1196 349 AE--------------EELEEAEAELAEAEEALLE-------------------AEAELAEAEEELEELAEELLEALRAA 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1290 FEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVvmetnkmLREEKERLEQDLQQM 1369
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE-------LEEEEEALLELLAEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1370 QAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDP-------DTEEYRKLL------SE 1436
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGavavligVEAAYEAALeaalaaAL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1437 KEVHTKRIQQLTEEIGRLKAEIA-RSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIG- 1514
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAgRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLv 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1515 -RRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQ 1593
Cdd:COG1196 629 aARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1594 TVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTK--------------------- 1652
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERelerlereiealgpvnllaie 788
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 966923050 1653 ENEELKQRNGALDQQKDELDVRITALksqyEGRISRLERELRE 1695
Cdd:COG1196 789 EYEELEERYDFLSEQREDLEEARETL----EEAIEEIDRETRE 827
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
95-583 |
1.13e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 73.52 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 95 KSVQNKLEKFLADQQSEIDGLKGRHEKFK------VESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKal 168
Cdd:TIGR04523 172 ENELNLLEKEKLNIQKNIDKIKNKLLKLElllsnlKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEIS-- 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 169 tEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLsQELEYSTEDV---------KRLNEKLKESNTTKGELQ 239
Cdd:TIGR04523 250 -NTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL-NQLKSEISDLnnqkeqdwnKELKSELKNQEKKLEEIQ 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 240 LKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKG----------NEILELKCNLENKKEEV 309
Cdd:TIGR04523 328 NQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQsykqeiknleSQINDLESKIQNQEKLN 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 310 SRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH------NELNAHIK--------LSNLYKSAADDSEAK 375
Cdd:TIGR04523 408 QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSvkeliiKNLDNTREsletqlkvLSRSINKIKQNLEQK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 376 SNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSK---DQMEKEMLEK---IGKLEKELENVNDLLSATKRKGAILSEE 449
Cdd:TIGR04523 488 QKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKekiEKLESEKKEKeskISDLEDELNKDDFELKKENLEKEIDEKN 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 450 ElaamsptaaavaKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVAS 529
Cdd:TIGR04523 568 K------------EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN 635
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 966923050 530 LSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIRVLLMEL 583
Cdd:TIGR04523 636 IKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKEL 689
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
948-1760 |
1.30e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 74.00 E-value: 1.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 948 QLLDTKRQLDTETNLHlntkelfknaQKEIATLKQHLSNMEVQLASQSSQRTGKGQPSNKEDV--DDLVSQLRQTEEQVN 1025
Cdd:pfam15921 86 QVKDLQRRLNESNELH----------EKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQsqEDLRNQLQNTVHELE 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1026 DLK----ERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQT--------QLEKKLMEVEKEKQE 1093
Cdd:pfam15921 156 AAKclkeDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmhfrslgsAISKILRELDTEISY 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1094 LQDdkrrAIESMEQQLSELKktlSSVQNEVQEALQ----RASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLhaadv 1169
Cdd:pfam15921 236 LKG----RIFPVEDQLEALK---SESQNKIELLLQqhqdRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEI----- 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1170 eALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLK-------DEVSKCVCRCEDLEKQNKLLHDQIEKL 1242
Cdd:pfam15921 304 -IQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEkqlvlanSELTEARTERDQFSQESGNLDDQLQKL 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1243 SDKVVASVKE-GVQGPLNVSLSEEGKSQEQILEILRfirreKEIAETRFEVAQVESL--RYRQRVELLERELQELQDSLN 1319
Cdd:pfam15921 383 LADLHKREKElSLEKEQNKRLWDRDTGNSITIDHLR-----RELDDRNMEVQRLEALlkAMKSECQGQMERQMAAIQGKN 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1320 AEREKVQ-VTAKTMAQHEELMKKTETMNvvmeTNKMLREEKERLEQDLQ-QMQAKVRKLEldilplqEANAELSEksgmL 1397
Cdd:pfam15921 458 ESLEKVSsLTAQLESTKEMLRKVVEELT----AKKMTLESSERTVSDLTaSLQEKERAIE-------ATNAEITK----L 522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1398 QAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQ-----QLTEEIGRLKAEIARSNASLTNNQNLI 1472
Cdd:pfam15921 523 RSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQienmtQLVGQHGRTAGAMQVEKAQLEKEINDR 602
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1473 QSLKEDLNKVRTEKETIQKDLDAKIIDIQ-EKVKTITqvkkigrrykTQYEELKAQQDKVMETSaqssgdhqeqhvlvQE 1551
Cdd:pfam15921 603 RLELQEFKILKDKKDAKIRELEARVSDLElEKVKLVN----------AGSERLRAVKDIKQERD--------------QL 658
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1552 MQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQ-------LRQQITE 1624
Cdd:pfam15921 659 LNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHamkvamgMQKQITA 738
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1625 KeektRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQ-------QKDELDVRITALKSQ---YEGRISRLERELR 1694
Cdd:pfam15921 739 K----RGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQelstvatEKNKMAGELEVLRSQerrLKEKVANMEVALD 814
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923050 1695 EHQERHLEQRDEPQEPSNKVPEQQRQITLKTTPASGErGIASTSDPPTANIKPTPVVSTPSKVTAA 1760
Cdd:pfam15921 815 KASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGP-GYTSNSSMKPRLLQPASFTRTHSNVPSS 879
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1008-1708 |
1.73e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.64 E-value: 1.73e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1008 EDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLNKEKQV--TEEVRKNIEVRLKESAEfQTQLEKKLM 1085
Cdd:PTZ00121 1137 EDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVrkAEELRKAEDARKAEAAR-KAEEERKAE 1215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1086 EVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKI-----AVEAQNKYER 1160
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAdelkkAEEKKKADEA 1295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1161 ELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAEsqllECKASWEERERmlKDEVSKCvcrcEDLEKQNKLLHDQIE 1240
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD----AAKKKAEEAKK--AAEAAKA----EAEAAADEAEAAEEK 1365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1241 KLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYR-QRVELLERELQELQDSLN 1319
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKaEEKKKADEAKKKAEEAKK 1445
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1320 AEREKVQVTAKTMAqhEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQA 1399
Cdd:PTZ00121 1446 ADEAKKKAEEAKKA--EEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK 1523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1400 EKKLLEEDVKRwKARNQHLVSQQKDPD----TEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSnaslTNNQNLIQSL 1475
Cdd:PTZ00121 1524 ADEAKKAEEAK-KADEAKKAEEKKKADelkkAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK----AEEARIEEVM 1598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1476 KEDLNKVRTEKETIQKDLDAKIIdiQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQEL 1555
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKIK--AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1556 KETLNQAETKSKSLESQvenlqktLSEKETEARNLQEqtvqlqselsrLRQDLQDRTTQEEQLRQqitEKEEKTRKAiva 1635
Cdd:PTZ00121 1677 AEEAKKAEEDEKKAAEA-------LKKEAEEAKKAEE-----------LKKKEAEEKKKAEELKK---AEEENKIKA--- 1732
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966923050 1636 akskiahlagvkDQLTKENEELKQRNGALDQQKDELDvRITALKSQYEGRISRLERELREHQERHLEQRDEPQ 1708
Cdd:PTZ00121 1733 ------------EEAKKEAEEDKKKAEEAKKDEEEKK-KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
112-696 |
2.01e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 2.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 112 IDGLKGRHEKFKVESEQ--QYFEIEKRLshsqerlvnETRECQSLRLELEKLSNQLKALTEKNKELEIAQDRNIA----I 185
Cdd:COG1196 195 LGELERQLEPLERQAEKaeRYRELKEEL---------KELEAELLLLKLRELEAELEELEAELEELEAELEELEAelaeL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 186 QSQFTRTKEELEAEKRDLIRTNER---LSQELEYSTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQE 262
Cdd:COG1196 266 EAELEELRLELEELELELEEAQAEeyeLLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 263 KELLHSQNTWLNTELKTKTDELLALGREKGNEILElkcnLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKE 342
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE----LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 343 QQASMEEkfhnelnahiklsnlyksAADDSEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKI 422
Cdd:COG1196 422 ELEELEE------------------ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELL 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 423 GKLEKELENVNDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRinkyldei 502
Cdd:COG1196 484 EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED-------- 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 503 vkEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIRVLLME 582
Cdd:COG1196 556 --DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 583 leeaRGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESA 662
Cdd:COG1196 634 ----AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
570 580 590
....*....|....*....|....*....|....
gi 966923050 663 LTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQ 696
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
102-688 |
2.30e-12 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 72.79 E-value: 2.30e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 102 EKFLADQQSEIDGLKGRHEKFKVESEqqyfEIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKALTEKNKELEiaqdr 181
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTE----NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE----- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 182 niaiqsqftRTKEELEAEKRdlirtnerlsqELEYSTEDVKRLNEKLKESNTTKGELQLKLDELQasdvsvkyrekrlEQ 261
Cdd:PRK03918 235 ---------ELKEEIEELEK-----------ELESLEGSKRKLEEKIRELEERIEELKKEIEELE-------------EK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 262 EKELlhsqntwlnTELKTKTDELLALGREKgNEILELKCNLEnkkEEVSRLEEQMNGLktsnEHLQKHVEDLLTKLKEAK 341
Cdd:PRK03918 282 VKEL---------KELKEKAEEYIKLSEFY-EEYLDELREIE---KRLSRLEEEINGI----EERIKELEEKEERLEELK 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 342 EQQASMEEKFhNELNAHIKLSNLYKSAADDSEAKSNELT-RAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEmle 420
Cdd:PRK03918 345 KKLKELEKRL-EELEERHELYEEAKAKKEELERLKKRLTgLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE--- 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 421 kIGKLEKeleNVNDLLSAtKRK----GAILSEE-ELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRI 495
Cdd:PRK03918 421 -IKELKK---AIEELKKA-KGKcpvcGRELTEEhRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEL 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 496 NKYLD--EIVKEVEAK-----APILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEdtdkANKQSSVLERDNQRMEIQ 568
Cdd:PRK03918 496 IKLKElaEQLKELEEKlkkynLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEE 571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 569 IKDLSQQIRVL-----------LMELEEARGNHV-IRDEEVSSADISSSSEVISQHLV-SYRNIEELQQQNQRLLVALRE 635
Cdd:PRK03918 572 LAELLKELEELgfesveeleerLKELEPFYNEYLeLKDAEKELEREEKELKKLEEELDkAFEELAETEKRLEELRKELEE 651
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 966923050 636 LGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRD 688
Cdd:PRK03918 652 LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
132-671 |
4.68e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 4.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 132 EIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLS 211
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 212 QELEYSTEDVKRLNEKLKESNTTKGELQLKLDELQasdvsvkyrEKRLEQEKELLHSQNTWLntELKTKTDELLALGREK 291
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAE---------EALLEAEAELAEAEEELE--ELAEELLEALRAAAEL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 292 GNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADD 371
Cdd:COG1196 399 AAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 372 SEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGKLEKELE-------------NVNDLLSA 438
Cdd:COG1196 479 LAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEaaleaalaaalqnIVVEDDEV 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 439 TKRKGAILSEEELAAMS---PTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKR 515
Cdd:COG1196 559 AAAAIEYLKAAKAGRATflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRR 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 516 QREEYERAQKAVASLSVKLEQAMKEIQRLQEdtdkanKQSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNHVIRDE 595
Cdd:COG1196 639 AVTLAGRLREVTLEGEGGSAGGSLTGGSRRE------LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 596 EVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLES-------ALTELEQ 668
Cdd:COG1196 713 EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllAIEEYEE 792
|
...
gi 966923050 669 LRK 671
Cdd:COG1196 793 LEE 795
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
234-1125 |
1.02e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 70.77 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 234 TKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLE 313
Cdd:pfam02463 150 MKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 314 EQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEA 393
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 394 GEANKAIQDHLLEVEQSKDQMEKEMlEKIGKLEKELENVNDLLSATKRKGAILSEEELAAMSPTAAAVAKIVkpgmKLTE 473
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEK-EEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKK----LESE 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 474 LYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEakapILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANK 553
Cdd:pfam02463 385 RLSSAAKLKEEELELKSEEEKEAQLLLELARQLE----DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKL 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 554 QSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVAL 633
Cdd:pfam02463 461 LKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 634 RELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQrdmyrillSQTTGVAIPLHASSLDDIS 713
Cdd:pfam02463 541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS--------IAVLEIDPILNLAQLDKAT 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 714 LASTPKRpsTSQTVSTPAPVPVIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQ 793
Cdd:pfam02463 613 LEADEDD--KRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELA 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 794 LDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEvraENLKKEKEMLKLSEVR 873
Cdd:pfam02463 691 KEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEE---EEKSRLKKEEKEEEKS 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 874 LSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQRLSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDTK 953
Cdd:pfam02463 768 ELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 954 RQLDTETNLHLNTKELFKNAQKEIATLKQHLSN-MEVQLASQSSQRTGKGQpsnKEDVDDLVSQLRQTEEQVNDLKERLK 1032
Cdd:pfam02463 848 LEKLAEEELERLEEEITKEELLQELLLKEEELEeQKLKDELESKEEKEKEE---KKELEEESQKLNLLEEKENEIEERIK 924
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1033 TSTSNVEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQdDKRRAIESMEQQLSEL 1112
Cdd:pfam02463 925 EEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKE-ERYNKDELEKERLEEE 1003
|
890
....*....|...
gi 966923050 1113 KKTLSSVQNEVQE 1125
Cdd:pfam02463 1004 KKKLIRAIIEETC 1016
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1049-1722 |
1.46e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 1.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1049 EESLNKEKQVTEEVRKNIEvrlkeSAEFQTQLEKKLMEVEKEKQELQ-----------DDKRRAIESMEQQLSELKKTLS 1117
Cdd:TIGR02168 185 RENLDRLEDILNELERQLK-----SLERQAEKAERYKELKAELRELElallvlrleelREELEELQEELKEAEEELEELT 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1118 SVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVS-KMASVRQHLEETtQKA 1196
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEaQLEELESKLDEL-AEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1197 ESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNKLLHDQIEKLSDKVVasvkegvqgplnvslseegksqeQILEIL 1276
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA-----------------------QLELQI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1277 RFIRREKEIAETRFEVAQVESLRYRQRVELLERelqelqdslNAEREKVQVTAKTMAQHEELMKKTETMNVVMEtnkmlr 1356
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLK---------KLEEAELKELQAELEELEEELEELQEELERLE------ 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1357 eekERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQH-----LVSQQKDPDtEEYR 1431
Cdd:TIGR02168 461 ---EALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgVLSELISVD-EGYE 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1432 K------------LLSEKEVHTKRIQQLTEEIGRLKAEI--------ARSNASLTNNQNLIQSLKEDLNKVRTEKETIQK 1491
Cdd:TIGR02168 537 AaieaalggrlqaVVVENLNAAKKAIAFLKQNELGRVTFlpldsikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRK 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1492 DLDAkIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKEtlnqAETKSKSLES 1571
Cdd:TIGR02168 617 ALSY-LLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEE----LEEKIEELEE 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1572 QVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLT 1651
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966923050 1652 KENEELKQRNGALDQQKDELDVRITALKSQYEgRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQIT 1722
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKALRE-ALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1350-1699 |
2.45e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 69.28 E-value: 2.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1350 ETNKMLREEKERLEQDLQQMQAKVRK---LELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPD 1426
Cdd:TIGR04523 187 KNIDKIKNKLLKLELLLSNLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1427 TEEYRKLLsEKEVHTKRIQQLTEEIGRLKAEIarSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKT 1506
Cdd:TIGR04523 267 KQLSEKQK-ELEQNNKKIKELEKQLNQLKSEI--SDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1507 ITQVKKIGRRYKTQYEELKAQQDKvmetsaqssgDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETE 1586
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEE----------KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1587 ARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQ 1666
Cdd:TIGR04523 414 IKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS 493
|
330 340 350
....*....|....*....|....*....|...
gi 966923050 1667 QKDELDvRITALKSQYEGRISRLERELREHQER 1699
Cdd:TIGR04523 494 KEKELK-KLNEEKKELEEKVKDLTKKISSLKEK 525
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1007-1658 |
3.32e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 68.94 E-value: 3.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1007 KEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLnkekqvtEEVRKNIEvRLKESAEFQTQLEKKLME 1086
Cdd:PRK03918 178 IERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL-------EKLEKEVK-ELEELKEEIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1087 VEKEKQELQDDKRraieSMEQQLSELKKTLSSVQNEVQEalqraSTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHA 1166
Cdd:PRK03918 250 LEGSKRKLEEKIR----ELEERIEELKKEIEELEEKVKE-----LKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1167 ADVEALQaakEQVSKMASVRQHLEETTQKaESQLLECKASWEERERMLKDEvskcvcrcedlekqnKLLHDQIEKLSDKV 1246
Cdd:PRK03918 321 EEINGIE---ERIKELEEKEERLEELKKK-LKELEKRLEELEERHELYEEA---------------KAKKEELERLKKRL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1247 VASVKEGVQGPLNVSLSEEGKSQEQILEILRFIRR-EKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKV 1325
Cdd:PRK03918 382 TGLTPEKLEKELEELEKAKEEIEEEISKITARIGElKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAEL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1326 QVTAKTMAQHEELMKKtetmnvvmetnkmLREEKERLEqdlqqmqaKVRKLELDILPLQEANAELSEksgmlqAEKKLLE 1405
Cdd:PRK03918 462 KRIEKELKEIEEKERK-------------LRKELRELE--------KVLKKESELIKLKELAEQLKE------LEEKLKK 514
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1406 EDVKRWKArnqhlvsqqkdpDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTE 1485
Cdd:PRK03918 515 YNLEELEK------------KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1486 KETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSaqssgdhqeqhvlvqemqelkETLNQAETK 1565
Cdd:PRK03918 583 GFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAF---------------------EELAETEKR 641
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1566 SKSLESQVENLQKTLSEKETEarNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQItEKEEKTRKAIVAAKSKIAHLAG 1645
Cdd:PRK03918 642 LEELRKELEELEKKYSEEEYE--ELREEYLELSRELAGLRAELEELEKRREEIKKTL-EKLKEELEEREKAKKELEKLEK 718
|
650
....*....|...
gi 966923050 1646 VKDQLTKENEELK 1658
Cdd:PRK03918 719 ALERVEELREKVK 731
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1350-1721 |
6.51e-11 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 68.12 E-value: 6.51e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1350 ETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEE 1429
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKK 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1430 YRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNaslTNNQNLIQSLKEDLNKVRTEKETIQ------KDLDAKIIDIQEK 1503
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSE---SENSEKQRELEEKQNEIEKLKKENQsykqeiKNLESQINDLESK 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1504 VKTITQVKKIG----RRYKTQYEELKAQQDKVMETSAQS----SGDHQEQHVLVQEMQELKETLNQAETKSKSLE----- 1570
Cdd:TIGR04523 400 IQNQEKLNQQKdeqiKKLQQEKELLEKEIERLKETIIKNnseiKDLTNQDSVKELIIKNLDNTRESLETQLKVLSrsink 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1571 --SQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKS-----KIAHL 1643
Cdd:TIGR04523 480 ikQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelKKENL 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1644 AGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQ----------YEGRISRLERELREHQERH---LEQRDEPQEP 1710
Cdd:TIGR04523 560 EKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEkkdlikeieeKEKKISSLEKELEKAKKENeklSSIIKNIKSK 639
|
410
....*....|.
gi 966923050 1711 SNKVPEQQRQI 1721
Cdd:TIGR04523 640 KNKLKQEVKQI 650
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
120-568 |
2.27e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.24 E-value: 2.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 120 EKFKVESEQQYFEIEKRLShsqeRLVNETRECQSLRLELEKLSNQLKALTEKNKELEiaqdRNIAIQSQFTRTKEELEAE 199
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLS----RLEEEINGIEERIKELEEKEERLEELKKKLKELE----KRLEELEERHELYEEAKAK 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 200 KRDLirtnERLSQELeySTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKEllhsqntwlntELKT 279
Cdd:PRK03918 371 KEEL----ERLKKRL--TGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIE-----------ELKK 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 280 KTDELLALGRE-----KGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHV--EDLLTKLKEAKEQQASMEEKFh 352
Cdd:PRK03918 434 AKGKCPVCGRElteehRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKL- 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 353 nelnahiklsnlyksaaddSEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEK--EMLEKIGKLEKELE 430
Cdd:PRK03918 513 -------------------KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKlaELEKKLDELEEELA 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 431 NVNDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKA 510
Cdd:PRK03918 574 ELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966923050 511 PIL-----KRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQssVLERDNQRMEIQ 568
Cdd:PRK03918 654 KKYseeeyEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE--LEEREKAKKELE 714
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
965-1705 |
4.08e-10 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 65.84 E-value: 4.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 965 NTKELFKNAQKEIATLKQHLSNMEVQLASQSSqRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAM 1044
Cdd:TIGR00606 245 NELDPLKNRLKEIEHNLSKIMKLDNEIKALKS-RKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVD 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1045 VTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQD---------------DKRRAIESMEQQL 1109
Cdd:TIGR00606 324 CQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATrleldgfergpfserQIKNFHTLVIERQ 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1110 SELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKM-ASVRQH 1188
Cdd:TIGR00606 404 EDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELdQELRKA 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1189 LEETTQKAESQLLECKASWEERERMLKDEVSKCVCR-CEDLEKQN--KLLHDQIEKLS----DKVVASVKEGVQGPLN-V 1260
Cdd:TIGR00606 484 ERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKlDQEMEQLNhhTTTRTQMEMLTkdkmDKDEQIRKIKSRHSDElT 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1261 SLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMK 1340
Cdd:TIGR00606 564 SLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLER 643
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1341 ktetmnvvmetnkmLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVS 1420
Cdd:TIGR00606 644 --------------LKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1421 QQKDPDTEeYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIiDI 1500
Cdd:TIGR00606 710 KLKSTESE-LKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK-VC 787
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1501 QEKVKTITQVkkigrryktqYEELKAQQDKVMETSAQSSGDHqeqhvLVQEMQELKETLNQAETKSKSLESQVENLQKTL 1580
Cdd:TIGR00606 788 LTDVTIMERF----------QMELKDVERKIAQQAAKLQGSD-----LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLI 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1581 SEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRkAIVAAKSKIAHLAGVKDQLTKENEELKQR 1660
Cdd:TIGR00606 853 QDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR-EIKDAKEQDSPLETFLEKDQQEKEELISS 931
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 966923050 1661 NGALDQQKDELDVRITALKSQYEGRISRLERELREHQERHLEQRD 1705
Cdd:TIGR00606 932 KETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKE 976
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1194-1714 |
7.94e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.70 E-value: 7.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1194 QKAESQLLECKASWEERERMLKDEVSkcvcRCEDLEKQNKLLHDQIEKLSDKVvasvkegvqgplNVSLSEEGKSQEQIL 1273
Cdd:PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIK----RTENIEELIKEKEKELEEVLREI------------NEISSELPELREELE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1274 EILRFIRREKEIAEtRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNK 1353
Cdd:PRK03918 225 KLEKEVKELEELKE-EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1354 MLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLE---------EDVKRWKARNQHLVSQQKD 1424
Cdd:PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEeleerhelyEEAKAKKEELERLKKRLTG 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1425 PDTEEYRKLLSE----KEVHTKRIQQLTEEIGRLKAEIARSNASLT-------------------NNQNLIQSLKEDLNK 1481
Cdd:PRK03918 384 LTPEKLEKELEElekaKEEIEEEISKITARIGELKKEIKELKKAIEelkkakgkcpvcgrelteeHRKELLEEYTAELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1482 VRTEKETIqKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVmetsaqSSGDHQEQHVLVQEMQELKETLNQ 1561
Cdd:PRK03918 464 IEKELKEI-EEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKL------KKYNLEELEKKAEEYEKLKEKLIK 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1562 AETKSKSLESQVENLQKTLSEKETEARNLQEqtvqLQSELSRLRQDLQDRT-TQEEQLRQQITEKEEKTRKAIvaakski 1640
Cdd:PRK03918 537 LKGEIKSLKKELEKLEELKKKLAELEKKLDE----LEEELAELLKELEELGfESVEELEERLKELEPFYNEYL------- 605
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966923050 1641 aHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSqYEGRISRLERELREhqERHLEQRDEPQEPSNKV 1714
Cdd:PRK03918 606 -ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEE-LRKELEELEKKYSE--EEYEELREEYLELSREL 675
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1355-1527 |
8.23e-10 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 61.48 E-value: 8.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1355 LREEKERLEQDLQQMQAKVRKLELDilpLQEANAELSEksgmLQAEKKLLEEDVKRWKARNQHLVSQQKD-PDTEEYRKL 1433
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEAR---LEAAKTELED----LEKEIKRLELEIEEVEARIKKYEEQLGNvRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1434 LSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTItqVKKI 1513
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL--AAKI 172
|
170
....*....|....
gi 966923050 1514 GRRYKTQYEELKAQ 1527
Cdd:COG1579 173 PPELLALYERIRKR 186
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
948-1632 |
1.96e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 63.45 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 948 QLLDTKRQLDTETNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASQSSQRTGKGQPSNKE--DVDDLVSQLRQTEEQVN 1025
Cdd:TIGR00618 167 ELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKElkHLREALQQTQQSHAYLT 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1026 DLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVtEEVRKNIE-----VRLKESAEFQTQLEKKLMEVEKEKQELQDD--- 1097
Cdd:TIGR00618 247 QKREAQEEQLKKQQLLKQLRARIEELRAQEAVL-EETQERINrarkaAPLAAHIKAVTQIEQQAQRIHTELQSKMRSrak 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1098 ---KRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQA 1174
Cdd:TIGR00618 326 llmKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDIL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1175 AKEQVSKMAsvrQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRCEDLEK--QNKL---LHDQIEKLSDKVVAS 1249
Cdd:TIGR00618 406 QREQATIDT---RTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKihLQESaqsLKEREQQLQTKEQIH 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1250 VKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQV-T 1328
Cdd:TIGR00618 483 LQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASlK 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1329 AKTMAQHEELMKKTETMNVVMETNKMLREEKERLeQDLQQMQAKVRKLELDILPLQEANAELS-EKSGMLQAEKKLLEED 1407
Cdd:TIGR00618 563 EQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRL-QDLTEKLSEAEDMLACEQHALLRKLQPEqDLQDVRLHLQQCSQEL 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1408 VKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKE 1487
Cdd:TIGR00618 642 ALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFN 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1488 TIQKDLDAKIIDIQEKVKTITQV-KKIGRRYKTQYEELK-AQQDKVMETSAQSSGDHQEQHV----------LVQEMQEL 1555
Cdd:TIGR00618 722 EIENASSSLGSDLAAREDALNQSlKELMHQARTVLKARTeAHFNNNEEVTAALQTGAELSHLaaeiqffnrlREEDTHLL 801
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 1556 KETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKA 1632
Cdd:TIGR00618 802 KTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
754-1679 |
2.46e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.07 E-value: 2.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 754 IFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFA-SKRYEMLQDNVEGYRREITSLH------ERNQKLT 826
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKkALEYYQLKEKLELEEEYLLYLDylklneERIDLLQ 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 827 ATTQKQEQIINTMTQDLRGANEKLavaEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSE 906
Cdd:pfam02463 244 ELLRDEQEEIESSKQEIEKEEEKL---AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 907 TEtKQRLSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLldtKRQLDTETNLHLNTKELFKNAQKEIATLKQHLSN 986
Cdd:pfam02463 321 KE-KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELE---KLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 987 MEVQlasqssqrtgkgqpSNKEDVDDLVSQLRQTEEqvnDLKERLKTStsnveqyramvtsleeslnKEKQVTEEVRKNI 1066
Cdd:pfam02463 397 LELK--------------SEEEKEAQLLLELARQLE---DLLKEEKKE-------------------ELEILEEEEESIE 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1067 EVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQE 1146
Cdd:pfam02463 441 LKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGV 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1147 QAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRCE 1226
Cdd:pfam02463 521 GGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEID 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1227 DLEKQNKLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKsQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVEL 1306
Cdd:pfam02463 601 PILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESA-KAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ 679
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1307 LERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEA 1386
Cdd:pfam02463 680 ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKK 759
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1387 NAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIArsnaSLT 1466
Cdd:pfam02463 760 EEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKE----EEL 835
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1467 NNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQH 1546
Cdd:pfam02463 836 EELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEK 915
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1547 --VLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQlqselsrlrqdlqdrttqeeqlrqqitE 1624
Cdd:pfam02463 916 enEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLL---------------------------A 968
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 1625 KEEKTRKAIVAAKSKIAhlagvKDQLTKENEELKQRNGALDQQKDELDVRITALK 1679
Cdd:pfam02463 969 KEELGKVNLMAIEEFEE-----KEERYNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
199-1129 |
2.50e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 2.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 199 EKRDLIrtnERLSQELEYSTEDVKRLNEkLKESNTTKGELQLKLDElqasdvsVKYREKRLEQEKELLHSQNtwlntELK 278
Cdd:TIGR02169 154 ERRKII---DEIAGVAEFDRKKEKALEE-LEEVEENIERLDLIIDE-------KRQQLERLRREREKAERYQ-----ALL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 279 TKTDELLalGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAH 358
Cdd:TIGR02169 218 KEKREYE--GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEK 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 359 IKLSNLYKSAADDSEAKSNeltravDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIgKLEKELENVNDLLSA 438
Cdd:TIGR02169 296 IGELEAEIASLERSIAEKE------RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD-KLTEEYAELKEELED 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 439 TKRKgailSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKlenkrinKYLDEIVKEVEAKAPILKRQRE 518
Cdd:TIGR02169 369 LRAE----LEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEEL-------QRLSEELADLNAAIAGIEAKIN 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 519 EYERAQKAVASlsvKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIrvllmeleeargnhvirdEEVS 598
Cdd:TIGR02169 438 ELEEEKEDKAL---EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL------------------AEAE 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 599 SADISSSSEVISqhlvSYRNIEELQQQNQRLLVALRELGETREREEQETTSSKITELQ-------LKLESALTELEQLRK 671
Cdd:TIGR02169 497 AQARASEERVRG----GRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNnvvveddAVAKEAIELLKRRKA 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 672 SRQHQMQLVDSIVRQRDMYRILLSQTTGVAIPLhasslddisLASTPK-RPSTSQTVSTPAPVPVIESTEAIEAKAALKQ 750
Cdd:TIGR02169 573 GRATFLPLNKMRDERRDLSILSEDGVIGFAVDL---------VEFDPKyEPAFKYVFGDTLVVEDIEAARRLMGKYRMVT 643
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 751 LQ-EIFE-----------------NYKKEKAENEKIQnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYR 812
Cdd:TIGR02169 644 LEgELFEksgamtggsraprggilFSRSEPAELQRLR-ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE 722
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 813 REITSLHERNQKLtattqkQEQIINTMTqDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQnlll 892
Cdd:TIGR02169 723 KEIEQLEQEEEKL------KERLEELEE-DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS---- 791
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 893 tNLQTIQGILERSEtETKQRLSSQIEKLEHEIshlkKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTEtnlhlntKELFKN 972
Cdd:TIGR02169 792 -RIPEIQAELSKLE-EEVSRIEARLREIEQKL----NRLTLEKEYLEKEIQELQEQRIDLKEQIKSI-------EKEIEN 858
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 973 AQKEIATLKQHLSNMEVQLASQSSQRTGKgqpsnKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESL 1052
Cdd:TIGR02169 859 LNGKKEELEEELEELEAALRDLESRLGDL-----KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1053 nkeKQVTEEVRKNIEVRLKESAEfqTQLEKKLMEVEKEKQELQDDKRRAI---ESMEQQLSELKKTLSSVQNEVQEALQR 1129
Cdd:TIGR02169 934 ---SEIEDPKGEDEEIPEEELSL--EDVQAELQRVEEEIRALEPVNMLAIqeyEEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
105-1125 |
2.59e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 63.15 E-value: 2.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 105 LADQQSEIDglkgrhekfKVESEQQYFEIEKRLSHSQErLVNETRECQSLRLELEK-----LSNQLKALTE--KNKELEI 177
Cdd:TIGR01612 698 LDDLKSKID---------KEYDKIQNMETATVELHLSN-IENKKNELLDIIVEIKKhihgeINKDLNKILEdfKNKEKEL 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 178 AQDRNiaiqsQFTRTKEELEAEKRDL--IRT------------NERLSQELEYSTEDVKRLNEKLKESNTTKGELQLKLD 243
Cdd:TIGR01612 768 SNKIN-----DYAKEKDELNKYKSKIseIKNhyndqinidnikDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKD 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 244 E-LQASDVSVKYrEKRLEQEKELLHSQNTWLNTELKTK-TDELLALGREKGNEILELKCNLENKKEEVSrleEQMNGLKT 321
Cdd:TIGR01612 843 DfLNKVDKFINF-ENNCKEKIDSEHEQFAELTNKIKAEiSDDKLNDYEKKFNDSKSLINEINKSIEEEY---QNINTLKK 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 322 SNEHLqKHVEDLLTKLKEAKEQQASMEEKFHNELNAhIKLSNLY-KSAADDSEaksNELTRAVDELHKLLKEAG-----E 395
Cdd:TIGR01612 919 VDEYI-KICENTKESIEKFHNKQNILKEILNKNIDT-IKESNLIeKSYKDKFD---NTLIDKINELDKAFKDASlndyeA 993
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 396 ANKAIQDHLLEVEQSKDQMEKEMLEKigKLEKELENVNDLLSATKRKGAILSEEELAAMsptaaavakivkpgmklTELY 475
Cdd:TIGR01612 994 KNNELIKYFNDLKANLGKNKENMLYH--QFDEKEKATNDIEQKIEDANKNIPNIEIAIH-----------------TSIY 1054
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 476 NAYVEtqdqllLEKLENKRINKYLDEIVKEVEakapilkrqreeyeraqkavasLSVKLEQAMKEIQRLQEDTDKANKQS 555
Cdd:TIGR01612 1055 NIIDE------IEKEIGKNIELLNKEILEEAE----------------------INITNFNEIKEKLKHYNFDDFGKEEN 1106
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 556 SVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSssEVISQHLVSYRNIEELQQQNQRLLVALRE 635
Cdd:TIGR01612 1107 IKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDL--EDVADKAISNDDPEEIEKKIENIVTKIDK 1184
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 636 lgetreREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQTTGVAIPLHASSLDDISLA 715
Cdd:TIGR01612 1185 ------KKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEK 1258
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 716 STPKRPSTSQTVSTPAPVPVIESTEA------IEAKAALKQLQEIFENYKK--EKAENEKIQNEQLEKLQEQVTDLRSQN 787
Cdd:TIGR01612 1259 SPEIENEMGIEMDIKAEMETFNISHDddkdhhIISKKHDENISDIREKSLKiiEDFSEESDINDIKKELQKNLLDAQKHN 1338
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 788 TKISTQLDFASKRYEMLQ--------DNVEGYRREItslHERNQKLTATTQKQEQIINTMTQDLrganeKLAVAEVRAEN 859
Cdd:TIGR01612 1339 SDINLYLNEIANIYNILKlnkikkiiDEVKEYTKEI---EENNKNIKDELDKSEKLIKKIKDDI-----NLEECKSKIES 1410
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 860 LKKEKEMLKLSEvRLSQQRESLLAEQRGQNLLLTNlqtiqgilERSETETKQRLSSQIEKLEHEISHLKKKLGNEVEQRH 939
Cdd:TIGR01612 1411 TLDDKDIDECIK-KIKELKNHILSEESNIDTYFKN--------ADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDH 1481
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 940 TLTRNLDVQLLDTKRQLDTETNLHLN----TKELFKNAQKEIATLKQHLSNMEVQLA-SQSSQRTGKGQPSNKEDVDDLV 1014
Cdd:TIGR01612 1482 DFNINELKEHIDKSKGCKDEADKNAKaiekNKELFEQYKKDVTELLNKYSALAIKNKfAKTKKDSEIIIKEIKDAHKKFI 1561
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1015 SQLRQTEEQVNDLKERLKT----STSNVEQYRAMV---TSLEESLNKEKQVTEeVRKNIEVRLKESAEFQTQL------- 1080
Cdd:TIGR01612 1562 LEAEKSEQKIKEIKKEKFRieddAAKNDKSNKAAIdiqLSLENFENKFLKISD-IKKKINDCLKETESIEKKIssfsids 1640
|
1050 1060 1070 1080 1090
....*....|....*....|....*....|....*....|....*....|..
gi 966923050 1081 -EKKLMEVEKEKQELQD------DKRRAIESMEQQLSELKKTLSSVQNEVQE 1125
Cdd:TIGR01612 1641 qDTELKENGDNLNSLQEfleslkDQKKNIEDKKKELDELDSEIEKIEIDVDQ 1692
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
129-438 |
2.76e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.78 E-value: 2.76e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 129 QYFEIEKRLSHSQERLVNETRECQSLRLELEKLSNQLK-ALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLirtn 207
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSqELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL---- 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 208 ERLSQELEYSTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEK-ELLHSQNTWLNTELKTKTDELLA 286
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKlEEEVSRIEARLREIEQKLNRLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 287 LgrekgNEILELKcnLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKfHNELNAHIKLSNLYK 366
Cdd:TIGR02169 827 E-----KEYLEKE--IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR-LGDLKKERDELEAQL 898
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966923050 367 SAAddsEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEK--IGKLEKELENVNDLLSA 438
Cdd:TIGR02169 899 REL---ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEIRA 969
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
756-1512 |
3.27e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 62.35 E-value: 3.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 756 ENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQI 835
Cdd:TIGR04523 60 DKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKN 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 836 INTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQrLSS 915
Cdd:TIGR04523 140 IDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKS-LES 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 916 QIEKLEHEISHLKkklgNEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASQS 995
Cdd:TIGR04523 219 QISELKKQNNQLK----DNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLK 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 996 SQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLNKEKQvteevrknievrlkESAE 1075
Cdd:TIGR04523 295 SEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSES--------------ENSE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1076 FQTQLEKKLMEVEKEKQElQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDcQEQAKIAVEAQ 1155
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKE-NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE-IERLKETIIKN 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1156 NKYERELmlhaadVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCvcrcEDLEKQNKLL 1235
Cdd:TIGR04523 439 NSEIKDL------TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL----KKLNEEKKEL 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1236 HDQIEKLSDKVvasvkegvqgplnvslsEEGKSQEQILEilrfirreKEIAETRFEVAQVESlryrqrvellerelqelq 1315
Cdd:TIGR04523 509 EEKVKDLTKKI-----------------SSLKEKIEKLE--------SEKKEKESKISDLED------------------ 545
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1316 dslnaerekvqvtaktmaqheELMKKTETMNvvmetnkmlreeKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSG 1395
Cdd:TIGR04523 546 ---------------------ELNKDDFELK------------KENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELID 592
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1396 MLQAEKKlleedvkrwkarnqhlvsqqkdpdteeyrKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSL 1475
Cdd:TIGR04523 593 QKEKEKK-----------------------------DLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKL 643
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 966923050 1476 KEDLNKVRTE-KETIQK--DLDAKIIDIQEKVKTITQVKK 1512
Cdd:TIGR04523 644 KQEVKQIKETiKEIRNKwpEIIKKIKESKTKIDDIIELMK 683
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1043-1721 |
6.53e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 6.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1043 AMVTSLEESLNKEKQVTEEVRKNIE-VRLKESaEFQTQLEKklMEVEKEK----QELQDDKR--------RAIESMEQQL 1109
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIErLDLIID-EKRQQLER--LRREREKaeryQALLKEKReyegyellKEKEALERQK 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1110 SELKKTLSSVQnevqealqrastalsneqqarrdcQEQAKIAVEAQnkyERELMLHAADVEaLQAAKEQVSKMASVRQ-H 1188
Cdd:TIGR02169 240 EAIERQLASLE------------------------EELEKLTEEIS---ELEKRLEEIEQL-LEELNKKIKDLGEEEQlR 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1189 LEETTQKAESQLLECKASWEERERmlkdevskcvcRCEDLEKQNKLLHDQIEKLSDKVVASVKE-GVQGPLNVSLSEEGK 1267
Cdd:TIGR02169 292 VKEKIGELEAEIASLERSIAEKER-----------ELEDAEERLAKLEAEIDKLLAEIEELEREiEEERKRRDKLTEEYA 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1268 SQEQILEILRfirREKEIAETRFEVAQVESLRYRQRVEllerELQELQDSLNAEREKVQVTAKTMAQ-----HEELMKKT 1342
Cdd:TIGR02169 361 ELKEELEDLR---AELEEVDKEFAETRDELKDYREKLE----KLKREINELKRELDRLQEELQRLSEeladlNAAIAGIE 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1343 ETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQ 1422
Cdd:TIGR02169 434 AKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVE 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1423 KDPDTE------EYRKLLSEKEVHTKRIQqlTEEIGRLKAEIARSNASltnNQNLIQSLKED---------LNKVRTEKE 1487
Cdd:TIGR02169 514 EVLKASiqgvhgTVAQLGSVGERYATAIE--VAAGNRLNNVVVEDDAV---AKEAIELLKRRkagratflpLNKMRDERR 588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1488 TIQKDLDAKIIDIqeKVKTITQVKKI-------------------GRRYKTQYEELKAQQDkVMETSAQSSGDHQEQHVL 1548
Cdd:TIGR02169 589 DLSILSEDGVIGF--AVDLVEFDPKYepafkyvfgdtlvvedieaARRLMGKYRMVTLEGE-LFEKSGAMTGGSRAPRGG 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1549 VQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEK 1628
Cdd:TIGR02169 666 ILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1629 TRK---AIVAAKSKIAHLAGVKDQLTKENEELKQRNGALD--------QQKDELDVRITALKSQYEGRISRLEREL-REH 1696
Cdd:TIGR02169 746 LSSleqEIENVKSELKELEARIEELEEDLHKLEEALNDLEarlshsriPEIQAELSKLEEEVSRIEARLREIEQKLnRLT 825
|
730 740
....*....|....*....|....*
gi 966923050 1697 QERHLEQrDEPQEPSNKVPEQQRQI 1721
Cdd:TIGR02169 826 LEKEYLE-KEIQELQEQRIDLKEQI 849
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
619-1200 |
7.26e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 7.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 619 IEELQQQNQRLLVALREL--GETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQ 696
Cdd:COG1196 248 LEELEAELEELEAELAELeaELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 697 TTGVAIplhasslddislastpkrpstsqtvstpapvpvIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKL 776
Cdd:COG1196 328 LEEELE---------------------------------ELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 777 QEQVTDLRSQNtkiSTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRganEKLAVAEVR 856
Cdd:COG1196 375 AEAEEELEELA---EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE---EEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 857 AENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQtiqgilERSETETKQRLSSQIEKLEHEISHLKKKLGNEVE 936
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE------AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 937 QRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASQSSQRTGKGQPSNKEDVDDLVSQ 1016
Cdd:COG1196 523 AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVD 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1017 LRQTEEQVNDLKErlktstsnveqYRAMVTSLEESLNKEKQVTEEVR-KNIEVRLKESAEFQTQLEKKLMEVEKEKQELQ 1095
Cdd:COG1196 603 LVASDLREADARY-----------YVLGDTLLGRTLVAARLEAALRRaVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1096 DDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAA 1175
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580
....*....|....*....|....*
gi 966923050 1176 KEQVSKMASVRQHLEETTQKAESQL 1200
Cdd:COG1196 752 ALEELPEPPDLEELERELERLEREI 776
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1128-1695 |
8.28e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.21 E-value: 8.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1128 QRASTALSNEQQARRDCQEQ-AKIAVEAQNKYERELmlhaadVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKAS 1206
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSlDQLKAQIEEKEEKDL------HERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1207 WEERERmlkdevskcvcRCEDLEKqnklLHDQIEKLSDKVVASVKEgvqgplNVSLSEEGKSQEQILEILRfIRREKEIA 1286
Cdd:PRK02224 243 LEEHEE-----------RREELET----LEAEIEDLRETIAETERE------REELAEEVRDLRERLEELE-EERDDLLA 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1287 ETRFEVAQVESLRyrQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTEtmnvvmETNKMLREEKERLEQDL 1366
Cdd:PRK02224 301 EAGLDDADAEAVE--ARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE------ERAEELREEAAELESEL 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1367 QQMQAKVRKLELDILPLQEANAELSEK-------SGMLQAEKKLLEEDVKRWKARNQHLVS--QQKDPDTEEYRKLLSEK 1437
Cdd:PRK02224 373 EEAREAVEDRREEIEELEEEIEELRERfgdapvdLGNAEDFLEELREERDELREREAELEAtlRTARERVEEAEALLEAG 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1438 EVHT------------------KRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEdLNKVRTEKETIQKDLDAKIID 1499
Cdd:PRK02224 453 KCPEcgqpvegsphvetieedrERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR-IERLEERREDLEELIAERRET 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1500 IQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSgdhQEQHVLVQEMQELKETLNQAETKSKSL------ESQV 1573
Cdd:PRK02224 532 IEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAR---EEVAELNSKLAELKERIESLERIRTLLaaiadaEDEI 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1574 ENLQ---KTLSEKETEARN----LQEQTVQLQSEL--SRLRQDLQDRTTQEEQLRQ------QITEKEEKTRKAIVAAKS 1638
Cdd:PRK02224 609 ERLRekrEALAELNDERRErlaeKRERKRELEAEFdeARIEEAREDKERAEEYLEQveekldELREERDDLQAEIGAVEN 688
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 966923050 1639 KIAHLAGVKDQLtKENEELKQRNGALDQQKDELDVRITALKSQYEGR-ISRLERELRE 1695
Cdd:PRK02224 689 ELEELEELRERR-EALENRVEALEALYDEAEELESMYGDLRAELRQRnVETLERMLNE 745
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1444-1722 |
8.85e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.24 E-value: 8.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1444 IQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYE- 1522
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIEr 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1523 ELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLN--------QAETKSKSLESQVENLQKTLSEKETEARNLQEQT 1594
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeeqlRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1595 VQLQSELSRLRQDLqdrttqeEQLRQQITEKeektrkaivaakskiahlAGVKDQLTKENEELKQRNGALDQQKDELDVR 1674
Cdd:TIGR02169 325 AKLEAEIDKLLAEI-------EELEREIEEE------------------RKRRDKLTEEYAELKEELEDLRAELEEVDKE 379
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 966923050 1675 ITALK---SQYEGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQIT 1722
Cdd:TIGR02169 380 FAETRdelKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIA 430
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1420-1639 |
1.03e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 59.78 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1420 SQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIID 1499
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1500 IQEKVKTI-TQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQK 1578
Cdd:COG4942 99 LEAQKEELaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966923050 1579 TLSEKETEARNLQEQTVQ-------LQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSK 1639
Cdd:COG4942 179 LLAELEEERAALEALKAErqkllarLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
651-1699 |
1.08e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 651 KITELQLKLESALTELEQLRKSRQHQMQlvdsivrqrdmYRILLSQTTGVAIPLHASSLddislastpkrpstsqtvstp 730
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLERLRREREKAER-----------YQALLKEKREYEGYELLKEK--------------------- 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 731 apvpviesteaieaKAALKQLQEIfenyKKEKAENEkiqnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNveg 810
Cdd:TIGR02169 233 --------------EALERQKEAI----ERQLASLE----EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE--- 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 811 yrrEITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNL 890
Cdd:TIGR02169 288 ---EQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 891 LLTNLQTIQGILERSETETKQRLSSQIEKLEheishlkkKLGNEVEQrhtLTRNLDvQLLDTKRQLDTEtnlhlntkelf 970
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRDELKDYREKLE--------KLKREINE---LKRELD-RLQEELQRLSEE----------- 421
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 971 knaqkeiatlkqhLSNMEVQLAsqssqrtgkgqpsnkedvdDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEE 1050
Cdd:TIGR02169 422 -------------LADLNAAIA-------------------GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1051 SLNKEKQVTEEVRKNIevrlkesaefqTQLEKKLMEVEKEKQELQDDKR--RAIESMeqqlseLKKTLSSVQNEVQEALQ 1128
Cdd:TIGR02169 470 ELYDLKEEYDRVEKEL-----------SKLQRELAEAEAQARASEERVRggRAVEEV------LKASIQGVHGTVAQLGS 532
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1129 rastalsneqqarrdCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLeckaswe 1208
Cdd:TIGR02169 533 ---------------VGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDL------- 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1209 erERMLKDEVSkcvcrcedlekqnKLLHDQIEkLSDKVVASVKEGVQGPLNVSLSEEGKsqeQILEILRFIRREKEIaet 1288
Cdd:TIGR02169 591 --SILSEDGVI-------------GFAVDLVE-FDPKYEPAFKYVFGDTLVVEDIEAAR---RLMGKYRMVTLEGEL--- 648
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1289 rFEVAQVESLRYRQRVELLERELqelqdslnAEREKVQvtaktmaqheelmkktetmnvvmetnkMLREEKERLEQDLQQ 1368
Cdd:TIGR02169 649 -FEKSGAMTGGSRAPRGGILFSR--------SEPAELQ---------------------------RLRERLEGLKRELSS 692
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1369 MQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDtEEYRKLLSEKEVHTKRIQQLT 1448
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE-QEIENVKSELKELEARIEELE 771
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1449 EEIGRLKAEIARSNASLtnNQNLIQSLKEDLNKVRTEKetiqKDLDAKIIDIQEKVKTITQVKKIGRryktqyEELKAQQ 1528
Cdd:TIGR02169 772 EDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEEV----SRIEARLREIEQKLNRLTLEKEYLE------KEIQELQ 839
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1529 DKVMETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDL 1608
Cdd:TIGR02169 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1609 QDRTTQEEQLRQQITEKEEKTR--KAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEgri 1686
Cdd:TIGR02169 920 SELKAKLEALEEELSEIEDPKGedEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRA--- 996
|
1050
....*....|...
gi 966923050 1687 sRLERELREHQER 1699
Cdd:TIGR02169 997 -KLEEERKAILER 1008
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1435-1641 |
1.22e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.84 E-value: 1.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1435 SEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEkvktitQVKKIG 1514
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEE------RREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1515 RRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLV--------QEMQELKETLNQAETKSKSLESQVENLQKTLSEKETE 1586
Cdd:COG3883 90 ERARALYRSGGSVSYLDVLLGSESFSDFLDRLSALskiadadaDLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 1587 ARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIA 1641
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1497-1696 |
1.31e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 1.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1497 IIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDkvMETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENL 1576
Cdd:COG4913 244 LEDAREQIELLEPIRELAERYAAARERLAELEY--LRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1577 QKTLSEKETEARN--------LQEQTVQLQSELSRLRqdlQDRTTQEEQLRqQITEKEEKTRKAIVAAKSKIAHLAGVKD 1648
Cdd:COG4913 322 REELDELEAQIRGnggdrleqLEREIERLERELEERE---RRRARLEALLA-ALGLPLPASAEEFAALRAEAAALLEALE 397
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 1649 QLTKENE----ELKQRNGALDQQKDELDVRITAL---KSQYEGRISRLERELREH 1696
Cdd:COG4913 398 EELEALEealaEAEAALRDLRRELRELEAEIASLerrKSNIPARLLALRDALAEA 452
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1068-1704 |
1.37e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 60.75 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1068 VRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTAlsneQQARRDCQE- 1146
Cdd:TIGR00618 197 ELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLL----KQLRARIEEl 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1147 QAKIAVEAQNKYERELMLHAADVEALQAAKEQVskmasvRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRce 1226
Cdd:TIGR00618 273 RAQEAVLEETQERINRARKAAPLAAHIKAVTQI------EQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQR-- 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1227 DLEKQNKLLHDQIEKLSDKVVASVKEGVQgplNVSLSEEGKSQEQILEILRFIRR--EKEIAETRFEVAQVESLRYRQRV 1304
Cdd:TIGR00618 345 RLLQTLHSQEIHIRDAHEVATSIREISCQ---QHTLTQHIHTLQQQKTTLTQKLQslCKELDILQREQATIDTRTSAFRD 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1305 ELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTEtmnvVMETNKMLREEKERLE--QDLQQMQAKVRKLELDILP 1382
Cdd:TIGR00618 422 LQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIH----LQESAQSLKEREQQLQtkEQIHLQETRKKAVVLARLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1383 LQEANAELSEKSgmlqaekkLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSN 1462
Cdd:TIGR00618 498 ELQEEPCPLCGS--------CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1463 ASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKI---------IDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVME 1533
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSeaedmlaceQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALH 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1534 TSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENL----------QKTLSEKETEARNLQEQTVQLQSELSR 1603
Cdd:TIGR00618 650 ALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLtywkemlaqcQTLLRELETHIEEYDREFNEIENASSS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1604 LRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYE 1683
Cdd:TIGR00618 730 LGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG 809
|
650 660
....*....|....*....|.
gi 966923050 1684 GRISRLERELREHQERHLEQR 1704
Cdd:TIGR00618 810 QEIPSDEDILNLQCETLVQEE 830
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1487-1737 |
1.46e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 1.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1487 ETIQKDLDaKIIDIQEKVKTitQVKKIGRRYKtQYEELKAQQDKVMETSAQSSGDHQEQhvLVQEMQELKETLNQAETKS 1566
Cdd:TIGR02168 182 ERTRENLD-RLEDILNELER--QLKSLERQAE-KAERYKELKAELRELELALLVLRLEE--LREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1567 KSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITE-----------------KEEKT 1629
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANlerqleeleaqleelesKLDEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1630 RKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQY----------EGRISRLERELrEHQER 1699
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVaqlelqiaslNNEIERLEARL-ERLED 414
|
250 260 270
....*....|....*....|....*....|....*...
gi 966923050 1700 HLEQRDEPQEPSNKVPEQQRQITLKTTPASGERGIAST 1737
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1070-1709 |
2.90e-08 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 59.59 E-value: 2.90e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1070 LKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIE------SMEQQLSELKKTLSSVQNEV--QEALQRASTALsNEQQAR 1141
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAElneaesDLEQDYQAASDHLNLVQTALrqQEKIERYQADL-EELEER 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1142 rdcQEQAKIAVEAQNkyERELMLHAADVEALQAAKEQVSKMASVRQHLEETtQKAESQLLECKASWEErermlkdevSKC 1221
Cdd:PRK04863 364 ---LEEQNEVVEEAD--EQQEENEARAEAAEEEVDELKSQLADYQQALDVQ-QTRAIQYQQAVQALER---------AKQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1222 VCRCEDLEKQNklLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQ-EQILEILR--------------FIRREKEIA 1286
Cdd:PRK04863 429 LCGLPDLTADN--AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQfEQAYQLVRkiagevsrseawdvARELLRRLR 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1287 ETRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKV---QVTAKTMAQ--HEELMKKTETMNVVMETnkmLREEKER 1361
Cdd:PRK04863 507 EQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRlgkNLDDEDELEqlQEELEARLESLSESVSE---ARERRMA 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1362 LEQDLQQMQAKVRKLE---LDILPLQEANAELSEKSG--------MLQAEKKLLEEDVKRWKARNQhlVSQQKDPDTEEY 1430
Cdd:PRK04863 584 LRQQLEQLQARIQRLAaraPAWLAAQDALARLREQSGeefedsqdVTEYMQQLLERERELTVERDE--LAARKQALDEEI 661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1431 RKLLSEKEVHTKRIQQLTEEI-GRLKAEI------------------ARsNASLTNNQNLIQS-------LKEDLNKV-- 1482
Cdd:PRK04863 662 ERLSQPGGSEDPRLNALAERFgGVLLSEIyddvsledapyfsalygpAR-HAIVVPDLSDAAEqlagledCPEDLYLIeg 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1483 --------RTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQY-EELKAQQDKVMETSAQSSGDhqeqhvlVQEMQ 1553
Cdd:PRK04863 741 dpdsfddsVFSVEELEKAVVVKIADRQWRYSRFPEVPLFGRAAREKRiEQLRAEREELAERYATLSFD-------VQKLQ 813
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1554 ELKETLNQAETKSKSL------ESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQ-------------DRTTQ 1614
Cdd:PRK04863 814 RLHQAFSRFIGSHLAVafeadpEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSalnrllprlnllaDETLA 893
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1615 E--EQLRQQITEKEEKTR--KAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKS--------QY 1682
Cdd:PRK04863 894 DrvEEIREQLDEAEEAKRfvQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEvvqrrahfSY 973
|
730 740 750
....*....|....*....|....*....|...
gi 966923050 1683 EGRISRLERE------LREHQERHLEQRDEPQE 1709
Cdd:PRK04863 974 EDAAEMLAKNsdlnekLRQRLEQAEQERTRARE 1006
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
499-1212 |
3.32e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 59.36 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 499 LDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSsvlerdnQRMEIQIKDLSQQIRV 578
Cdd:pfam15921 119 LQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQL-------RKMMLSHEGVLQEIRS 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 579 LLMELEEARGNHVIRDEEVSSADISSSSEVISQHL------VSY---------RNIEELQQQNQRLLVALRELGETRERE 643
Cdd:pfam15921 192 ILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILreldteISYlkgrifpveDQLEALKSESQNKIELLLQQHQDRIEQ 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 644 EQETTSSKITELQLKLESALTEleqlRKSRQHQMQLVDSIVR-QRDMYRILLSQttgvaiplhasslddisLASTpkrps 722
Cdd:pfam15921 272 LISEHEVEITGLTEKASSARSQ----ANSIQSQLEIIQEQARnQNSMYMRQLSD-----------------LEST----- 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 723 TSQTVSTpapvpVIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQL-----EKLQEQVTDLRSQNTKISTQLDFA 797
Cdd:pfam15921 326 VSQLRSE-----LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQEsgnldDQLQKLLADLHKREKELSLEKEQN 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 798 SKRYEMLQDN---VEGYRREITSLHERNQKLTA-----TTQKQEQIINTMTQdLRGANEKLAVAEVRAENLKKEKEMLKL 869
Cdd:pfam15921 401 KRLWDRDTGNsitIDHLRRELDDRNMEVQRLEAllkamKSECQGQMERQMAA-IQGKNESLEKVSSLTAQLESTKEMLRK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 870 SEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETkQRLSSQIEKLEHEISHLKKKlGNEVEQRHTLTRNLDVQL 949
Cdd:pfam15921 480 VVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEI-TKLRSRVDLKLQELQHLKNE-GDHLRNVQTECEALKLQM 557
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 950 LDTKRQLDTETNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASQSSQRTGKGQPSNKEDvddlvSQLRQTEEQVNDLK- 1028
Cdd:pfam15921 558 AEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKD-----AKIRELEARVSDLEl 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1029 ERLKTSTSNVEQYRAM-------------VTSLEESLNKEKQVTEEVRKNIEvrlKESAEFQTQLEKKLMEVEKEKQELQ 1095
Cdd:pfam15921 633 EKVKLVNAGSERLRAVkdikqerdqllneVKTSRNELNSLSEDYEVLKRNFR---NKSEEMETTTNKLKMQLKSAQSELE 709
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1096 dDKRRAIESMEQQLSELKKTLSSVQNEVQ------EALQRASTALsneQQARRDCQEQAKIAVEAQNKYERELMLHAAD- 1168
Cdd:pfam15921 710 -QTRNTLKSMEGSDGHAMKVAMGMQKQITakrgqiDALQSKIQFL---EEAMTNANKEKHFLKEEKNKLSQELSTVATEk 785
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 966923050 1169 ---VEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERER 1212
Cdd:pfam15921 786 nkmAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ 832
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
193-688 |
5.00e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 5.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 193 KEELEAEKRDLIRTNERLSQELEYSTEDVKRLN------EKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELL 266
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQaaikaeEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK 1316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 267 HSQNTWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQAS 346
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 347 MEEKFHNELNA-HIKLSNLYKSAADDSEAKSNELTRAvDELHKLLKE---AGEANKAIQDHLLEVEQSKDQMEKEMLEKI 422
Cdd:PTZ00121 1397 KKKAEEDKKKAdELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEakkADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 423 GKLEKELENVNDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYvETQDQLLLEKLENKRinkYLDEI 502
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE-EAKKADEAKKAEEKK---KADEL 1551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 503 VKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIRVLLME 582
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE 1631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 583 LEEARGNHVIRDEEVSSADISSSSEviSQHLVSYRNIEELQQQNQRLLVALR-----ELGETREREEQETTSSKITELQL 657
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAE--EENKIKAAEEAKKAEEDKKKAEEAKkaeedEKKAAEALKKEAEEAKKAEELKK 1709
|
490 500 510
....*....|....*....|....*....|.
gi 966923050 658 KLESALTELEQLRKSRQHQMQLVDSIVRQRD 688
Cdd:PTZ00121 1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
747-1296 |
5.03e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 5.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 747 ALKQLQEIFENYKKEKAENEKIQnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLT 826
Cdd:PRK03918 163 AYKNLGEVIKEIKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 827 AT---TQKQEQIINTMTQDLRGANEKLAVAEVRAENL-KKEKEMLKLSE-----VRLSQQRESLLAEQRGQNLLLTNL-Q 896
Cdd:PRK03918 242 ELekeLESLEGSKRKLEEKIRELEERIEELKKEIEELeEKVKELKELKEkaeeyIKLSEFYEEYLDELREIEKRLSRLeE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 897 TIQGILER-SETETKqrlSSQIEKLEHEISHLKKKLgNEVEQRHTL---TRNLDVQLLDTKRQLDTETNLHLNTK-ELFK 971
Cdd:PRK03918 322 EINGIEERiKELEEK---EERLEELKKKLKELEKRL-EELEERHELyeeAKAKKEELERLKKRLTGLTPEKLEKElEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 972 NAQKEIATLKQHLSNMEVQLASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEES 1051
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1052 LNKEKQVTEEVRKNIE--VRLKESAEFQTQLEKKLMEVEKEKQElqdDKRRAIESMEQQLSELKKTLSSVQNEVQ--EAL 1127
Cdd:PRK03918 478 LRKELRELEKVLKKESelIKLKELAEQLKELEEKLKKYNLEELE---KKAEEYEKLKEKLIKLKGEIKSLKKELEklEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1128 QRASTALSNE-QQARRDCQEQAKIAVEAQNKYERELmlhAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKAS 1206
Cdd:PRK03918 555 KKKLAELEKKlDELEEELAELLKELEELGFESVEEL---EERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKA 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1207 WEERERMLKDeVSKCVCRCEDLEKqnKLLHDQIEKLSDKVVASVKEgvQGPLNVSLSEEGKSQEQILEILRFIRREK-EI 1285
Cdd:PRK03918 632 FEELAETEKR-LEELRKELEELEK--KYSEEEYEELREEYLELSRE--LAGLRAELEELEKRREEIKKTLEKLKEELeER 706
|
570
....*....|.
gi 966923050 1286 AETRFEVAQVE 1296
Cdd:PRK03918 707 EKAKKELEKLE 717
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
499-1112 |
5.43e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 5.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 499 LDEIVKEVEAKAPILKRQREEYERAQ--------KAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIK 570
Cdd:COG1196 191 LEDILGELERQLEPLERQAEKAERYRelkeelkeLEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 571 DLSQQIRVLLMELEEARGNHVIRDEEVSSADissssevisqhlvsyRNIEELQQQNQRLLVALRELgetrereeqettSS 650
Cdd:COG1196 271 ELRLELEELELELEEAQAEEYELLAELARLE---------------QDIARLEERRRELEERLEEL------------EE 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 651 KITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQTTGVAIPLHASSLDDISLASTPKRPSTSQTvstp 730
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA---- 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 731 apvpvIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEG 810
Cdd:COG1196 400 -----AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 811 YRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVR------AENLKKEKEMLKLSEVRLS-----QQRE 879
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglagavAVLIGVEAAYEAALEAALAaalqnIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 880 SLLAEQRGQNLLLTNLQTIQGILErsetETKQRLSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTE 959
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLP----LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 960 TNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVE 1039
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966923050 1040 QYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQddkrRAIESMEQQLSEL 1112
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELE----RELERLEREIEAL 779
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
892-1646 |
6.93e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 58.31 E-value: 6.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 892 LTNLQTIQGIL-ERSETETKQRLSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNlhlNTKELF 970
Cdd:pfam12128 227 IRDIQAIAGIMkIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDD---QWKEKR 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 971 KNAQKEIATLKQHLSNMEVQLASQSSQRtGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKtstsnveqyramvtSLEE 1050
Cdd:pfam12128 304 DELNGELSAADAAVAKDRSELEALEDQH-GAFLDADIETAAADQEQLPSWQSELENLEERLK--------------ALTG 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1051 SLNKEKQVTEEVRKNIEVRLK-ESAEFQTQLEKKLMEVEKEKQELQDDkrraiesMEQQLSELKKTLSSVQNEVQEALQR 1129
Cdd:pfam12128 369 KHQDVTAKYNRRRSKIKEQNNrDIAGIKDKLAKIREARDRQLAVAEDD-------LQALESELREQLEAGKLEFNEEEYR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1130 ASTALSNEQ------QARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMasvRQHLEETTQKAESQLLEC 1203
Cdd:pfam12128 442 LKSRLGELKlrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKR---RDQASEALRQASRRLEER 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1204 KASWEERERMLKDEVSKCVcrcEDLEKQNKLLHDQIEKlsdkvVASVKEGVQGPLNVSLSEEGKSQEQILEILrfirrek 1283
Cdd:pfam12128 519 QSALDELELQLFPQAGTLL---HFLRKEAPDWEQSIGK-----VISPELLHRTDLDPEVWDGSVGGELNLYGV------- 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1284 eiaetRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQ-HEELMKKTETMNVVMETNKMLREEKERL 1362
Cdd:pfam12128 584 -----KLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQaNGELEKASREETFARTALKNARLDLRRL 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1363 EQDLQQMQAKVRKleldilPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVhtk 1442
Cdd:pfam12128 659 FDEKQSEKDKKNK------ALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDA--- 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1443 riqqlteEIGRLKAEIARSNASLTNNQNLIQS-LKEDLNKVRTEKETIQKdLDAKIIDIQEKVKTITQVKKIGRRYKTQY 1521
Cdd:pfam12128 730 -------QLALLKAAIAARRSGAKAELKALETwYKRDLASLGVDPDVIAK-LKREIRTLERKIERIAVRRQEVLRYFDWY 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1522 EELKAQQDKVMETsaQSSGDHQEQHVLVQEMQELKEtlnQAETKSKSLESQVENLQKTLSEKETEARNLQEqtvqLQSEL 1601
Cdd:pfam12128 802 QETWLQRRPRLAT--QLSNIERAISELQQQLARLIA---DTKLRRAKLEMERKASEKQQVRLSENLRGLRC----EMSKL 872
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 966923050 1602 SRLRQDLQDRTTQEE--QLRQQITEKEEKTRKAIVAAKSKIAHLAGV 1646
Cdd:pfam12128 873 ATLKEDANSEQAQGSigERLAQLEDLKLKRDYLSESVKKYVEHFKNV 919
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
742-1697 |
8.33e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.88 E-value: 8.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 742 IEAKAALKQLQEIFENYKKEKAENEKIQNEQ------LEKLQEQVTDLRSQNTKI--------------STQLDFASKRY 801
Cdd:pfam01576 96 NEKKKMQQHIQDLEEQLDEEEAARQKLQLEKvtteakIKKLEEDILLLEDQNSKLskerklleerisefTSNLAEEEEKA 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 802 EMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLA-----VAEVRAENLKKEKEmlklsevrlsq 876
Cdd:pfam01576 176 KSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAelqaqIAELRAQLAKKEEE----------- 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 877 qresllaeqrgqnllltnlqtIQGILERSETETKQRLSSQ--IEKLEHEISHLKKKLGNEVEQRHTLT---RNLDVQLLD 951
Cdd:pfam01576 245 ---------------------LQAALARLEEETAQKNNALkkIRELEAQISELQEDLESERAARNKAEkqrRDLGEELEA 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 952 TKRQLDTETNLHLNTKELFKNAQKEIATLKQHLS----NMEVQLASQSSQRTgkgqpsnkEDVDDLVSQLrqteEQVNDL 1027
Cdd:pfam01576 304 LKTELEDTLDTTAAQQELRSKREQEVTELKKALEeetrSHEAQLQEMRQKHT--------QALEELTEQL----EQAKRN 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1028 KERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKEsaefqtqLEKKLMEVEKEKQELQDDKRR------- 1100
Cdd:pfam01576 372 KANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQE-------LQARLSESERQRAELAEKLSKlqseles 444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1101 ---AIESMEQQLSELKKTLSSVQNE---VQEALQRA-------STALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAA 1167
Cdd:pfam01576 445 vssLLNEAEGKNIKLSKDVSSLESQlqdTQELLQEEtrqklnlSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQA 524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1168 dveALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERmlkdevskcvcRCEDLEKQNKLLHDQIEKLsdkvv 1247
Cdd:pfam01576 525 ---QLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAA-----------AYDKLEKTKNRLQQELDDL----- 585
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1248 aSVKEGVQGPLNVSLSEEGKSQEQILeilrfirrekeiAETRFEVAQVESLRYRqrvellerelqelqdslnAEREKVQV 1327
Cdd:pfam01576 586 -LVDLDHQRQLVSNLEKKQKKFDQML------------AEEKAISARYAEERDR------------------AEAEAREK 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1328 TAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEED 1407
Cdd:pfam01576 635 ETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQATEDA 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1408 VKRWKARNQHLVSQQKdpdteeyRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKE 1487
Cdd:pfam01576 715 KLRLEVNMQALKAQFE-------RDLQARDEQGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQID 787
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1488 TIQKDLDakiidiqEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSgdhQEQHVLVQEMQELKETLNQAETKSK 1567
Cdd:pfam01576 788 AANKGRE-------EAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESE---KKLKNLEAELLQLQEDLAASERARR 857
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1568 SLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLR---QQITEKEEKTRKAIVAAKSKIAHLA 1644
Cdd:pfam01576 858 QAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNdrlRKSTLQVEQLTTELAAERSTSQKSE 937
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|....
gi 966923050 1645 GVKDQLTKENEELKQRNGALDQQ-KDELDVRITALKSQYEGRISRLERELREHQ 1697
Cdd:pfam01576 938 SARQQLERQNKELKAKLQEMEGTvKSKFKSSIAALEAKIAQLEEQLEQESRERQ 991
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1444-1720 |
9.28e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 9.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1444 IQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEE 1523
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSN 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1524 LKAqqdkvmetsaqssgdhqeqhvLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSR 1603
Cdd:TIGR04523 206 LKK---------------------KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1604 LRQDLQDRTTQEEQLRQQITEKEEKTRKaivaAKSKIAHLAGVKDQ-LTKE-NEELKQRNGALDQQKDELDvRITALKSQ 1681
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQ----LKSEISDLNNQKEQdWNKElKSELKNQEKKLEEIQNQIS-QNNKIISQ 339
|
250 260 270
....*....|....*....|....*....|....*....
gi 966923050 1682 YEGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQ 1720
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE 378
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
743-1122 |
1.36e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.95 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 743 EAKAALKQLQEIFENYKKEKAENEKI---QNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLH 819
Cdd:TIGR04523 311 ELKSELKNQEKKLEEIQNQISQNNKIisqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 820 ERNQKLTATTQKQEQIintmtqdlrgaNEKLavaEVRAENLKKEKEMLklsevrlsqqresllaEQRGQNLLLTNLQtiq 899
Cdd:TIGR04523 391 SQINDLESKIQNQEKL-----------NQQK---DEQIKKLQQEKELL----------------EKEIERLKETIIK--- 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 900 gilersetetkqrLSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDTKRqldTETNLHLNTKELfKNAQKEIAT 979
Cdd:TIGR04523 438 -------------NNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINK---IKQNLEQKQKEL-KSKEKELKK 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 980 LKQHLSNMEVQLASQSSQrtgkgQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQyramvTSLEESLNKEKQVT 1059
Cdd:TIGR04523 501 LNEEKKELEEKVKDLTKK-----ISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-----ENLEKEIDEKNKEI 570
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966923050 1060 EEVRKNIEVRLKEsaefQTQLEKKLMEVEKEKQELqddkRRAIESMEQQLSELKKTLSSVQNE 1122
Cdd:TIGR04523 571 EELKQTQKSLKKK----QEEKQELIDQKEKEKKDL----IKEIEEKEKKISSLEKELEKAKKE 625
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1550-1699 |
1.41e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 54.93 E-value: 1.41e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1550 QEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLR--QDLQDRTTQEEQLRQQITEKEE 1627
Cdd:COG1579 31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnKEYEALQKEIESLKRRISDLED 110
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923050 1628 KTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQER 1699
Cdd:COG1579 111 EILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPELLALYER 182
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
890-1133 |
2.37e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 2.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 890 LLLTNLQTIQGILERSETETKQRLSSQIEKLEHEISHLKKKLGNEVEQRhtltRNLDVQLLDTKRQL-DTETNLHLNTKE 968
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL----AALERRIAALARRIrALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 969 LfKNAQKEIATLKQHLSNMEVQLASQ--SSQRTGKGQPS----NKEDVDDLVSQLRQTEEQVNDLKERLKTstsnVEQYR 1042
Cdd:COG4942 85 L-AELEKEIAELRAELEAQKEELAELlrALYRLGRQPPLalllSPEDFLDAVRRLQYLKYLAPARREQAEE----LRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1043 AMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQddkrRAIESMEQQLSELKKTLSSVQNE 1122
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEAE 235
|
250
....*....|.
gi 966923050 1123 VQEALQRASTA 1133
Cdd:COG4942 236 AAAAAERTPAA 246
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
108-571 |
3.37e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.88 E-value: 3.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 108 QQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKALTE--KNKELEIAQDRNIAI 185
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKfkNNKEVELEELKKILA 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 186 QsqftrtKEELEAEKRDLirtnERLSQELEYSTEDVKRLNEKlKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKEL 265
Cdd:pfam05483 416 E------DEKLLDEKKQF----EKIAEELKGKEQELIFLLQA-REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEK 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 266 LHsqntwlNTELKTKTDELL----ALGREKGNEILELKCNLE---NKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLK 338
Cdd:pfam05483 485 LK------NIELTAHCDKLLlenkELTQEASDMTLELKKHQEdiiNCKKQEERMLKQIENLEEKEMNLRDELESVREEFI 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 339 EAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKAIQDHllEVEQSKDQMEKEM 418
Cdd:pfam05483 559 QKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK--GSAENKQLNAYEI 636
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 419 leKIGKLEKELENVN----DLLSATKRKGAI--LSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLEN 492
Cdd:pfam05483 637 --KVNKLELELASAKqkfeEIIDNYQKEIEDkkISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKH 714
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966923050 493 KrinkyLDEIVKEVEAKAPILKRQREEYERAQkavASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKD 571
Cdd:pfam05483 715 Q-----YDKIIEERDSELGLYKNKEQEQSSAK---AALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
856-1697 |
4.25e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 4.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 856 RAENLKKEKEMLKLSEVRLS--QQRESLLAEQRgqNLLLTNLQTIQGILERSEtETKQRLSSQIEKLEHEISHLKKKLGN 933
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKelEKKHQQLCEEK--NALQEQLQAETELCAEAE-EMRARLAARKQELEEILHELESRLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 934 EVE---QRHTLTRNLDVQLLDTKRQLDTETNLHlntkelfKNAQKEIATLKQHLSNMEVQLASQSSQRT--GKGQPSNKE 1008
Cdd:pfam01576 87 EEErsqQLQNEKKKMQQHIQDLEEQLDEEEAAR-------QKLQLEKVTTEAKIKKLEEDILLLEDQNSklSKERKLLEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1009 DVDDLVSQLRQTEEQVNDLkERLKTstsnveQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKES-------AEFQTQLE 1081
Cdd:pfam01576 160 RISEFTSNLAEEEEKAKSL-SKLKN------KHEAMISDLEERLKKEEKGRQELEKAKRKLEGEStdlqeqiAELQAQIA 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1082 KKLMEVEKEKQELQDDKRRAIESMEQQLSELKKT--LSSVQNEVQEALQRASTALSNEQQARRDCQEQ------------ 1147
Cdd:pfam01576 233 ELRAQLAKKEEELQAALARLEEETAQKNNALKKIreLEAQISELQEDLESERAARNKAEKQRRDLGEElealkteledtl 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1148 --AKIAVEAQNKYERELML-----------HAADV--------EALQAAKEQVSKMASVRQHLEETTQKAESQLLE---- 1202
Cdd:pfam01576 313 dtTAAQQELRSKREQEVTElkkaleeetrsHEAQLqemrqkhtQALEELTEQLEQAKRNKANLEKAKQALESENAElqae 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1203 ------CKASWEERERMLKDEVSKCVCRCEDLEKQNKLLHDQIEKLSDKVvasvkEGVQGPLNVSLSEEGKSQEQILEIL 1276
Cdd:pfam01576 393 lrtlqqAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSEL-----ESVSSLLNEAEGKNIKLSKDVSSLE 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1277 RFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVM----ETN 1352
Cdd:pfam01576 468 SQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLealeEGK 547
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1353 KMLREEKERLEQDLQQMQAKVRKLELDILPLQEanaELSEKSGMLQAEKKLLEEDVKRWKARNQHL-----VSQQKDPDT 1427
Cdd:pfam01576 548 KRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQ---ELDDLLVDLDHQRQLVSNLEKKQKKFDQMLaeekaISARYAEER 624
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1428 EEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTI 1507
Cdd:pfam01576 625 DRAEAEAREKETRALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKTQLEEL 704
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1508 T---QVKKIGR-RYKTQYEELKAQQDKvmETSAQSSGDHQEQHVLVQEMQELKETLN--------------QAETKSKSL 1569
Cdd:pfam01576 705 EdelQATEDAKlRLEVNMQALKAQFER--DLQARDEQGEEKRRQLVKQVRELEAELEderkqraqavaakkKLELDLKEL 782
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1570 ESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQlrqqiTEKEEKTRKA-IVAAKSKIAHLAGVKD 1648
Cdd:pfam01576 783 EAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKE-----SEKKLKNLEAeLLQLQEDLAASERARR 857
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|.
gi 966923050 1649 QLTKENEELKQR--NGALDQQKDELDvritalKSQYEGRISRLERELREHQ 1697
Cdd:pfam01576 858 QAQQERDELADEiaSGASGKSALQDE------KRRLEARIAQLEEELEEEQ 902
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
89-1655 |
4.75e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 55.83 E-value: 4.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 89 ELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFKVESEQ----QYF-EIEKRLSHSQERLVNETREcqslrlELEKLSN 163
Cdd:TIGR01612 956 ESNLIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNneliKYFnDLKANLGKNKENMLYHQFD------EKEKATN 1029
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 164 QLKALTEK-NKELEiaqDRNIAIQSQFTRTKEELEAE-KRDLIRTNERLSQELEYSTEDVKRLNEKLKESNTT---KGEL 238
Cdd:TIGR01612 1030 DIEQKIEDaNKNIP---NIEIAIHTSIYNIIDEIEKEiGKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDdfgKEEN 1106
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 239 QLKLDELQASDVSVKYREKRLEQEKELLhsqntwlnTELKTKTDELLALGREKGNEiLELKCNLENKKEEVSRLEEQMNG 318
Cdd:TIGR01612 1107 IKYADEINKIKDDIKNLDQKIDHHIKAL--------EEIKKKSENYIDEIKAQIND-LEDVADKAISNDDPEEIEKKIEN 1177
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 319 LKTS---NEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGE 395
Cdd:TIGR01612 1178 IVTKidkKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKE 1257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 396 ANKAIQdhlleveqskDQMEKEMLEKigkleKELENVNdLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELY 475
Cdd:TIGR01612 1258 KSPEIE----------NEMGIEMDIK-----AEMETFN-ISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDIN 1321
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 476 NAYVETQDQLLLEKLENKRINKYLDEI-----------VKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRL 544
Cdd:TIGR01612 1322 DIKKELQKNLLDAQKHNSDINLYLNEIaniynilklnkIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINL 1401
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 545 QEdtDKANKQSSVLERDNQRMEIQIKDLSQQI-------------------RVLL----MELEEARGNHVIRDE------ 595
Cdd:TIGR01612 1402 EE--CKSKIESTLDDKDIDECIKKIKELKNHIlseesnidtyfknadenneNVLLlfknIEMADNKSQHILKIKkdnatn 1479
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 596 ----------EVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALR---ELGETREREEQETTSSKI------TELQ 656
Cdd:TIGR01612 1480 dhdfninelkEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTELLNkysALAIKNKFAKTKKDSEIIikeikdAHKK 1559
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 657 LKLESALTElEQLRKSRQHQMQLVDSIVRQRDMYRILLSQTTGVAiPLHASSLdDISLASTPKRPSTSQTVSTPAPVPVI 736
Cdd:TIGR01612 1560 FILEAEKSE-QKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLE-NFENKFL-KISDIKKKINDCLKETESIEKKISSF 1636
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 737 ----ESTEAIEAKAALKQLQEIFENYKKEKaenekiqnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMlqdnveGYR 812
Cdd:TIGR01612 1637 sidsQDTELKENGDNLNSLQEFLESLKDQK--------KNIEDKKKELDELDSEIEKIEIDVDQHKKNYEI------GII 1702
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 813 REITSLHERNQ-KLTATTQKQEQIINTM-----TQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRL----SQQRESLL 882
Cdd:TIGR01612 1703 EKIKEIAIANKeEIESIKELIEPTIENLissfnTNDLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAgcleTVSKEPIT 1782
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 883 AEQ------RGQNLLLTNLQtiqgilerSETETKQRLSS-QIEKLEHEISHLKKKLGNEVeqrhtltrnldvqlldtkrq 955
Cdd:TIGR01612 1783 YDEikntriNAQNEFLKIIE--------IEKKSKSYLDDiEAKEFDRIINHFKKKLDHVN-------------------- 1834
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 956 lDTETNLHLNTKELFKNAQKEIATLKQH-----LSNMEVQLASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKEr 1030
Cdd:TIGR01612 1835 -DKFTKEYSKINEGFDDISKSIENVKNStdenlLFDILNKTKDAYAGIIGKKYYSYKDEAEKIFINISKLANSINIQIQ- 1912
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1031 lktSTSNVEQYRAMVTSLEESLNKEKQVT------EEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQE---LQDDKRRA 1101
Cdd:TIGR01612 1913 ---NNSGIDLFDNINIAILSSLDSEKEDTlkfipsPEKEPEIYTKIRDSYDTLLDIFKKSQDLHKKEQDtlnIIFENQQL 1989
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1102 IESMeQQLSELKKTLSSVQ-------NEVQEALQRAS-----TALSNEQQARRDCQEQAKIAvEAQNKYERELMLHAADV 1169
Cdd:TIGR01612 1990 YEKI-QASNELKDTLSDLKykkekilNDVKLLLHKFDelnklSCDSQNYDTILELSKQDKIK-EKIDNYEKEKEKFGIDF 2067
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1170 EaLQAAKEQVSKMASVRQHLEETTQKAESQLLEckaSWEERERMLKDEvskcvcrcEDLEKQNKLLHDQIEKLSDKVVAs 1249
Cdd:TIGR01612 2068 D-VKAMEEKFDNDIKDIEKFENNYKHSEKDNHD---FSEEKDNIIQSK--------KKLKELTEAFNTEIKIIEDKIIE- 2134
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1250 vKEGVQGPLN-----------VSLSEEGKSqeQILEILRFIRREKEIAETRFEVAQVESlryrqrvellerelqelqDSL 1318
Cdd:TIGR01612 2135 -KNDLIDKLIemrkecllfsyATLVETLKS--KVINHSEFITSAAKFSKDFFEFIEDIS------------------DSL 2193
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1319 NAEREKVQvTAKTMAQHEELMkKTETMNVVMETNKMLREEKERLEQ----------DLQQMQAKVrkLELDILPLQEANA 1388
Cdd:TIGR01612 2194 NDDIDALQ-IKYNLNQTKKHM-ISILADATKDHNNLIEKEKEATKIinnltelftiDFNNADADI--LHNNKIQIIYFNS 2269
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1389 ELsEKSgmLQAEKKLLEEdVKRWKARNQHL-------VSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARS 1461
Cdd:TIGR01612 2270 EL-HKS--IESIKKLYKK-INAFKLLNISHinekyfdISKEFDNIIQLQKHKLTENLNDLKEIDQYISDKKNIFLHALNE 2345
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1462 NASLtnNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQV-KKIGR--RYKTQYEelkaQQDKVMETSAQs 1538
Cdd:TIGR01612 2346 NTNF--NFNALKEIYDDIINRENKADEIENINNKENENIMQYIDTITKLtEKIQDilIFVTTYE----NDNNIIKQHIQ- 2418
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1539 sgDHQEQHV------LVQEMQELKETLNQA-ETKSKSL-ESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQD 1610
Cdd:TIGR01612 2419 --DNDENDVskikdnLKKTIQSFQEILNKIdEIKAQFYgGNNINNIIITISQNANDVKNHFSKDLTIENELIQIQKRLED 2496
|
1690 1700 1710 1720
....*....|....*....|....*....|....*....|....*.
gi 966923050 1611 -RTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGvKDQLTKENE 1655
Cdd:TIGR01612 2497 iKNAAHEIRSEQITKYTNAIHNHIEEQFKKIENNSN-KDEVYKINE 2541
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
891-1637 |
5.19e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.41 E-value: 5.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 891 LLTNLQTIQGILERSETETKQRLSSQIEKLEHeishlKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELF 970
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEK-----INNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 971 KNAQKEIATLKQHLSNMEVQLAsqssqrtgkgqpSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEE 1050
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKK------------ENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1051 SLNKEKQVTEEVRKNIEVR------LKESAEFQTQLEKKLMEVEKEKQELQDDkrraIESMEQQLSELKKTLSSVQNEVQ 1124
Cdd:TIGR04523 181 EKLNIQKNIDKIKNKLLKLelllsnLKKKIQKNKSLESQISELKKQNNQLKDN----IEKKQQEINEKTTEISNTQTQLN 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1125 EalqrastaLSNEQQARRDCQEQAKIAVEAQNKYERELMlhaadvEALQAAKEQVSKMASVRQhlEETTQKAESQLleck 1204
Cdd:TIGR04523 257 Q--------LKDEQNKIKKQLSEKQKELEQNNKKIKELE------KQLNQLKSEISDLNNQKE--QDWNKELKSEL---- 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1205 ASWEERERMLKDEVSKCvcrcedlEKQNKLLHDQIEKLSDKVVASVKEgvqgplNVSLSEEGKSQEQILEILrfirrEKE 1284
Cdd:TIGR04523 317 KNQEKKLEEIQNQISQN-------NKIISQLNEQISQLKKELTNSESE------NSEKQRELEEKQNEIEKL-----KKE 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1285 IAETRFEVAQVESlryrqrvellerelqelqdSLNAEREKVQVTAKTMAQHEELMKKtetmnvvmetnkmLREEKERLEQ 1364
Cdd:TIGR04523 379 NQSYKQEIKNLES-------------------QINDLESKIQNQEKLNQQKDEQIKK-------------LQQEKELLEK 426
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1365 DLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKArnqhlvsqqkdpdteEYRKLLSEKEVHTKRI 1444
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSR---------------SINKIKQNLEQKQKEL 491
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1445 QQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKdldaKIIDIQEKVKTITQVKKigrryKTQYEEL 1524
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES----KISDLEDELNKDDFELK-----KENLEKE 562
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1525 KAQQDKVMETSaqssgdHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRL 1604
Cdd:TIGR04523 563 IDEKNKEIEEL------KQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI 636
|
730 740 750
....*....|....*....|....*....|...
gi 966923050 1605 RQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAK 1637
Cdd:TIGR04523 637 KSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIK 669
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1319-1721 |
5.25e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 5.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1319 NAEREKVQVTAKTMAQHEEL-----MKKTETMNVVMETNKMLREEKERLeqdlQQMQAKVRKLELDILPLQEANAELSEK 1393
Cdd:pfam01576 43 NALQEQLQAETELCAEAEEMrarlaARKQELEEILHELESRLEEEEERS----QQLQNEKKKMQQHIQDLEEQLDEEEAA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1394 SGMLQAEKKLLEEDVKRWKARNQHLVSQQKdpdteeyrKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQ 1473
Cdd:pfam01576 119 RQKLQLEKVTTEAKIKKLEEDILLLEDQNS--------KLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMIS 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1474 SLKEDLN---KVRTEKETIQKDLDAKIIDIQEKVKTI-TQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLV 1549
Cdd:pfam01576 191 DLEERLKkeeKGRQELEKAKRKLEGESTDLQEQIAELqAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELE 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1550 QEMQELKETL-------NQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRT----TQEEQL 1618
Cdd:pfam01576 271 AQISELQEDLeseraarNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETrsheAQLQEM 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1619 RQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELdvritalksqyEGRISRLERELREHQE 1698
Cdd:pfam01576 351 RQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDS-----------EHKRKKLEGQLQELQA 419
|
410 420
....*....|....*....|...
gi 966923050 1699 RHLEQRDEPQEPSNKVPEQQRQI 1721
Cdd:pfam01576 420 RLSESERQRAELAEKLSKLQSEL 442
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
756-1503 |
6.00e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 55.11 E-value: 6.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 756 ENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTAttqKQEQI 835
Cdd:pfam05483 63 EGLKDSDFENSEGLSRLYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSL---KLEEE 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 836 INTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQRLSS 915
Cdd:pfam05483 140 IQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKE 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 916 QIEKLEHEISHLKKKLGNEVEQRHTLTrnldVQLLDTKRQLDTETNL---------HLNTKELFKNAQKEIATLKQHLSN 986
Cdd:pfam05483 220 DHEKIQHLEEEYKKEINDKEKQVSLLL----IQITEKENKMKDLTFLleesrdkanQLEEKTKLQDENLKELIEKKDHLT 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 987 MEVQLASQSSQRTGKGQPSNKEDVDDLVSQLRQ-TEEQVNDLKERLKTSTSN---VEQYRAMVTSLEESLNKEKQVTEEV 1062
Cdd:pfam05483 296 KELEDIKMSLQRSMSTQKALEEDLQIATKTICQlTEEKEAQMEELNKAKAAHsfvVTEFEATTCSLEELLRTEQQRLEKN 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1063 rknievrlkesaefQTQLEKKLMEVEKEKQELQDdkrraiesmeqqlselkktLSSVQNEVQEALQRASTALSNEQQARR 1142
Cdd:pfam05483 376 --------------EDQLKIITMELQKKSSELEE-------------------MTKFKNNKEVELEELKKILAEDEKLLD 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1143 DCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLleckasweERERMLKDEVSKcv 1222
Cdd:pfam05483 423 EKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEL--------EKEKLKNIELTA-- 492
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1223 cRCEDLEKQNKLLhdqIEKLSDKVVASVKEgvqgplNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQ 1302
Cdd:pfam05483 493 -HCDKLLLENKEL---TQEASDMTLELKKH------QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGD 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1303 RVELLERELQELQDSLNAEREKVQVTAKTMAQH-----EELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLE 1377
Cdd:pfam05483 563 EVKCKLDKSEENARSIEYEVLKKEKQMKILENKcnnlkKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLE 642
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1378 LDILPLQEANAELSEKSGMLQAEKKLLEE----DVKRWKARNQHLVSQQKDPDTEEYRKL-----LSEKEVHT--KRIQQ 1446
Cdd:pfam05483 643 LELASAKQKFEEIIDNYQKEIEDKKISEEklleEVEKAKAIADEAVKLQKEIDKRCQHKIaemvaLMEKHKHQydKIIEE 722
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966923050 1447 LTEEIGRLKAEIARSNA-------SLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEK 1503
Cdd:pfam05483 723 RDSELGLYKNKEQEQSSakaaleiELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
486-1406 |
6.07e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 6.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 486 LLEKLENKRINkyLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQrlqedtdKANKQSSVLERDNQRM 565
Cdd:pfam02463 178 LIEETENLAEL--IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYL-------KLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 566 EIQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISqhlvsyrniEELQQQNQRLLVALRElgetrereeq 645
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAK---------EEEELKSELLKLERRK---------- 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 646 ETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRdmyrillsqttgvaiplhasslddislastpkrpstsq 725
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKR-------------------------------------- 351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 726 tvstpapvpvIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLq 805
Cdd:pfam02463 352 ----------EAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDL- 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 806 dnvegyrreitslhernQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQ 885
Cdd:pfam02463 421 -----------------LKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQ 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 886 RGQNLLLT----NLQTIQGILERSETETKQRLSSQIEKLEH-EISHLKKKLGNEVE-QRHTLTRNLDVQLLDTKRQLDTE 959
Cdd:pfam02463 484 EQLELLLSrqklEERSQKESKARSGLKVLLALIKDGVGGRIiSAHGRLGDLGVAVEnYKVAISTAVIVEVSATADEVEER 563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 960 TNLHLNTKELFKNAQKEIaTLKQHLSNMEVQLASQSSQRTgkgQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVE 1039
Cdd:pfam02463 564 QKLVRALTELPLGARKLR-LLIPKLKLPLKSIAVLEIDPI---LNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKE 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1040 QYRAMVTSLEESLNKEKQVTEEVRKNIEVRL--KESAEFQTQLEKKLMEVEKEKQELQDDKrraIESMEQQLSELKKTLS 1117
Cdd:pfam02463 640 SAKAKESGLRKGVSLEEGLAEKSEVKASLSEltKELLEIQELQEKAESELAKEEILRRQLE---IKKKEQREKEELKKLK 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1118 SVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELmlhaadVEALQAAKEQVSKMASVRQhLEETTQKAE 1197
Cdd:pfam02463 717 LEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEE------KEEEKSELSLKEKELAEER-EKTEKLKVE 789
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1198 SQLLECKASWEERERMLKDEVSKCVCRCE-DLEKQNKLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEIL 1276
Cdd:pfam02463 790 EEKEEKLKAQEEELRALEEELKEEAELLEeEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL 869
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1277 RfIRREKEIAETRFEVAQVESLRYRqRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLR 1356
Cdd:pfam02463 870 Q-ELLLKEEELEEQKLKDELESKEE-KEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|
gi 966923050 1357 EEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEE 1406
Cdd:pfam02463 948 KEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEK 997
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
800-1406 |
6.20e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 6.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 800 RYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRE 879
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 880 SLLAEQRGQNLLLTNLqtiqgileRSETETKQRLSSQIEKLEHEISHLKKKLGnEVEQrhtltrnldvqlldtkrqLDTE 959
Cdd:PRK03918 239 EIEELEKELESLEGSK--------RKLEEKIRELEERIEELKKEIEELEEKVK-ELKE------------------LKEK 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 960 TNLHLNTKELFKNAQKEIATLKQHLSNMEVQLasQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLK------ERLKT 1033
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREIEKRLSRLEEEI--NGIEERIKELEEKEERLEELKKKLKELEKRLEELEerhelyEEAKA 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1034 STSNVEQYRAMVTSLE-ESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAI--------ES 1104
Cdd:PRK03918 370 KKEELERLKKRLTGLTpEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgrelteEH 449
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1105 MEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVE---AQNKYERELMLHAADVEALQAAKEQVSK 1181
Cdd:PRK03918 450 RKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkelAEQLKELEEKLKKYNLEELEKKAEEYEK 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1182 masvrqhLEETTQKAESQLLECKASWEeRERMLKDEVSKCVCRCEDLEKQNKLLHDQIEKLSDKVVASVKEgvqgplnvS 1261
Cdd:PRK03918 530 -------LKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEE--------R 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1262 LSEEGKSQEQILEiLRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQVT--AKTMAQHEELM 1339
Cdd:PRK03918 594 LKELEPFYNEYLE-LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEeyEELREEYLELS 672
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 1340 KKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEE 1406
Cdd:PRK03918 673 RELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1350-1641 |
6.84e-07 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 53.38 E-value: 6.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1350 ETNKMLREEKERLEQDLQQMQAKVRKLELDilpLQEANAELSEksgmLQAEKKLLEEDVKRWKARNQHLVsQQKDPDTEE 1429
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEK---RDELNEELKE----LAEKRDELNAQVKELREEAQELR-EKRDELNEK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1430 YRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASltnnqnliqslKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQ 1509
Cdd:COG1340 73 VKELKEERDELNEKLNELREELDELRKELAELNKA-----------GGSIDKLRKEIERLEWRQQTEVLSPEEEKELVEK 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1510 VKKIGRRYKTQYEELKaQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKtlseketEARN 1589
Cdd:COG1340 142 IKELEKELEKAKKALE-KNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRK-------EADE 213
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 966923050 1590 LQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIA 1641
Cdd:COG1340 214 LHKEIVEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEEL 265
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
101-349 |
6.99e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 6.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 101 LEKFLADQQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLvneTRECQSLRLELEKLSNQLKaltEKNKELEIAQD 180
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV---KEKIGELEAEIASLERSIA---EKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 181 RNIAIQSQFTRTKEELEAEKRDLIRTNERLSQ------ELEYSTED-VKRLNEKLKESNTTKGEL---QLKLDELQASDV 250
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKlteeyaELKEELEDlRAELEEVDKEFAETRDELkdyREKLEKLKREIN 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 251 SVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALG---REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQ 327
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEeekEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
|
250 260
....*....|....*....|..
gi 966923050 328 KHVEDLLTKLKEAKEQQASMEE 349
Cdd:TIGR02169 483 KELSKLQRELAEAEAQARASEE 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
89-432 |
7.05e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 7.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 89 ELNKLpKSVQNKLEKFLADQQSEIDGLKGRHEKFKVESEQqyfeIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKAL 168
Cdd:TIGR02169 689 ELSSL-QSELRRIENRLDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKEL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 169 TEK--NKELEIAQDRNiAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYSTEDvkrLNEKLKESNTTKGELQLKLDELQ 246
Cdd:TIGR02169 764 EARieELEEDLHKLEE-ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLRE---IEQKLNRLTLEKEYLEKEIQELQ 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 247 ASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNeileLKCNLENKKEEVSRLEEQMNGLKTSNEHL 326
Cdd:TIGR02169 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD----LKKERDELEAQLRELERKIEELEAQIEKK 915
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 327 QKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLyksaaDDSEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLE 406
Cdd:TIGR02169 916 RKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-----EDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDE 990
|
330 340
....*....|....*....|....*....
gi 966923050 407 VEQSKDQMEKE---MLEKIGKLEKELENV 432
Cdd:TIGR02169 991 LKEKRAKLEEErkaILERIEEYEKKKREV 1019
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
146-585 |
7.11e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 7.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 146 NETREcQSLRLELEKLSNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYSTEDVKRLN 225
Cdd:TIGR04523 31 QDTEE-KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKIN 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 226 EKLKESNTTKGELQLKLDELqasdvsvkyrEKRLEQEKELLhsqnTWLNTELKTKTDELLALGrEKGNEILELKCNLENK 305
Cdd:TIGR04523 110 SEIKNDKEQKNKLEVELNKL----------EKQKKENKKNI----DKFLTEIKKKEKELEKLN-NKYNDLKKQKEELENE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 306 KEEVSR--LEEQMNGLKTSNEHLQKHVedLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAV 383
Cdd:TIGR04523 175 LNLLEKekLNIQKNIDKIKNKLLKLEL--LLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 384 DELHKLLKEAGEANKAIQDHLLEVEQSKDQMeKEMLEKIGKLEKELENVN-------------DLLSATKRKGAILSE-- 448
Cdd:TIGR04523 253 TQLNQLKDEQNKIKKQLSEKQKELEQNNKKI-KELEKQLNQLKSEISDLNnqkeqdwnkelksELKNQEKKLEEIQNQis 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 449 EELAAMSPTAAAVAKIVKpgmKLTELYNAYVETQDQL-----LLEKLeNKRINKYLDEIvKEVEAKAPILKRQREEYERA 523
Cdd:TIGR04523 332 QNNKIISQLNEQISQLKK---ELTNSESENSEKQRELeekqnEIEKL-KKENQSYKQEI-KNLESQINDLESKIQNQEKL 406
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923050 524 ----QKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIRVLLMELEE 585
Cdd:TIGR04523 407 nqqkDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKV 472
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1269-1706 |
7.40e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 7.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1269 QEQILEILRFIRREKEIAETRFEVAQVEsLRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKtetmnvv 1348
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKELKELEEE-LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK------- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1349 METNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEanaelseksgmLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTE 1428
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERLEELEERLEELRE-----------LEEELEELEAELAELQEELEELLEQLSLATEE 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1429 EYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEdlnkvrtEKETIQKDLDAKIIDIqekvkTIT 1508
Cdd:COG4717 193 ELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL-------EERLKEARLLLLIAAA-----LLA 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1509 QVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEAR 1588
Cdd:COG4717 261 LLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1589 NLQEQTVQLQSELSRLRQDlqdrtTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQK 1668
Cdd:COG4717 341 ELLDRIEELQELLREAEEL-----EEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELL 415
|
410 420 430
....*....|....*....|....*....|....*....
gi 966923050 1669 DELDVRITAL-KSQYEGRISRLERELREHQERHLEQRDE 1706
Cdd:COG4717 416 GELEELLEALdEEELEEELEELEEELEELEEELEELREE 454
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1002-1613 |
1.14e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 54.14 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1002 GQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYramvTSLEESLNKEKQVTEEVRKNIEvrlkESAEFQTQLE 1081
Cdd:PRK01156 146 GDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNI----DYLEEKLKSSNLELENIKKQIA----DDEKSHSITL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1082 KKLMEVEKEKQELQDDKRRAIESMeQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERE 1161
Cdd:PRK01156 218 KEIERLSIEYNNAMDDYNNLKSAL-NELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNY 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1162 LMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAEsqllECKASWEERERMLKdevskcvcRCEDLEKQnkllHDQIEK 1241
Cdd:PRK01156 297 INDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLS----VLQKDYNDYIKKKS--------RYDDLNNQ----ILELEG 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1242 LSDKVVASVKEGVQgpLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAE 1321
Cdd:PRK01156 361 YEMDYNSYLKSIES--LKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALREN 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1322 REKVqvtaktmaqhEELMKKTETMNVVMETNKMLREEKER-----LEQDLQQMQAKVRKLELDILPLQEanaelsEKSGM 1396
Cdd:PRK01156 439 LDEL----------SRNMEMLNGQSVCPVCGTTLGEEKSNhiinhYNEKKSRLEEKIREIEIEVKDIDE------KIVDL 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1397 LQAEKKLLEEDVKRWKARNQHLVSQQKDPdTEEYRKLLSEKEVHTKrIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLK 1476
Cdd:PRK01156 503 KKRKEYLESEEINKSINEYNKIESARADL-EDIKIKINELKDKHDK-YEEIKNRYKSLKLEDLDSKRTSWLNALAVISLI 580
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1477 eDLNKVRTEKETIQKDL---------------------DAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETS 1535
Cdd:PRK01156 581 -DIETNRSRSNEIKKQLndlesrlqeieigfpddksyiDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQI 659
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966923050 1536 AQSSGdhqeqhvLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTT 1613
Cdd:PRK01156 660 AEIDS-------IIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
115-597 |
1.18e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.96 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 115 LKGRHEKFKVESEQQYFEI---EKRLSHSQERLVNETRECQSLRLELEKLSNQLKALTEKNKELEIAQDRNIAIQSQFTR 191
Cdd:pfam05483 217 LKEDHEKIQHLEEEYKKEIndkEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 192 TKEELEAEKRDLIRTNERLSQELEYSTEDVKRLNE----KLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLH 267
Cdd:pfam05483 297 ELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEekeaQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 268 SQNTWLNTELKTKTDELLALGREKGNEILELK----------------------------------CNLENKKEEVSRLE 313
Cdd:pfam05483 377 DQLKIITMELQKKSSELEEMTKFKNNKEVELEelkkilaedeklldekkqfekiaeelkgkeqeliFLLQAREKEIHDLE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 314 EQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQAsmeekfhnELNAHIKLSNLyksaaddseaksneltravdELHKLLKEA 393
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDLKTELEKEKLKNI--------ELTAHCDKLLL--------------------ENKELTQEA 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 394 GEANKAIQDHLLEVEQSKDQmEKEMLEKIGKLEKELENVNDLLSATkRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTE 473
Cdd:pfam05483 509 SDMTLELKKHQEDIINCKKQ-EERMLKQIENLEEKEMNLRDELESV-REEFIQKGDEVKCKLDKSEENARSIEYEVLKKE 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 474 LYNAYVETQDQLLLEKLENKriNKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQedtdkank 553
Cdd:pfam05483 587 KQMKILENKCNNLKKQIENK--NKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEII-------- 656
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 966923050 554 qssvlerDNQRMEIQIKDLSQQirVLLMELEEARgnhVIRDEEV 597
Cdd:pfam05483 657 -------DNYQKEIEDKKISEE--KLLEEVEKAK---AIADEAV 688
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1543-1690 |
1.41e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1543 QEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEA---------RNLQEQTVQLQSELSRLRQDLQDRTT 1613
Cdd:COG3206 212 EEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALpellqspviQQLRAQLAELEAELAELSARYTPNHP 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1614 QEEQLRQQI----TEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDV---RITALKSQYEGRI 1686
Cdd:COG3206 292 DVIALRAQIaalrAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRlerEVEVARELYESLL 371
|
....
gi 966923050 1687 SRLE 1690
Cdd:COG3206 372 QRLE 375
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1089-1709 |
1.62e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.57 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1089 KEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDC---QEQAKIAVEAQNKYERElmlh 1165
Cdd:pfam05483 102 KQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCnllKETCARSAEKTKKYEYE---- 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1166 aaDVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNKLLHDQIEKlsdk 1245
Cdd:pfam05483 178 --REETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITE---- 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1246 vvasvkegvqgplnvslseegksQEQILEILRFIrrekeIAETRFEVAQVESLRYRQrvELLERELQELQDSLNAEREKV 1325
Cdd:pfam05483 252 -----------------------KENKMKDLTFL-----LEESRDKANQLEEKTKLQ--DENLKELIEKKDHLTKELEDI 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1326 QVTAKTMAQHEELMKktETMNVVMETNKMLREEKErleqdlQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLE 1405
Cdd:pfam05483 302 KMSLQRSMSTQKALE--EDLQIATKTICQLTEEKE------AQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLE 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1406 EDVKRWKARNQHLvsQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTE 1485
Cdd:pfam05483 374 KNEDQLKIITMEL--QKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKE 451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1486 KETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSgdhQEQHVLVQEMQELKETLNQAETK 1565
Cdd:pfam05483 452 IHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELT---QEASDMTLELKKHQEDIINCKKQ 528
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1566 SKSLESQVENLQktlsEKETEARNLQEQtvqLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAG 1645
Cdd:pfam05483 529 EERMLKQIENLE----EKEMNLRDELES---VREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKK 601
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966923050 1646 VKDQLTKENEELKQRNGALDQQKDELDVRITAlksqYEGRISRLERELREHQERHLEQRDEPQE 1709
Cdd:pfam05483 602 QIENKNKNIEELHQENKALKKKGSAENKQLNA----YEIKVNKLELELASAKQKFEEIIDNYQK 661
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
749-1640 |
2.01e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 53.52 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 749 KQLQEIFENYK-KEKAENEKI-----QNEQLEKLQEQVTDLRSQ-NTKIS---TQLDFASKRYEMLQDNVEGYR------ 812
Cdd:TIGR01612 751 KDLNKILEDFKnKEKELSNKIndyakEKDELNKYKSKISEIKNHyNDQINidnIKDEDAKQNYDKSKEYIKTISikedei 830
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 813 -REITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLA------VAEVRAENLKKEKEMLKLSEVRLSQQRESLlaEQ 885
Cdd:TIGR01612 831 fKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAeltnkiKAEISDDKLNDYEKKFNDSKSLINEINKSI--EE 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 886 RGQNLllTNLQTIQGILE--RSETETKQRLSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTE-TNL 962
Cdd:TIGR01612 909 EYQNI--NTLKKVDEYIKicENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLIDKINELDKAfKDA 986
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 963 HLNTKELFKNAqkeiatLKQHLSNMEVQLASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNV-EQY 1041
Cdd:TIGR01612 987 SLNDYEAKNNE------LIKYFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNIiDEI 1060
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1042 RAMVTSLEESLNKEkqVTEEVRKNIEV--RLKESAE---FQTQLEKKLMEVEKEKQELQDDkrraIESMEQQ-------L 1109
Cdd:TIGR01612 1061 EKEIGKNIELLNKE--ILEEAEINITNfnEIKEKLKhynFDDFGKEENIKYADEINKIKDD----IKNLDQKidhhikaL 1134
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1110 SELKKTLSSVQNEVQEALQR----ASTALSNEQQARRDCQEQAKIAVEAQNKY----ERELMLHAADVEALQAAKEQVSK 1181
Cdd:TIGR01612 1135 EEIKKKSENYIDEIKAQINDledvADKAISNDDPEEIEKKIENIVTKIDKKKNiydeIKKLLNEIAEIEKDKTSLEEVKG 1214
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1182 M-ASVRQHL--------EETTQKAESQLLECKASWEERERMLKD--EVSKCVCRCEDLEKQNKLLHDQIEKLSDKVVASV 1250
Cdd:TIGR01612 1215 InLSYGKNLgklflekiDEEKKKSEHMIKAMEAYIEDLDEIKEKspEIENEMGIEMDIKAEMETFNISHDDDKDHHIISK 1294
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1251 KEgvqgplNVSLSEegkSQEQILEILRFIRREKEIAETRFEVAQ--VESLRYRQRVELLERELQELQDSLNAER-----E 1323
Cdd:TIGR01612 1295 KH------DENISD---IREKSLKIIEDFSEESDINDIKKELQKnlLDAQKHNSDINLYLNEIANIYNILKLNKikkiiD 1365
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1324 KVQVTAKTMAQHEELMK----KTETMNVVMETNKMLREEKERLE-----QDLQQMQAKVRKLELDILPLQEANAELSEKS 1394
Cdd:TIGR01612 1366 EVKEYTKEIEENNKNIKdeldKSEKLIKKIKDDINLEECKSKIEstlddKDIDECIKKIKELKNHILSEESNIDTYFKNA 1445
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1395 GMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSE-------------------------KEVHTKRIQQLTE 1449
Cdd:TIGR01612 1446 DENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINElkehidkskgckdeadknakaieknKELFEQYKKDVTE 1525
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1450 EIGRLKAEIARSNASLTNNQN--LIQSLKEDLNKVRTEKETIQ---KDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEEL 1524
Cdd:TIGR01612 1526 LLNKYSALAIKNKFAKTKKDSeiIIKEIKDAHKKFILEAEKSEqkiKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLENF 1605
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1525 KAQQDKVMETSAQSSGDHQEQHVLVQEMQELkeTLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQL---QSEL 1601
Cdd:TIGR01612 1606 ENKFLKISDIKKKINDCLKETESIEKKISSF--SIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELdelDSEI 1683
|
970 980 990 1000
....*....|....*....|....*....|....*....|
gi 966923050 1602 SRLRQDL-QDRTTQEEQLRQQITEKEEKTRKAIVAAKSKI 1640
Cdd:TIGR01612 1684 EKIEIDVdQHKKNYEIGIIEKIKEIAIANKEEIESIKELI 1723
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
738-1215 |
2.38e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 2.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 738 STEAIEAKaaLKQLQEIFENYKKEKAENEKIQNE--QLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREI 815
Cdd:PRK03918 253 SKRKLEEK--IRELEERIEELKKEIEELEEKVKElkELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 816 TSLHERNQKLTATTQKQEQI---INTMTQDLRgANEKLAVAEVRAENLKKEKEMLKLSEVrlsqQRESLLAEQRGQNLLl 892
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELekrLEELEERHE-LYEEAKAKKEELERLKKRLTGLTPEKL----EKELEELEKAKEEIE- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 893 tnlqtiqgiLERSE-TETKQRLSSQIEKLEHEISHLKKKLGN--------EVEQRHTLTRNLDVQLLDTKRQLDTETNLH 963
Cdd:PRK03918 405 ---------EEISKiTARIGELKKEIKELKKAIEELKKAKGKcpvcgrelTEEHRKELLEEYTAELKRIEKELKEIEEKE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 964 LNTKELFKNAQKEIATLKQHLSNMEvqLASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRA 1043
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLKE--LAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1044 MVTSLEEsLNKEKQVTEEVRKNIEVRLKESAefqtqlEKKLMEVEKEKQELQDDKRRAIE--SMEQQLSELKKTLSSVQN 1121
Cdd:PRK03918 554 LKKKLAE-LEKKLDELEEELAELLKELEELG------FESVEELEERLKELEPFYNEYLElkDAEKELEREEKELKKLEE 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1122 EVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAAdvEALQAAKEQVSKMASVRQHLEETTQKAESQLL 1201
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELS--RELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
490
....*....|....
gi 966923050 1202 ECKASWEERERMLK 1215
Cdd:PRK03918 705 EREKAKKELEKLEK 718
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1541-1717 |
2.43e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 51.08 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1541 DHQEQHVLVqEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQ 1620
Cdd:COG1579 2 MPEDLRALL-DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1621 QITEKeeKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQERH 1700
Cdd:COG1579 81 QLGNV--RNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
170
....*....|....*..
gi 966923050 1701 LEQRDEPQEPSNKVPEQ 1717
Cdd:COG1579 159 EELEAEREELAAKIPPE 175
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
747-1622 |
2.88e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.13 E-value: 2.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 747 ALKQLQEIFENYKKEKAENEkIQNEQLEKLQEQVTDLRSQNTKISTQLDFA---SKRYEMLQDNVEGYRREI----TSLH 819
Cdd:TIGR00606 187 ALETLRQVRQTQGQKVQEHQ-MELKYLKQYKEKACEIRDQITSKEAQLESSreiVKSYENELDPLKNRLKEIehnlSKIM 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 820 ERNQKLTA--TTQKQEQIINT-----MTQDLRGANEKL---------AVAEVRAENLKKEKEMLKLSEVR--LSQQRESL 881
Cdd:TIGR00606 266 KLDNEIKAlkSRKKQMEKDNSelelkMEKVFQGTDEQLndlyhnhqrTVREKERELVDCQRELEKLNKERrlLNQEKTEL 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 882 LAEQRGQNLLLTNLQtiQGILERSETETKQRLSSQIEKLEHEishlkKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETN 961
Cdd:TIGR00606 346 LVEQGRLQLQADRHQ--EHIRARDSLIQSLATRLELDGFERG-----PFSERQIKNFHTLVIERQEDEAKTAAQLCADLQ 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 962 LHLNTK-ELFKNAQKEIATLKQHLSNMEVQLASQSSQ-----RTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKErlktsT 1035
Cdd:TIGR00606 419 SKERLKqEQADEIRDEKKGLGRTIELKKEILEKKQEElkfviKELQQLEGSSDRILELDQELRKAERELSKAEK-----N 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1036 SNVEQYRAMVTSLE-ESLNKEKQVTEEVRKNIEvrLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQL----- 1109
Cdd:TIGR00606 494 SLTETLKKEVKSLQnEKADLDRKLRKLDQEMEQ--LNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfpn 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1110 -SELKKTLSSVQNEVQEALQRASTALSNEQQARrdcQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQvSKMASVRQH 1188
Cdd:TIGR00606 572 kKQLEDWLHSKSKEINQTRDRLAKLNKELASLE---QNKNHINNELESKEEQLSSYEDKLFDVCGSQDEE-SDLERLKEE 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1189 LEETTqKAESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNKLLHDQIEKLSDKVVASVKEgvQGPLNVSLSEEGKS 1268
Cdd:TIGR00606 648 IEKSS-KQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDK--LKSTESELKKKEKR 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1269 QEQILEILR-----FIRREKEIAETRFEVAQVEslRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTE 1343
Cdd:TIGR00606 725 RDEMLGLAPgrqsiIDLKEKEIPELRNKLQKVN--RDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELK 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1344 TMNVVME-------------TNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKR 1410
Cdd:TIGR00606 803 DVERKIAqqaaklqgsdldrTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQR 882
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1411 WKARNQHLVSQQKD----------------PDTEEYRKLLSEKE--VHTKRIQQ--LTEEIGRLKAEIARSNASLTNNQN 1470
Cdd:TIGR00606 883 RQQFEEQLVELSTEvqslireikdakeqdsPLETFLEKDQQEKEelISSKETSNkkAQDKVNDIKEKVKNIHGYMKDIEN 962
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1471 LIQSLKED---------------LNKVRTEKETIQKDLDAKIIDI-----QEKVKTITQVKKIGRRYKTQYEELKAQQDK 1530
Cdd:TIGR00606 963 KIQDGKDDylkqketelntvnaqLEECEKHQEKINEDMRLMRQDIdtqkiQERWLQDNLTLRKRENELKEVEEELKQHLK 1042
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1531 VMeTSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKetEARNLQEQTVQLQSELSRLRQDLQD 1610
Cdd:TIGR00606 1043 EM-GQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREP--QFRDAEEKYREMMIVMRTTELVNKD 1119
|
970
....*....|..
gi 966923050 1611 RTTQEEQLRQQI 1622
Cdd:TIGR00606 1120 LDIYYKTLDQAI 1131
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
141-575 |
3.05e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 52.98 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 141 QERLVNETRECQSLRLELEKLSNQLKALTEKNKELEIAQD---RNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYS 217
Cdd:PRK01156 151 RKKILDEILEINSLERNYDKLKDVIDMLRAEISNIDYLEEklkSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNA 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 218 TEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKgNEILE 297
Cdd:PRK01156 231 MDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYK-NDIEN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 298 LKCNLENKKEEVSRLEEQMNGLktsnEHLQKHVEDLLTKLKEAKE--QQASMEEKFHNELNAHIklsNLYKSAADDSEAK 375
Cdd:PRK01156 310 KKQILSNIDAEINKYHAIIKKL----SVLQKDYNDYIKKKSRYDDlnNQILELEGYEMDYNSYL---KSIESLKKKIEEY 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 376 SNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKemleKIGKLEKELENVNDLLSATKRKGAILSEEELAAMS 455
Cdd:PRK01156 383 SKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS----KVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVC 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 456 PTAAAVAKIvkpgmklTELYNAYVETQDQLLLEKLENKRINKYLDE-IVKEVEAKAPILKRQREEYERAQKAVASLSVKL 534
Cdd:PRK01156 459 GTTLGEEKS-------NHIINHYNEKKSRLEEKIREIEIEVKDIDEkIVDLKKRKEYLESEEINKSINEYNKIESARADL 531
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 966923050 535 EQAMKEIQRLQEDTDKANkqssvlERDNQRMEIQIKDLSQQ 575
Cdd:PRK01156 532 EDIKIKINELKDKHDKYE------EIKNRYKSLKLEDLDSK 566
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
484-941 |
3.12e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 3.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 484 QLLLEKLENK---------RINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQ 554
Cdd:COG4717 45 AMLLERLEKEadelfkpqgRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 555 SSVLERDNQRMEI--QIKDLSQQIRVLLMELEEargnhvirdeevssadissssevISQHLVSYRNIEELQQQNQRLLVA 632
Cdd:COG4717 125 LQLLPLYQELEALeaELAELPERLEELEERLEE-----------------------LRELEEELEELEAELAELQEELEE 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 633 LRELGETREREEQETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQ----------RDMYRILLSQTTGVAI 702
Cdd:COG4717 182 LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEleaaaleerlKEARLLLLIAAALLAL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 703 PLHASSLDDISLASTPKR------PSTSQTVSTPAPVPVIESTEAIEAKAALKQL-QEIFENYKKEKAENEKIQNEQLEK 775
Cdd:COG4717 262 LGLGGSLLSLILTIAGVLflvlglLALLFLLLAREKASLGKEAEELQALPALEELeEEELEELLAALGLPPDLSPEELLE 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 776 LQEQVTDLRSQNTKIST------QLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEK 849
Cdd:COG4717 342 LLDRIEELQELLREAEEleeelqLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEEL 421
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 850 LAVAEvrAENLKKEKEMLKLSEVRLSQQRESLLAEqrgqnllltnLQTIQGILERSETETkqrlssQIEKLEHEISHLKK 929
Cdd:COG4717 422 LEALD--EEELEEELEELEEELEELEEELEELREE----------LAELEAELEQLEEDG------ELAELLQELEELKA 483
|
490
....*....|..
gi 966923050 930 KLGNEVEQRHTL 941
Cdd:COG4717 484 ELRELAEEWAAL 495
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1060-1521 |
3.40e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 3.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1060 EEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDdKRRAIESMEQQLSELKKTLSSVQNEVQEAlqrastalsneqQ 1139
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEE-KEEEYAELQEELEELEEELEELEAELEEL------------R 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1140 ARRDCQEQAKIAVEAQNKY---ERELMLHAADVEALQAA----KEQVSKMASVRQHLEETTQKAESQLLECKASWEERER 1212
Cdd:COG4717 116 EELEKLEKLLQLLPLYQELealEAELAELPERLEELEERleelRELEEELEELEAELAELQEELEELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1213 MLKDEVSKCVCRCEDLEKQNKLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEV 1292
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTI 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1293 AQVESLRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAK 1372
Cdd:COG4717 276 AGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLRE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1373 VRKL--ELDILPLQEANAELSEKSGM--------LQAEKKLLEEDVKRWKARNQHLvsQQKDPDTEEYRKLLSEKEVHtK 1442
Cdd:COG4717 356 AEELeeELQLEELEQEIAALLAEAGVedeeelraALEQAEEYQELKEELEELEEQL--EELLGELEELLEALDEEELE-E 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1443 RIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKED--LNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQ 1520
Cdd:COG4717 433 ELEELEEELEELEEELEELREELAELEAELEQLEEDgeLAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
.
gi 966923050 1521 Y 1521
Cdd:COG4717 513 R 513
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
820-1139 |
3.76e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.61 E-value: 3.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 820 ERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKE------KEMLKLSEVRLSQQRESLLAEQ-------- 885
Cdd:PRK11281 66 EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDndeetrETLSTLSLRQLESRLAQTLDQLqnaqndla 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 886 --------------RGQNLLLTNLQTIQGI---LERSETETKQRLSSQIEKLEHEISHLKKKLGNeveQRHTLTRNLDVQ 948
Cdd:PRK11281 146 eynsqlvslqtqpeRAQAALYANSQRLQQIrnlLKGGKVGGKALRPSQRVLLQAEQALLNAQNDL---QRKSLEGNTQLQ 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 949 LLDTKrQLDtETNLHLNtkelfkNAQKEIATLKQHLSNMEVQLASQSSQRTGKGQPSNKEDVDDLVSQ------------ 1016
Cdd:PRK11281 223 DLLQK-QRD-YLTARIQ------RLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQeleinlqlsqrl 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1017 LRQTEE---------QVNDLKERLKTSTSNV-EQYRAMVTSLEES--LNKEKQ------VTEEVRKNI-EVRLK--ESAE 1075
Cdd:PRK11281 295 LKATEKlntltqqnlRVKNWLDRLTQSERNIkEQISVLKGSLLLSriLYQQQQalpsadLIEGLADRIaDLRLEqfEINQ 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1076 FQTQLE------KKLMevEKEKQELQDDKRRAIESM----EQQLSELKKTLSSVQNEV------QEALQRASTALSN--E 1137
Cdd:PRK11281 375 QRDALFqpdayiDKLE--AGHKSEVTDEVRDALLQLlderRELLDQLNKQLNNQLNLAinlqlnQQQLLSVSDSLQStlT 452
|
..
gi 966923050 1138 QQ 1139
Cdd:PRK11281 453 QQ 454
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1441-1706 |
3.77e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 3.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1441 TKRIQQLTEEIGRLKAEIARSNASltnnqnlIQSLKEDLNKVRTEKETIQK--DLDAKIIDIQEKVKTITQVKKigrryk 1518
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEER-------LEALEAELDALQERREALQRlaEYSWDEIDVASAEREIAELEA------ 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1519 tQYEELKAQQDKVMETSAQSSGdhqeqhvLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQ 1598
Cdd:COG4913 676 -ELERLDASSDDLAALEEQLEE-------LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1599 SEL--SRLRQDLQDRttQEEQLRQQITEKEEKTRKAIVAAKSKIAhlagvkDQLTKENEELKQRNGALDQQKDELDvrit 1676
Cdd:COG4913 748 RALleERFAAALGDA--VERELRENLEERIDALRARLNRAEEELE------RAMRAFNREWPAETADLDADLESLP---- 815
|
250 260 270
....*....|....*....|....*....|.
gi 966923050 1677 alksQYEGRISRLERE-LREHQERHLEQRDE 1706
Cdd:COG4913 816 ----EYLALLDRLEEDgLPEYEERFKELLNE 842
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
219-672 |
3.96e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 3.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 219 EDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREK------G 292
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVkeleelK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 293 NEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEE-----KFHNELNAhiKLSNLYKS 367
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiklsEFYEEYLD--ELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 368 AADDSEaKSNELTRAVDELHKLLKEAGEANKAIQ-----------DHLL--EVEQSKDQME----KEMLEKIGKLEKELE 430
Cdd:PRK03918 316 LSRLEE-EINGIEERIKELEEKEERLEELKKKLKelekrleeleeRHELyeEAKAKKEELErlkkRLTGLTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 431 NVN--------DLLSATKRKGAILSEEE--LAAMSPTAAAVAKIVKPGMKLTE-----LYNAYVETQDQLLLEKLENKRI 495
Cdd:PRK03918 395 ELEkakeeieeEISKITARIGELKKEIKelKKAIEELKKAKGKCPVCGRELTEehrkeLLEEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 496 NKYLDEIVKEVE---AKAPILKRQREEYERAQKAVASLSV----KLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQ 568
Cdd:PRK03918 475 ERKLRKELRELEkvlKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 569 IKDLsQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELgeTREREEQETT 648
Cdd:PRK03918 555 KKKL-AELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKEL--KKLEEELDKA 631
|
490 500
....*....|....*....|....
gi 966923050 649 SSKITELQLKLESALTELEQLRKS 672
Cdd:PRK03918 632 FEELAETEKRLEELRKELEELEKK 655
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
186-587 |
4.68e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 52.35 E-value: 4.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 186 QSQFTRTKEELEA-EKRDLIRTNERLSQELEYSTEDVKRLNEKLKESNTTKGELQL----------KLDELQA------S 248
Cdd:PRK02224 186 RGSLDQLKAQIEEkEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEvleeheerreELETLEAeiedlrE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 249 DVSVKYREKrlEQEKELLHSQNTWLNtELKTKTDELLA---LGREKGNEILELKCNLENKKEEV-SRLEEQMNGLKTSN- 323
Cdd:PRK02224 266 TIAETERER--EELAEEVRDLRERLE-ELEEERDDLLAeagLDDADAEAVEARREELEDRDEELrDRLEECRVAAQAHNe 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 324 --EHLQKHVEDLLTKLKEAKEQQASMEEKFHNElnahiklsnlyKSAADDSEAKSNELTRAVDELHKLLKEAGEANKAIQ 401
Cdd:PRK02224 343 eaESLREDADDLEERAEELREEAAELESELEEA-----------REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAE 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 402 DHLLEVEQSKDqmekEMLEKIGKLEKELENVND-------LLSATK--------------------RKGAILSEEELAAM 454
Cdd:PRK02224 412 DFLEELREERD----ELREREAELEATLRTARErveeaeaLLEAGKcpecgqpvegsphvetieedRERVEELEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 455 SPTAAAVAKIVKPGMKLtelynayVETQDQllLEKLENKRinkylDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKL 534
Cdd:PRK02224 488 EEEVEEVEERLERAEDL-------VEAEDR--IERLEERR-----EDLEELIAERRETIEEKRERAEELRERAAELEAEA 553
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 966923050 535 EQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLsQQIRVLLMELEEAR 587
Cdd:PRK02224 554 EEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAE 605
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
146-446 |
4.99e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 4.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 146 NETRECQSLRLELEKLsnqlkALTEKNKELEIAQDRNIAIQSQFtrtkEELEAEKRDLIRTNERLSQELEYSTEDVKRLN 225
Cdd:TIGR02169 208 EKAERYQALLKEKREY-----EGYELLKEKEALERQKEAIERQL----ASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 226 EKLKE-SNTTKGELQLKLDELQASDVSVKYREKRLEQEKEllhsqntwlntELKTKTDELLALGREKGNEILELKCNLEN 304
Cdd:TIGR02169 279 KKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELE-----------DAEERLAKLEAEIDKLLAEIEELEREIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 305 KKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKF------HNELNAHI-KLSNLYKSAADDSEAKSN 377
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLeklkreINELKRELdRLQEELQRLSEELADLNA 427
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966923050 378 ELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMlEKIGKLEKELENVNDLLSATKRKGAIL 446
Cdd:TIGR02169 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE-QELYDLKEEYDRVEKELSKLQRELAEA 495
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
160-449 |
5.94e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 51.43 E-value: 5.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 160 KLSNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYSTEDVKRLNEKLKESNTTKGELQ 239
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 240 LKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILE---LKCNLENKKEEVSRLEEQM 316
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAErkqLQAKLQQTEEELRSLSKEF 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 317 NGLK-------TSNEHLQKHVEDLLTKLKEAKEQQASMEEkFHNELNAHIKLSNLYKSAAD----DSEAKSNELTRAVDE 385
Cdd:pfam07888 195 QELRnslaqrdTQVLQLQDTITTLTQKLTTAHRKEAENEA-LLEELRSLQERLNASERKVEglgeELSSMAAQRDRTQAE 273
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966923050 386 LHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGKLEKELENVNDLLSATKRKGAILSEE 449
Cdd:pfam07888 274 LHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEE 337
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
221-671 |
7.68e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 7.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 221 VKRLNEKLKESNTTKGEL-QLKLDELQASDVSVKYREKRLEQEKELLHSQNTwLNTELKTKTDELLALGREKGNeiLELK 299
Cdd:COG4717 48 LERLEKEADELFKPQGRKpELNLKELKELEEELKEAEEKEEEYAELQEELEE-LEEELEELEAELEELREELEK--LEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 300 CNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKfHNELNAHIKLSNLYKsaaddsEAKSNEL 379
Cdd:COG4717 125 LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAEL-QEELEELLEQLSLAT------EEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 380 TRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMlEKIGKLEKELENVNDLLSATKRKGAILSEEELAAMSPTAA 459
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL-EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 460 AVAKIV---------KPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL 530
Cdd:COG4717 277 GVLFLVlgllallflLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 531 S-----VKLEQAMKEIQRLQEDTDKANKQS--SVLERDNQRMEIQikdlsQQIRVLLMELEEARGnhvirdeEVSSADIS 603
Cdd:COG4717 357 EeleeeLQLEELEQEIAALLAEAGVEDEEElrAALEQAEEYQELK-----EELEELEEQLEELLG-------ELEELLEA 424
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966923050 604 SSSEVISQHLVSYRniEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESALTELEQLRK 671
Cdd:COG4717 425 LDEEELEEELEELE--EELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAE 490
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1352-1716 |
8.83e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 8.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1352 NKMLREEKERLEQDLQQMQAKVRK--------LELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHL--VSQ 1421
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEEKdlherlngLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELetLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1422 QKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQ 1501
Cdd:PRK02224 259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQ 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1502 EKVKTITQVKKIGRRYKTQYEELkaqqdkvmetsaqssgdHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLS 1581
Cdd:PRK02224 339 AHNEEAESLREDADDLEERAEEL-----------------REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1582 EKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEE-------KTRKAIVAAKSKIAHLAGVKDQLTKEN 1654
Cdd:PRK02224 402 DAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcPECGQPVEGSPHVETIEEDRERVEELE 481
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966923050 1655 EELKQrngaLDQQKDELDVRITALKS--QYEGRISRLERELREHQERHLEQRDEPQEPSNKVPE 1716
Cdd:PRK02224 482 AELED----LEEEVEEVEERLERAEDlvEAEDRIERLEERREDLEELIAERRETIEEKRERAEE 541
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1081-1706 |
9.01e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.51 E-value: 9.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1081 EKKLMEVEKEKQELQDDKRRAIES----MEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQN 1156
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQelklKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1157 KYERELMLHA---ADVEALQAAKEQVSKMASVR-----------------------------QHLEETTQKAESQLLECK 1204
Cdd:pfam02463 255 SSKQEIEKEEeklAQVLKENKEEEKEKKLQEEElkllakeeeelksellklerrkvddeeklKESEKEKKKAEKELKKEK 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1205 ASWEERERMLKdEVSKCVCRCEDLEKQNKLLHDQIEKLSDKVVASVKEGVQGPLNvSLSEEGKSQEQILEILRFIRREKE 1284
Cdd:pfam02463 335 EEIEELEKELK-ELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSS-AAKLKEEELELKSEEEKEAQLLLE 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1285 IAETRFEVAQVESLRYRQRVELLEREL--QELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNKM-LREEKER 1361
Cdd:pfam02463 413 LARQLEDLLKEEKKEELEILEEEEESIelKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEqLELLLSR 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1362 LEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQ-QKDPDTEEYRKLLSEKEVH 1440
Cdd:pfam02463 493 QKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEvSATADEVEERQKLVRALTE 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1441 TKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKdLDAKIIDIQEKVKTITQVKKIGRRYKTQ 1520
Cdd:pfam02463 573 LPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAK-VVEGILKDTELTKLKESAKAKESGLRKG 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1521 YEELKAQQDKVmETSAQSSGDHQEQHvlvqEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSE 1600
Cdd:pfam02463 652 VSLEEGLAEKS-EVKASLSELTKELL----EIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1601 LSRL-------RQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDV 1673
Cdd:pfam02463 727 VQEAqdkineeLKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRAL 806
|
650 660 670
....*....|....*....|....*....|...
gi 966923050 1674 RITALKSQYEGRISRLERELREHQERHLEQRDE 1706
Cdd:pfam02463 807 EEELKEEAELLEEEQLLIEQEEKIKEEELEELA 839
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
738-930 |
9.67e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 9.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 738 STEAIEAKAALKQLQEIFENYKKEKAENEKIQNE---QLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRRE 814
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKAllkQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 815 ITSLHERNQKLTATTQKQEQIINTM----TQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNL 890
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 966923050 891 LLTNLQTIQGILERSETETKQ---RLSSQIEKLEHEISHLKKK 930
Cdd:COG4942 179 LLAELEEERAALEALKAERQKllaRLEKELAELAAELAELQQE 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1543-1721 |
1.02e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1543 QEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQdrtTQEEQLRQQI 1622
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA---ELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1623 TEKEEKTR------------------------------KAIVAA-KSKIAHLAGVKDQLTKENEELKQRNGALDQQKDEL 1671
Cdd:COG4942 104 EELAELLRalyrlgrqpplalllspedfldavrrlqylKYLAPArREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 966923050 1672 DVRITALKSQYEGR---ISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQI 1721
Cdd:COG4942 184 EEERAALEALKAERqklLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
105-448 |
1.14e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 105 LADQQSEIDGLKGRHEKF------KVESEQQYFEIEKRLSHSQERL---------VNETRECQSLRLELEKLSNQLKALT 169
Cdd:COG4717 73 LKELEEELKEAEEKEEEYaelqeeLEELEEELEELEAELEELREELeklekllqlLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 170 EKNKELEIAQDRNIAIQSQFTRTKEELEAEKRdliRTNERLSQELEYSTEDVKRLNEKLKESNTTKGELQLKLDELQA-- 247
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLE---QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEel 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 248 ----SDVSVKYREKRLEQEKELL--------HSQNTWLNTELKTKTDELLALG---------------REKGNEILELKC 300
Cdd:COG4717 230 eqleNELEAAALEERLKEARLLLliaaallaLLGLGGSLLSLILTIAGVLFLVlgllallflllarekASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 301 NLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH--NELNAHIKLSNLYKSAADDSEAKSNE 378
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEelQLEELEQEIAALLAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923050 379 LTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEML-EKIGKLEKELENV-NDLLSATKRKGAILSE 448
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELeEELEELEEELEELeEELEELREELAELEAE 461
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1356-1603 |
1.20e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 51.07 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1356 REEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKS----GMLQAEKKLLE--EDVKRWKAR----NQHLVSQQKDP 1425
Cdd:PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETlstlSLRQLESRLAQtlDQLQNAQNDlaeyNSQLVSLQTQP 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1426 dtEEYRKLLSEkevHTKRIQQLT---------------EEIGRLKAEIARSNASLTNNQNLIQSlkedlNKVRTEKETIQ 1490
Cdd:PRK11281 159 --ERAQAALYA---NSQRLQQIRnllkggkvggkalrpSQRVLLQAEQALLNAQNDLQRKSLEG-----NTQLQDLLQKQ 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1491 KDL-DAKIIDIQEKVKTITQVkkIGRRYKTQYEELKAQQDkvmetSAQSSGDHQEQHVLVQEMQ---ELKETLNQAETKS 1566
Cdd:PRK11281 229 RDYlTARIQRLEHQLQLLQEA--INSKRLTLSEKTVQEAQ-----SQDEAARIQANPLVAQELEinlQLSQRLLKATEKL 301
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 966923050 1567 KSL-------ESQVENLQKTlseketeARNLQEQTVQLQSE--LSR 1603
Cdd:PRK11281 302 NTLtqqnlrvKNWLDRLTQS-------ERNIKEQISVLKGSllLSR 340
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1422-1638 |
1.30e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.21 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1422 QKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQ 1501
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1502 EK-------------------VKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQssgdhqeqhvLVQEMQELKETLNQA 1562
Cdd:COG3883 97 RSggsvsyldvllgsesfsdfLDRLSALSKIADADADLLEELKADKAELEAKKAE----------LEAKLAELEALKAEL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923050 1563 ETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKS 1638
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
82-587 |
1.30e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 82 QQVLERTELNKLP-KSVQNKLEKFLADQQSEIDGLKGR-------HEKFKVESE--------QQYFEIEKRLSHSQERLV 145
Cdd:pfam15921 202 KKIYEHDSMSTMHfRSLGSAISKILRELDTEISYLKGRifpvedqLEALKSESQnkielllqQHQDRIEQLISEHEVEIT 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 146 NETRECQSLRLELEKLSNQLKALTEKNKELEIAQDRNIaiqSQFTRTKEELEAEKRDLIRTNERLSQELEystEDVKRLN 225
Cdd:pfam15921 282 GLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQL---SDLESTVSQLRSELREAKRMYEDKIEELE---KQLVLAN 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 226 EKLKESNTTKGELQLKL----DELQASDVSVKYREKRLEQEKEllHSQNTW------------LNTELKTKTDELLAL-- 287
Cdd:pfam15921 356 SELTEARTERDQFSQESgnldDQLQKLLADLHKREKELSLEKE--QNKRLWdrdtgnsitidhLRRELDDRNMEVQRLea 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 288 ------------------GREKGNEILE----LKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEaKEQQA 345
Cdd:pfam15921 434 llkamksecqgqmerqmaAIQGKNESLEkvssLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQE-KERAI 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 346 smeekfhnelnahiklsnlyksaaddsEAKSNELTRAVDELHKLLKEAgEANKAIQDHLLEVEQSKDQMEKEMLEK---I 422
Cdd:pfam15921 513 ---------------------------EATNAEITKLRSRVDLKLQEL-QHLKNEGDHLRNVQTECEALKLQMAEKdkvI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 423 GKLEKELENVNDLLSATKRK-GAILSEEelaamsptaaavAKIVKpgmkltELYNAYVETQDqllLEKLENKRinkylDE 501
Cdd:pfam15921 565 EILRQQIENMTQLVGQHGRTaGAMQVEK------------AQLEK------EINDRRLELQE---FKILKDKK-----DA 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 502 IVKEVEAKAPILKRQREEYERAQ----KAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERD----NQRMEIQIKDLS 573
Cdd:pfam15921 619 KIRELEARVSDLELEKVKLVNAGserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNfrnkSEEMETTTNKLK 698
|
570
....*....|....
gi 966923050 574 QQIRVLLMELEEAR 587
Cdd:pfam15921 699 MQLKSAQSELEQTR 712
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
694-1502 |
1.46e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 694 LSQTTGVAIPLHASSLDDISLASTPKRPSTSQTVSTPAPVPVIESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQL 773
Cdd:pfam15921 19 ITSNRGSSSPFFVSSIRGTIIENTSSTGTFTQIPIFPKYEVELDSPRKIIAYPGKEHIERVLEEYSHQVKDLQRRLNESN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 774 EKLQEQVTDLRSQNTKISTQLdfasKRYEMLQDNVEGYRREitslhernqkltaTTQKQEQIINTMTQdlrganeklAVA 853
Cdd:pfam15921 99 ELHEKQKFYLRQSVIDLQTKL----QEMQMERDAMADIRRR-------------ESQSQEDLRNQLQN---------TVH 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 854 EVRAENLKKEkEMLKLSEVRLSQQRESLLAEQrgqnlllTNLQTIQGILERSETETKQRLSSQ-------IEKLEHEISH 926
Cdd:pfam15921 153 ELEAAKCLKE-DMLEDSNTQIEQLRKMMLSHE-------GVLQEIRSILVDFEEASGKKIYEHdsmstmhFRSLGSAISK 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 927 LKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNT-----KELFKNAQKEIATLKQHLSNMEVQLAS-QSSQRTG 1000
Cdd:pfam15921 225 ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQhqdriEQLISEHEVEITGLTEKASSARSQANSiQSQLEII 304
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1001 KGQPSNKEDVddLVSQLRQTEEQVNDLKERLKTSTsnvEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQL 1080
Cdd:pfam15921 305 QEQARNQNSM--YMRQLSDLESTVSQLRSELREAK---RMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1081 EKKLMEVEKEKQELQDDKRRAIESMEQQ------LSELKKTLSSVQNEVQ--EALQRAstalsneqqARRDCQEQAKIAV 1152
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRDtgnsitIDHLRRELDDRNMEVQrlEALLKA---------MKSECQGQMERQM 450
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1153 EAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLK---DEVSKCVCRCeDLE 1229
Cdd:pfam15921 451 AAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEatnAEITKLRSRV-DLK 529
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1230 KQ---------NKLLHDQIE----KLS----DKVVASVKEGVQGPLNVsLSEEGKSQEQILeiLRFIRREKEIAETRFEV 1292
Cdd:pfam15921 530 LQelqhlknegDHLRNVQTEcealKLQmaekDKVIEILRQQIENMTQL-VGQHGRTAGAMQ--VEKAQLEKEINDRRLEL 606
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1293 AQVESLR------YRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTET----MNVVMETNKMLR------ 1356
Cdd:pfam15921 607 QEFKILKdkkdakIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTsrneLNSLSEDYEVLKrnfrnk 686
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1357 -EEKE----RLEQDLQQMQAKVRKLELDILPLQEANA-----------ELSEKSGM---LQAEKKLLEEDV------KRW 1411
Cdd:pfam15921 687 sEEMEtttnKLKMQLKSAQSELEQTRNTLKSMEGSDGhamkvamgmqkQITAKRGQidaLQSKIQFLEEAMtnankeKHF 766
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1412 KARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQslkedlnkvRTEKETIQK 1491
Cdd:pfam15921 767 LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQ---------RQEQESVRL 837
|
890
....*....|.
gi 966923050 1492 DLDaKIIDIQE 1502
Cdd:pfam15921 838 KLQ-HTLDVKE 847
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1005-1200 |
2.04e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1005 SNKEDVDDLVSQLRQTEEQVNDLKERLKTstsnVEQYRAMVTSLEESLNKEKQVTEEVrknIEVRlkesaefqtQLEKKL 1084
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEA----LEAELDALQERREALQRLAEYSWDE---IDVA---------SAEREI 670
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1085 MEVEKEKQELQDDKRrAIESMEQQLSELKKTLSSVQNEVqEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELML 1164
Cdd:COG4913 671 AELEAELERLDASSD-DLAALEEQLEELEAELEELEEEL-DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELR 748
|
170 180 190
....*....|....*....|....*....|....*.
gi 966923050 1165 HAADVEALQAAKEQVSKmaSVRQHLEETTQKAESQL 1200
Cdd:COG4913 749 ALLEERFAAALGDAVER--ELRENLEERIDALRARL 782
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
79-672 |
2.30e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.97 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 79 AVLQQVLERTELNKLPKSVQnKLEKFLADQQSEIDGLKGRHEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLEL 158
Cdd:pfam02463 305 LERRKVDDEEKLKESEKEKK-KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLES 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 159 EKLSNQLK----ALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYSTEDVKRLNEKLKESNTT 234
Cdd:pfam02463 384 ERLSSAAKlkeeELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKD 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 235 KGELQLKLDELQaSDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEE 314
Cdd:pfam02463 464 ELELKKSEDLLK-ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 315 QMNGLKTSNEHLQKHVE-DLLTKLKEAKEQQASMEEKF---------------HNELNAHIKLSNLYKSAADDSEAKSNE 378
Cdd:pfam02463 543 VAISTAVIVEVSATADEvEERQKLVRALTELPLGARKLrllipklklplksiaVLEIDPILNLAQLDKATLEADEDDKRA 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 379 LTRAVDELHKLLKEAGEANKAIQDHLLE-VEQSKDQMEKEMLEKIGKLEKELENVNDLLSATKRKGAILSEEELAAMSPT 457
Cdd:pfam02463 623 KVVEGILKDTELTKLKESAKAKESGLRKgVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIK 702
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 458 AAAVAKIVKPGMKLTELYNayVETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQA 537
Cdd:pfam02463 703 KKEQREKEELKKLKLEAEE--LLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEER 780
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 538 MKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYR 617
Cdd:pfam02463 781 EKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE 860
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 618 NIEELQQQNQRLLVALRELGETREREEQETTSSKITELQLKLESALTELEQLRKS 672
Cdd:pfam02463 861 EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEK 915
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
895-1375 |
2.42e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 895 LQTIQGILERSEtETKQRlssqIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLlDTKRQLDTETNLHLNTKELFKNAQ 974
Cdd:PRK02224 236 RDEADEVLEEHE-ERREE----LETLEAEIEDLRETIAETEREREELAEEVRDLR-ERLEELEEERDDLLAEAGLDDADA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 975 KEIATLKQHLSNMEVQL------ASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSL 1048
Cdd:PRK02224 310 EAVEARREELEDRDEELrdrleeCRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEEL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1049 E---ESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRA------------------------ 1101
Cdd:PRK02224 390 EeeiEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAealleagkcpecgqpvegsphvet 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1102 IESMEQQLSELKKTLSSV---QNEVQEALQRASTALSNEQQARRdCQEQAKIAVEAQNKYERELmlhAADVEALQAAKEQ 1178
Cdd:PRK02224 470 IEEDRERVEELEAELEDLeeeVEEVEERLERAEDLVEAEDRIER-LEERREDLEELIAERRETI---EEKRERAEELRER 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1179 VSKMASVRQHLEETTQKAESQLLECKasweERERMLKDEVSKCVCRCEDLEKQNKLLhDQIEKLSDKVvasvkegvqGPL 1258
Cdd:PRK02224 546 AAELEAEAEEKREAAAEAEEEAEEAR----EEVAELNSKLAELKERIESLERIRTLL-AAIADAEDEI---------ERL 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1259 NVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRY-RQRVELLERELQELQDSLNAEREKVQVTA----KTMA 1333
Cdd:PRK02224 612 REKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREdKERAEEYLEQVEEKLDELREERDDLQAEIgaveNELE 691
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 966923050 1334 QHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRK 1375
Cdd:PRK02224 692 ELEELRERREALENRVEALEALYDEAEELESMYGDLRAELRQ 733
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
999-1201 |
3.26e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 3.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 999 TGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTstsnVEQYRAMVTSLEESLNKEKQVTEEVRKniEVRLKESAEFQT 1078
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELEKLEK--LLQLLPLYQELE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1079 QLEKKLMEVEKEKQELQdDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTAlsnEQQARRDCQEQAKIAVEAQNKY 1158
Cdd:COG4717 136 ALEAELAELPERLEELE-ERLEELRELEEELEELEAELAELQEELEELLEQLSLA---TEEELQDLAEELEELQQRLAEL 211
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 966923050 1159 ERELMLHAADVEALQAAKEQVSKMAsVRQHLEETTQKAESQLL 1201
Cdd:COG4717 212 EEELEEAQEELEELEEELEQLENEL-EAAALEERLKEARLLLL 253
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1007-1627 |
3.28e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 3.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1007 KEDVDDLVSQLRQTEEQvnDLKERLKTstsnVEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEkklmE 1086
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEK--DLHERLNG----LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE----T 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1087 VEKEKQELQDDKRRAiESMEQQLSElkktlssvqnEVQEALQRASTALSNEQQARRDCQeqakiaveaqnkyerelmLHA 1166
Cdd:PRK02224 256 LEAEIEDLRETIAET-EREREELAE----------EVRDLRERLEELEEERDDLLAEAG------------------LDD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1167 ADVEALQAAKEQVSKmasvrqHLEETTQKAESQLLECKASWEERERMLKDevskcvcrCEDLEKQNKLLHDQIEKLsDKV 1246
Cdd:PRK02224 307 ADAEAVEARREELED------RDEELRDRLEECRVAAQAHNEEAESLRED--------ADDLEERAEELREEAAEL-ESE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1247 VASVKEGVqgplnvslseeGKSQEQILEIlrfiRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQ 1326
Cdd:PRK02224 372 LEEAREAV-----------EDRREEIEEL----EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1327 VTAKTMAQHEELM---KKTETMNVV-----METNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEAnAELSEKSGMLQ 1398
Cdd:PRK02224 437 TARERVEEAEALLeagKCPECGQPVegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL-VEAEDRIERLE 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1399 AEKKLLEE--DVKRWKARNQHLVSQQKDPDTEEYRkllSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLk 1476
Cdd:PRK02224 516 ERREDLEEliAERRETIEEKRERAEELRERAAELE---AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL- 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1477 edlNKVRTEKETIQkDLDAKIIDIQEKVKTITQVKKIGRryktqyEELKAQQDKVMETSAQSSGDHqeqhvlVQEMQELK 1556
Cdd:PRK02224 592 ---ERIRTLLAAIA-DAEDEIERLREKREALAELNDERR------ERLAEKRERKRELEAEFDEAR------IEEAREDK 655
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 1557 ETLnqaetkskslESQVENLQKTLSEKETEARNLQEQTVQLQSELSRL------RQDLQDRTTQEEQLRQQITEKEE 1627
Cdd:PRK02224 656 ERA----------EEYLEQVEEKLDELREERDDLQAEIGAVENELEELeelrerREALENRVEALEALYDEAEELES 722
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
863-1122 |
3.30e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 3.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 863 EKEMLKLSEVRLS--QQRESLLAE----QRGQNLLLTNLqtiqgilerSETETKQRLSSQ-----------IEKLEHEIS 925
Cdd:PLN02939 141 EKNILLLNQARLQalEDLEKILTEkealQGKINILEMRL---------SETDARIKLAAQekihveileeqLEKLRNELL 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 926 HLKKKLGNEVeqrHTLTRNLD------VQLLDTKRQLDTETNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASqssqrt 999
Cdd:PLN02939 212 IRGATEGLCV---HSLSKELDvlkeenMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIV------ 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1000 gkgqpsNKEDVDDLVS-QLRQTEEQVNDLKERLKTSTSNVEQYrAMVTSLEESLNKEKQVTEEVRKNIEVRlKESAEFQT 1078
Cdd:PLN02939 283 ------AQEDVSKLSPlQYDCWWEKVENLQDLLDRATNQVEKA-ALVLDQNQDLRDKVDKLEASLKEANVS-KFSSYKVE 354
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 966923050 1079 QLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNE 1122
Cdd:PLN02939 355 LLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
489-1145 |
3.50e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 49.31 E-value: 3.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 489 KLENKRINKYLDEivKEVEAKAPILKRQREEYERAQKAVASL---------SVKLEQAMKEIQRLQEDTDKANKQSSVLE 559
Cdd:COG5022 825 TIKREKKLRETEE--VEFSLKAEVLIQKFGRSLKAKKRFSLLkketiylqsAQRVELAERQLQELKIDVKSISSLKLVNL 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 560 RDNQrmeiQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHlvSYRNIEELQQQNqrllvalrelget 639
Cdd:COG5022 903 ELES----EIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYV--KLPELNKLHEVE------------- 963
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 640 rereeqettsSKITELQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSqttgvAIPLHASSLDDISLASTPK 719
Cdd:COG5022 964 ----------SKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYG-----ALQESTKQLKELPVEVAEL 1028
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 720 RPSTSQTVSTPApvpviesTEAIEAKAA-LKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTqldFAS 798
Cdd:COG5022 1029 QSASKIISSEST-------ELSILKPLQkLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKT---INV 1098
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 799 KRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEqIINTMTQDLRGANEKLAVAEVRAENLKKEKEMlklsEVRLSQQR 878
Cdd:COG5022 1099 KDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISK-FLSQLVNTLEPVFQKLSVLQLELDGLFWEANL----EALPSPPP 1173
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 879 ESLLAEQRgqnLLLTNLQTIQGILERSETETKQRLSSQIEKLEHEISHLKKKL---------GNEVEQRHTLTRNLDVQL 949
Cdd:COG5022 1174 FAALSEKR---LYQSALYDEKSKLSSSEVNDLKNELIALFSKIFSGWPRGDKLkklisegwvPTEYSTSLKGFNNLNKKF 1250
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 950 LD----TKRQLDTETNLHLNTKELFK-NAQKEIATLKQHLSNMEVQLASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQ- 1023
Cdd:COG5022 1251 DTpasmSNEKLLSLLNSIDNLLSSYKlEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREf 1330
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1024 -VNDLKERLKtstsNVEQYRAMVTSLEESLNKEKQVTEEVR--KNIEVR-LKES---AEFQTQLEKKLME-----VEKEK 1091
Cdd:COG5022 1331 eISDVDEELE----ELIQAVKVLQLLKDDLNKLDELLDACYslNPAEIQnLKSRydpADKENNLPKEILKkiealLIKQE 1406
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 1092 QELQDDKRRAIESMEQQLSELKKTLSSVQNEV---QEALQRASTALSNEQQARRDCQ 1145
Cdd:COG5022 1407 LQLSLEGKDETEVHLSEIFSEEKSLISLDRNSiykEEVLSSLSALLTKEKIALLDRK 1463
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1356-1495 |
3.68e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 49.09 E-value: 3.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1356 REEKERLEQDLQQMQAKVRKLEldilplqeanaelsEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLS 1435
Cdd:COG2433 398 EREKEHEERELTEEEEEIRRLE--------------EQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRK 463
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1436 EKEvhtkrIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDA 1495
Cdd:COG2433 464 DRE-----ISRLDREIERLERELEEERERIEELKRKLERLKELWKLEHSGELVPVKVVEK 518
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
75-550 |
4.11e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 4.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 75 TDMAAVLQQVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFkvesEQQYFEIEKRLSHSQERLVNETRECQSL 154
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL----AEELLEALRAAAELAAQLEELEEAEEAL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 155 RLELEKLSNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYSTEDVKRLNEKLKESNTT 234
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 235 KGELQLKLDELQASDVSVKYREKRLEQEK--ELLHSQNTWLNTELKTKTDELLALGREKGNEILE--LKCNLENKKEEVS 310
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGlaGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvaAAAIEYLKAAKAG 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 311 RLE----EQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEK-FHNEL-----NAHIKLSNLYKSAADDSEAKsnELT 380
Cdd:COG1196 573 RATflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYvLGDTLlgrtlVAARLEAALRRAVTLAGRLR--EVT 650
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 381 RAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGKLEKELENVNDLLSATKRKGAILSEEELAAmspTAAA 460
Cdd:COG1196 651 LEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEE---EALE 727
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 461 VAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRInkylDEIVKEVEAkapiLKRQR-----------EEYERAQKAVAS 529
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDL----EELERELER----LEREIealgpvnllaiEEYEELEERYDF 799
|
490 500
....*....|....*....|....
gi 966923050 530 LSVK---LEQAMKEIQRLQEDTDK 550
Cdd:COG1196 800 LSEQredLEEARETLEEAIEEIDR 823
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1550-1724 |
4.78e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 4.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1550 QEMQELKETLNQAETKskslESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQ--DLQDRTTQEEQLRQQITEKEE 1627
Cdd:COG4717 71 KELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKLEKllQLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1628 KTRKAivaaKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDV----RITALKSQYE---GRISRLERELREHQERH 1700
Cdd:COG4717 147 RLEEL----EERLEELRELEEELEELEAELAELQEELEELLEQLSLateeELQDLAEELEelqQRLAELEEELEEAQEEL 222
|
170 180
....*....|....*....|....
gi 966923050 1701 LEQRDEPQEPSNKVPEQQRQITLK 1724
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLK 246
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1443-1628 |
4.81e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 4.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1443 RIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTItqvkkigrryktqyE 1522
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI--------------K 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1523 ELKAQQDKVMetsaqssgDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEarnLQEQTVQLQSELS 1602
Cdd:COG1579 77 KYEEQLGNVR--------NNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAE---LAELEAELEEKKA 145
|
170 180
....*....|....*....|....*.
gi 966923050 1603 RLRQDLQDRTTQEEQLRQQITEKEEK 1628
Cdd:COG1579 146 ELDEELAELEAELEELEAEREELAAK 171
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1511-1708 |
5.96e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 5.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1511 KKIGRRYKTQYEELKAQQDKVMETSAQssgdHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLqktlsEKETEARNL 1590
Cdd:COG4717 60 KPQGRKPELNLKELKELEEELKEAEEK----EEEYAELQEELEELEEELEELEAELEELREELEKL-----EKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1591 QEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDE 1670
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAE 210
|
170 180 190
....*....|....*....|....*....|....*...
gi 966923050 1671 LDVRITALKSqyegRISRLERELREHQERHLEQRDEPQ 1708
Cdd:COG4717 211 LEEELEEAQE----ELEELEEELEQLENELEAAALEER 244
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
76-350 |
5.97e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 5.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 76 DMAAVLQQVLERTELNKLPKSVQNKLEKFLAdQQSEIDGLKGRHEKFKveseqqyfEIEKRLS-HSQERLVNETRECQSL 154
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLK-KESELIKLKELAEQLK--------ELEEKLKkYNLEELEKKAEEYEKL 530
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 155 RLELEKLSNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYSTEDVKRLNEKLKESNTT 234
Cdd:PRK03918 531 KEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDA 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 235 KGELQLKLDELQASDVSVKYREKRLEQEKellhsqntwlnTELKTKTDELLALGREKGNEilelkcNLENKKEEVSRLEE 314
Cdd:PRK03918 611 EKELEREEKELKKLEEELDKAFEELAETE-----------KRLEELRKELEELEKKYSEE------EYEELREEYLELSR 673
|
250 260 270
....*....|....*....|....*....|....*.
gi 966923050 315 QMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEK 350
Cdd:PRK03918 674 ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1350-1572 |
6.01e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 6.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1350 ETNKMLREEKERLEQDLQQMQAKVR--KLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDT 1427
Cdd:COG3206 175 KALEFLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPD 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1428 EEYRKLLSEkevhtkRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEketIQKDLDAKIIDIQEKVKTI 1507
Cdd:COG3206 255 ALPELLQSP------VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ---LQQEAQRILASLEAELEAL 325
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 1508 tqvkkigrryKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQ 1572
Cdd:COG3206 326 ----------QAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
217-1506 |
6.02e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 6.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 217 STEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLN----TELKTKTDELLALGREKG 292
Cdd:TIGR01612 478 SYDIKKDIDENSKQDNTVKLILMRMKDFKDIIDFMELYKPDEVPSKNIIGFDIDQNIKaklyKEIEAGLKESYELAKNWK 557
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 293 NEILELKCNLENKKEEVSRLEEQMNGLktSNEHLQKHVEDL-LTKLK-EAKEQQASMEEKfhnelNAHIKLSNLYKSAAD 370
Cdd:TIGR01612 558 KLIHEIKKELEEENEDSIHLEKEIKDL--FDKYLEIDDEIIyINKLKlELKEKIKNISDK-----NEYIKKAIDLKKIIE 630
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 371 DSEAKSNELT-----------RAVDELHKLLKEagEANKAIQDHLLEV---------EQSKDQME-KEMLEKI-GKLEKE 428
Cdd:TIGR01612 631 NNNAYIDELAkispyqvpehlKNKDKIYSTIKS--ELSKIYEDDIDALynelssivkENAIDNTEdKAKLDDLkSKIDKE 708
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 429 LENVNDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGM----------------KLTELYNAYVETQDQLLLEKLEN 492
Cdd:TIGR01612 709 YDKIQNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEInkdlnkiledfknkekELSNKINDYAKEKDELNKYKSKI 788
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 493 KRI-NKYLDEI----VKEVEAKapilkrqrEEYERAQKAVASLSVKLEQAMKEIQRLQEDTDK-ANKQSSVLERDNQRME 566
Cdd:TIGR01612 789 SEIkNHYNDQInidnIKDEDAK--------QNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDfLNKVDKFINFENNCKE 860
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 567 iQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHL-VSYRNIEELQQQNQRLLVAlrelgeTREREEQ 645
Cdd:TIGR01612 861 -KIDSEHEQFAELTNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIeEEYQNINTLKKVDEYIKIC------ENTKESI 933
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 646 ETTSSKITELQLKLES---ALTELEQLRKSRQHQMQ--LVDSIVRQRDMYRIL-LSQTTGVAIPLHASSLDDISLASTPK 719
Cdd:TIGR01612 934 EKFHNKQNILKEILNKnidTIKESNLIEKSYKDKFDntLIDKINELDKAFKDAsLNDYEAKNNELIKYFNDLKANLGKNK 1013
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 720 RPSTSQTV--STPAPVPVIESTEAIEAK------AALKQLQEIFENYKKEKAEN-EKIQNEQLEKLQEQVTDLRS--QNT 788
Cdd:TIGR01612 1014 ENMLYHQFdeKEKATNDIEQKIEDANKNipnieiAIHTSIYNIIDEIEKEIGKNiELLNKEILEEAEINITNFNEikEKL 1093
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 789 KISTQLDFASKRYEMLQDNVEGYRREITSLHERNQK----LTATTQKQEQIINTM---------TQDLRGANEKLAVAEV 855
Cdd:TIGR01612 1094 KHYNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHhikaLEEIKKKSENYIDEIkaqindledVADKAISNDDPEEIEK 1173
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 856 RAENL-----KKE---KEMLK-LSEVRLSQQRESLLAEQRGQNLLL-TNLQTIqgILERSETETKqrlssqieKLEHEIS 925
Cdd:TIGR01612 1174 KIENIvtkidKKKniyDEIKKlLNEIAEIEKDKTSLEEVKGINLSYgKNLGKL--FLEKIDEEKK--------KSEHMIK 1243
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 926 HLKKKLG--NEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELFKNAQKEIATLKQhLSNMEVQLASQSSQrtgkgq 1003
Cdd:TIGR01612 1244 AMEAYIEdlDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISD-IREKSLKIIEDFSE------ 1316
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1004 psnkedvddlvsqlrqtEEQVNDLKERLKTS-------TSNVEQYRAMVTSLEE--SLNKEKQVTEEVRKNIEVRLKESA 1074
Cdd:TIGR01612 1317 -----------------ESDINDIKKELQKNlldaqkhNSDINLYLNEIANIYNilKLNKIKKIIDEVKEYTKEIEENNK 1379
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1075 EFQTQLEK--KLMEVEKEKQELQDDKRRaIESM--EQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKI 1150
Cdd:TIGR01612 1380 NIKDELDKseKLIKKIKDDINLEECKSK-IESTldDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKN 1458
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1151 AVEAQNKYErelmlHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERE--RMLKDEVSKCVCRCEDL 1228
Cdd:TIGR01612 1459 IEMADNKSQ-----HILKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKElfEQYKKDVTELLNKYSAL 1533
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1229 EKQNKLlhDQIEKLSDKVVASVKEGvqgpLNVSLSEEGKSQEQILEILR-FIRREKEIAETRFEVA-----QVESLRYRQ 1302
Cdd:TIGR01612 1534 AIKNKF--AKTKKDSEIIIKEIKDA----HKKFILEAEKSEQKIKEIKKeKFRIEDDAAKNDKSNKaaidiQLSLENFEN 1607
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1303 RVELLERELQELQDSLNaEREKVQVTAKTMA---QHEELMKKTETMNVVMETNKMLREEKERLE---QDLQQMQAKVRKL 1376
Cdd:TIGR01612 1608 KFLKISDIKKKINDCLK-ETESIEKKISSFSidsQDTELKENGDNLNSLQEFLESLKDQKKNIEdkkKELDELDSEIEKI 1686
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1377 ELDIlPLQEANAELS--EK-SGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKllsekevhTKRIQQLTEEIGR 1453
Cdd:TIGR01612 1687 EIDV-DQHKKNYEIGiiEKiKEIAIANKEEIESIKELIEPTIENLISSFNTNDLEGIDP--------NEKLEEYNTEIGD 1757
|
1370 1380 1390 1400 1410
....*....|....*....|....*....|....*....|....*....|...
gi 966923050 1454 LKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLdAKIIDIQEKVKT 1506
Cdd:TIGR01612 1758 IYEEFIELYNIIAGCLETVSKEPITYDEIKNTRINAQNEF-LKIIEIEKKSKS 1809
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1567-1706 |
6.10e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 6.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1567 KSLESQVENLQ---KTLSEKETEARNLQEQTVQLQselsRLRQDLQDRTTQEEQLRQQiteKEEKTRKAIVAAKSKIAHL 1643
Cdd:COG4913 221 PDTFEAADALVehfDDLERAHEALEDAREQIELLE----PIRELAERYAAARERLAEL---EYLRAALRLWFAQRRLELL 293
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 1644 AGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEG----RISRLERELREHQERHLEQRDE 1706
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnggdRLEQLEREIERLERELEERERR 360
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1056-1699 |
6.14e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.36 E-value: 6.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1056 KQVTEEVRKNI-----EVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRaIESMEQQLSELKKTLSSVQ------NEVQ 1124
Cdd:PRK01156 111 DDTTKYIEKNIlgiskDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILE-INSLERNYDKLKDVIDMLRaeisniDYLE 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1125 EALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQL---- 1200
Cdd:PRK01156 190 EKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLsmel 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1201 ---LECKASWEERERMLKDEVSKCVCRCEDLEKQNKLLHDQIEKLsdkvvasvkEGVQGPLNVSLSEEGKsqeqiLEILR 1277
Cdd:PRK01156 270 eknNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQIL---------SNIDAEINKYHAIIKK-----LSVLQ 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1278 FIRREKEIAETRFEVAQVESLRYRQRvELLERELQELQDSLNAEREKVQVTAKTMAQheelmKKTETMNVVMETNKMLRE 1357
Cdd:PRK01156 336 KDYNDYIKKKSRYDDLNNQILELEGY-EMDYNSYLKSIESLKKKIEEYSKNIERMSA-----FISEILKIQEIDPDAIKK 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1358 EKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLV---SQQKDPDTEEYRKLL 1434
Cdd:PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIInhyNEKKSRLEEKIREIE 489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1435 SE-KEVHTKRIQQLTEEIGRLKAEIARSNASltnnQNLIQSLKEDLNKVRTEKETIqKDLDAKIIDIQEKVKTITQvkKI 1513
Cdd:PRK01156 490 IEvKDIDEKIVDLKKRKEYLESEEINKSINE----YNKIESARADLEDIKIKINEL-KDKHDKYEEIKNRYKSLKL--ED 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1514 GRRYKTQYEELKAQQDKVMETSAQSSGDhqeqhvlvqemqELKETLNQAETKSKSLESQVENLQ----KTLSEKETEARN 1589
Cdd:PRK01156 563 LDSKRTSWLNALAVISLIDIETNRSRSN------------EIKKQLNDLESRLQEIEIGFPDDKsyidKSIREIENEANN 630
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1590 LQEQtvqlqselsrlRQDLQDRTTQEEQLRQQItekeEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKD 1669
Cdd:PRK01156 631 LNNK-----------YNEIQENKILIEKLRGKI----DNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKA 695
|
650 660 670
....*....|....*....|....*....|
gi 966923050 1670 ELdVRITALKSQYEGRISRLERELREHQER 1699
Cdd:PRK01156 696 NR-ARLESTIEILRTRINELSDRINDINET 724
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
959-1415 |
6.55e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 6.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 959 ETNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASQSSQrtgkgqpsnKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNV 1038
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEK---------EEEYAELQEELEELEEELEELEAELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1039 EQYRAMVtSLEESLNKEKQVTEEVR------KNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSEL 1112
Cdd:COG4717 119 EKLEKLL-QLLPLYQELEALEAELAelperlEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1113 KKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEET 1192
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAG 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1193 TQKAESQLLECKASWEERERMLKDEvskcvcrcedlEKQNKLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQI 1272
Cdd:COG4717 278 VLFLVLGLLALLFLLLAREKASLGK-----------EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1273 LEiLRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETN 1352
Cdd:COG4717 347 EE-LQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEAL 425
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923050 1353 KM---------LREEKERLEQDLQQMQAKVRKLELDILPLqEANAELSEKSGMLQAEKKLLEEDVKRWKARN 1415
Cdd:COG4717 426 DEeeleeeleeLEEELEELEEELEELREELAELEAELEQL-EEDGELAELLQELEELKAELRELAEEWAALK 496
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
746-1292 |
7.18e-05 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 48.67 E-value: 7.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 746 AALKQLQEIFENYKKE--KAENEKIQNEQLEKLQEQVTDLRSQNTKIST--QLDFASKRYEMLQDNVEgyrreitSLHER 821
Cdd:PTZ00440 833 EELKQLLQKFPTEDENlnLKELEKEFNENNQIVDNIIKDIENMNKNINIikTLNIAINRSNSNKQLVE-------HLLNN 905
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 822 NQKLTATTQKQEQIINTmtQDLRGANEKLAVAEvraeNLKKEKEML--KLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQ 899
Cdd:PTZ00440 906 KIDLKNKLEQHMKIINT--DNIIQKNEKLNLLN----NLNKEKEKIekQLSDTKINNLKMQIEKTLEYYDKSKENINGND 979
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 900 GI-LERSETETK--QRLSSQIEKLEHEISHLKKKLGNEVEQRHTltrnlDVQLLDTKRQLDTETNLHLNTKELFKNAQKE 976
Cdd:PTZ00440 980 GThLEKLDKEKDewEHFKSEIDKLNVNYNILNKKIDDLIKKQHD-----DIIELIDKLIKEKGKEIEEKVDQYISLLEKM 1054
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 977 IATLKQHLSNMEVQLaSQSSQRTGKGQpSNKEDVDDLVSQLRQTEEQVNDLKERlktSTSNVEQYRAMVTSLEESLNKEK 1056
Cdd:PTZ00440 1055 KTKLSSFHFNIDIKK-YKNPKIKEEIK-LLEEKVEALLKKIDENKNKLIEIKNK---SHEHVVNADKEKNKQTEHYNKKK 1129
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1057 QVTEEVRKNIEVRLKESAEFQTQlEKKLMEVEKEKQELqddKRRAIESMEQQLSELKKTLSSVQNEVQ---EALQRASTA 1133
Cdd:PTZ00440 1130 KSLEKIYKQMEKTLKELENMNLE-DITLNEVNEIEIEY---ERILIDHIVEQINNEAKKSKTIMEEIEsykKDIDQVKKN 1205
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1134 LSNEQQARRDCQEQAKIAVEAQNKYER--ELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKA-------ESQLLECK 1204
Cdd:PTZ00440 1206 MSKERNDHLTTFEYNAYYDKATASYENieELTTEAKGLKGEANRSTNVDELKEIKLQVFSYLQQVikennkmENALHEIK 1285
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1205 ASWE-----ERERMLKdEVSKCVCRCEDLEKQNKLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFI 1279
Cdd:PTZ00440 1286 NMYEflisiDSEKILK-EILNSTKKAEEFSNDAKKELEKTDNLIKQVEAKIEQAKEHKNKIYGSLEDKQIDDEIKKIEQI 1364
|
570
....*....|...
gi 966923050 1280 RreKEIAETRFEV 1292
Cdd:PTZ00440 1365 K--EEISNKRKEI 1375
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1360-1633 |
7.40e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 7.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1360 ERLEQDLQQMQAKVRKLEldilPLQEANAELSEKSGmLQAEKKLLEEDVKRWKA-RNQHLVSQQKDPDTEEYRKLLSEKE 1438
Cdd:COG4913 238 ERAHEALEDAREQIELLE----PIRELAERYAAARE-RLAELEYLRAALRLWFAqRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1439 VHTKRIQQLTEEIGRLKAEIARsnasltNNQNLIQSLKEDLNKVRTEKETIQKDLDakiidiqekvKTITQVKKIGRRYK 1518
Cdd:COG4913 313 RLEARLDALREELDELEAQIRG------NGGDRLEQLEREIERLERELEERERRRA----------RLEALLAALGLPLP 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1519 TQYEELKAQQDKVMEtsaqssgdhqeqhvLVQEMQELKETLNQAETKsksLESQVENLQKTLSEKETEARNLQEQTVQLQ 1598
Cdd:COG4913 377 ASAEEFAALRAEAAA--------------LLEALEEELEALEEALAE---AEAALRDLRRELRELEAEIASLERRKSNIP 439
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 966923050 1599 SELSRLRQDLQDRTTQ-EEQLR-----QQITEKEEKTRKAI 1633
Cdd:COG4913 440 ARLLALRDALAEALGLdEAELPfvgelIEVRPEEERWRGAI 480
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1160-1703 |
7.53e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 7.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1160 RELMLHAADV-EALQAAKEQVSKMASVRQHLEETTQKAEsQLLECKASWEERERmLKDEVSKCVcRCEDL------EKQN 1232
Cdd:COG4913 214 REYMLEEPDTfEAADALVEHFDDLERAHEALEDAREQIE-LLEPIRELAERYAA-ARERLAELE-YLRAAlrlwfaQRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1233 KLLHDQIEKLSDKvvasvKEGVQGPLNVSLSEEGKSQEQILEILRFIRR---------EKEIAETRFEVAQVE--SLRYR 1301
Cdd:COG4913 291 ELLEAELEELRAE-----LARLEAELERLEARLDALREELDELEAQIRGnggdrleqlEREIERLERELEERErrRARLE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1302 QRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMETNkmLREEKERLEQDLQQMQAkvRKLELDiL 1381
Cdd:COG4913 366 ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD--LRRELRELEAEIASLER--RKSNIP-A 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1382 PLQEANAELSEKSGMLQAEKKLLEE--DVK----RWKA------RNQH---LVSQQKDPD-TEEYRKLLSEKEVHTKRIQ 1445
Cdd:COG4913 441 RLLALRDALAEALGLDEAELPFVGEliEVRpeeeRWRGaiervlGGFAltlLVPPEHYAAaLRWVNRLHLRGRLVYERVR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1446 QLTEEIGRLKA---------EIARS------NASLTNNQNLIQ--SLkEDLNKVR---TEKETIQKDLDAKIIDIQEKVK 1505
Cdd:COG4913 521 TGLPDPERPRLdpdslagklDFKPHpfrawlEAELGRRFDYVCvdSP-EELRRHPraiTRAGQVKGNGTRHEKDDRRRIR 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1506 TITQvkkIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLNQ------AETKSKSLESQVENLQKT 1579
Cdd:COG4913 600 SRYV---LGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswDEIDVASAEREIAELEAE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1580 LSEKET---EARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAivaaksKIAHLAGVKDQLTKENEE 1656
Cdd:COG4913 677 LERLDAssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDEL------QDRLEAAEDLARLELRAL 750
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 966923050 1657 LKQRNGALDQQKDELDVR--ITALKSQYEGRISRLERELREHQERHLEQ 1703
Cdd:COG4913 751 LEERFAAALGDAVERELRenLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
308-857 |
8.12e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.97 E-value: 8.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 308 EVSRLEEQMNGLKTSNEHLQKHV---EDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVD 384
Cdd:PRK01156 160 EINSLERNYDKLKDVIDMLRAEIsniDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKS 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 385 ELHKLLKEAGEANKAIQDhlLEVEQSKDQMEKEMLEKIGKLEKELE---------NVNDLLSATKRKGAILSEEELaaMS 455
Cdd:PRK01156 240 ALNELSSLEDMKNRYESE--IKTAESDLSMELEKNNYYKELEERHMkiindpvykNRNYINDYFKYKNDIENKKQI--LS 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 456 PTAAAVAKIVKPGMKLTELYNAYvetqDQLLLEKLENKRINKYLDEI----------VKEVEAKapilKRQREEYERAQK 525
Cdd:PRK01156 316 NIDAEINKYHAIIKKLSVLQKDY----NDYIKKKSRYDDLNNQILELegyemdynsyLKSIESL----KKKIEEYSKNIE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 526 avaslsvKLEQAMKEIQRLQE-DTDKANKQSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGN-HVIRDEEVSSADIS 603
Cdd:PRK01156 388 -------RMSAFISEILKIQEiDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNmEMLNGQSVCPVCGT 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 604 SSSEVISQHLVSYRN-----IEELQQQNQRLLVALRELGETREREEQETTSSKITELQL---KLESALTELEQLR----- 670
Cdd:PRK01156 461 TLGEEKSNHIINHYNekksrLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINeynKIESARADLEDIKikine 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 671 -----------KSRQHQMQLVDsIVRQRDMYRILLSQTTGVAIPLHASSLDDISLASTPKRPSTSQTVS--------TPA 731
Cdd:PRK01156 541 lkdkhdkyeeiKNRYKSLKLED-LDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIgfpddksyIDK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 732 PVPVIES---------TEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEkLQEQVTDLRSQNTKISTQLDFASKRYE 802
Cdd:PRK01156 620 SIREIENeannlnnkyNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKE-ITSRINDIEDNLKKSRKALDDAKANRA 698
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 803 MLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMTqDLRGANEKLAVAEVRA 857
Cdd:PRK01156 699 RLESTIEILRTRINELSDRINDINETLESMKKIKKAIG-DLKRLREAFDKSGVPA 752
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
88-350 |
9.08e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.71 E-value: 9.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 88 TELNKLPKSVQNkLEKFLADQQSEIDGLKGR----------HEKFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLE 157
Cdd:TIGR04523 419 QEKELLEKEIER-LKETIIKNNSEIKDLTNQdsvkeliiknLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 158 LEKLSNQLKALTEKNKELEiaqdrniAIQSQFTRTKEELEAEKRdlirtneRLSQELEYSTEDVKRLNEKLKESNtTKGE 237
Cdd:TIGR04523 498 LKKLNEEKKELEEKVKDLT-------KKISSLKEKIEKLESEKK-------EKESKISDLEDELNKDDFELKKEN-LEKE 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 238 LQLKLDELqasdvsvkyreKRLEQEKELLHSQNTWLNTELKTKTDELLALGRE---KGNEILELKCNLENKKEEVSRLEE 314
Cdd:TIGR04523 563 IDEKNKEI-----------EELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEieeKEKKISSLEKELEKAKKENEKLSS 631
|
250 260 270
....*....|....*....|....*....|....*.
gi 966923050 315 QMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEK 350
Cdd:TIGR04523 632 IIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKK 667
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
927-1378 |
9.52e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 9.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 927 LKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASQSSQRTGKGQpsn 1006
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK--- 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1007 KEDVDDLVSQLRQTEEQVNDLKERLktstsnveqyramvtsleESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLME 1086
Cdd:COG4717 124 LLQLLPLYQELEALEAELAELPERL------------------EELEERLEELRELEEELEELEAELAELQEELEELLEQ 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1087 VEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVqEALQRASTALSNEQQARRDCQEQAK-----------IAVEAQ 1155
Cdd:COG4717 186 LSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL-EELEEELEQLENELEAAALEERLKEarlllliaaalLALLGL 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1156 NKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERM------------LKDEVSKCVC 1223
Cdd:COG4717 265 GGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEellaalglppdlSPEELLELLD 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1224 RCEDLEKQNKLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQR 1303
Cdd:COG4717 345 RIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEA 424
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 1304 VELLE--RELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVVMEtnkmLREEKERLEQDLQQMQAKVRKLEL 1378
Cdd:COG4717 425 LDEEEleEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAE----LLQELEELKAELRELAEEWAALKL 497
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1077-1703 |
9.87e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 9.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1077 QTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEaLQRASTALSNEQqaRRDCQEQAKIAVEAQN 1156
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQE-MQMERDAMADIR--RRESQSQEDLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1157 --------KYERELMLHAADVEALQAAKEQVSK---MASVRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVcrc 1225
Cdd:pfam15921 150 tvheleaaKCLKEDMLEDSNTQIEQLRKMMLSHegvLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKIL--- 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1226 EDLEKQNKLLHDQIEKLSDKVVAsvkegvqgplnvsLSEEGKSQEQILEILRFIRREKEIAETRFEVAQveslryrqrVE 1305
Cdd:pfam15921 227 RELDTEISYLKGRIFPVEDQLEA-------------LKSESQNKIELLLQQHQDRIEQLISEHEVEITG---------LT 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1306 LLERELQELQDSLNAEREKVQVTAKTmaQHEELMKK-TETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQ 1384
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARN--QNSMYMRQlSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEAR 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1385 EANAELSEKSGMLQAE-KKLLEEDVKRWKARNQHLVSQQK--DPDT------EEYRKLLSEKEVHTKRIQQLTE------ 1449
Cdd:pfam15921 363 TERDQFSQESGNLDDQlQKLLADLHKREKELSLEKEQNKRlwDRDTgnsitiDHLRRELDDRNMEVQRLEALLKamksec 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1450 --EIGRLKAEIARSNASLTNNQNL---IQSLKEDLNKVRTE-------KETIQKDLDAKIIDIQEKVKTI----TQVKKI 1513
Cdd:pfam15921 443 qgQMERQMAAIQGKNESLEKVSSLtaqLESTKEMLRKVVEEltakkmtLESSERTVSDLTASLQEKERAIeatnAEITKL 522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1514 GRRYKTQYEELKaqqdkvmetSAQSSGDHQEQhvLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQ 1593
Cdd:pfam15921 523 RSRVDLKLQELQ---------HLKNEGDHLRN--VQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVE 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1594 TVQLQSELSRLRQDLQD-------RTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVK---DQLTKENEELKQRNGA 1663
Cdd:pfam15921 592 KAQLEKEINDRRLELQEfkilkdkKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKqerDQLLNEVKTSRNELNS 671
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 966923050 1664 LDQQKDELDVRITALKSQYEGRISRLERELREHQErHLEQ 1703
Cdd:pfam15921 672 LSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS-ELEQ 710
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
354-1195 |
1.13e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.83 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 354 ELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMekemlekigkleKELENVN 433
Cdd:PTZ00121 1061 EAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAK------------KKAEDAR 1128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 434 DLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRInkylDEIVKEVEAKAPIL 513
Cdd:PTZ00121 1129 KAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKA----EELRKAEDARKAEA 1204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 514 KRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIRVLLMELEEAR-GNHVI 592
Cdd:PTZ00121 1205 ARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARkADELK 1284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 593 RDEEVSSADISSSSEVIsqhlvsyRNIEELQQQNQrllvalrelgetrereeqetTSSKITELQLKLESALTELEQLRKS 672
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEK-------KKADEAKKKAE--------------------EAKKADEAKKKAEEAKKKADAAKKK 1337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 673 RQHQMQLVDSIVRQRDMYRILLSQTTGVAiplhasslddislASTPKRPSTSQTVSTPAPVPVIESTEAIEAKAALKQLQ 752
Cdd:PTZ00121 1338 AEEAKKAAEAAKAEAEAAADEAEAAEEKA-------------EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 753 EIFENYKKekAENEKIQNEQLEKLQEQVTdlrsqntkistQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQ 832
Cdd:PTZ00121 1405 KKADELKK--AAAAKKKADEAKKKAEEKK-----------KADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 833 EQIINTMTQDLRGANEklavAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQnllltnlqtiqgiLERSETETKQR 912
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADE----AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKK-------------ADEAKKAEEAK 1534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 913 LSSQIEKLEheishlKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELFKNAQKeiatlkqhlsnmevqla 992
Cdd:PTZ00121 1535 KADEAKKAE------EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE----------------- 1591
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 993 sqssQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTstsnvEQYRAMVTSLEESLNKEKQVTEEVRKNIEV---- 1068
Cdd:PTZ00121 1592 ----ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA-----EEEKKKVEQLKKKEAEEKKKAEELKKAEEEnkik 1662
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1069 --RLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESmEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQE 1146
Cdd:PTZ00121 1663 aaEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE-AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE 1741
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 966923050 1147 QAKIAVEAQ-NKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQK 1195
Cdd:PTZ00121 1742 DKKKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
78-290 |
1.24e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 78 AAVLQQVLERTELNKLPKSVQNKL---EKFLADQQSEIDGLKGRHEkfkvESEQQYFEIEKRLSHSQERLVNETRECQSL 154
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIaelEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 155 RLELEKLSNQLKALTEKNKELEIAQDRNiaiqSQFTRTKEELEAEK-RDLIRTNERLSQELEYSTEDVKRLNEKLKESNT 233
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRL----GRQPPLALLLSPEDfLDAVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 234 TKGELQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALGRE 290
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
194-1072 |
1.36e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 194 EELEAEKRDLIRTNERLSQELEYSTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYRE-KRLEQEKELLHSQNTw 272
Cdd:PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDaKKAEAARKAEEVRKA- 1190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 273 lnTELKTKTDELLALGREKGNEilelkcnlENKKEEVSRLEEQMNGLKTsnehlqKHVEDLLTKLKEAKEQqasmEEKFH 352
Cdd:PTZ00121 1191 --EELRKAEDARKAEAARKAEE--------ERKAEEARKAEDAKKAEAV------KKAEEAKKDAEEAKKA----EEERN 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 353 NELNAHIKLSNLYKSAADDSEAKSNElTRAVDELHKL--LKEAGEANKAiqDHLLEVEQSKDQMEKEmlEKIGKLEKELE 430
Cdd:PTZ00121 1251 NEEIRKFEEARMAHFARRQAAIKAEE-ARKADELKKAeeKKKADEAKKA--EEKKKADEAKKKAEEA--KKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 431 NVNDLLSATKRKG--AILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKLENKRINKYLDEIVKEVEA 508
Cdd:PTZ00121 1326 EAKKKADAAKKKAeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 509 KAPILKRQREEYERAQ--KAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIRVLLMELEEA 586
Cdd:PTZ00121 1406 KADELKKAAAAKKKADeaKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA 1485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 587 RGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQrllvaLRELGETREREEQETTSSKITELQLKLESALTEL 666
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE-----AKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 667 EQLRKSRQHQMQLVDSIVRQRdmyrillsqttgvaiplhasSLDDISLASTPKRPSTSQTVSTPAPVPVIESTEAIEAKA 746
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALR--------------------KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 747 ALKQLQEIFENYK-----KEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQldfASKRYEMLQDNVEGYRREitslHER 821
Cdd:PTZ00121 1621 KAEELKKAEEEKKkveqlKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE---DKKKAEEAKKAEEDEKKA----AEA 1693
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 822 NQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVR---AENLKKEKEMLKLSEVRLSQQRESllaEQRGQNLLLTNLQTI 898
Cdd:PTZ00121 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENkikAEEAKKEAEEDKKKAEEAKKDEEE---KKKIAHLKKEEEKKA 1770
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 899 QGILERSETETKQRLSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNLHLNTKELFKNAQKEIA 978
Cdd:PTZ00121 1771 EEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFE 1850
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 979 TLKQHLSNMEVQlaSQSSQRTGKGQPSNKEDVDDLVSQLRQTEE-QVNDLKERLKTSTSNVEQYRAMVTSLEESLNKEKQ 1057
Cdd:PTZ00121 1851 KHKFNKNNENGE--DGNKEADFNKEKDLKEDDEEEIEEADEIEKiDKDDIEREIPNNNMAGKNNDIIDDKLDKDEYIKRD 1928
|
890
....*....|....*
gi 966923050 1058 VTEEVRKNIEVRLKE 1072
Cdd:PTZ00121 1929 AEETREEIIKISKKD 1943
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1551-1765 |
1.36e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1551 EMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEK----- 1625
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERaraly 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1626 -------------------------------EEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDvr 1674
Cdd:COG3883 97 rsggsvsyldvllgsesfsdfldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE-- 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1675 itALKSQYEGRISRLERELREHQER---HLEQRDEPQEPSNKVPEQQRQITLKTTPASGERGIASTSDPPTANIKPTPVV 1751
Cdd:COG3883 175 --AQQAEQEALLAQLSAEEAAAEAQlaeLEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAA 252
|
250
....*....|....
gi 966923050 1752 STPSKVTAAALAGN 1765
Cdd:COG3883 253 GAAGAAAGSAGAAG 266
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
105-293 |
1.62e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 105 LADQQSEIDGLKGRHEKFK-VESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKALTEKNKELEiaqdrnI 183
Cdd:COG4913 257 IRELAERYAAARERLAELEyLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELE------A 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 184 AIQSQFTRTKEELEAEKRDLIRTNERLSQELEYSTEDVKRLNEKLkesNTTKGELQLKLDELQASDVSVKYREKRLEQEK 263
Cdd:COG4913 331 QIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPL---PASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
170 180 190
....*....|....*....|....*....|
gi 966923050 264 ELLHSQNTWLNTELKTKTDELLALGREKGN 293
Cdd:COG4913 408 AEAEAALRDLRRELRELEAEIASLERRKSN 437
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
891-1135 |
1.82e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 891 LLTNLQTIQGILERSETETKQR-LSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDT-KRQLDTETNLHLNTKE 968
Cdd:COG4913 230 LVEHFDDLERAHEALEDAREQIeLLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELlEAELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 969 LFKNAQKEIATLKQHLSNMEVQLASQSSQRtgkgqpsnkedvddlvsqLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSL 1048
Cdd:COG4913 310 ELERLEARLDALREELDELEAQIRGNGGDR------------------LEQLEREIERLERELEERERRRARLEALLAAL 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1049 EESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAiesmEQQLSELKKTLSSVQNEVQEALQ 1128
Cdd:COG4913 372 GLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL----EAEIASLERRKSNIPARLLALRD 447
|
....*..
gi 966923050 1129 RASTALS 1135
Cdd:COG4913 448 ALAEALG 454
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1322-1721 |
2.10e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1322 REKVQVTAKTMAQHEELMkkTETMNVVmeTNKMLREEKER---LEQDL---QQMQAKVRKLELDilplQEANAELSEKSG 1395
Cdd:PRK04863 246 LEAIRVTQSDRDLFKHLI--TESTNYV--AADYMRHANERrvhLEEALelrRELYTSRRQLAAE----QYRLVEMARELA 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1396 MLQAEKKLLEEDvkrWKARNQHLVSqqkdpdteeyrkllsekeVHTKRIQQltEEIGRLKAEIARSNASLTNNQNLIQSL 1475
Cdd:PRK04863 318 ELNEAESDLEQD---YQAASDHLNL------------------VQTALRQQ--EKIERYQADLEELEERLEEQNEVVEEA 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1476 KEDLNKVRTEKETIQKDLD---AKIIDIQEKVktITQVKKIG--RRYKTQYEELKAQQDkVMETSAQSSGDHQEQhvLVQ 1550
Cdd:PRK04863 375 DEQQEENEARAEAAEEEVDelkSQLADYQQAL--DVQQTRAIqyQQAVQALERAKQLCG-LPDLTADNAEDWLEE--FQA 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1551 EMQELKETLNQAETKSKSLE----------------------SQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDL 1608
Cdd:PRK04863 450 KEQEATEELLSLEQKLSVAQaahsqfeqayqlvrkiagevsrSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1609 QDRTTQeEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQ------Y 1682
Cdd:PRK04863 530 RQQQRA-ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARapawlaA 608
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 966923050 1683 EGRISRLERELREHQE----------RHLEQRDEPQEPSNKVPEQQRQI 1721
Cdd:PRK04863 609 QDALARLREQSGEEFEdsqdvteymqQLLERERELTVERDELAARKQAL 657
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1560-1691 |
2.21e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.31 E-value: 2.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1560 NQAETKSKSLESQVEnlqKTLSEKETEARNL-QEQTVQLQSELSRLRQDLQDRTTQEeqlRQQITEKEEKTRKaivaaks 1638
Cdd:PRK12704 27 KIAEAKIKEAEEEAK---RILEEAKKEAEAIkKEALLEAKEEIHKLRNEFEKELRER---RNELQKLEKRLLQ------- 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 966923050 1639 KIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLER 1691
Cdd:PRK12704 94 KEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
1478-1580 |
2.32e-04 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 46.21 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1478 DLNKVRTEKETIQKDLDAK--IIDIQEKVKTITQVKKIgrryKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQEL 1555
Cdd:PRK05431 3 DIKLIRENPEAVKEALAKRgfPLDVDELLELDEERREL----QTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKEL 78
|
90 100
....*....|....*....|....*
gi 966923050 1556 KETLNQAETKSKSLESQVENLQKTL 1580
Cdd:PRK05431 79 KEEIKALEAELDELEAELEELLLRI 103
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1389-1635 |
2.44e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1389 ELSEKSGMLQAEKKLLEEDVKrwkARNQHLVSQQKDPDTEEYRKllsekevhTKRIQQLTEEIGRLKAEIARSNASLTNN 1468
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIK---TYNKNIEEQRKKNGENIARK--------QNKYDELVEEAKTIKAEIEELTDELLNL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1469 QNLIQSLKEDLNKVRTEKETIQKDLD--AKII--------------DIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVM 1532
Cdd:PHA02562 247 VMDIEDPSAALNKLNTAAAKIKSKIEqfQKVIkmyekggvcptctqQISEGPDRITKIKDKLKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1533 EtsaqssgdhqeqhvLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRT 1612
Cdd:PHA02562 327 E--------------IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIV 392
|
250 260
....*....|....*....|...
gi 966923050 1613 TQEEQLrqqiteKEEKTRKAIVA 1635
Cdd:PHA02562 393 KTKSEL------VKEKYHRGIVT 409
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1548-1671 |
2.48e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 45.73 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1548 LVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEE 1627
Cdd:PRK09039 58 LNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALA 137
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 1628 KT---RKAIVAAKSKIAHLAGVKDQLTKENEE-------LKQR-NGALDQQKDEL 1671
Cdd:PRK09039 138 QVellNQQIAALRRQLAALEAALDASEKRDREsqakiadLGRRlNVALAQRVQEL 192
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1426-1721 |
2.75e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.27 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1426 DTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEketiqkdldakiidiqEKVK 1505
Cdd:pfam17380 297 EQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE----------------ERKR 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1506 TITQVKKigrryktqyEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKEt 1585
Cdd:pfam17380 361 ELERIRQ---------EEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQE- 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1586 EARNLQEQTVQLQS--ELSRLRQDLQDRTTQEEQLRQQiteKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGA 1663
Cdd:pfam17380 431 EARQREVRRLEEERarEMERVRLEEQERQQQVERLRQQ---EEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQA 507
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 1664 LDQQKD-------ELDVRITALKSQYEGRISRLERElrehQERHLEQRDEPQEPSNKVPEQQRQI 1721
Cdd:pfam17380 508 MIEEERkrkllekEMEERQKAIYEEERRREAEEERR----KQQEMEERRRIQEQMRKATEERSRL 568
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
913-1125 |
2.84e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 913 LSSQIEKLEHEISHLKKKLgneveqrHTLTRNLDVQLLDTKRQLDTETNLHLNTKELFKNAQKEIATLKQHLSNMEVQLA 992
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQQI-------KTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 993 SQSSQ----RTGKGQPSNK-EDVDDLV-------------SQLRQTEEQVNDLKERLKTSTsnvEQYRAMVTSLEESLNK 1054
Cdd:PHA02562 252 DPSAAlnklNTAAAKIKSKiEQFQKVIkmyekggvcptctQQISEGPDRITKIKDKLKELQ---HSLEKLDTAIDELEEI 328
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923050 1055 EKQVTEEVRKNIEVRLKESAEFQT--QLEKKLMEVEKEKQELQD---DKRRAIESMEQQLSELKKTLSSVQNEVQE 1125
Cdd:PHA02562 329 MDEFNEQSKKLLELKNKISTNKQSliTLVDKAKKVKAAIEELQAefvDNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1060-1720 |
2.91e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.32 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1060 EEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESM--EQQL----SELKKTLSSVQNEVQEALQRASTA 1133
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLqaETELcaeaEEMRARLAARKQELEEILHELESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1134 LSNEQQARRDCQEQAKiaveaqnkyerELMLHAADVEalqaakEQVSKMASVRQHLEETTQKAESQLleckASWEERERM 1213
Cdd:pfam01576 84 LEEEEERSQQLQNEKK-----------KMQQHIQDLE------EQLDEEEAARQKLQLEKVTTEAKI----KKLEEDILL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1214 LKDEVSKcvcrcedLEKQNKLLHDQIEKLSD---------KVVASVK---EGVQGPLNVSLSEEGKSQEQILEILRfiRR 1281
Cdd:pfam01576 143 LEDQNSK-------LSKERKLLEERISEFTSnlaeeeekaKSLSKLKnkhEAMISDLEERLKKEEKGRQELEKAKR--KL 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1282 EKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAEREKVQVTAkTMAQHEELMKKTETMNVVMETNKMLREEKER 1361
Cdd:pfam01576 214 EGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNN-ALKKIRELEAQISELQEDLESERAARNKAEK 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1362 LEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAE-KKLLEEDVKRWKARNQHLvsqqkdpdteeyrkllseKEVH 1440
Cdd:pfam01576 293 QRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTElKKALEEETRSHEAQLQEM------------------RQKH 354
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1441 TKRIQQLTEEI---GRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVK-KIGRR 1516
Cdd:pfam01576 355 TQALEELTEQLeqaKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRaELAEK 434
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1517 YKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLnQAETKSK--------SLESQVENLQKTLSEKETEAR 1588
Cdd:pfam01576 435 LSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELL-QEETRQKlnlstrlrQLEDERNSLQEQLEEEEEAKR 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1589 NLQEQTVQLQSELSRLRQDLQDRTTQEEQLRqqitEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQR----NGAL 1664
Cdd:pfam01576 514 NVERQLSTLQAQLSDMKKKLEEDAGTLEALE----EGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQElddlLVDL 589
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966923050 1665 DQQK-------------DELDVRITALKSQYEGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQ 1720
Cdd:pfam01576 590 DHQRqlvsnlekkqkkfDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERT 658
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
99-587 |
2.93e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 99 NKLEKFLADQQSEIDglkgRHEKFKVESEQQYFEIEKRLSHSQERLvnetRECQSLRLELEKLSnqlKALTEKNKELEIA 178
Cdd:PRK02224 209 NGLESELAELDEEIE----RYEEQREQARETRDEADEVLEEHEERR----EELETLEAEIEDLR---ETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 179 QDRniaIQSQfTRTKEELEAEKRDLIrtnerlsQELEYSTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKR 258
Cdd:PRK02224 278 AEE---VRDL-RERLEELEEERDDLL-------AEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 259 LEQEKELLHSQNTwlntELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLK 338
Cdd:PRK02224 347 LREDADDLEERAE----ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 339 EAKEQQASMEEKFHNELNAhiklsnLYKSAADDSEAKSNELTRAVDElHKLLKEAGEANKAIQDHLLEVEQSKDQMEkem 418
Cdd:PRK02224 423 ELREREAELEATLRTARER------VEEAEALLEAGKCPECGQPVEG-SPHVETIEEDRERVEELEAELEDLEEEVE--- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 419 lekigKLEKELENVNDLLSATKRKGAILSEEELAAmsptaaavakivkpgmKLTELYNAYVETQDqlllEKLENKRINKy 498
Cdd:PRK02224 493 -----EVEERLERAEDLVEAEDRIERLEERREDLE----------------ELIAERRETIEEKR----ERAEELRERA- 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 499 lDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRL--------------QEDTDKANKQSSVLERDNQR 564
Cdd:PRK02224 547 -AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLerirtllaaiadaeDEIERLREKREALAELNDER 625
|
490 500
....*....|....*....|...
gi 966923050 565 MEiQIKDLSQQIRVLLMELEEAR 587
Cdd:PRK02224 626 RE-RLAEKRERKRELEAEFDEAR 647
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
153-428 |
3.21e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 45.29 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 153 SLRLELEKLSNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQELEYSTEDVKRLNEKLKESN 232
Cdd:COG1340 5 ELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELKEERDELN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 233 TTKGELQLKLDELQASDVSVKYREKRLEQEKELLHSqntwLNTELKTKTdellaLGREKGNEILElkcnlenkkeEVSRL 312
Cdd:COG1340 85 EKLNELREELDELRKELAELNKAGGSIDKLRKEIER----LEWRQQTEV-----LSPEEEKELVE----------KIKEL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 313 EEQMNGLKTSNEhLQKHVEDLLTKLKEAKEQQasmeEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKE 392
Cdd:COG1340 146 EKELEKAKKALE-KNEKLKELRAELKELRKEA----EEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVE 220
|
250 260 270
....*....|....*....|....*....|....*.
gi 966923050 393 AGEANKAIQDHLLEVEQSKDQMEKEMLEKIGKLEKE 428
Cdd:COG1340 221 AQEKADELHEEIIELQKELRELRKELKKLRKKQRAL 256
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
127-624 |
3.77e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.12 E-value: 3.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 127 EQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKALTEKNKELEIAQD--RNIAIQSQFTRTKEELEAEKRDLI 204
Cdd:TIGR00618 238 TQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKaaPLAAHIKAVTQIEQQAQRIHTELQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 205 RTNERLSQELEYSTEDVKRLNEKLKESNTTKGELQLKLDELQASDVSVKYREKrLEQEKELLHSQNTW------LNTELK 278
Cdd:TIGR00618 318 SKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREI-SCQQHTLTQHIHTLqqqkttLTQKLQ 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 279 TKTDELLALGREKGnEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAH 358
Cdd:TIGR00618 397 SLCKELDILQREQA-TIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 359 IKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKAIQD-HLLEVEQSKDQmekEMLEKIGKLEKELENVNDLLS 437
Cdd:TIGR00618 476 QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDiDNPGPLTRRMQ---RGEQTYAQLETSEEDVYHQLT 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 438 ATKRKGAILSEEELAAMSPTaaavakivkpgMKLTELYNAYVETQDQLLleklenKRINKYLDEIVKEVEAKAPILKRQR 517
Cdd:TIGR00618 553 SERKQRASLKEQMQEIQQSF-----------SILTQCDNRSKEDIPNLQ------NITVRLQDLTEKLSEAEDMLACEQH 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 518 EEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVL---ERDNQRMEIQIKDLSQQIRVLLMELEEARGNHVIRD 594
Cdd:TIGR00618 616 ALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTqerVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYW 695
|
490 500 510
....*....|....*....|....*....|
gi 966923050 595 EEVSSADISSSSEVISQHLVSYRNIEELQQ 624
Cdd:TIGR00618 696 KEMLAQCQTLLRELETHIEEYDREFNEIEN 725
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1007-1674 |
4.73e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 4.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1007 KEDVDDLVS---QLRQTEEQVNDLK------ERLKTSTSNVEQYRAMVTSL-----EESLNKEKQVTEEVRKNIEVRLKE 1072
Cdd:COG4913 231 VEHFDDLERaheALEDAREQIELLEpirelaERYAAARERLAELEYLRAALrlwfaQRRLELLEAELEELRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1073 SAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQN---EVQEALQRASTALSNEQQA----RRDCQ 1145
Cdd:COG4913 311 LERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERrraRLEALLAALGLPLPASAEEfaalRAEAA 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1146 EQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSK---------------MASVRQHLEETTQKAESQ------LLECK 1204
Cdd:COG4913 391 ALLEALEEELEALEEALAEAEAALRDLRRELRELEAeiaslerrksniparLLALRDALAEALGLDEAElpfvgeLIEVR 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1205 ---ASWE---ERE------RMLKDEvskcvcrcEDLEKQNKLLHDqiEKLSDKVVAS-VKEGVQGPLNVSLSEEGksqeq 1271
Cdd:COG4913 471 peeERWRgaiERVlggfalTLLVPP--------EHYAAALRWVNR--LHLRGRLVYErVRTGLPDPERPRLDPDS----- 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1272 ILEILRF----IRR--EKEIAEtRFEVAQVESL----RY---------------------RQRVELLERELQELQDSLNA 1320
Cdd:COG4913 536 LAGKLDFkphpFRAwlEAELGR-RFDYVCVDSPeelrRHpraitragqvkgngtrhekddRRRIRSRYVLGFDNRAKLAA 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1321 EREKVQVTAKTMAQHEELMKKTETmnvVMETNKMLREEKERLEQ------DLQQMQAKVRKLELDILPLQEANAELSEks 1394
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEA---ELDALQERREALQRLAEyswdeiDVASAEREIAELEAELERLDASSDDLAA-- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1395 gmlqaekklLEEDVKRWKARNQHLvsqqkdpdTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARsnASLTNNQNLIQS 1474
Cdd:COG4913 690 ---------LEEQLEELEAELEEL--------EEELDELKGEIGRLEKELEQAEEELDELQDRLEA--AEDLARLELRAL 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1475 LKEDLNKVRTEK--ETIQKDLDAKIIDIQEKV-KTITQVKKIGRRYKTQYEELKAQQDkvmeTSAQSSGDHQ------EQ 1545
Cdd:COG4913 751 LEERFAAALGDAveRELRENLEERIDALRARLnRAEEELERAMRAFNREWPAETADLD----ADLESLPEYLalldrlEE 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1546 HVLVQEMQELKETLNQAETKSkslesqVENLQKTLsekETEARNLQEQTVQLQSEL--------SRLRQDLQDRTTQE-E 1616
Cdd:COG4913 827 DGLPEYEERFKELLNENSIEF------VADLLSKL---RRAIREIKERIDPLNDSLkripfgpgRYLRLEARPRPDPEvR 897
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 966923050 1617 QLRQQITEKEEK-TRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNgaldqQKDELDVR 1674
Cdd:COG4913 898 EFRQELRAVTSGaSLFDEELSEARFAALKRLIERLRSEEEESDRRW-----RARVLDVR 951
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1520-1695 |
5.07e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 5.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1520 QYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKEtlNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQS 1599
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSV--KSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQ 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1600 ELSRLR---------QDLQDRTT-----------------QEEQLRQQITEKEEKTRKAIVaakskiahLAGVKDQLTKE 1653
Cdd:PRK05771 122 EIERLEpwgnfdldlSLLLGFKYvsvfvgtvpedkleelkLESDVENVEYISTDKGYVYVV--------VVVLKELSDEV 193
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 966923050 1654 NEELKQrngaLDQQKDELDVRITA--LKSQYEGRISRLERELRE 1695
Cdd:PRK05771 194 EEELKK----LGFERLELEEEGTPseLIREIKEELEEIEKERES 233
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1428-1681 |
5.96e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.45 E-value: 5.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1428 EEYRKLLSEKEVHTKRIQQltEEIGRLKAEIARSNASLTNNQNLIQSLKeDLNKVRTEK------ETIQKDLDA--KIID 1499
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKR--EKKLRETEEVEFSLKAEVLIQKFGRSLK-AKKRFSLLKketiylQSAQRVELAerQLQE 886
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1500 IQEKVKTITQVKKIGRRYKTQYEELKAQQDKV---------------------METSAQSSGDHQEQHV---LVQEMQEL 1555
Cdd:COG5022 887 LKIDVKSISSLKLVNLELESEIIELKKSLSSDlienlefkteliarlkkllnnIDLEEGPSIEYVKLPElnkLHEVESKL 966
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1556 KETLNQAETKSKSLESQVENLQKTLSEketearnlQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTR--KAI 1633
Cdd:COG5022 967 KETSEEYEDLLKKSTILVREGNKANSE--------LKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKiiSSE 1038
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 966923050 1634 VAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQ 1681
Cdd:COG5022 1039 STELSILKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQL 1086
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
844-1497 |
6.00e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.52 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 844 RGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETK---QRLSSQIEKL 920
Cdd:PTZ00121 1207 KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKaeeARKADELKKA 1286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 921 EHEISHLKKKLGNEVEQRHTLTRNLD----VQLLDTKRQLDTETNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASQSS 996
Cdd:PTZ00121 1287 EEKKKADEAKKAEEKKKADEAKKKAEeakkADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 997 QRTGKGQPSNKEDVDDLVSQLRQTE--EQVNDLKERLKTSTSNVEQYRAMVTSLEESlnkeKQVTEEVRKNIEVRLKESA 1074
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKkaDEAKKKAEEDKKKADELKKAAAAKKKADEA----KKKAEEKKKADEAKKKAEE 1442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1075 EFQTQLEKKLMEVEKEKQELQ---DDKRRAIESMEQqlSELKKTLSSVQNEVQEALQRASTALSNEQQARRdcQEQAKIA 1151
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKkkaEEAKKADEAKKK--AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK--ADEAKKA 1518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1152 VEAQNKYERELMLHAADVEALQAAkEQVSKMASVRQhLEETTQKAESQLLECKASWEERERML--------KDEVSKCVC 1223
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKA-EEKKKADELKK-AEELKKAEEKKKAEEAKKAEEDKNMAlrkaeeakKAEEARIEE 1596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1224 RCEDLEKQNKLLHDQIEKLSD--------KVVASVKEGVQgPLNVSLSEEGKSQEQI--LEILRFIRREKEIAETRFEVA 1293
Cdd:PTZ00121 1597 VMKLYEEEKKMKAEEAKKAEEakikaeelKKAEEEKKKVE-QLKKKEAEEKKKAEELkkAEEENKIKAAEEAKKAEEDKK 1675
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1294 QVESLRYRQRVELLERELQELQDSLNAEREKVQVTAKTMAQHEELMKKTETMNVV---------------METNKMLREE 1358
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIkaeeakkeaeedkkkAEEAKKDEEE 1755
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1359 KERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLE-----EDVKRWKARNQHLVSQQKDPDTEEYRKL 1433
Cdd:PTZ00121 1756 KKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDifdnfANIIEGGKEGNLVINDSKEMEDSAIKEV 1835
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 1434 LSEKEV---HTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKI 1497
Cdd:PTZ00121 1836 ADSKNMqleEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1511-1683 |
6.48e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.77 E-value: 6.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1511 KKIGrryKTQYEELKAQQDKVMEtSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKEteaRNL 1590
Cdd:PRK12704 26 KKIA---EAKIKEAEEEAKRILE-EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKE---ENL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1591 QEQtvqlQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGvkdqLTKenEELKQRngALDQQKDE 1670
Cdd:PRK12704 99 DRK----LELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISG----LTA--EEAKEI--LLEKVEEE 166
|
170
....*....|...
gi 966923050 1671 LDVRITALKSQYE 1683
Cdd:PRK12704 167 ARHEAAVLIKEIE 179
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
974-1127 |
7.35e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 7.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 974 QKEIATLKQHLSNMEVQLASQSSQRTGKgqpsnKEDVDDLVSQLRQTEEQVNDLKERLKTST------SNVEQYRAMvTS 1047
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAA-----KTELEDLEKEIKRLELEIEEVEARIKKYEeqlgnvRNNKEYEAL-QK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1048 LEESLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEAL 1127
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPEL 176
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1472-1737 |
7.86e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.81 E-value: 7.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1472 IQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELK-----------AQQDKVMETSAQSSg 1540
Cdd:pfam10174 242 ISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKqelskkesellALQTKLETLTNQNS- 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1541 dHQEQHVLVqemqeLKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDrttqeeqLRQ 1620
Cdd:pfam10174 321 -DCKQHIEV-----LKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRD-------LKD 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1621 QITEKEektRKAIVAAKsKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALK---SQYEGRISRL----EREL 1693
Cdd:pfam10174 388 MLDVKE---RKINVLQK-KIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEealSEKERIIERLkeqrERED 463
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 966923050 1694 REHQERHLEQRDEPQEPSNKVPEQQRQITLKTTPASGERGIAST 1737
Cdd:pfam10174 464 RERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASS 507
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1528-1859 |
7.97e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 7.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1528 QDKVMETSAQSSGDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQD 1607
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1608 LQ----------------------DRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALD 1665
Cdd:COG3883 95 LYrsggsvsyldvllgsesfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1666 QQKDELDVRITALKSQ---YEGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQITLKTTPASGERGIASTSDPPT 1742
Cdd:COG3883 175 AQQAEQEALLAQLSAEeaaAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGA 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1743 ANIKPTPVVSTPSKVTAAALAGNKSTPRASIRPMVTPATVTNPTTTPTATVMPTTQVESQEAMQSEGPVEHVPVFGSTSG 1822
Cdd:COG3883 255 AGAAAGSAGAAGAAAGAAGAGAAAASAAGGGAGGAGGGGGGGGAASGGSGGGSGGAGGVGSGGGAGAVVGGASAGGGGGS 334
|
330 340 350
....*....|....*....|....*....|....*..
gi 966923050 1823 SVRSTSPNVQPSISQPILTVQQQTQATAFVQPTQQSH 1859
Cdd:COG3883 335 GGGGGSSGGGSGGGGGGGGGGGGSSSGGGGGGVGLSV 371
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
508-696 |
8.15e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 8.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 508 AKAPILKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIRVLLMELEEAR 587
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 588 GNHVIRDEEVSSADISS-------------SSEVISQHLVSYRNIEELQQQNQRLLVALRELgETREREEQETTSSKITE 654
Cdd:COG4942 97 AELEAQKEELAELLRALyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRAD-LAELAALRAELEAERAE 175
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 966923050 655 LQLKLESALTELEQLRKSRQHQMQLVDSIVRQRDMYRILLSQ 696
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAE 217
|
|
| FPP |
pfam05911 |
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant ... |
257-358 |
8.68e-04 |
|
Filament-like plant protein, long coiled-coil; FPP is a family of long coiled-coil plant proteins that are filament-like. It interacts with the nuclear envelope-associated protein, MAF1, the WPP family pfam13943.
Pssm-ID: 461778 [Multi-domain] Cd Length: 859 Bit Score: 44.67 E-value: 8.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 257 KRLEQEKELLHSQNTWLNTELKTKTDELLALG---REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDL 333
Cdd:pfam05911 684 KRLKEEFEQLKSEKENLEVELASCTENLESTKsqlQESEQLIAELRSELASLKESNSLAETQLKCMAESYEDLETRLTEL 763
|
90 100
....*....|....*....|....*
gi 966923050 334 LTKLKEAKEQQASMEEKFHNELNAH 358
Cdd:pfam05911 764 EAELNELRQKFEALEVELEEEKNCH 788
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
456-937 |
8.91e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 8.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 456 PTAAAVAKIVKPGMKLTELYNAYVETQDQL-LLEKLE--NKRINKYLDEI--VKEVEAKAPILKRQREeYERAQKAVASL 530
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIeLLEPIRelAERYAAARERLaeLEYLRAALRLWFAQRR-LELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 531 SVKLEQAMKEIQRLQEDTDKANKQSSVLERdnQRMEI---QIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSE 607
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEA--QIRGNggdRLEQLEREIERLERELEERERRRARLEALLAALGLPLPAS 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 608 VisqhlvsyRNIEELQQQNQRLLVALRELgETREREEQETTSSKITELQLKLESALTELEQLRK------SRQHQMQ--- 678
Cdd:COG4913 379 A--------EEFAALRAEAAALLEALEEE-LEALEEALAEAEAALRDLRRELRELEAEIASLERrksnipARLLALRdal 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 679 ------------------------------------------LVD--------SIVRQRDM------YRILLSQTTGVAI 702
Cdd:COG4913 450 aealgldeaelpfvgelievrpeeerwrgaiervlggfaltlLVPpehyaaalRWVNRLHLrgrlvyERVRTGLPDPERP 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 703 PLHASSLDD-ISLASTPKRPSTSQTVSTPAPVPVIESTE-------AIEAKAALKQLQEIFE-NYKKEKAEN-------- 765
Cdd:COG4913 530 RLDPDSLAGkLDFKPHPFRAWLEAELGRRFDYVCVDSPEelrrhprAITRAGQVKGNGTRHEkDDRRRIRSRyvlgfdnr 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 766 EKIQN--EQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQD---------NVEGYRREITSLHERNQKLTATtqkqeq 834
Cdd:COG4913 610 AKLAAleAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeiDVASAEREIAELEAELERLDAS------ 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 835 iintmTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETK---- 910
Cdd:COG4913 684 -----SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERfaaa 758
|
570 580 590
....*....|....*....|....*....|
gi 966923050 911 ---QRLSSQIEKLEHEISHLKKKLGNEVEQ 937
Cdd:COG4913 759 lgdAVERELRENLEERIDALRARLNRAEEE 788
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
1318-1482 |
8.91e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 44.63 E-value: 8.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1318 LNAEREKVQVTAKTMAQHEELMKKTE-TMNVVMETNKMLREEKERLEQDLqqmqaKVRKLELDILPLQEANaeLSEKSGM 1396
Cdd:pfam05667 337 LEELQEQLEDLESSIQELEKEIKKLEsSIKQVEEELEELKEQNEELEKQY-----KVKKKTLDLLPDAEEN--IAKLQAL 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1397 LQAEKKLLEEDVKRWKARnqhlvsqqKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLK 1476
Cdd:pfam05667 410 VDASAQRLVELAGQWEKH--------RVPLIEEYRALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQKEELYKQLV 481
|
....*.
gi 966923050 1477 EDLNKV 1482
Cdd:pfam05667 482 AEYERL 487
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1352-1708 |
9.88e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.43 E-value: 9.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1352 NKMLREEKERLEQdLQQMQAKVRKLElDILPLQEAnaelseKSGMLQAEKKLLEEDVKRWKArNQHLVSQQKDPDTEEYR 1431
Cdd:pfam10174 208 NIHLREELHRRNQ-LQPDPAKTKALQ-TVIEMKDT------KISSLERNIRDLEDEVQMLKT-NGLLHTEDREEEIKQME 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1432 KLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLT--NNQNL-----IQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKV 1504
Cdd:pfam10174 279 VYKSHSKFMKNKIDQLKQELSKKESELLALQTKLEtlTNQNSdckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1505 KTITQvkkigrryKTQYeelkaQQDKVMETSAQSSgdhqeqhvlvqEMQELKETLNQAETKSKSLESQVENLQKTLSEKE 1584
Cdd:pfam10174 359 SFLNK--------KTKQ-----LQDLTEEKSTLAG-----------EIRDLKDMLDVKERKINVLQKKIENLQEQLRDKD 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1585 TEARNLQEQTVQLQ-------SELSRLRQDLQDR-------TTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQL 1650
Cdd:pfam10174 415 KQLAGLKERVKSLQtdssntdTALTTLEEALSEKeriierlKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEK 494
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966923050 1651 TKENEELKQRNGALDQQKDELDVRITALKSQYEGRI---SRLERELREHQERHLEQRDEPQ 1708
Cdd:pfam10174 495 ESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKeecSKLENQLKKAHNAEEAVRTNPE 555
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1418-1728 |
1.03e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1418 LVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQnliQSLKEDLNKVRTEKETIQKDLDAKI 1497
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ---LKEKLELEEEYLLYLDYLKLNEERI 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1498 IDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQ-EMQELKETLNQAETKSKSLESQVENL 1576
Cdd:pfam02463 240 DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAkEEEELKSELLKLERRKVDDEEKLKES 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1577 QKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENE- 1655
Cdd:pfam02463 320 EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEl 399
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 1656 --ELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQITLKTTPA 1728
Cdd:pfam02463 400 ksEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLL 474
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1262-1637 |
1.14e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1262 LSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELqdSLNAEREKVQvtaktmAQHEELMKK 1341
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL--PLYQELEALE------AELAELPER 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1342 TETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEAN-AELSEKSGMLQAEKKLLEEDVKRWKARNQHLVS 1420
Cdd:COG4717 148 LEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEElQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1421 Q-----QKDPDTEEYRKLLSEK----------------------------------EVHTKRIQQLTEEIGRLKAEIARS 1461
Cdd:COG4717 228 EleqleNELEAAALEERLKEARlllliaaallallglggsllsliltiagvlflvlGLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1462 NASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQyeELKAQQDKVMETSAQSSGD 1541
Cdd:COG4717 308 QALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE--ELEQEIAALLAEAGVEDEE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1542 --------HQEQHVLVQEMQELKETLNQAETKSKSLESQV--ENLQKTLSEKETEARNLQEQTVQLQSELSRLRQ----- 1606
Cdd:COG4717 386 elraaleqAEEYQELKEELEELEEQLEELLGELEELLEALdeEELEEELEELEEELEELEEELEELREELAELEAeleql 465
|
410 420 430
....*....|....*....|....*....|....*
gi 966923050 1607 ----DLQDRTTQEEQLRQQITEKEEKTRKAIVAAK 1637
Cdd:COG4717 466 eedgELAELLQELEELKAELRELAEEWAALKLALE 500
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1522-1703 |
1.18e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1522 EELKAQQDKVMET--SAQSSGDHQEQHvLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQT----- 1594
Cdd:pfam12128 600 EELRERLDKAEEAlqSAREKQAAAEEQ-LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALaerkd 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1595 ------VQLQSELSRLRQDLQD-RTTQEEQLRQQITEKEEKtRKAIVAAKSkiAHLAGVKDQLTKENEELKQRNGALDQQ 1667
Cdd:pfam12128 679 sanerlNSLEAQLKQLDKKHQAwLEEQKEQKREARTEKQAY-WQVVEGALD--AQLALLKAAIAARRSGAKAELKALETW 755
|
170 180 190
....*....|....*....|....*....|....*.
gi 966923050 1668 KDeldvRITALKSQYEGRISRLERELREhQERHLEQ 1703
Cdd:pfam12128 756 YK----RDLASLGVDPDVIAKLKREIRT-LERKIER 786
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1574-1695 |
1.26e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 43.93 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1574 ENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKskIAHLAGVKDQLTKE 1653
Cdd:PRK12705 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDAR--AEKLDNLENQLEER 110
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 966923050 1654 NEELKQRNGALDQQKDELD---VRITALkSQYEGR---ISRLERELRE 1695
Cdd:PRK12705 111 EKALSARELELEELEKQLDnelYRVAGL-TPEQARkllLKLLDAELEE 157
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
367-577 |
1.33e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 367 SAADDSEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKemleKIGKLEKELENVNDLLSATKRKGAIL 446
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR----RIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 447 S------EEELAAMSPTAAAVAKIVKPGMKL----------TELYNAYVETQDQLLLEKLENKRinkyldeivKEVEAKA 510
Cdd:COG4942 96 RaeleaqKEELAELLRALYRLGRQPPLALLLspedfldavrRLQYLKYLAPARREQAEELRADL---------AELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966923050 511 PILKRQREEYERAQKAVASLSVKLEQAMKE----IQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIR 577
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAErqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
163-587 |
1.61e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 163 NQLKALTEKNKELEIAQDRNIAIQSQftrtKEELEAEKRDLIRTNERLSQELEySTEDVKRLNEKLKESNTTKGELQLKL 242
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELE-KLEKLLQLLPLYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 243 DELQASdvsvkyrEKRLEQEKELLHSQnTWLNTELKTKTDELLALGREKGNEILElkcNLENKKEEVSRLEEQMNGLKTS 322
Cdd:COG4717 146 ERLEEL-------EERLEELRELEEEL-EELEAELAELQEELEELLEQLSLATEE---ELQDLAEELEELQQRLAELEEE 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 323 NEHLQKHVEDLLTKLKEAKEQQASMEEKfhnELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEankAIQD 402
Cdd:COG4717 215 LEEAQEELEELEEELEQLENELEAAALE---ERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLG---LLAL 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 403 HLLEVEQSKDQMEKEMlEKIGKLEKELENVNDLLSATKRKGAILSEEELAAMSPTAAAVAKIVkpgmkltELYNAYVETQ 482
Cdd:COG4717 289 LFLLLAREKASLGKEA-EELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQ-------ELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 483 DQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQrEEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANkqssvLERDN 562
Cdd:COG4717 361 EELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELLEALDEEE-----LEEEL 434
|
410 420
....*....|....*....|....*
gi 966923050 563 QRMEIQIKDLSQQIRVLLMELEEAR 587
Cdd:COG4717 435 EELEEELEELEEELEELREELAELE 459
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1360-1716 |
1.84e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.88 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1360 ERLEQDLQQMQAKVRKLELDIlplqeanaelSEKSGMLQAEKKLLEEDVKR--------------WKARNQHLVSQQKDP 1425
Cdd:PTZ00108 1002 GKLERELARLSNKVRFIKHVI----------NGELVITNAKKKDLVKELKKlgyvrfkdiikkksEKITAEEEEGAEEDD 1071
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1426 D------------TEEYRKLLSekevhtKRIQQLTEE-IGRLKAEIARSNASLTN--NQNLIQSLKEDLNKVRTEKETIQ 1490
Cdd:PTZ00108 1072 EaddeddeeelgaAVSYDYLLS------MPIWSLTKEkVEKLNAELEKKEKELEKlkNTTPKDMWLEDLDKFEEALEEQE 1145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1491 KDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQ------------EQHVLVQEMQELKET 1558
Cdd:PTZ00108 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSkrvdsdekrkldDKPDNKKSNSSGSDQ 1225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1559 LNQAETKSKSLESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQdrTTQEEQLRQQITEKEEKTRKAIVAAKS 1638
Cdd:PTZ00108 1226 EDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPK--RVSAVQYSPPPPSKRPDGESNGGSKPS 1303
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966923050 1639 KIAHlAGVKDQLTKENEELKQRNGAldQQKDELDVRITALKSQYEGR-ISRLERELREHQERHLEQRDEPQEPSNKVPE 1716
Cdd:PTZ00108 1304 SPTK-KKVKKRLEGSLAALKKKKKS--EKKTARKKKSKTRVKQASASqSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDE 1379
|
|
| DivIVA |
COG3599 |
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle ... |
1006-1114 |
1.88e-03 |
|
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442818 [Multi-domain] Cd Length: 125 Bit Score: 40.61 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1006 NKEDVDDLVSQLRQTEEQVN----DLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVrknievrlKESAEfqTQLE 1081
Cdd:COG3599 21 DEDEVDEFLDEVAEDYERLIrenkELKEKLEELEEELEEYRELEETLQKTLVVAQETAEEV--------KENAE--KEAE 90
|
90 100 110
....*....|....*....|....*....|...
gi 966923050 1082 KKLMEVEKEKQELQDDKRRAIESMEQQLSELKK 1114
Cdd:COG3599 91 LIIKEAELEAEKIIEEAQEKARKIVREIEELKR 123
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1006-1174 |
2.02e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 2.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1006 NKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRlkesaefqtQLEKKLM 1085
Cdd:COG3206 203 QKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQ---------QLRAQLA 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1086 EVEKEKQELQ---DDKRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYEREL 1162
Cdd:COG3206 274 ELEAELAELSaryTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL 353
|
170
....*....|..
gi 966923050 1163 MLHAADVEALQA 1174
Cdd:COG3206 354 RRLEREVEVARE 365
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
489-1282 |
2.18e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 489 KLENKRINKYLDEIVKEVEAKAPilKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQ 568
Cdd:TIGR00606 278 KKQMEKDNSELELKMEKVFQGTD--EQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 569 IKDLSQQIRVLLMELEEargNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRE---LGETREREEQ 645
Cdd:TIGR00606 356 ADRHQEHIRARDSLIQS---LATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSkerLKQEQADEIR 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 646 ETTSSKITELQLKLESALTELEQLRKSRQHQMQLVDSivrqrdMYRILLSQTTGVAIPLHASSLDDISLASTPKRPSTSQ 725
Cdd:TIGR00606 433 DEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS------SDRILELDQELRKAERELSKAEKNSLTETLKKEVKSL 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 726 TVstpapvpviESTEAIEAKAALKQLQEIFENYKKEKAENEKIQNEQLEKlQEQVTDLRSQNTKISTQLDFASKRYEMLQ 805
Cdd:TIGR00606 507 QN---------EKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDK-DEQIRKIKSRHSDELTSLLGYFPNKKQLE 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 806 DNVEGYRREITSLHERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMlklsEVRLSQQRESLLAEQ 885
Cdd:TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDE----ESDLERLKEEIEKSS 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 886 RGQNLLLTNLQTIQGILERSETETKQ--RLSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNLH 963
Cdd:TIGR00606 653 KQRAMLAGATAVYSQFITQLTDENQSccPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLA 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 964 LNTKELFKNAQKEIATLKQHLSNMEVQLASQSSQRTgkgqpSNKEDVDDLVSQLRQTEEQVNDLK--ERLKTSTSNVEQY 1041
Cdd:TIGR00606 733 PGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIE-----EQETLLGTIMPEEESAKVCLTDVTimERFQMELKDVERK 807
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1042 RAMVTSLEESLNKEKQVTEeVRKNIEvrlkesaEFQTQLEKKLMEVEkEKQELQDDKRRAIESMEQQLSELKktlsSVQN 1121
Cdd:TIGR00606 808 IAQQAAKLQGSDLDRTVQQ-VNQEKQ-------EKQHELDTVVSKIE-LNRKLIQDQQEQIQHLKSKTNELK----SEKL 874
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1122 EVQEALQRASTAlsnEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMasvrqhlEETTQKAESQLL 1201
Cdd:TIGR00606 875 QIGTNLQRRQQF---EEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK-------ETSNKKAQDKVN 944
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1202 ECKASWEERERMLKDEVSKCVCRCEDLEKQnkllhdqieklsdkvvasvKEGVQGPLNVSLSEEGKSQEQILEILRFIRR 1281
Cdd:TIGR00606 945 DIKEKVKNIHGYMKDIENKIQDGKDDYLKQ-------------------KETELNTVNAQLEECEKHQEKINEDMRLMRQ 1005
|
.
gi 966923050 1282 E 1282
Cdd:TIGR00606 1006 D 1006
|
|
| PLN02523 |
PLN02523 |
galacturonosyltransferase |
317-447 |
2.45e-03 |
|
galacturonosyltransferase
Pssm-ID: 215286 [Multi-domain] Cd Length: 559 Bit Score: 42.94 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 317 NGLKTSNEHLQKHVEDLLT----------KLKEAKEQQASMEEKFHnelnahIKLSNLYKSAADDSEAKSNELTRAVDEL 386
Cdd:PLN02523 74 DPLKTRLDQIRKQADDHRTlvnayaayarKLKLDNSKLLRLFADLS------RNFTDLISKPSYRALLSSDGSAIDEDVL 147
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923050 387 HKLLKEAGEANKAIQDHLLEVEQSKD-QMekemleKIGKLEKELENVNDLLSATKRKGAILS 447
Cdd:PLN02523 148 RQFEKEVKERVKVARQMIAESKESFDnQL------KIQKLKDTIFAVNEQLTKAKKNGAFAS 203
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
748-1113 |
2.45e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 43.14 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 748 LKQLQEIFENYKKeKAENEKIQNEQLEKLQEQVTDLRSQNTkistQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTA 827
Cdd:pfam05622 130 VKKLEATVETYKK-KLEDLGDLRRQVKLLEERNAEYMQRTL----QLEEELKKANALRGQLETYKRQVQELHGKLSEESK 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 828 TTQKQEQIINTMtqdlrganeklavaEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSET 907
Cdd:pfam05622 205 KADKLEFEYKKL--------------EEKLEALQKEKERLIIERDTLRETNEELRCAQLQQAELSQADALLSPSSDPGDN 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 908 ETKQRLSSQ----IEKLEHEISHLKKKLGNEVEQRHTLTRNLDVQLLDTKRQLDTETNLhlntkelfknAQKEIATLKQH 983
Cdd:pfam05622 271 LAAEIMPAEirekLIRLQHENKMLRLGQEGSYRERLTELQQLLEDANRRKNELETQNRL----------ANQRILELQQQ 340
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 984 LSNMEVQLASQSSQRTGKGQpsNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAM-VTSLEESLNKEkqvtEEV 1062
Cdd:pfam05622 341 VEELQKALQEQGSKAEDSSL--LKQKLEEHLEKLHEAQSELQKKKEQIEELEPKQDSNLAQkIDELQEALRKK----DED 414
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1063 RKNIEVRLKESAEFQTQLEKKL---------MEVEKEKQELQdDKRRAIESMEQQLSELK 1113
Cdd:pfam05622 415 MKAMEERYKKYVEKAKSVIKTLdpkqnpaspPEIQALKNQLL-EKDKKIEHLERDFEKSK 473
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1421-1692 |
2.50e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.59 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1421 QQKDPDTEEYRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQK--------- 1491
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEkvkelkeer 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1492 -DLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKETLNQAetksksle 1570
Cdd:COG1340 81 dELNEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKELVEKIKELEKELEKA-------- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1571 sqvenlqKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQITE---KEEKTRKAIVAAKSKIAHLAGVK 1647
Cdd:COG1340 153 -------KKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIElykEADELRKEADELHKEIVEAQEKA 225
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 966923050 1648 DQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLERE 1692
Cdd:COG1340 226 DELHEEIIELQKELRELRKELKKLRKKQRALKREKEKEELEEKAE 270
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1038-1186 |
3.23e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.89 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1038 VEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKEsaefqtqLEKKLMEVEKEKQELQDDKrraiesmEQQLSELKKTLS 1117
Cdd:PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEE-------AEALLKEAEKLKEELEEKK-------EKLQEEEDKLLE 569
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966923050 1118 SVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVR 1186
Cdd:PRK00409 570 EAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| PLN03188 |
PLN03188 |
kinesin-12 family protein; Provisional |
101-440 |
3.27e-03 |
|
kinesin-12 family protein; Provisional
Pssm-ID: 215621 [Multi-domain] Cd Length: 1320 Bit Score: 43.00 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 101 LEKFLADQQSEIDGLKGRHEKFKVESEQQyfeiekrlshsqeRLVNETRECQSLRLEL---------EKLSNQLKALTEK 171
Cdd:PLN03188 882 LEEFCTKQASEITQLNRLVQQYKHERECN-------------AIIGQTREDKIIRLESlmdgvlskeDFLEEELASLMHE 948
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 172 NKEL-EIAQDRNIAIQS--QFTRTKEELE--------AEKRDLIRTNERLSQELEY----STEDVKRLNEKLKESNTTKG 236
Cdd:PLN03188 949 HKLLkEKYENHPEVLRTkiELKRVQDELEhyrnfydmGEREVLLEEIQDLRSQLQYyidsSLPSARKRNSLLKLTYSCEP 1028
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 237 ELQLKLDELQASdvSVKYREKRLEQEK-ELLHSQNTW--LNTELKTKTDELLALGREKGNEI-LELKCNLENKK------ 306
Cdd:PLN03188 1029 SQAPPLNTIPES--TDESPEKKLEQERlRWTEAESKWisLAEELRTELDASRALAEKQKHELdTEKRCAEELKEamqmam 1106
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 307 -------EEVSRLEEQMNGLKTSNEHLQKHVEDLltKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAA-----DDSEA 374
Cdd:PLN03188 1107 egharmlEQYADLEEKHIQLLARHRRIQEGIDDV--KKAAARAGVRGAESKFINALAAEISALKVEREKErrylrDENKS 1184
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923050 375 KSNEL------TRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEMLEKIGKLEKELENVNDLLSATK 440
Cdd:PLN03188 1185 LQAQLrdtaeaVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAESR 1256
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
81-669 |
3.34e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 81 LQQVLERTELNKLPKSVQnKLEKFLADQQSEIDGLKGRHEKFKV---ESEQQYFEIEKRLSHSQERLVNETRECQ-SLRL 156
Cdd:TIGR02169 216 LLKEKREYEGYELLKEKE-ALERQKEAIERQLASLEEELEKLTEeisELEKRLEEIEQLLEELNKKIKDLGEEEQlRVKE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 157 ELEKLSNQL----KALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQ------ELEYSTED-VKRLN 225
Cdd:TIGR02169 295 KIGELEAEIasleRSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKlteeyaELKEELEDlRAELE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 226 EKLKESNTTKGEL---QLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLALG---REKGNEILELK 299
Cdd:TIGR02169 375 EVDKEFAETRDELkdyREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEeekEDKALEIKKQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 300 CNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAK-EQQASMEEKFHN-----ELNAHIK-----LSNLYK-- 366
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEaQARASEERVRGGraveeVLKASIQgvhgtVAQLGSvg 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 367 --------SAA----------DDSEAKS------------------NELtRAVDELHKLLKEAGEANKAI---------- 400
Cdd:TIGR02169 535 eryataieVAAgnrlnnvvveDDAVAKEaiellkrrkagratflplNKM-RDERRDLSILSEDGVIGFAVdlvefdpkye 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 401 -------QDHLL--EVEQSKDQM--------EKEMLEKIG-----------------KLEKELENVNDLLSATKRKGAIL 446
Cdd:TIGR02169 614 pafkyvfGDTLVveDIEAARRLMgkyrmvtlEGELFEKSGamtggsraprggilfsrSEPAELQRLRERLEGLKRELSSL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 447 SEEE----------LAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQL------LLEKLEN---------KRINKYLDE 501
Cdd:TIGR02169 694 QSELrrienrldelSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELeedlssLEQEIENvkselkeleARIEELEED 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 502 IVKEVEAKAPI--------LKRQREEYERAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLS 573
Cdd:TIGR02169 774 LHKLEEALNDLearlshsrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 574 QQIRVLLMELEEArgnhvirdEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELgetreREEQETTSSKIT 653
Cdd:TIGR02169 854 KEIENLNGKKEEL--------EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL-----EAQIEKKRKRLS 920
|
730
....*....|....*.
gi 966923050 654 ELQLKLESALTELEQL 669
Cdd:TIGR02169 921 ELKAKLEALEEELSEI 936
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1444-1699 |
3.41e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1444 IQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKE---DLNKVRTEKETIQKD-LDAKIIDIQEKVKTITQVKKIGRRYKT 1519
Cdd:PRK04863 839 LRQLNRRRVELERALADHESQEQQQRSQLEQAKEglsALNRLLPRLNLLADEtLADRVEEIREQLDEAEEAKRFVQQHGN 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1520 QYEELKAQQDKVMEtsaqssgDHQEQHVLVQEMQELKETLNQAETKSKSLESQVENLQKTlseKETEARNLQEQTVQLQS 1599
Cdd:PRK04863 919 ALAQLEPIVSVLQS-------DPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHF---SYEDAAEMLAKNSDLNE 988
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1600 ELS-RLRQDLQDRTTQEEQLRQQITEKEEKTrKAIVAAKSKIAHLAGVKDQLTKENEELKQRN--GALDQ---QKDELDV 1673
Cdd:PRK04863 989 KLRqRLEQAEQERTRAREQLRQAQAQLAQYN-QVLASLKSSYDAKRQMLQELKQELQDLGVPAdsGAEERaraRRDELHA 1067
|
250 260
....*....|....*....|....*....
gi 966923050 1674 RITA---LKSQYEGRISRLERELREHQER 1699
Cdd:PRK04863 1068 RLSAnrsRRNQLEKQLTFCEAEMDNLTKK 1096
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
748-1120 |
3.46e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.97 E-value: 3.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 748 LKQLQEIFENYKKEK-------AENEKIQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHE 820
Cdd:PRK01156 372 IESLKKKIEEYSKNIermsafiSEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNG 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 821 RNQ----KLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQResllaeqrgqnllltnlq 896
Cdd:PRK01156 452 QSVcpvcGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEE------------------ 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 897 tiqgiLERSETETKQ--RLSSQIEKLEHEISHLKKKlGNEVEQRHTLTRNLDVQLLDTKRQ-----------LDTETNlh 963
Cdd:PRK01156 514 -----INKSINEYNKieSARADLEDIKIKINELKDK-HDKYEEIKNRYKSLKLEDLDSKRTswlnalavislIDIETN-- 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 964 lntKELFKNAQKEIATLKQHLSNMEVQLASQSSQrtgkgQPSNKEDVDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRA 1043
Cdd:PRK01156 586 ---RSRSNEIKKQLNDLESRLQEIEIGFPDDKSY-----IDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKK 657
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966923050 1044 MVTSLEESLNKEKQVTEEVrKNIEVRLKESaefQTQLEKKLMEvEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQ 1120
Cdd:PRK01156 658 QIAEIDSIIPDLKEITSRI-NDIEDNLKKS---RKALDDAKAN-RARLESTIEILRTRINELSDRINDINETLESMK 729
|
|
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
1281-1704 |
3.88e-03 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 42.32 E-value: 3.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1281 REKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNAERekvqvtaktmAQHEELMKKteTMNVVMetnkMLREEKE 1360
Cdd:pfam05701 159 SERDIAIKRAEEAVSASKEIEKTVEELTIELIATKESLESAH----------AAHLEAEEH--RIGAAL----AREQDKL 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1361 RLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQ---------AEKKLLEEDVKRWKARNQHLVSQQK-DPDTEEY 1430
Cdd:pfam05701 223 NWEKELKQAEEELQRLNQQLLSAKDLKSKLETASALLLdlkaelaayMESKLKEEADGEGNEKKTSTSIQAAlASAKKEL 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1431 RKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNL-------IQSLKEDLNKVRTEKETIQkdldAKIIDIQEK 1503
Cdd:pfam05701 303 EEVKANIEKAKDEVNCLRVAAASLRSELEKEKAELASLRQRegmasiaVSSLEAELNRTKSEIALVQ----AKEKEAREK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1504 VKTITQvkkigrryKTQYEELKAQQDKVMETSAQssgdhqeqhvlvQEMQELKETLNQAETKSKSLESQVENLQK-TLSE 1582
Cdd:pfam05701 379 MVELPK--------QLQQAAQEAEEAKSLAQAAR------------EELRKAKEEAEQAKAAASTVESRLEAVLKeIEAA 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1583 KETEARNLQEQTVQLQSELSRLRQDLQDR------TTQE-EQLRQQITEKEEKTRKAIVAAKSKIAHlagVKDQLTKENE 1655
Cdd:pfam05701 439 KASEKLALAAIKALQESESSAESTNQEDSprgvtlSLEEyYELSKRAHEAEELANKRVAEAVSQIEE---AKESELRSLE 515
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 966923050 1656 ELKQRNGALDQQKDELDVRITALKSQYEGRISrLERELREHQERHlEQR 1704
Cdd:pfam05701 516 KLEEVNREMEERKEALKIALEKAEKAKEGKLA-AEQELRKWRAEH-EQR 562
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
841-1163 |
4.31e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 41.83 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 841 QDLRGANEKLAVAEVRAENLKKEKEMLklsEVRLSQQRESLLAEQRG-QNLLLTNLQTIQGILERSETEtKQRLSSQIEK 919
Cdd:pfam00038 4 EQLQELNDRLASYIDKVRFLEQQNKLL---ETKISELRQKKGAEPSRlYSLYEKEIEDLRRQLDTLTVE-RARLQLELDN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 920 LEHEISHLKKKLGNEVEQRhtltRNLDVQLLDTKRQLDTETnlhLNTKELfknaQKEIATLKqhlsnmevqlasqssqrt 999
Cdd:pfam00038 80 LRLAAEDFRQKYEDELNLR----TSAENDLVGLRKDLDEAT---LARVDL----EAKIESLK------------------ 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1000 gkgqpsnkedvDDLVSQLRQTEEQVNDLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEvrknIEVRLKESAE--FQ 1077
Cdd:pfam00038 131 -----------EELAFLKKNHEEEVRELQAQVSDTQVNVEMDAARKLDLTSALAEIRAQYEE----IAAKNREEAEewYQ 195
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1078 TQLEKKLMEVEKEKQELQDDK------RRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQARRDCQEQ---A 1148
Cdd:pfam00038 196 SKLEELQQAAARNGDALRSAKeeitelRRTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQELISELEAElqeT 275
|
330
....*....|....*
gi 966923050 1149 KIAVEAQNKYERELM 1163
Cdd:pfam00038 276 RQEMARQLREYQELL 290
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
870-1449 |
4.37e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.42 E-value: 4.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 870 SEVRLSQQRESL----LAEQRGQNLLLTNLQTIQGILERsETETKQRLSSQIEKLEHEISHLKKKLGNEVEQRHTLTRNL 945
Cdd:pfam05557 7 SKARLSQLQNEKkqmeLEHKRARIELEKKASALKRQLDR-ESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 946 DVQLLDTKRQLDTETNLHlntkELFKNAQKEIATLKQHLSNMEVQLASQSSQrtgkgqpsnKEDVDDLVSQLRQTEEQVN 1025
Cdd:pfam05557 86 EALNKKLNEKESQLADAR----EVISCLKNELSELRRQIQRAELELQSTNSE---------LEELQERLDLLKAKASEAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1026 DLKERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEEVrKNIEVRLKESAEFQTQLEKkLMEVEKEKQELQDDKrraiESM 1105
Cdd:pfam05557 153 QLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIV-KNSKSELARIPELEKELER-LREHNKHLNENIENK----LLL 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1106 EQQLSELKKTLSSvQNEVQEALqrASTALSNEQQARRdcqeqakiaveaQNKYERELMLHAADVEALQAAKEQVSKMASV 1185
Cdd:pfam05557 227 KEEVEDLKRKLER-EEKYREEA--ATLELEKEKLEQE------------LQSWVKLAQDTGLNLRSPEDLSRRIEQLQQR 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1186 RQHLEETTQKAESQLLECKASweerERMLKDEVSKCVCRCEDLEKQNKLLHDQIEKLSDKVVASVKE---------GVQG 1256
Cdd:pfam05557 292 EIVLKEENSSLTSSARQLEKA----RRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKErdgyraileSYDK 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1257 PLNVSLSEEGKSQ--EQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERelqelqdSLNAEREKVQVTAKTMAQ 1334
Cdd:pfam05557 368 ELTMSNYSPQLLEriEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLER-------ELQALRQQESLADPSYSK 440
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1335 HE--ELMKKTETMNVvmeTNKMLREEKERLE-----QDLQQM--QAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLE 1405
Cdd:pfam05557 441 EEvdSLRRKLETLEL---ERQRLREQKNELEmelerRCLQGDydPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAEIERLK 517
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 966923050 1406 EDVKRWKARN---QHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTE 1449
Cdd:pfam05557 518 RLLKKLEDDLeqvLRLPETTSTMNFKEVLDLRKELESAELKNQRLKE 564
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1275-1589 |
4.49e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 4.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1275 ILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSlNAEREKVQVTAKTMAQhEELMKKTETMNVVMETNKM 1354
Cdd:COG5022 848 IQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKID-VKSISSLKLVNLELES-EIIELKKSLSSDLIENLEF 925
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1355 LREEKERLEQDLQQMQAKVRKL----ELDIL-PLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPdtEE 1429
Cdd:COG5022 926 KTELIARLKKLLNNIDLEEGPSieyvKLPELnKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL--AE 1003
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1430 YRKLLSEKEVHTKRIQQLTEEIGRLKAEIARSNASLTNNQNLiQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQ 1509
Cdd:COG5022 1004 LSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSIL-KPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQ 1082
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1510 VKKIGRrykTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEM------QELKETLNQAETKSKSLESQVENLQKTLSEK 1583
Cdd:COG5022 1083 LYQLES---TENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMiklnllQEISKFLSQLVNTLEPVFQKLSVLQLELDGL 1159
|
....*.
gi 966923050 1584 ETEARN 1589
Cdd:COG5022 1160 FWEANL 1165
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
170-513 |
4.53e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.22 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 170 EKNKELEIAQDRNIAiqsQFTRTKEELEAEK-RDLIRTNERLSQELEYstedVKRLNEKLKesntTKGELQLKLDELQAS 248
Cdd:PRK05771 17 YKDEVLEALHELGVV---HIEDLKEELSNERlRKLRSLLTKLSEALDK----LRSYLPKLN----PLREEKKKVSVKSLE 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 249 DVsVKYREKRLEQ-EKELlhsqntwlntelktktdellalgREKGNEILELKCNLENKKEEVSRLEEQMN-GLKTSNEHL 326
Cdd:PRK05771 86 EL-IKDVEEELEKiEKEI-----------------------KELEEEISELENEIKELEQEIERLEPWGNfDLDLSLLLG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 327 QKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKsneltravDELHKLLKEAG------------ 394
Cdd:PRK05771 142 FKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELS--------DEVEEELKKLGferleleeegtp 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 395 -EANKAIQDHLLEVEQSKDQMEKEMLEKIGKLEKELENVNDLLSATKRKGAILSEeelAAMSPTAAAVakivkpgmklte 473
Cdd:PRK05771 214 sELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSK---FLKTDKTFAI------------ 278
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 966923050 474 lyNAYV--ETQDQL--LLEKLENKRInkYLDEI-VKEVEAKAPIL 513
Cdd:PRK05771 279 --EGWVpeDRVKKLkeLIDKATGGSA--YVEFVePDEEEEEVPTK 319
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
109-485 |
4.54e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.50 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 109 QSEIDGLKGRHEkfkveseqqyfEIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKALTEK----NKELEIAQDRNIA 184
Cdd:pfam10174 344 QTEVDALRLRLE-----------EKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKinvlQKKIENLQEQLRD 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 185 IQSQFTRTKEELEAEKRDLIRTNERLSQeLEYSTEDVKRLNEKLKESNTTkgELQLKLDELQASDVSVKYREKRLEQEKE 264
Cdd:pfam10174 413 KDKQLAGLKERVKSLQTDSSNTDTALTT-LEEALSEKERIIERLKEQRER--EDRERLEELESLKKENKDLKEKVSALQP 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 265 LLHSQNTWLNtELKTKTDELLALGREKGNEILELKCNLENKKEEVSRLEEQMNglktsnehlqkhvedlltklkeaKEQQ 344
Cdd:pfam10174 490 ELTEKESSLI-DLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLK-----------------------KAHN 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 345 ASMEEKFHNELNAHIK-LSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKAIQDhlleveqskdqMEKEMLEKIG 423
Cdd:pfam10174 546 AEEAVRTNPEINDRIRlLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAE-----------LESLTLRQMK 614
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923050 424 KLEKELENVNDLLSATKRKGAILSEEELAAMSPTAAAVAKIvkpgmKLTELYNAYVETQDQL 485
Cdd:pfam10174 615 EQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQL-----QLEELMGALEKTRQEL 671
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
83-246 |
4.64e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 4.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 83 QVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHEKFKVESE-----QQYFEIEKRLSHSQERLVNetrecqslrle 157
Cdd:PHA02562 242 ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcptctQQISEGPDRITKIKDKLKE----------- 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 158 lekLSNQLKALTEKNKELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTN----------ERLSQELEYSTEDVKRLNEK 227
Cdd:PHA02562 311 ---LQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVdkakkvkaaiEELQAEFVDNAEELAKLQDE 387
|
170
....*....|....*....
gi 966923050 228 LKESNTTKGELQLKLDELQ 246
Cdd:PHA02562 388 LDKIVKTKSELVKEKYHRG 406
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1443-1728 |
4.82e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.81 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1443 RIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYE 1522
Cdd:COG4372 39 ELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1523 ELKAQQDKVMETSAQssgdhqeqhvLVQEMQELKETLNQAETKSKSLESQVENLQKTLSEKETEARNLQEQtvQLQSELS 1602
Cdd:COG4372 119 ELQKERQDLEQQRKQ----------LEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEA--EAEQALD 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1603 RLRQDLQDRTTQEEQLRQQITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQY 1682
Cdd:COG4372 187 ELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELA 266
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 966923050 1683 EGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQITLKTTPA 1728
Cdd:COG4372 267 ILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGA 312
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
916-1129 |
4.98e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 41.72 E-value: 4.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 916 QIEKLEHEISHLKKKLGNEVEQRHTLTRN---LDVQLLDTKRQLD----------TETNLHLNTKELFKNAQKEIATLKQ 982
Cdd:pfam15905 95 RLQALEEELEKVEAKLNAAVREKTSLSASvasLEKQLLELTRVNEllkakfsedgTQKKMSSLSMELMKLRNKLEAKMKE 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 983 HLS---NMEVQLAS------QSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVNDLKErLKTSTSNVEQYRAMVTSLEESLN 1053
Cdd:pfam15905 175 VMAkqeGMEGKLQVtqknleHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITE-LSCVSEQVEKYKLDIAQLEELLK 253
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923050 1054 KEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRRAIESMEQQLSELKKTLSSVQNEVQEALQR 1129
Cdd:pfam15905 254 EKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLTLEEQEHQKLQQK 329
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1567-1775 |
5.04e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 5.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1567 KSLESQVENLQKTLSEK----ETEARNLQEQTVQlqSELSRLRQDLQDRTTQEEQLRQQITEKEEKTRKAivaaksKIAH 1642
Cdd:COG2433 346 DAYKNKFERVEKKVPPDvdrdEVKARVIRGLSIE--EALEELIEKELPEEEPEAEREKEHEERELTEEEE------EIRR 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1643 LAGVKDQLTKENEELKQRNGALDQQKDELDVRITALKSQY-------------EGRISRLERELREHQER--HLEQRDEP 1707
Cdd:COG2433 418 LEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEErreirkdreisrlDREIERLERELEEERERieELKRKLER 497
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966923050 1708 QEPSNKVPEQQRQITLKTTPASGERGIASTSDPPTanIKPTPVV-----STPSKVTAAALAGNKstPRASIRP 1775
Cdd:COG2433 498 LKELWKLEHSGELVPVKVVEKFTKEAIRRLEEEYG--LKEGDVVylrdaSGAGRSTAELLAEAG--PRAVIVP 566
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
1465-1600 |
5.41e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 41.54 E-value: 5.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1465 LTNNQNLIQSLKEDLNKVRTEKETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTqyEELKAQQDKVMETSAQSSGDHQE 1544
Cdd:smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDP--TELDRAKEKLKKLLQEIMIKVKK 226
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1545 QHVLVQEMQELKETLNQAETKSKSLESQVENLQKTLSE----KETEARNLQEQTVQLQSE 1600
Cdd:smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQcrgfTFKEIEKLKEQLKLLQSL 286
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
125-315 |
5.46e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 125 ESEQQYFEIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKALTEK----NKELEIAQDRNIAIQSQFTRTKEELEAEK 200
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRiralEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 201 RDL---IRTNERLSQ--------------ELEYSTEDVKRLNEKLKESNTtkgELQLKLDELQASDVSVKYREKRLEQEK 263
Cdd:COG4942 104 EELaelLRALYRLGRqpplalllspedflDAVRRLQYLKYLAPARREQAE---ELRADLAELAALRAELEAERAELEALL 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 264 ELLHSQNTWLNTELKTKTDELLALGREKG---NEILELKCNLENKKEEVSRLEEQ 315
Cdd:COG4942 181 AELEEERAALEALKAERQKLLARLEKELAelaAELAELQQEAEELEALIARLEAE 235
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1421-1679 |
5.73e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 5.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1421 QQKDPDTEEyrKLLSEKEVHT----KRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRTEK------ETIQ 1490
Cdd:PRK11281 50 KQKLLEAED--KLVQQDLEQTlallDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETlstlslRQLE 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1491 KDLDAKIIDIQEKVKTITQVKKIGRRYKTQYE----ELKAQQDKVMETSAQSSGDHQEQHVLVQEMQelketlNQAETKS 1566
Cdd:PRK11281 128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPEraqaALYANSQRLQQIRNLLKGGKVGGKALRPSQR------VLLQAEQ 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1567 KSLESQVENLQK------TLSEKETEARNL-QEQTVQLQSELsrlrQDLQD-----RTTQEEQLRQQITEKEEKTRK--- 1631
Cdd:PRK11281 202 ALLNAQNDLQRKslegntQLQDLLQKQRDYlTARIQRLEHQL----QLLQEainskRLTLSEKTVQEAQSQDEAARIqan 277
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923050 1632 AIVAAKSKIAHlagvkdQL-------TKENEELKQRNGALDQQKDEL-------DVRITALK 1679
Cdd:PRK11281 278 PLVAQELEINL------QLsqrllkaTEKLNTLTQQNLRVKNWLDRLtqserniKEQISVLK 333
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
774-1148 |
6.35e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 6.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 774 EKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKL--------------TATTQKQEQIINTM 839
Cdd:PRK02224 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELreeaaeleseleeaREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 840 TQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTI----------QGILERSETET 909
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALleagkcpecgQPVEGSPHVET 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 910 KQRLSSQIEKLEHEISHLKKKLgNEVEQRHTLTRNL-----DVQLLDTKRQLDTETnlhLNTKELFKNAQKE-IATLKQH 983
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEV-EEVEERLERAEDLveaedRIERLEERREDLEEL---IAERRETIEEKRErAEELRER 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 984 LSNMEVQLASQSSQRTGKGQPSNK--EDVDDLVSQLRQTEEQVNDLkERLKTSTSNVEQYRAMVTSLEESLNKEKQVTEE 1061
Cdd:PRK02224 546 AAELEAEAEEKREAAAEAEEEAEEarEEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAELNDE 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1062 VRKnievRLKESAEFQTQLEKKLMEVEKEkqELQDDKRRAIESMEQ----------QLSELKKTLSSVQNEVQ--EALQR 1129
Cdd:PRK02224 625 RRE----RLAEKRERKRELEAEFDEARIE--EAREDKERAEEYLEQveekldelreERDDLQAEIGAVENELEelEELRE 698
|
410
....*....|....*....
gi 966923050 1130 ASTALSNEQQARRDCQEQA 1148
Cdd:PRK02224 699 RREALENRVEALEALYDEA 717
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1471-1681 |
6.41e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1471 LIQSLKEDLNKVRTEKETIQKDLDAKIIDiQEKVKTITQVKKIGRryktqyeELKAQQDKVMETSaqssgDHQEQhvLVQ 1550
Cdd:PRK10929 80 LSAELRQQLNNERDEPRSVPPNMSTDALE-QEILQVSSQLLEKSR-------QAQQEQDRAREIS-----DSLSQ--LPQ 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1551 EMQELKETLNQAETKSKSL---ESQVENLQKTLSEKETEARNLQEQTVQL-------QSELSRLRQDLQDRTTQE----- 1615
Cdd:PRK10929 145 QQTEARRQLNEIERRLQTLgtpNTPLAQAQLTALQAESAALKALVDELELaqlsannRQELARLRSELAKKRSQQldayl 224
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966923050 1616 EQLRQQITEKEEKTRKAIVAAKSKIAHLAG-----VKDQLtKENEELKQrngALDQQKDELDVrITALKSQ 1681
Cdd:PRK10929 225 QALRNQLNSQRQREAERALESTELLAEQSGdlpksIVAQF-KINRELSQ---ALNQQAQRMDL-IASQQRQ 290
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1414-1720 |
6.77e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1414 RNQHLVSQQKDPDTEEYRKllsEKEVHTKRIQQLTEEIGRLKAEIARSNASLTN---NQNLIQSLKEDLNKVRTEKETIQ 1490
Cdd:pfam07888 48 QAQEAANRQREKEKERYKR---DREQWERQRRELESRVAELKEELRQSREKHEEleeKYKELSASSEELSEEKDALLAQR 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1491 KDLDAKIIDIQEKVKTITQvkkigrryktQYEELKAQQDKVMETSAQSSGDHQEQHvlvQEMQELKETLNQAETKSKSLE 1570
Cdd:pfam07888 125 AAHEARIRELEEDIKTLTQ----------RVLERETELERMKERAKKAGAQRKEEE---AERKQLQAKLQQTEEELRSLS 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1571 SQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQdlqdRTTQEEQLRQQIT---EKEEKTRKAIVAAKSKIAHLAGVK 1647
Cdd:pfam07888 192 KEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHR----KEAENEALLEELRslqERLNASERKVEGLGEELSSMAAQR 267
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966923050 1648 DQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQERHLEQRDEPQEPSNKVPEQQRQ 1720
Cdd:pfam07888 268 DRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEERME 340
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
134-449 |
6.89e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 41.70 E-value: 6.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 134 EKRLSHSQERLvnetRECQSLRLELEKLSNQLKAlteknkELEIAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERLSQE 213
Cdd:pfam01576 186 EAMISDLEERL----KKEEKGRQELEKAKRKLEG------ESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEE 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 214 LEYSTEDVKRLNEklkesnttkgeLQLKLDELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKTDELLA---LGRE 290
Cdd:pfam01576 256 TAQKNNALKKIRE-----------LEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAqqeLRSK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 291 KGNEILELKCNLEnkkEEVSRLEEQMNGLKtsnehlQKH---VEDLLTKLKEAKEQQASME------EKFHNELNAHIKL 361
Cdd:pfam01576 325 REQEVTELKKALE---EETRSHEAQLQEMR------QKHtqaLEELTEQLEQAKRNKANLEkakqalESENAELQAELRT 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 362 SNLYKSaadDSEAKSNELTRAVDELHKLLKEAgeankaiqdhlleveqskDQMEKEMLEKIGKLEKELENVNDLLSATKR 441
Cdd:pfam01576 396 LQQAKQ---DSEHKRKKLEGQLQELQARLSES------------------ERQRAELAEKLSKLQSELESVSSLLNEAEG 454
|
....*...
gi 966923050 442 KGAILSEE 449
Cdd:pfam01576 455 KNIKLSKD 462
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1015-1258 |
7.08e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 7.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1015 SQLRQTEEQVNDLKERLKTSTSNVEQyramvtsleesLNKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKEKQEL 1094
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAA-----------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1095 QDDKRRAIESMEQQLSELKKTLSSVQ-NEVQEALQRASTALSNEQQARRdcQEQAKIAVEAQNKYERELmlhAADVEALQ 1173
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYrLGRQPPLALLLSPEDFLDAVRR--LQYLKYLAPARREQAEEL---RADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1174 AAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNKLLHDQIEKLSDKVVASVKEG 1253
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
....*
gi 966923050 1254 VQGPL 1258
Cdd:COG4942 244 PAAGF 248
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
1016-1149 |
7.54e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 40.99 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1016 QLRQTEEQVNDLKERLKTSTSNVEQYRamvtsleeslNKEKQVTEEvrKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQ 1095
Cdd:COG3524 178 AVRFAEEEVERAEERLRDAREALLAFR----------NRNGILDPE--ATAEALLQLIATLEGQLAELEAELAALRSYLS 245
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923050 1096 DDK------RRAIESMEQQLSELKKTLSSV----------------QNEVQEALQRASTALSNEQQARRDCQEQAK 1149
Cdd:COG3524 246 PNSpqvrqlRRRIAALEKQIAAERARLTGAsggdslasllaeyerlELEREFAEKAYTSALAALEQARIEAARQQR 321
|
|
| Seryl_tRNA_N |
pfam02403 |
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA ... |
1478-1580 |
7.56e-03 |
|
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase.
Pssm-ID: 426757 [Multi-domain] Cd Length: 108 Bit Score: 38.34 E-value: 7.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1478 DLNKVRTEKETIQKDLDAKIIDIqEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQEMQELKE 1557
Cdd:pfam02403 3 DIKLIRENPEAVKESLKKRGVDV-LDVDELLELDEKRRELQVELEELQAERNELSKEIGQAKKKKEDADALIAEVKELKD 81
|
90 100
....*....|....*....|...
gi 966923050 1558 TLNQAETKSKSLESQVENLQKTL 1580
Cdd:pfam02403 82 ELKALEAELKELEAELDKLLLTI 104
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
744-1244 |
8.14e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 8.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 744 AKAALKQLQEIFENYKKEKAENEKIQNEQLEKLQEQVTDLRSQNTKISTQLD---------------FASKRYEMLQDNV 808
Cdd:pfam12128 313 ADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKaltgkhqdvtakynrRRSKIKEQNNRDI 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 809 EGYRREITSLHERNQKLTATT----QKQEQIINT-MTQDLRGANEKLAVAEVRAENLK----------KEKEMLKLSEVR 873
Cdd:pfam12128 393 AGIKDKLAKIREARDRQLAVAeddlQALESELREqLEAGKLEFNEEEYRLKSRLGELKlrlnqatatpELLLQLENFDER 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 874 LSQQRESLLAEQRGQNLLLTNLQTIQGILERSeTETKQRLSSQIEKLEHEISHLKKKLgneVEQRHTLTRNLDVQLLDTK 953
Cdd:pfam12128 473 IERAREEQEAANAEVERLQSELRQARKRRDQA-SEALRQASRRLEERQSALDELELQL---FPQAGTLLHFLRKEAPDWE 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 954 ----RQLDTE----TNLHLNTKELFKNAQKEIATLKQHLSNMEVQLASQSSQRTGKGQPSNKEDVDDLVSQLRQTEEQVN 1025
Cdd:pfam12128 549 qsigKVISPEllhrTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLV 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1026 DLKERLKTSTSNVEQYRAMVTSLEESL----NKEKQVTEEVRKNIEVRLKESAEFQTQLEKKLMEVEKE----KQELQDD 1097
Cdd:pfam12128 629 QANGELEKASREETFARTALKNARLDLrrlfDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKhqawLEEQKEQ 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1098 KRRAIESMEQQLSELKKTLSSVQNEVQEALQRASTALSNEQQArrdCQEQAKIAVEAQNKYERELMLHAADVEALQAAKE 1177
Cdd:pfam12128 709 KREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKA---LETWYKRDLASLGVDPDVIAKLKREIRTLERKIE 785
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966923050 1178 QV----SKMASVRQHLEET----TQKAESQLLECKASWEERERMLKDEVSKCVCRCEDLEKQNKLLHDQIEKLSD 1244
Cdd:pfam12128 786 RIavrrQEVLRYFDWYQETwlqrRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSE 860
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
339-564 |
8.56e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 8.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 339 EAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSKDQMEKEm 418
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 419 LEKIGKLEKELENVNDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTElynAYVETQDQLLLEKLENKRINKY 498
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE---ELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923050 499 LDEIVKEVEAKAPILKRQREEyerAQKAVASLSVKLEQAMKEIQRLQEDTDKANKQSSVLERDNQR 564
Cdd:COG4942 176 LEALLAELEEERAALEALKAE---RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1326-1701 |
8.69e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 8.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1326 QVTAKTMAQHEELMKKTETMNvvmetnKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLE 1405
Cdd:TIGR00618 180 QLALMEFAKKKSLHGKAELLT------LRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1406 EDVKRWKArnqhlvSQQKDPDTEEYRKLLSEKEVHTKRIQQlteeiGRLKAEIARSNASLTNNQNLIQSLKEDLNkvrtE 1485
Cdd:TIGR00618 254 EQLKKQQL------LKQLRARIEELRAQEAVLEETQERINR-----ARKAAPLAAHIKAVTQIEQQAQRIHTELQ----S 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1486 KETIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVLVQeMQELKETLNQAETK 1565
Cdd:TIGR00618 319 KMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHT-LQQQKTTLTQKLQS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1566 SKSLESQVENLQKTLSEKETEARNLQEQtvqlqseLSRLRQDLQDRTTQEEQLRQQITEKEEktrkaivAAKSKIAHLAG 1645
Cdd:TIGR00618 398 LCKELDILQREQATIDTRTSAFRDLQGQ-------LAHAKKQQELQQRYAELCAAAITCTAQ-------CEKLEKIHLQE 463
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 966923050 1646 VKDQLTKENEELKQRNGALDQQKDELDVRITALKSQYEGRISRLERELREHQERHL 1701
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQD 519
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1050-1183 |
8.83e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1050 ESLNKEK--QVTEEVRK-----NIEVRLKESaEFQtQLEKKLMEVE---KEKQELQDDKRRAIESMEQQLSELKKTLSSV 1119
Cdd:PRK12704 52 EAIKKEAllEAKEEIHKlrnefEKELRERRN-ELQ-KLEKRLLQKEenlDRKLELLEKREEELEKKEKELEQKQQELEKK 129
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966923050 1120 QNEVQEALQRASTALsnEQQARRDcQEQAK--IAVEAQNKYERELMLHAADVEalQAAKEQVSKMA 1183
Cdd:PRK12704 130 EEELEELIEEQLQEL--ERISGLT-AEEAKeiLLEKVEEEARHEAAVLIKEIE--EEAKEEADKKA 190
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
105-343 |
8.83e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 105 LADQQSEIDGLKGRH---EKFKVESEQQYFEIEKRLSHSQeRLVNETREC---QSLRLELEKLSNQLKALTEKNKELEIA 178
Cdd:COG4913 612 LAALEAELAELEEELaeaEERLEALEAELDALQERREALQ-RLAEYSWDEidvASAEREIAELEAELERLDASSDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 179 QDRNIAIQSQFtrtkEELEAEKRDLIRTNERLSQELEYSTEDVKRLNEKLKE-SNTTKGELQLKLDELQASDVsvkyREK 257
Cdd:COG4913 691 EEQLEELEAEL----EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAAAL----GDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 258 RLEQEKELLHSQNTWLNTELKTKTDEL-----------------LALGREKGNEILELKCNLENkkEEVSRLEEQMNGLK 320
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELeramrafnrewpaetadLDADLESLPEYLALLDRLEE--DGLPEYEERFKELL 840
|
250 260
....*....|....*....|...
gi 966923050 321 TSNEHlqKHVEDLLTKLKEAKEQ 343
Cdd:COG4913 841 NENSI--EFVADLLSKLRRAIRE 861
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1468-1723 |
9.15e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.43 E-value: 9.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1468 NQNLIQSLkEDLNKVRTEKETIQKD---LDAKIIDIQEKVKTITQVkkigrryKTQYEELKAQQDKVM-ETSAQSSGDHQ 1543
Cdd:PLN02939 148 NQARLQAL-EDLEKILTEKEALQGKiniLEMRLSETDARIKLAAQE-------KIHVEILEEQLEKLRnELLIRGATEGL 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1544 EQHVLVQEMQELKEtlnqaetKSKSLESQVENLQKTLSE-KETEAR--NLQEQTVQLQSELSRLRQDL---QDRTTQEEQ 1617
Cdd:PLN02939 220 CVHSLSKELDVLKE-------ENMLLKDDIQFLKAELIEvAETEERvfKLEKERSLLDASLRELESKFivaQEDVSKLSP 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1618 LRQQIT-EKEEKTRKAIVAAKSKIAHLAGVKDQ---LTKENEELKQRNGALDQQK------DELDVRITALKSqyegRIS 1687
Cdd:PLN02939 293 LQYDCWwEKVENLQDLLDRATNQVEKAALVLDQnqdLRDKVDKLEASLKEANVSKfssykvELLQQKLKLLEE----RLQ 368
|
250 260 270
....*....|....*....|....*....|....*.
gi 966923050 1688 RLERELREHQERHLEQRDEPQEPSNKVPEQQRQITL 1723
Cdd:PLN02939 369 ASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSL 404
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
132-863 |
9.28e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 9.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 132 EIEKRLSHSQERLVNETRECQSLRLELEKLSNQLKALTEKNKELE-IAQDRNIAIQSQFTRTKEELEAEKRDLIRTNERL 210
Cdd:TIGR00606 238 EIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEkDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREK 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 211 SQELEYSTEDVKRLNEKLKESNTTKGELQLKLD--ELQASDVSVKYREKRLEQEKELLHSQNTWLNTELKTKtdellalg 288
Cdd:TIGR00606 318 ERELVDCQRELEKLNKERRLLNQEKTELLVEQGrlQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSE-------- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 289 REKGNEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSA 368
Cdd:TIGR00606 390 RQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 369 ADDSEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEQSK-DQMEKEMLEKIGKLEKELENVNDLLSATKRKgaILS 447
Cdd:TIGR00606 470 SDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADlDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDK--MDK 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 448 EEELAAMSPTAAAVAKIVKPGMKLTElynayvETQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAV 527
Cdd:TIGR00606 548 DEQIRKIKSRHSDELTSLLGYFPNKK------QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQL 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 528 ASLSVKL------EQAMKEIQRLQEDTDKANKQSSVLERDNQRMEIQIKDLSQQIRVLLMELE-----EARGNHVIRDEE 596
Cdd:TIGR00606 622 SSYEDKLfdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQrvfqtEAELQEFISDLQ 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 597 VSSADISSSSEVISQHLvsyrniEELQQQNQRLLVALrelgeTREREEQETTSSKITELQLKLESALTELEQLRKSRQHQ 676
Cdd:TIGR00606 702 SKLRLAPDKLKSTESEL------KKKEKRRDEMLGLA-----PGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQ 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 677 MQLVDSIVRQRDMYRILLSQTTgvaiplhasSLDDISLASTPKRPSTSQTVSTPAPVPVIESTEAIEAKAALKQlqEIFE 756
Cdd:TIGR00606 771 ETLLGTIMPEEESAKVCLTDVT---------IMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQ--HELD 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 757 NYKKEKAENEKI---QNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQE 833
Cdd:TIGR00606 840 TVVSKIELNRKLiqdQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE 919
|
730 740 750
....*....|....*....|....*....|
gi 966923050 834 QIINTMTQDLRGANEKLAVAEVRAENLKKE 863
Cdd:TIGR00606 920 KDQQEKEELISSKETSNKKAQDKVNDIKEK 949
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1570-1709 |
9.54e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.35 E-value: 9.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1570 ESQVENLQKTLSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQ-EEQLRQQITEKEEKTRKAIVAAKSKIahlagvkD 1648
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKlQEEEDKLLEEAEKEAQQAIKEAKKEA-------D 587
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966923050 1649 QLTKENEELKQRNGALDQQKDELDVRiTALKSQYEgrisrlerELREHQERHLEQRDEPQE 1709
Cdd:PRK00409 588 EIIKELRQLQKGGYASVKAHELIEAR-KRLNKANE--------KKEKKKKKQKEKQEELKV 639
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1090-1678 |
9.78e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 9.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1090 EKQELQD---DKRRAIESMEQQLSELKKTLSSVQNEVQEaLQRASTALSNEQQARRDCQEQAKIAVEAQNKYERelmlHA 1166
Cdd:COG3096 279 ERRELSEralELRRELFGARRQLAEEQYRLVEMARELEE-LSARESDLEQDYQAASDHLNLVQTALRQQEKIER----YQ 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1167 ADVEALQ----AAKEQVSKMASVRQHLEETTQKAESQLLECKASWEERERMLKD---------------EVSKCVCRCED 1227
Cdd:COG3096 354 EDLEELTerleEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVqqtraiqyqqavqalEKARALCGLPD 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1228 LEKQN-KLLHDQIEKLSDKVVASVKEGVQgplNVSLSEEGKSQ-EQILEILRFIRRE--------------KEIAETRFE 1291
Cdd:COG3096 434 LTPENaEDYLAAFRAKEQQATEEVLELEQ---KLSVADAARRQfEKAYELVCKIAGEversqawqtarellRRYRSQQAL 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1292 VAQVESLRYRQRVELLERELQELQDSLNAE---REKVQVTAKTM--AQHEELMKKTETMNVVMETnkmLREEKERLEQDL 1366
Cdd:COG3096 511 AQRLQQLRAQLAELEQRLRQQQNAERLLEEfcqRIGQQLDAAEEleELLAELEAQLEELEEQAAE---AVEQRSELRQQL 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1367 QQMQAKVRKLElDILP----LQEANAELSEKSG--------MLQAEKKLLEEDVKRWKARNQhlVSQQKDPDTEEYRKLL 1434
Cdd:COG3096 588 EQLRARIKELA-ARAPawlaAQDALERLREQSGealadsqeVTAAMQQLLEREREATVERDE--LAARKQALESQIERLS 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1435 SEKEVHTKRIQQLTEEIG-RLKAEI------------------ARsNASLTNNQNLIQSLKEDLNKVRTEKETIQKDLDA 1495
Cdd:COG3096 665 QPGGAEDPRLLALAERLGgVLLSEIyddvtledapyfsalygpAR-HAIVVPDLSAVKEQLAGLEDCPEDLYLIEGDPDS 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1496 -----------------KIIDIQEKVKTITQVKKIGRRYK-TQYEELKAQQDKVMETSAQSSGDhqeqhvlVQEMQELKE 1557
Cdd:COG3096 744 fddsvfdaeeledavvvKLSDRQWRYSRFPEVPLFGRAAReKRLEELRAERDELAEQYAKASFD-------VQKLQRLHQ 816
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966923050 1558 TLNQAETKSKSLESQvenlqktlSEKETEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQQIT-------------- 1623
Cdd:COG3096 817 AFSQFVGGHLAVAFA--------PDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQllnkllpqanllad 888
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966923050 1624 ----EKEEKTRKAIVAAKSKIAHLAGVKDQLTK-------------ENEELKQRNGALDQQKDELDVRITAL 1678
Cdd:COG3096 889 etlaDRLEELREELDAAQEAQAFIQQHGKALAQleplvavlqsdpeQFEQLQADYLQAKEQQRRLKQQIFAL 960
|
|
| |
