NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|768419679|ref|XP_011550567|]
View 

40S ribosomal protein S29 [Plutella xylostella]

Protein Classification

40S ribosomal protein S29( domain architecture ID 10015282)

40S ribosomal protein S29 is essential for rRNA processing and ribosome biogenesis

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 5-56 3.24e-25

40S ribosomal protein S29; Provisional


:

Pssm-ID: 185518  Cd Length: 54  Bit Score: 87.05  E-value: 3.24e-25
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 768419679  5 NIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 56
Cdd:PTZ00218  3 HLFNTHPRTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
 
Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 5-56 3.24e-25

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 87.05  E-value: 3.24e-25
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 768419679  5 NIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 56
Cdd:PTZ00218  3 HLFNTHPRTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 7-54 8.26e-10

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 48.17  E-value: 8.26e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 768419679   7 WYSHPRKY--GQGSRSCRACSNRHGLIRKYGLniCRQCFREYAND---IGFKK 54
Cdd:pfam00253  2 LQKLPRNSspTRIRNRCRLTGRPRGVIRKFGL--CRICFRELALKgeiPGVKK 52
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 21-48 2.32e-03

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 31.91  E-value: 2.32e-03
                        10        20
                ....*....|....*....|....*...
gi 768419679 21 CRACSNRHGLIRKYGLniCRQCFREYAN 48
Cdd:COG0199  23 CELTGRPRGYYRKFGL--CRICFRELAH 48
 
Name Accession Description Interval E-value
PTZ00218 PTZ00218
40S ribosomal protein S29; Provisional
 5-56 3.24e-25

40S ribosomal protein S29; Provisional


Pssm-ID: 185518  Cd Length: 54  Bit Score: 87.05  E-value: 3.24e-25
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|..
gi 768419679  5 NIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 56
Cdd:PTZ00218  3 HLFNTHPRTYGKGSRQCRVCSNRHGLIRKYGLNVCRQCFRENAELIGFHKYR 54
rps14P PRK05766
30S ribosomal protein S14P; Reviewed
 10-56 5.05e-18

30S ribosomal protein S14P; Reviewed


Pssm-ID: 235598  Cd Length: 52  Bit Score: 68.77  E-value: 5.05e-18
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 768419679 10 HPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKKLD 56
Cdd:PRK05766  6 KKRKYGKGARECQRCGRKQGLIRKYGLYLCRQCFREVAPKLGFKKYS 52
Ribosomal_S14 pfam00253
Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 ...
 7-54 8.26e-10

Ribosomal protein S14p/S29e; This family includes both ribosomal S14 from prokaryotes and S29 from eukaryotes.


Pssm-ID: 459734  Cd Length: 54  Bit Score: 48.17  E-value: 8.26e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 768419679   7 WYSHPRKY--GQGSRSCRACSNRHGLIRKYGLniCRQCFREYAND---IGFKK 54
Cdd:pfam00253  2 LQKLPRNSspTRIRNRCRLTGRPRGVIRKFGL--CRICFRELALKgeiPGVKK 52
rpsN PRK08061
type Z 30S ribosomal protein S14;
21-48 1.93e-03

type Z 30S ribosomal protein S14;


Pssm-ID: 181216  Cd Length: 61  Bit Score: 32.15  E-value: 1.93e-03
                        10        20
                ....*....|....*....|....*...
gi 768419679 21 CRACSNRHGLIRKYGlnICRQCFREYAN 48
Cdd:PRK08061 24 CERCGRPHSVYRKFG--LCRICFRELAY 49
RpsN COG0199
Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 ...
 21-48 2.32e-03

Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S14 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439969  Cd Length: 60  Bit Score: 31.91  E-value: 2.32e-03
                        10        20
                ....*....|....*....|....*...
gi 768419679 21 CRACSNRHGLIRKYGLniCRQCFREYAN 48
Cdd:COG0199  23 CELTGRPRGYYRKFGL--CRICFRELAH 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH