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Conserved domains on  [gi|914972163|ref|XP_013242472|]
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hypothetical protein K437DRAFT_225436 [Tilletiaria anomala UBC 951]

Protein Classification

CUE domain-containing protein( domain architecture ID 10199116)

CUE domain-containing protein similar to Candida albicans coupling of ubiquitin conjugation to ER degradation protein 1 (CUE1), a component of the endoplasmic reticulum-associated protein degradation (ERAD) pathway

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CUE_Cue1p_like cd14424
CUE domain found in yeast ubiquitin-binding protein CUE1 (Cue1p), CUE4 (Cue4p) and similar ...
48-84 5.67e-18

CUE domain found in yeast ubiquitin-binding protein CUE1 (Cue1p), CUE4 (Cue4p) and similar proteins; Cue1p, also called coupling of ubiquitin conjugation to ER degradation protein 1 or kinetochore-defect suppressor 4, is encoded by the open reading frame (ORF) YMR264W in yeast. It is an N-terminally membrane-anchored endoplasmic reticulum (ER) protein essential for the activity of the two major yeast RING finger ubiquitin ligases (E3s) implicated in ER-associated degradation (ERAD). It interacts with the ERAD ubiquitin-conjugating enzyme (E2) Ubc7p in vivo, stimulates Ubc7p E2 activity, and further activates ER-associated protein degradation. Cue1p contains a CUE domain which binds ubiquitin much more weakly than those of other CUE domain containing proteins. It also has an Ubc7p binding-domain at the C-terminal region which is required for Ubc7p-dependent ubiquitylation and for degradation of substrates in the ER. This family also includes Cue4p, also called coupling of ubiquitin conjugation to ER degradation protein 4. It is encoded by the open reading frame (ORF) YML101C in yeast. Cue4p contains a CUE domain which shows high level of similarity with that of Cue1p.


:

Pssm-ID: 270607  Cd Length: 37  Bit Score: 73.32  E-value: 5.67e-18
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 914972163  48 QELVDTVQAMFPQVPEASIRYDLSRTGNVEATCDRIL 84
Cdd:cd14424    1 PAMIESVQTMFPQLSVAQIRYDLLRTGSVEATVERIL 37
 
Name Accession Description Interval E-value
CUE_Cue1p_like cd14424
CUE domain found in yeast ubiquitin-binding protein CUE1 (Cue1p), CUE4 (Cue4p) and similar ...
48-84 5.67e-18

CUE domain found in yeast ubiquitin-binding protein CUE1 (Cue1p), CUE4 (Cue4p) and similar proteins; Cue1p, also called coupling of ubiquitin conjugation to ER degradation protein 1 or kinetochore-defect suppressor 4, is encoded by the open reading frame (ORF) YMR264W in yeast. It is an N-terminally membrane-anchored endoplasmic reticulum (ER) protein essential for the activity of the two major yeast RING finger ubiquitin ligases (E3s) implicated in ER-associated degradation (ERAD). It interacts with the ERAD ubiquitin-conjugating enzyme (E2) Ubc7p in vivo, stimulates Ubc7p E2 activity, and further activates ER-associated protein degradation. Cue1p contains a CUE domain which binds ubiquitin much more weakly than those of other CUE domain containing proteins. It also has an Ubc7p binding-domain at the C-terminal region which is required for Ubc7p-dependent ubiquitylation and for degradation of substrates in the ER. This family also includes Cue4p, also called coupling of ubiquitin conjugation to ER degradation protein 4. It is encoded by the open reading frame (ORF) YML101C in yeast. Cue4p contains a CUE domain which shows high level of similarity with that of Cue1p.


Pssm-ID: 270607  Cd Length: 37  Bit Score: 73.32  E-value: 5.67e-18
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 914972163  48 QELVDTVQAMFPQVPEASIRYDLSRTGNVEATCDRIL 84
Cdd:cd14424    1 PAMIESVQTMFPQLSVAQIRYDLLRTGSVEATVERIL 37
CUE pfam02845
CUE domain; CUE domains have been shown to bind ubiquitin. It has been suggested that CUE ...
48-84 9.17e-10

CUE domain; CUE domains have been shown to bind ubiquitin. It has been suggested that CUE domains are related to pfam00627 and this has been confirmed by the structure of the domain. CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2.


Pssm-ID: 427018  Cd Length: 42  Bit Score: 52.09  E-value: 9.17e-10
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 914972163   48 QELVDTVQAMFPQVPEASIRYDLSR-TGNVEATCDRIL 84
Cdd:pfam02845   2 EQMLETLKEMFPDLDEEVIRAVLEAsNGNVEAAINALL 39
CUE smart00546
Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs); CUE domains also ...
48-86 5.26e-09

Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs); CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)


Pssm-ID: 214715  Cd Length: 43  Bit Score: 49.80  E-value: 5.26e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 914972163    48 QELVDTVQAMFPQVPEASIRYDLS-RTGNVEATCDRILRE 86
Cdd:smart00546   3 DEALHDLKEMFPNLDEEVIEAVLEaNTGNVEATINNLLEG 42
 
Name Accession Description Interval E-value
CUE_Cue1p_like cd14424
CUE domain found in yeast ubiquitin-binding protein CUE1 (Cue1p), CUE4 (Cue4p) and similar ...
48-84 5.67e-18

CUE domain found in yeast ubiquitin-binding protein CUE1 (Cue1p), CUE4 (Cue4p) and similar proteins; Cue1p, also called coupling of ubiquitin conjugation to ER degradation protein 1 or kinetochore-defect suppressor 4, is encoded by the open reading frame (ORF) YMR264W in yeast. It is an N-terminally membrane-anchored endoplasmic reticulum (ER) protein essential for the activity of the two major yeast RING finger ubiquitin ligases (E3s) implicated in ER-associated degradation (ERAD). It interacts with the ERAD ubiquitin-conjugating enzyme (E2) Ubc7p in vivo, stimulates Ubc7p E2 activity, and further activates ER-associated protein degradation. Cue1p contains a CUE domain which binds ubiquitin much more weakly than those of other CUE domain containing proteins. It also has an Ubc7p binding-domain at the C-terminal region which is required for Ubc7p-dependent ubiquitylation and for degradation of substrates in the ER. This family also includes Cue4p, also called coupling of ubiquitin conjugation to ER degradation protein 4. It is encoded by the open reading frame (ORF) YML101C in yeast. Cue4p contains a CUE domain which shows high level of similarity with that of Cue1p.


Pssm-ID: 270607  Cd Length: 37  Bit Score: 73.32  E-value: 5.67e-18
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 914972163  48 QELVDTVQAMFPQVPEASIRYDLSRTGNVEATCDRIL 84
Cdd:cd14424    1 PAMIESVQTMFPQLSVAQIRYDLLRTGSVEATVERIL 37
CUE_AUP1_AMFR_like cd14376
CUE domain found in ancient ubiquitous protein 1 (AUP1), autocrine motility factor receptor ...
48-84 1.03e-12

CUE domain found in ancient ubiquitous protein 1 (AUP1), autocrine motility factor receptor (AMFR) and similar proteins; AUP1 is a component of the HRD1-SEL1L endoplasmic reticulum (ER) quality control complex and is essential for US11-mediated dislocation of class I MHC heavy chains. AMFR is an internalizing cell surface glycoprotein that is localized in both plasma membrane caveolae and the ER, and involves in the regulation of cellular adhesion, proliferation, motility and apoptosis, as well as in the process of learning and memory. Cue1p is an N-terminally membrane-anchored endoplasmic reticulum (ER) protein essential for the activity of the two major yeast RING finger ubiquitin ligases (E3s) implicated in ER-associated degradation (ERAD). This family also includes plant E3 ubiquitin protein ligases RIN2, RIN3, and similar proteins. Comparing with other CUE domain-containing proteins, some family members from higher eukaryotes do not bind monoubiquitin efficiently, since they carry LP, rather than FP among CUE domains.


Pssm-ID: 270559  Cd Length: 37  Bit Score: 59.80  E-value: 1.03e-12
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 914972163  48 QELVDTVQAMFPQVPEASIRYDLSRTGNVEATCDRIL 84
Cdd:cd14376    1 EEMVEQVQEVFPHIPREAIRRDLQRTNSVDLTINNIL 37
CUE pfam02845
CUE domain; CUE domains have been shown to bind ubiquitin. It has been suggested that CUE ...
48-84 9.17e-10

CUE domain; CUE domains have been shown to bind ubiquitin. It has been suggested that CUE domains are related to pfam00627 and this has been confirmed by the structure of the domain. CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2.


Pssm-ID: 427018  Cd Length: 42  Bit Score: 52.09  E-value: 9.17e-10
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 914972163   48 QELVDTVQAMFPQVPEASIRYDLSR-TGNVEATCDRIL 84
Cdd:pfam02845   2 EQMLETLKEMFPDLDEEVIRAVLEAsNGNVEAAINALL 39
CUE smart00546
Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs); CUE domains also ...
48-86 5.26e-09

Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs); CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)


Pssm-ID: 214715  Cd Length: 43  Bit Score: 49.80  E-value: 5.26e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 914972163    48 QELVDTVQAMFPQVPEASIRYDLS-RTGNVEATCDRILRE 86
Cdd:smart00546   3 DEALHDLKEMFPNLDEEVIEAVLEaNTGNVEATINNLLEG 42
CUE_AMFR cd14421
CUE domain found in autocrine motility factor receptor (AMFR) and similar proteins; AMFR is an ...
48-89 3.30e-07

CUE domain found in autocrine motility factor receptor (AMFR) and similar proteins; AMFR is an internalizing cell surface glycoprotein that is localized in both plasma membrane caveolae and the endoplasmic reticulum (ER), and involves in the regulation of cellular adhesion, proliferation, motility and apoptosis, as well as in the process of learning and memory. It is also called ER-protein gp78 that has been identified as a RING finger-dependent ubiquitin protein ligase (E3) implicated in degradation from the ER. AMFR contains an N-terminal RING-finger domain and a C-terminal CUE domain.


Pssm-ID: 270604  Cd Length: 41  Bit Score: 44.95  E-value: 3.30e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 914972163  48 QELVDTVQAMFPQVPEASIRYDLSRTGNVEATCDRILrEGAL 89
Cdd:cd14421    1 DAMAHQVQEMFPQVPLSVILADLRLTRSVEVTIENIL-EGRL 41
CUE_AUP1 cd14420
CUE domain found in ancient ubiquitous protein 1 (AUP1) and similar proteins; AUP1 is a ...
47-91 9.99e-07

CUE domain found in ancient ubiquitous protein 1 (AUP1) and similar proteins; AUP1 is a component of the HRD1-SEL1L endoplasmic reticulum (ER) quality control complex and is essential for US11-mediated dislocation of class I MHC heavy chains. It also binds to the membrane-proximal KVGFFKR motif of the cytoplasmic tail of the integrin alphaCTs that plays a crucial role in the inside-out signaling of alpha(IIb)beta(3). AUP1 is found in both the ER and in lipid droplets. It contains two conserved cytoplasmic domains, an acyltransferase domain, a CUE domain and an E2 ubiquitin conjugase G2 (Ube2g2)-binding domain (G2BR). The acyltransferase domain transfers fatty acids onto phospholipids and CUE domain participates in ubiquitin binding or in recruitment of ubiquitin-conjugating enzymes to the site of dislocation.


Pssm-ID: 270603  Cd Length: 45  Bit Score: 43.75  E-value: 9.99e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 914972163  47 PQELVDTVQAMFPQVPEASIRYDLSRTGNVEATCDRILrEGALPP 91
Cdd:cd14420    2 LARMAQQVKEVLPHVPLHVIRRDLEKTRNVDTTITNIL-EGRVKF 45
CUE cd14279
CUE domain found in ubiquitin-binding CUE proteins; This family includes many coupling of ...
48-84 9.68e-06

CUE domain found in ubiquitin-binding CUE proteins; This family includes many coupling of ubiquitin conjugation to endoplasmic reticulum degradation (CUE) domain containing proteins that are characterized by an FP and a di-leucine-like sequence and bind to monoubiquitin with varying affinities. Some higher eukaryotic CUE domain proteins do not bind monoubiquitin efficiently, since they carry LP, rather than FP among CUE domains. CUE domains form three-helix bundle structures and are distantly related to the ubiquitin-associated (UBA) domains which are widely occurring ubiquitin-binding motifs found in a broad range of cellular proteins in species ranging from yeast to human. The majority of family members contain one CUE domain, but some family members from fungi harbor two CUE domains.


Pssm-ID: 270465  Cd Length: 38  Bit Score: 40.91  E-value: 9.68e-06
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 914972163  48 QELVDTVQAMFPQVPEASIRYDLSRT-GNVEATCDRIL 84
Cdd:cd14279    1 DEKLEQLQEMFPDLDEEVLEDVLEANnGDVEAAIDALL 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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