|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
260-454 |
3.44e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 87.75 E-value: 3.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 260 ILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAV 339
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE------------ALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 340 HCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGFCEQRR 419
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170 180 190
....*....|....*....|....*....|....*
gi 767956413 420 KQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQ 454
Cdd:COG0457 165 ELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
197-464 |
7.05e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 81.21 E-value: 7.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 197 LKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQHALQRINR 276
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL-------------GLAYLRLGRYEEALADYEQ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 277 AIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAVHCYRQGAYQEGVLLLNK 356
Cdd:COG0457 68 ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE------------ALYNLGLALLELGRYDEAIEAYER 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 357 ALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGFCEQRRKQFQKAENHFSTAIRHN 436
Cdd:COG0457 136 ALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILT 215
|
250 260
....*....|....*....|....*...
gi 767956413 437 PQKAQYYLYRAKSRQLLQNIFGARQDVA 464
Cdd:COG0457 216 LAALAELLLLALALLLALRLAALALYQY 243
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
64-359 |
2.00e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 2.00e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR-------AEALLELA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 144 QCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG2956 84 QDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 224 YRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDG 303
Cdd:COG2956 164 IEALEKALKLDPDCARALLLLAE-------------LYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 767956413 304 AVEDFLKVLDmvtEDQEDMVRQAQRQLLLtyndfavhcyRQGAYQEGVLLLNKALR 359
Cdd:COG2956 231 ALELLRKALE---LDPSDDLLLALADLLE----------RKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
207-479 |
6.62e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 78.62 E-value: 6.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 207 YIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNPLDPS 286
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGN-------------LYRRRGEYDRAIRIHQKLLERDPDRAE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 287 LFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqAQRQLLLTYndfavhcYRQGAYQEGVLLLNKALRDEQQEKG 366
Cdd:COG2956 78 ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE-----ALRLLAEIY-------EQEGDWEKAIEVLERLLKLGPENAH 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 367 LYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYR 446
Cdd:COG2956 146 AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQG-------DYEEAIAALERALEQDPDYLPALPRL 218
|
250 260 270
....*....|....*....|....*....|...
gi 767956413 447 AKSRQLLQNIFGARQDVATVLLLNPKQPKLSLL 479
Cdd:COG2956 219 AELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
333-472 |
2.36e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.58 E-value: 2.36e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 333 TYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKM 412
Cdd:COG0457 10 AYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 413 GfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPK 472
Cdd:COG0457 90 G-------RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPD 142
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
338-473 |
1.71e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.99 E-value: 1.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 338 AVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceq 417
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG---- 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 767956413 418 rrkQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPKQ 473
Cdd:COG4783 87 ---DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
210-504 |
9.54e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.03 E-value: 9.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 210 RARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKMVAQAQQARQDAGILAVQGKLQHALQRINRAIENNPLDPSLFL 289
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 290 frgtmyRRLQEFDGAVEDFLKVLdmvtedqedmvrQAQRQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLYI 369
Cdd:COG3914 89 ------QALGRYEEALALYRRAL------------ALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 370 NRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYRAKS 449
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG-------RLEEAIAAYRRALELDPDNADAHSNLLFA 223
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 767956413 450 RQLLQNIFGARQDVATVLLLNPKQPKLSLLMTNLFPGMSVEEVLSTQIAHLARLQ 504
Cdd:COG3914 224 LRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVA 278
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
260-398 |
1.06e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.07 E-value: 1.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 260 ILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAV 339
Cdd:COG4783 13 ALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE------------ARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 767956413 340 HCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQD 398
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
288-484 |
1.29e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.07 E-value: 1.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 288 FLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqAQRQLLLTYndfavhcYRQGAYQEGVLLLNKALRDEQQEKGL 367
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVE-----AHLALGNLY-------RRRGEYDRAIRIHQKLLERDPDRAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 368 YINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQekmgfceQRRKQFQKAENHFSTAIRHNPQKAQYYLYRA 447
Cdd:COG2956 79 LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------EQEGDWEKAIEVLERLLKLGPENAHAYCELA 151
|
170 180 190
....*....|....*....|....*....|....*..
gi 767956413 448 KSRQLLQNIFGARQDVATVLLLNPKQPKLSLLMTNLF 484
Cdd:COG2956 152 ELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELY 188
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
63-441 |
1.42e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 74.73 E-value: 1.42e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 63 EYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQ 142
Cdd:TIGR02917 24 ELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 143 GQclfeqcafldalnvFSHAAELQPEKPCFRYRCMACLLALKQHqACLTLITNELKQDTTNADVYIFRARLYNFLQKPHL 222
Cdd:TIGR02917 104 GK--------------FQQVLDELPGKTLLDDEGAAELLALRGL-AYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQL 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 223 --CYRDLHSA-------LLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQHALQRINRAIENNPLDPSLFLFRGT 293
Cdd:TIGR02917 169 alAENRFDEAralidevLTADPGNVDALLLK-------------GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 294 MYRRLQEFDGAvedflkvldmvTEDQEDMVRQAQRQLLLTYNDFAVHcYRQGAYQEGVLLLNKALR-DEQQEKGLYINrG 372
Cdd:TIGR02917 236 ILIEAGEFEEA-----------EKHADALLKKAPNSPLAHYLKALVD-FQKKNYEDARETLQDALKsAPEYLPALLLA-G 302
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956413 373 DCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQ 441
Cdd:TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLG-------RVDEAIATLSPALGLDPDDPA 364
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
64-280 |
5.02e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 69.65 E-value: 5.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-------AEALNNLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 144 QCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 767956413 224 YRDLHSALLLNPKHPQARMLLQKMVAQAQQARQDAGILAVQGKLQHALQRINRAIEN 280
Cdd:COG0457 164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
368-475 |
3.69e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.95 E-value: 3.69e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 368 YINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYRA 447
Cdd:COG0457 11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-------RYEEALADYEQALELDPDDAEALNNLG 83
|
90 100
....*....|....*....|....*...
gi 767956413 448 KSRQLLQNIFGARQDVATVLLLNPKQPK 475
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAE 111
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
264-484 |
4.01e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.45 E-value: 4.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 264 QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDmVTEDQEdmvrQAQRQLLLTYndfavhcYR 343
Cdd:COG2956 21 NGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE-RDPDRA----EALLELAQDY-------LK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 344 QGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQekmgfceQRRKQFQ 423
Cdd:COG2956 89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELY-------LEQGDYD 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767956413 424 KAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPKQPKLSLLMTNLF 484
Cdd:COG2956 162 EAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
88-390 |
7.03e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.18 E-value: 7.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 88 LHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclfeqcaFLDALNVFSHAAELQP 167
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR-------YEEALADYEQALELDP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 168 EkpcfryrcmacllalkqhqacltlitnelkqdttNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKm 247
Cdd:COG0457 74 D----------------------------------DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGL- 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 248 vaqaqqarqdagILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQ 327
Cdd:COG0457 119 ------------ALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEA 186
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767956413 328 RQLLLTYNDFAvhcyRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQ 390
Cdd:COG0457 187 ALALAAAEVLL----ALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
324-474 |
1.40e-11 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 64.94 E-value: 1.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 324 RQAQRQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKG-------------LYINRGDCFFQLGNLAFAEADYQQ 390
Cdd:COG4785 19 ASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralalpdlaqLYYERGVAYDSLGDYDLAIADFDQ 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 391 ALALSPQD-EGANTRmgllqekmGFCEQRRKQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLL 469
Cdd:COG4785 99 ALELDPDLaEAYNNR--------GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALEL 170
|
....*
gi 767956413 470 NPKQP 474
Cdd:COG4785 171 DPNDP 175
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
60-188 |
2.44e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.13 E-value: 2.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 60 KVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVL 139
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDE-------PEAR 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 767956413 140 YLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQA 188
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
270-399 |
2.86e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 2.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 270 ALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQRQllltyndfavhcYRQGAYQE 349
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL------------LAAGDTEE 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 767956413 350 GVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDE 399
Cdd:COG4235 70 AEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
62-214 |
3.53e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.94 E-value: 3.53e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 62 REYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDnckHLErltfVLYL 141
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPD---FAE----AYLN 151
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767956413 142 QGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLY 214
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
140-414 |
4.07e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 64.37 E-value: 4.07e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 140 YLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQK 219
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 220 PHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQ 299
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLL-------------AEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 300 EFDGAVEDFLKVLdmvtEDQEDMVRqAQRQLLLTYndfavhcYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLG 379
Cdd:COG2956 159 DYDEAIEALEKAL----KLDPDCAR-ALLLLAELY-------LEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
250 260 270
....*....|....*....|....*....|....*
gi 767956413 380 NLAFAEADYQQALALSPQDEGANTRMGLLQEKMGF 414
Cdd:COG2956 227 DPEEALELLRKALELDPSDDLLLALADLLERKEGL 261
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
291-438 |
8.98e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 8.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 291 RGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqAQRQLLLTYndfavhcYRQGAYQEGVLLLNKALRDEQQEKGLYIN 370
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPE-----AFALLGEIL-------LQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956413 371 RGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQ 438
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG-------RPDEAIAALEKALELDPD 138
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
325-446 |
2.96e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 61.08 E-value: 2.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 325 QAQRQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTR 404
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 767956413 405 MGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYR 446
Cdd:COG4785 147 RGIALYYLG-------RYELAIADLEKALELDPNDPERALWL 181
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
319-471 |
7.94e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 7.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 319 QEDMVRQAQRQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINrgdCFFQLGNLAFAEADYQQALALSPQD 398
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDN---LYNKLGDFEESLALLEQALQLDPNN 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767956413 399 EGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNP 471
Cdd:COG5010 88 PELYYNLALLYSRSG-------DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
190-327 |
1.21e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.94 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 190 LTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdAGILAVQGKLQH 269
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL-------------AEALLAAGDTEE 69
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 767956413 270 ALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQ 327
Cdd:COG4235 70 AEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
264-434 |
3.13e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.00 E-value: 3.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 264 QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAqrqllLTYndfavhcYR 343
Cdd:COG4785 86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG-----IAL-------YY 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 344 QGAYQEGVLLLNKALRDEQQEKGLYINRgdcffqlgNLAFAEADYQQALALSPQDEGANTrmgllqekmgfceQRRKQFQ 423
Cdd:COG4785 154 LGRYELAIADLEKALELDPNDPERALWL--------YLAERKLDPEKALALLLEDWATAY-------------LLQGDTE 212
|
170
....*....|.
gi 767956413 424 KAENHFSTAIR 434
Cdd:COG4785 213 EARELFKLALA 223
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
58-181 |
5.37e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 59.62 E-value: 5.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKhlerltf 137
Cdd:COG3914 109 PDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAE------- 181
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 767956413 138 VLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLL 181
Cdd:COG3914 182 ALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALR 225
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
58-211 |
8.19e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 56.85 E-value: 8.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTF 137
Cdd:COG4785 70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDY-------AY 142
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767956413 138 VLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLIT-----NELKQDTTNADVYIFRA 211
Cdd:COG4785 143 AYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEdwataYLLQGDTEEARELFKLA 221
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
321-447 |
9.19e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 9.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 321 DMVRQAQRQLLLTYNDF------AVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALAL 394
Cdd:COG4235 1 EAIARLRQALAANPNDAegwlllGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 767956413 395 SPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYRA 447
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQG-------DYAEAIAAWQKLLALLPADAPARLLEA 126
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
374-472 |
1.60e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 374 CFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENhFSTAIRHNPQKAQYYLYRAKSRQLL 453
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-------RYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
|
90
....*....|....*....
gi 767956413 454 QNIFGARQDVATVLLLNPK 472
Cdd:COG3063 73 GDYDEALAYLERALELDPS 91
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
64-233 |
3.37e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 55.40 E-value: 3.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQG 143
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 144 QclfeqcaFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLC 223
Cdd:COG0457 159 R-------YEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLL 231
|
170
....*....|
gi 767956413 224 YRDLHSALLL 233
Cdd:COG0457 232 ALRLAALALY 241
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
63-244 |
3.49e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 57.31 E-value: 3.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 63 EYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQ 142
Cdd:COG3914 46 LLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLAL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 143 GQclfeqcaFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHL 222
Cdd:COG3914 126 GR-------LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEE 198
|
170 180
....*....|....*....|..
gi 767956413 223 CYRDLHSALLLNPKHPQARMLL 244
Cdd:COG3914 199 AIAAYRRALELDPDNADAHSNL 220
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
349-472 |
4.66e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.32 E-value: 4.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 349 EGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENH 428
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-------DTEEAEEL 73
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 767956413 429 FSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPK 472
Cdd:COG4235 74 LERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
64-200 |
1.71e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.58 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQG 143
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 767956413 144 QclfeqcaFLDALNVFSHAAELQPEKPCFRYRCMAcLLALKQHQACLTLITNELKQD 200
Cdd:COG2956 227 D-------PEEALELLRKALELDPSDDLLLALADL-LERKEGLEAALALLERQLRRH 275
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
80-213 |
1.82e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 80 AVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQGQCLFEQCAFLDALNVF 159
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-------ADALLDLAEALLAAGDTEEAEELL 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 767956413 160 SHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARL 213
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
64-168 |
1.87e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.77 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQG 143
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN-------PEALYLLG 92
|
90 100
....*....|....*....|....*
gi 767956413 144 QCLFEQCAFLDALNVFSHAAELQPE 168
Cdd:COG4235 93 LAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
72-167 |
3.94e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 50.34 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 72 LEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclfeqca 151
Cdd:COG5010 65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ------- 137
|
90
....*....|....*.
gi 767956413 152 FLDALNVFSHAAELQP 167
Cdd:COG5010 138 DDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
72-168 |
8.17e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.86 E-value: 8.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 72 LEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQnLRRAYSLQQDNCKHLERLTFVLYLQGQclfeqca 151
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGD------- 74
|
90
....*....|....*..
gi 767956413 152 FLDALNVFSHAAELQPE 168
Cdd:COG3063 75 YDEALAYLERALELDPS 91
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
64-497 |
3.78e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 50.37 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 64 YYSRGQQCLEQ-ADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRrAYSLQQD-----NCKHLERL-- 135
Cdd:TIGR00990 162 YYSNRAACHNAlGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT-ASCIIDGfrneqSAQAVERLlk 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 136 TFVLYLQGQCLFEQCAFLDAlnVFSHAAELQPEKPCFRYRCMACLLALKQH----QACLTLITNELKQDTTNAD-VYIFR 210
Cdd:TIGR00990 241 KFAESKAKEILETKPENLPS--VTFVGNYLQSFRPKPRPAGLEDSNELDEEtgngQLQLGLKSPESKADESYEEaARAFE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 211 ARLYNFLQKPHLCYRDLHSALL--LNPKHPQARMLLQKMV----AQAQQARQDAGILAVQGKLQHALQRINRAIENNPLD 284
Cdd:TIGR00990 319 KALDLGKLGEKEAIALNLRGTFkcLKGKHLEALADLSKSIeldpRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 285 PSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDqedmvrqaqrqlLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQE 364
Cdd:TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF------------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 365 KGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGFCEQRRKQFQKAENHFSTAIRHNPQKAQYYL 444
Cdd:TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 767956413 445 YRAKsrQLLQnifgaRQDVATVLLLNPKQPKLSLLMTNLFPGMSVEEVLSTQI 497
Cdd:TIGR00990 547 TMAQ--LLLQ-----QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQI 592
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
295-396 |
5.86e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 45.55 E-value: 5.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 295 YRRLQEFDGAVEDFLKVLdmvtedqedmvrQAQRQLLLTYNDFAVHCYRQGAYQEGvLLLNKALRDEQQEKGLYINRGDC 374
Cdd:COG3063 2 YLKLGDLEEAEEYYEKAL------------ELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAEL 68
|
90 100
....*....|....*....|..
gi 767956413 375 FFQLGNLAFAEADYQQALALSP 396
Cdd:COG3063 69 LLELGDYDEALAYLERALELDP 90
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
42-425 |
7.31e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 7.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 42 FQSICDVKPKVTGLTVPLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVdfYALRAEAYLQLC--DFSSAAQNLR 119
Cdd:TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSL--YAKLGLAQLALAenRFDEARALID 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 120 RAYSLQQDNCKhlerltfVLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQ 199
Cdd:TIGR02917 184 EVLTADPGNVD-------ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKK 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 200 DTTNADVYIFRArLYNFLQKPHLCYRD-LHSALLLNP-----------------KHPQARMLLQKMVAQAQQARQDAGIL 261
Cdd:TIGR02917 257 APNSPLAHYLKA-LVDFQKKNYEDAREtLQDALKSAPeylpalllagaseyqlgNLEQAYQYLNQILKYAPNSHQARRLL 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 262 AV----QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQRQLLLTYNDF 337
Cdd:TIGR02917 336 ASiqlrLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 338 AVHCYRQGAYQE------GVLLLNKALRDEQQEKGL----------------YINRGDCFFQLGNLAFAEADYQQALALS 395
Cdd:TIGR02917 416 AIADLETAAQLDpelgraDLLLILSYLRSGQFDKALaaakklekkqpdnaslHNLLGAIYLGKGDLAKAREAFEKALSIE 495
|
410 420 430
....*....|....*....|....*....|
gi 767956413 396 PQDEGANTRMGLLQEKMGFCEQRRKQFQKA 425
Cdd:TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKV 525
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
74-483 |
7.70e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.70 E-value: 7.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 74 QADWETAVLLFSRALHLDPQLVdfYALR--AEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclFEQCA 151
Cdd:TIGR02917 308 LGNLEQAYQYLNQILKYAPNSH--QARRllASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD--FEKAA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 152 FLdalnvFSHAAELQPEkpcfryrcmacllalkqhqacltlitnelkqdttNADVYIFRARLYNFLQKPHLCYRDLHSAL 231
Cdd:TIGR02917 384 EY-----LAKATELDPE----------------------------------NAAARTQLGISKLSQGDPSEAIADLETAA 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 232 LLNPKHPQARMLLqkmvaqaqqarqdagILAV--QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFL 309
Cdd:TIGR02917 425 QLDPELGRADLLL---------------ILSYlrSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 310 KVL----------------DMVTEDQEDMVRQAQRQLLLTYNDFAVHC------YRQGAYQEGVLLLNKALRDEQQEKGL 367
Cdd:TIGR02917 490 KALsiepdffpaaanlariDIQEGNPDDAIQRFEKVLTIDPKNLRAILalaglyLRTGNEEEAVAWLEKAAELNPQEIEP 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 368 YINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQekmgfceQRRKQFQKAENHFSTAIRHNPQKAQYYLYRA 447
Cdd:TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ-------LAAGDLNKAVSSFKKLLALQPDSALALLLLA 642
|
410 420 430
....*....|....*....|....*....|....*.
gi 767956413 448 KSRQLLQNIFGARQDVATVLLLNPKQPKLSLLMTNL 483
Cdd:TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
64-143 |
8.17e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 49.61 E-value: 8.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQG 143
Cdd:COG3914 149 YLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC 228
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
384-484 |
1.19e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 384 AEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDV 463
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLG-------RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELL 74
|
90 100
....*....|....*....|..
gi 767956413 464 ATVLLLNPKQPK-LSLLMTNLF 484
Cdd:COG4235 75 ERALALDPDNPEaLYLLGLAAF 96
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
342-437 |
1.27e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.39 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 342 YRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEAdYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQ 421
Cdd:COG3063 3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELG-------D 74
|
90
....*....|....*.
gi 767956413 422 FQKAENHFSTAIRHNP 437
Cdd:COG3063 75 YDEALAYLERALELDP 90
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
67-448 |
1.30e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 48.83 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 67 RGQQCLEQADWETAVLLFSRALHLDPQLVdFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERltfvlylqgqcl 146
Cdd:TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNR------------ 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 147 feQCAFLDALNVFSHAAeLQPEKPC----FRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRArlyNFLQ--KP 220
Cdd:TIGR00990 200 --RANAYDGLGKYADAL-LDLTASCiidgFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVG---NYLQsfRP 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 221 HLCYRDLHSALLLNPKhpQARMLLQKmvaqaqqarqdaGILAVQGKLQHALQRINRAIEN----NPLDPSLFL---FRGT 293
Cdd:TIGR00990 274 KPRPAGLEDSNELDEE--TGNGQLQL------------GLKSPESKADESYEEAARAFEKaldlGKLGEKEAIalnLRGT 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 294 MYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQRQLLL-----TYNDFavhcyrqgayqegvlllNKALRDEQQEKGLY 368
Cdd:TIGR00990 340 FKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELgdpdkAEEDF-----------------DKALKLNSEDPDIY 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 369 INRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGfceqrrkQFQKAENHFSTAIRHNPQKAQYYLYRAK 448
Cdd:TIGR00990 403 YHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEG-------SIASSMATFRRCKKNFPEAPDVYNYYGE 475
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
368-398 |
2.14e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 42.02 E-value: 2.14e-05
10 20 30
....*....|....*....|....*....|.
gi 767956413 368 YINRGDCFFQLGNLAFAEADYQQALALSPQD 398
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
63-144 |
2.34e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 47.24 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 63 EYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNckhlerlTFVLYLQ 142
Cdd:cd24142 2 ELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG-------GYEKYLY 74
|
...
gi 767956413 143 -GQ 144
Cdd:cd24142 75 lGQ 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
329-397 |
2.59e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.14 E-value: 2.59e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767956413 329 QLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKG--------LYINRGDCFFQLGNLAFAEADYQQALALSPQ 397
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGpdhpltatTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
264-475 |
2.86e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.77 E-value: 2.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 264 QGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDqEDMVRQAQRQLLLtyndfavhcyr 343
Cdd:TIGR02917 35 KNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK-NQVLPLLARAYLL----------- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 344 QGAYQEGV-LLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDegANTRMGLLQEKM---------- 412
Cdd:TIGR02917 103 QGKFQQVLdELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALaenrfdeara 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 413 -------------------GFCEQRRKQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPKQ 473
Cdd:TIGR02917 181 lidevltadpgnvdalllkGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260
|
..
gi 767956413 474 PK 475
Cdd:TIGR02917 261 PL 262
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
138-282 |
3.09e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 3.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 138 VLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFL 217
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956413 218 QKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQRINRAIENNP 282
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLAR-------------AYRALGRPDEAIAALEKALELDP 137
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
72-244 |
3.77e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 45.68 E-value: 3.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 72 LEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLcDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQCLFEQCA 151
Cdd:COG4785 10 LALALAAAAASKAAILLAALLFAAVLALAIALADLAL-ALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 152 FLDALNVFSHAAELQPEKP-CFRYRCMAcLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSA 230
Cdd:COG4785 89 YDLAIADFDQALELDPDLAeAYNNRGLA-YLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
170
....*....|....
gi 767956413 231 LLLNPKHPQARMLL 244
Cdd:COG4785 168 LELDPNDPERALWL 181
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
195-479 |
5.50e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.00 E-value: 5.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 195 NELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHAL-QR 273
Cdd:TIGR02917 47 NALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLAR-------------AYLLQGKFQQVLdEL 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 274 INRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEDMVRQAQrqLLLTYNDFAvhcyrqgayqEGVLL 353
Cdd:TIGR02917 114 PGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQ--LALAENRFD----------EARAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 354 LNKALR-DEQQEKGLYInRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMG--LLQEKmgfceqrrkQFQKAENHFS 430
Cdd:TIGR02917 182 IDEVLTaDPGNVDALLL-KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAtiLIEAG---------EFEEAEKHAD 251
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 767956413 431 TAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPKQPKLSLL 479
Cdd:TIGR02917 252 ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLL 300
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
58-143 |
6.31e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.49 E-value: 6.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTF 137
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254
|
....*.
gi 767956413 138 VLYLQG 143
Cdd:COG2956 255 LERKEG 260
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
204-361 |
1.01e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 204 ADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKMVAQAQQARQDAGILAVQGKLQHALQRINRAIENNPL 283
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956413 284 DPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQEdmvrqaqrqlllTYNDFAVHCYRQGAYQEGVLLLNKALRDE 361
Cdd:COG5010 87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------------AYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
372-413 |
1.30e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 39.76 E-value: 1.30e-04
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 767956413 372 GDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMG 413
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
342-447 |
1.69e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.90 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 342 YRQGAYQEGVLLLNKALR----DEQQEKGLYiNRGDCFFQLGNLAFAEADYQQALALSPQDEGAntRMGLLqeKMGFCEQ 417
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKrypnSPLAPDALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKA--PDALL--KLGLSYL 78
|
90 100 110
....*....|....*....|....*....|....*
gi 767956413 418 RRKQFQKAENHFSTAIRHNP-----QKAQYYLYRA 447
Cdd:COG1729 79 ELGDYDKARATLEELIKKYPdseaaKEARARLARL 113
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
368-398 |
1.95e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 1.95e-04
10 20 30
....*....|....*....|....*....|.
gi 767956413 368 YINRGDCFFQLGNLAFAEADYQQALALSPQD 398
Cdd:smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
76-124 |
3.03e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 44.01 E-value: 3.03e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 767956413 76 DWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSL 124
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL 65
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
139-247 |
3.81e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 139 LYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQ 218
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQG 99
|
90 100
....*....|....*....|....*....
gi 767956413 219 KPHLCYRDLHSALLLNPKHPQARMLLQKM 247
Cdd:COG4235 100 DYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
101-178 |
7.04e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 42.62 E-value: 7.04e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767956413 101 RAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLtfvlylqGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMA 178
Cdd:cd24142 6 KAEELLDQGNFELALKFLQRALELEPNNVEALELL-------GEILLELGDVEEAREVLLRAIELDPDGGYEKYLYLG 76
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
316-449 |
9.38e-04 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 41.55 E-value: 9.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 316 TEDQEDMVrQAQRQLLLTYndfavhcYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALS 395
Cdd:TIGR02521 24 TTDRNKAA-KIRVQLALGY-------LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 767956413 396 PQDEGANTRMGLLqekmgFCEQrrKQFQKAENHFSTAIrhnpqKAQYYLYRAKS 449
Cdd:TIGR02521 96 PNNGDVLNNYGTF-----LCQQ--GKYEQAMQQFEQAI-----EDPLYPQPARS 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
64-128 |
1.46e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 1.46e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956413 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDN 128
Cdd:COG4235 54 LLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
367-397 |
1.49e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 36.73 E-value: 1.49e-03
10 20 30
....*....|....*....|....*....|.
gi 767956413 367 LYINRGDCFFQLGNLAFAEADYQQALALSPQ 397
Cdd:pfam07719 3 ALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
58-279 |
1.51e-03 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 42.28 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 58 PLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTF 137
Cdd:TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 138 VLYLQG-----QCLFEQCA--FLDALNVFSHAAELQPEKPCFRYrcmacllALKQHQACLTLiTNELKQDTTNADVYIFR 210
Cdd:TIGR00990 442 TQYKEGsiassMATFRRCKknFPEAPDVYNYYGELLLDQNKFDE-------AIEKFDTAIEL-EKETKPMYMNVLPLINK 513
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767956413 211 ARLY-----NFLQKPHLCYRdlhsALLLNPKHPQARMLLQKMvaqaqqarqdagiLAVQGKLQHALQRINRAIE 279
Cdd:TIGR00990 514 ALALfqwkqDFIEAENLCEK----ALIIDPECDIAVATMAQL-------------LLQQGDVDEALKLFERAAE 570
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
180-294 |
1.52e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.60 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 180 LLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLqkmvaqaqqarqdaG 259
Cdd:COG4235 27 YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL--------------G 92
|
90 100 110
....*....|....*....|....*....|....*.
gi 767956413 260 ILAVQ-GKLQHALQRINRAIENNPLDPSLFLFRGTM 294
Cdd:COG4235 93 LAAFQqGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
64-125 |
1.55e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 1.55e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767956413 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQ 125
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
213-314 |
3.09e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 213 LYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKmvaqaqqarqdagILAVQGKLQHALQrINRAIENNPLDPSLFLFRG 292
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGL-------------LLLEQGRYDEAIA-LEKALKLDPNNAEALLNLA 66
|
90 100
....*....|....*....|..
gi 767956413 293 TMYRRLQEFDGAVEDFLKVLDM 314
Cdd:COG3063 67 ELLLELGDYDEALAYLERALEL 88
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
62-108 |
3.48e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 35.91 E-value: 3.48e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 767956413 62 REYYSRGQqcleqadWETAVLLFSRALHLDPQLVDFYALRAEAYLQL 108
Cdd:pfam13414 2 DAYYEQGK-------YEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
72-200 |
4.01e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 72 LEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQclfeqca 151
Cdd:COG5010 31 LAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD------- 103
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 767956413 152 FLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQD 200
Cdd:COG5010 104 KDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| COG3899 |
COG3899 |
Predicted ATPase [General function prediction only]; |
338-542 |
4.44e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443106 [Multi-domain] Cd Length: 1244 Bit Score: 40.61 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 338 AVHCYRQGAYQEGVLLLNKALR------DEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEK 411
Cdd:COG3899 712 ARRALARGAYAEALRYLERALEllppdpEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPAS 791
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 412 ----MGFCEQRRKQFQKAENHFSTAIRHNpQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPKQPKLSLLMTNLFPGM 487
Cdd:COG3899 792 arayANLGLLLLGDYEEAYEFGELALALA-ERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALAL 870
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767956413 488 SVEEVLSTQIAHLARLQLEQMVEGSLQAGSPQGIVGMLKRHELERQKALALQHSW 542
Cdd:COG3899 871 LALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAA 925
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
381-474 |
4.53e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 4.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767956413 381 LAFAEADYQQALALSPQDEGANTRMGLLQEKMGFCEQRRKQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGAR 460
Cdd:COG5010 29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108
|
90
....*....|....
gi 767956413 461 QDVATVLLLNPKQP 474
Cdd:COG5010 109 EYYEKALALSPDNP 122
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
64-128 |
6.53e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 37.86 E-value: 6.53e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767956413 64 YYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDN 128
Cdd:COG4783 75 RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
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|
| |
