|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
1-490 |
0e+00 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 733.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 1 MPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPS 80
Cdd:PLN02265 105 ISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPE 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 81 DIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTD 160
Cdd:PLN02265 185 DINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPPIINGAHSAITLDTKNVFIECTATD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 161 FTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSE 240
Cdd:PLN02265 265 LTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYINSSIGVSLDAEEVASLLNKMQLQAE 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 241 VIG-DGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALC 319
Cdd:PLN02265 345 QSSdDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQPLNQFSDLLRAEVAMAGFTEVLTWILC 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 320 SQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLC 399
Cdd:PLN02265 425 SHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPIKLFEVSDVVLLDESKDVGARNSRRLA 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 400 AVYYNKNPGFEIIHGLLDRIMQLLDVPPGE--DKGGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTM 477
Cdd:PLN02265 505 ALYCGTTSGFEVIHGLVDRIMEVLGIPFVEigDNNGYYVEPSNEPEYFPGRQASIIYKGKHVGTFGIVHPEVLNNFDIPD 584
|
490
....*....|...
gi 767916292 478 PCSSLEINVGPFL 490
Cdd:PLN02265 585 PCSFLELDLEPLL 597
|
|
| pheT_arch |
TIGR00471 |
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA ... |
8-490 |
3.50e-153 |
|
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273096 [Multi-domain] Cd Length: 551 Bit Score: 447.66 E-value: 3.50e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 8 KLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPL 87
Cdd:TIGR00471 86 KLTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKVAIGIHDLDKVEFPFHYKAVSPNGIKFVPL 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 88 NKTKEYTACELMNIYKTDnhlKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTKAKIV 167
Cdd:TIGR00471 166 NSDQEMTPDEILEEHPKG---IRYAHIIEDSDKFPLILDSKDDVLSMPPIINSELTKLTVNTRNLLIDVTGTDKTAVEIT 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 168 LDIIVTMFSEYCENQFTVEaaEVVFPNGKSHtFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVigDGNQ 247
Cdd:TIGR00471 243 LNIACTMFADRGDGRITVV--EVERPDEHLG-QPNLAPRFMEVSVEYINSLLGLNLSADEIAHSLKKMRLDAVQ--SDEK 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 248 IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADK 327
Cdd:TIGR00471 318 LKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKR 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 328 LgvDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNP 407
Cdd:TIGR00471 398 M--RIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSEA 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 408 GFEIIHGLLDRIMQLLDVppgedkgGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVG 487
Cdd:TIGR00471 476 NFNEIKSIVAALARELGI-------EYEIEESEHPSFIPGRGAKIVFEGKAIGHFGEIHPEVLTNFELEFPVSAFEVNIE 548
|
...
gi 767916292 488 PFL 490
Cdd:TIGR00471 549 VFL 551
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
278-486 |
2.39e-62 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 202.40 E-value: 2.39e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 278 IQMTLPKTYTIANQ-FPLNKLTELLRHDMAAAGFTEALTFALCSQEDiADKLGVDISATKAVHISNPKTAEFQVARTTLL 356
Cdd:pfam17759 1 IPSTLPKGPTTGGGlTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKD-LDKLLEDDPRRKAVKLANPLSEELSVMRTSLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 357 PGLLKTIAANRKMPLP-LKLFEISDIVIKDSnTDVGAKNYRHLCAVYYNK-----------NPGFEIIHGLLDRIMQLLD 424
Cdd:pfam17759 80 PGLLETLAYNLNRGNPdVRLFEIGRVFLPDE-LEELPREPRRLAGLLTGKrlpeswqgkarPVDFYDLKGIVEALLAALG 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767916292 425 VppgedkGGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINV 486
Cdd:pfam17759 159 I------DDYEFEAADHPALHPGRSAEILVGGKVIGFIGELHPEVAKNFDLPQPVYVFELDL 214
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
293-489 |
3.92e-53 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 177.84 E-value: 3.92e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 293 PLNKLTELLRHDMAAAGFTEALTFALCSQEDiADKLGVDisATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMP-L 371
Cdd:cd00769 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEE-AELFDGG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKnK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 372 PLKLFEISDIVIKDSNtdvGAKNYRHLCAVYYNK-----------NPGFEIIHGLLDRIMQLLdvppgEDKGGYVIKASE 440
Cdd:cd00769 78 PLRLFEIGRVFLKDED---GPEEEEHLAALLSGNrepeswqgkgrPVDFYDAKGILEALLRAL-----GIIVEFELEELD 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 767916292 441 GPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPF 489
Cdd:cd00769 150 ADLFHPGRSAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
123-486 |
4.37e-50 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 183.06 E-value: 4.37e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 123 VIYDSNGVVlSMPPIINGDHSRITVNTRNIFIEC----------T----------------GTDFTKAKIVLDIIVTMFS 176
Cdd:COG0072 303 VIADDEGPL-ALAGVMGGEDSEVTEETTDVLLESayfdpvsirrTarrlglhsdasyrferGVDPALTVAALERATQLIL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 177 EYCENQFTVEAAEVVfpngkshtfPELAYRKE-MVRADLINKKVGIRETPENLAKLLTRmyLKSEVIGDGNQIEIEIPPT 255
Cdd:COG0072 382 EIAGGEVGPGIVDVY---------PEPPEPKTiTLRLARINRLLGVEIPAEEIEEILER--LGFEVEEDGDGLTVTVPSW 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 256 RADIIHACDIVEDaaIA--YGYNNIQMTLPK-TYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDiADKLGVDi 332
Cdd:COG0072 451 RFDIEIEADLIEE--VAriYGYDNIPSTLPRaPLAGGGLTEAQRLRRRVRRALAARGYQEVITYSFVSPED-ADLFGLR- 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 333 saTKAVHISNPKTAEFQVARTTLLPGLLKTIAAN--RKMPlPLKLFEISDIVIKDSNTDvgAKNYRHLCAVYY-NKNPG- 408
Cdd:COG0072 527 --REAVRLANPISEDLSVMRTSLLPGLLEAAAYNlnRGQK-DVRLFEIGRVFLPDEGEE--PREPLHLAGVLTgNREPEs 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 409 ----------FEIIhGLLDRIMQLLDVPpgedkgGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMP 478
Cdd:COG0072 602 wggkarpvdfFDLK-GDVEALLAALGVP------KLEFEAAEHPALHPGRSAEILLGGKVIGFIGELHPKVLKALDLPGP 674
|
....*...
gi 767916292 479 CSSLEINV 486
Cdd:COG0072 675 VYVFELDL 682
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
19-180 |
4.91e-31 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 117.75 E-value: 4.91e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 19 RPFAVAAVLRNIKFTkdrYDSFIELQEKLHQNICRKRaLVAIGTHDLDTLSGPFTYTAKRPSDIKFK--PLNKTKEYTAC 96
Cdd:smart00873 1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRPI-NNVVDITNYVSLETGQPLHAFDLDKIKGKdiPLRRAKEGEKF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 97 ELMNiyKTDNHLKHYLHIIENKPLYPVIYDSNGV----------VLSMPPIINGDHS-RITVNTRNIFIECT-----GTD 160
Cdd:smart00873 77 ETLD--GKEYELDEGDLVIADDEGPLALAGVMGGeesevtenttVIFLEPAIFSPRTiRITARTLNLFTDASgrferGVD 154
|
170 180
....*....|....*....|
gi 767916292 161 FTKAKIVLDIIVTMFSEYCE 180
Cdd:smart00873 155 PELVELALDRAAALLLEICG 174
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02265 |
PLN02265 |
probable phenylalanyl-tRNA synthetase beta chain |
1-490 |
0e+00 |
|
probable phenylalanyl-tRNA synthetase beta chain
Pssm-ID: 215149 [Multi-domain] Cd Length: 597 Bit Score: 733.79 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 1 MPDGKIQKLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPS 80
Cdd:PLN02265 105 ISKGSILKMHVKPETSLIRPFVVCAVLRGVTFDEARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALPPE 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 81 DIKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTD 160
Cdd:PLN02265 185 DINFVPLKQTKSFRADELMEFYKSDMKLKKFLHIIENSPVFPVIYDSNRTVLSLPPIINGAHSAITLDTKNVFIECTATD 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 161 FTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSE 240
Cdd:PLN02265 265 LTKAKIVLNTMVTMFSEYCARKFEVEPVEVVYPDGKSTVYPDLSVRTMEVDLSYINSSIGVSLDAEEVASLLNKMQLQAE 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 241 VIG-DGNQIEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALC 319
Cdd:PLN02265 345 QSSdDGCTIRVSVPPTRSDILHPCDVAEDVAIAYGYNNIPKRKPKSMTVGKQQPLNQFSDLLRAEVAMAGFTEVLTWILC 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 320 SQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLC 399
Cdd:PLN02265 425 SHKENFAMLNREDDGNSAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPIKLFEVSDVVLLDESKDVGARNSRRLA 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 400 AVYYNKNPGFEIIHGLLDRIMQLLDVPPGE--DKGGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTM 477
Cdd:PLN02265 505 ALYCGTTSGFEVIHGLVDRIMEVLGIPFVEigDNNGYYVEPSNEPEYFPGRQASIIYKGKHVGTFGIVHPEVLNNFDIPD 584
|
490
....*....|...
gi 767916292 478 PCSSLEINVGPFL 490
Cdd:PLN02265 585 PCSFLELDLEPLL 597
|
|
| pheT_arch |
TIGR00471 |
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA ... |
8-490 |
3.50e-153 |
|
phenylalanyl-tRNA synthetase, beta subunit; Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273096 [Multi-domain] Cd Length: 551 Bit Score: 447.66 E-value: 3.50e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 8 KLIITEETAKIRPFAVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSDIKFKPL 87
Cdd:TIGR00471 86 KLTVDESVLQIRPFITGAVVKGIILNDKVLESLIELQEKLHWNIGRNRRKVAIGIHDLDKVEFPFHYKAVSPNGIKFVPL 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 88 NKTKEYTACELMNIYKTDnhlKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECTGTDFTKAKIV 167
Cdd:TIGR00471 166 NSDQEMTPDEILEEHPKG---IRYAHIIEDSDKFPLILDSKDDVLSMPPIINSELTKLTVNTRNLLIDVTGTDKTAVEIT 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 168 LDIIVTMFSEYCENQFTVEaaEVVFPNGKSHtFPELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVigDGNQ 247
Cdd:TIGR00471 243 LNIACTMFADRGDGRITVV--EVERPDEHLG-QPNLAPRFMEVSVEYINSLLGLNLSADEIAHSLKKMRLDAVQ--SDEK 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 248 IEIEIPPTRADIIHACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDIADK 327
Cdd:TIGR00471 318 LKVVIPAYRVDILHEVDIIEDVAIGYGYNNFPPELPLINTIGRLKPLNKVSDIIREIMVGLGFQEVIPLTLTSEEVNFKR 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 328 LgvDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKNP 407
Cdd:TIGR00471 398 M--RIEDNNDVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITHSEA 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 408 GFEIIHGLLDRIMQLLDVppgedkgGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVG 487
Cdd:TIGR00471 476 NFNEIKSIVAALARELGI-------EYEIEESEHPSFIPGRGAKIVFEGKAIGHFGEIHPEVLTNFELEFPVSAFEVNIE 548
|
...
gi 767916292 488 PFL 490
Cdd:TIGR00471 549 VFL 551
|
|
| tRNA_synthFbeta |
pfam17759 |
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic ... |
278-486 |
2.39e-62 |
|
Phenylalanyl tRNA synthetase beta chain CLM domain; This domain corresponds to the catalytic like domain (CLM) in the beta chain of phe tRNA synthetase.
Pssm-ID: 465487 [Multi-domain] Cd Length: 214 Bit Score: 202.40 E-value: 2.39e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 278 IQMTLPKTYTIANQ-FPLNKLTELLRHDMAAAGFTEALTFALCSQEDiADKLGVDISATKAVHISNPKTAEFQVARTTLL 356
Cdd:pfam17759 1 IPSTLPKGPTTGGGlTPEQKLRRRVRDLLAAAGFTEVITYSFTSPKD-LDKLLEDDPRRKAVKLANPLSEELSVMRTSLL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 357 PGLLKTIAANRKMPLP-LKLFEISDIVIKDSnTDVGAKNYRHLCAVYYNK-----------NPGFEIIHGLLDRIMQLLD 424
Cdd:pfam17759 80 PGLLETLAYNLNRGNPdVRLFEIGRVFLPDE-LEELPREPRRLAGLLTGKrlpeswqgkarPVDFYDLKGIVEALLAALG 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767916292 425 VppgedkGGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINV 486
Cdd:pfam17759 159 I------DDYEFEAADHPALHPGRSAEILVGGKVIGFIGELHPEVAKNFDLPQPVYVFELDL 214
|
|
| PheRS_beta_core |
cd00769 |
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II ... |
293-489 |
3.92e-53 |
|
Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Pssm-ID: 238392 [Multi-domain] Cd Length: 198 Bit Score: 177.84 E-value: 3.92e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 293 PLNKLTELLRHDMAAAGFTEALTFALCSQEDiADKLGVDisATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMP-L 371
Cdd:cd00769 1 PLQKLERKLRRLLAGLGFQEVITYSLTSPEE-AELFDGG--LDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKnK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 372 PLKLFEISDIVIKDSNtdvGAKNYRHLCAVYYNK-----------NPGFEIIHGLLDRIMQLLdvppgEDKGGYVIKASE 440
Cdd:cd00769 78 PLRLFEIGRVFLKDED---GPEEEEHLAALLSGNrepeswqgkgrPVDFYDAKGILEALLRAL-----GIIVEFELEELD 149
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 767916292 441 GPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPF 489
Cdd:cd00769 150 ADLFHPGRSAKIYVNGEVIGFIGELHPEVLKEFDLKEPVYAFELDLDAL 198
|
|
| PheT |
COG0072 |
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; ... |
123-486 |
4.37e-50 |
|
Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]; Phenylalanyl-tRNA synthetase beta subunit is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439842 [Multi-domain] Cd Length: 793 Bit Score: 183.06 E-value: 4.37e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 123 VIYDSNGVVlSMPPIINGDHSRITVNTRNIFIEC----------T----------------GTDFTKAKIVLDIIVTMFS 176
Cdd:COG0072 303 VIADDEGPL-ALAGVMGGEDSEVTEETTDVLLESayfdpvsirrTarrlglhsdasyrferGVDPALTVAALERATQLIL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 177 EYCENQFTVEAAEVVfpngkshtfPELAYRKE-MVRADLINKKVGIRETPENLAKLLTRmyLKSEVIGDGNQIEIEIPPT 255
Cdd:COG0072 382 EIAGGEVGPGIVDVY---------PEPPEPKTiTLRLARINRLLGVEIPAEEIEEILER--LGFEVEEDGDGLTVTVPSW 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 256 RADIIHACDIVEDaaIA--YGYNNIQMTLPK-TYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDiADKLGVDi 332
Cdd:COG0072 451 RFDIEIEADLIEE--VAriYGYDNIPSTLPRaPLAGGGLTEAQRLRRRVRRALAARGYQEVITYSFVSPED-ADLFGLR- 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 333 saTKAVHISNPKTAEFQVARTTLLPGLLKTIAAN--RKMPlPLKLFEISDIVIKDSNTDvgAKNYRHLCAVYY-NKNPG- 408
Cdd:COG0072 527 --REAVRLANPISEDLSVMRTSLLPGLLEAAAYNlnRGQK-DVRLFEIGRVFLPDEGEE--PREPLHLAGVLTgNREPEs 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 409 ----------FEIIhGLLDRIMQLLDVPpgedkgGYVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMP 478
Cdd:COG0072 602 wggkarpvdfFDLK-GDVEALLAALGVP------KLEFEAAEHPALHPGRSAEILLGGKVIGFIGELHPKVLKALDLPGP 674
|
....*...
gi 767916292 479 CSSLEINV 486
Cdd:COG0072 675 VYVFELDL 682
|
|
| pheT |
PRK00629 |
phenylalanyl-tRNA synthetase subunit beta; Reviewed |
123-486 |
6.03e-47 |
|
phenylalanyl-tRNA synthetase subunit beta; Reviewed
Pssm-ID: 234804 [Multi-domain] Cd Length: 791 Bit Score: 173.82 E-value: 6.03e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 123 VIYDSNGVVlSMPPIINGDHSRITVNTRNIFIEC------------------T--------GTDFTKAKIVLDIIVTMFS 176
Cdd:PRK00629 302 VIADDKKPL-ALAGVMGGEDSEVTENTTNVLLESayfdpvsirktarrlglrTdasyrferGVDPALTLLALERATALIL 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 177 EYCENQfTVEAAEVVFPNGKSHTFPelayrkemVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGnQIEIEIPPTR 256
Cdd:PRK00629 381 ELGGGE-VVEGVVDVYPLPKEPTIT--------LRLERINRLLGTEISDEEIVDILKRLGFEVTEVDGD-GLTVTVPSWR 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 257 ADIIHACDIVEDaaIA--YGYNNIQMTLPK-TYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQEDiADKLGVDis 333
Cdd:PRK00629 451 FDIEIEEDLVEE--VAriYGYDNIPSTPPVaALTMGGLTEAQRLLRRLRRALAALGYQEVITYSFVSPED-AKLFGLN-- 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 334 aTKAVHISNPKTAEFQVARTTLLPGLLKTIAAN--RKMPLpLKLFEISDIVIKDsntDVGAKNYRHLCAVYYNKNPG--- 408
Cdd:PRK00629 526 -PEPLLLLNPISEELSVMRTSLLPGLLEAVAYNlnRGNKD-VALFEIGRVFLPD---GDLPREPEHLAGVLTGNRVEesw 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 409 --------FEIIhGLLDRIMQLLDVPPGEdkggyVIKASEGPAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCS 480
Cdd:PRK00629 601 ggkrpvdfFDLK-GDVEALLEALGLPEVE-----FVAEFEAAALHPGRSAEIYLDGKVIGFIGELHPKVLKKLDLPGRTY 674
|
....*.
gi 767916292 481 SLEINV 486
Cdd:PRK00629 675 VFELDL 680
|
|
| B3_4 |
smart00873 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
19-180 |
4.91e-31 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 214876 [Multi-domain] Cd Length: 174 Bit Score: 117.75 E-value: 4.91e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 19 RPFAVAAVLRNIKFTkdrYDSFIELQEKLHQNICRKRaLVAIGTHDLDTLSGPFTYTAKRPSDIKFK--PLNKTKEYTAC 96
Cdd:smart00873 1 CPRYLGRVIRGVKNT---RPSPEWLQERLHRAGIRPI-NNVVDITNYVSLETGQPLHAFDLDKIKGKdiPLRRAKEGEKF 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 97 ELMNiyKTDNHLKHYLHIIENKPLYPVIYDSNGV----------VLSMPPIINGDHS-RITVNTRNIFIECT-----GTD 160
Cdd:smart00873 77 ETLD--GKEYELDEGDLVIADDEGPLALAGVMGGeesevtenttVIFLEPAIFSPRTiRITARTLNLFTDASgrferGVD 154
|
170 180
....*....|....*....|
gi 767916292 161 FTKAKIVLDIIVTMFSEYCE 180
Cdd:smart00873 155 PELVELALDRAAALLLEICG 174
|
|
| B3_4 |
pfam03483 |
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA ... |
18-179 |
4.27e-19 |
|
B3/4 domain; This domain is found in tRNA synthetase beta subunits as well as in some non tRNA synthetase proteins.
Pssm-ID: 427327 [Multi-domain] Cd Length: 174 Bit Score: 84.52 E-value: 4.27e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 18 IRPFAVAAVLRNIKFTKDrydSFIELQEKLHQniCRKR---ALV------------AIGTHDLDTLSGPFTytakrpsdi 82
Cdd:pfam03483 1 ACPRYFGRVIRGVKKNRP---SPEWLQRRLRR--AGIRpinNVVditnyvmlelgqPLHAFDLDKIAGDIV--------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 83 kfKPLNKTKEytacELMNIYKTDNHLKhylhiienkPLYPVIYDSNGVVlSMPPIINGDHSRITVNTRNIFIECT----- 157
Cdd:pfam03483 67 --VRLAKGGE----KFTTLDGKERELD---------PGDLVIADDDGPV-ALAGIMGGEESEVTEDTTNIFLESAgfdpv 130
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 767916292 158 ---------------------GTDFTKAKIVLDIIVTMFSEYC 179
Cdd:pfam03483 131 airktarrlglrtdasyrferGVDPELVEAALDRATALLLELC 173
|
|
| B5 |
pfam03484 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
210-275 |
1.45e-17 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 460942 [Multi-domain] Cd Length: 67 Bit Score: 76.66 E-value: 1.45e-17
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767916292 210 VRADLINKKVGIRETPENLAKLLTRMYLKSEVIgDGNQIEIEIPPTRADIIHACDIVEDAAIAYGY 275
Cdd:pfam03484 3 LRLDRINRLLGIDLSAEEIVEILERLGFEVEEE-DGDTLTVTVPSYRPDILHEADLIEEVARIYGY 67
|
|
| B5 |
smart00874 |
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits. |
206-275 |
4.63e-17 |
|
tRNA synthetase B5 domain; This domain is found in phenylalanine-tRNA synthetase beta subunits.
Pssm-ID: 197942 [Multi-domain] Cd Length: 68 Bit Score: 75.22 E-value: 4.63e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 206 RKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGnqIEIEIPPTRADIIHACDIVEDAAIAYGY 275
Cdd:smart00874 1 RTITLRLERINRLLGLEILAEEIEEILKRLGFEVEVSGDT--LEVTVPSYRFDILIEADLIEEVARIYGY 68
|
|
| syfB |
CHL00192 |
phenylalanyl-tRNA synthetase beta chain; Provisional |
109-488 |
1.01e-11 |
|
phenylalanyl-tRNA synthetase beta chain; Provisional
Pssm-ID: 214391 [Multi-domain] Cd Length: 704 Bit Score: 67.42 E-value: 1.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 109 KHYLHIIENKPLYP---VIYDS--------------NGVVLSMPPIINGDHSRITVNTRNIFIEctGTDFTKAKI----- 166
Cdd:CHL00192 171 TSSLALSSKFALQKssfIASNSknielennilvvqaNNVIISIAGIISNEEIICDKNTKSILIE--ASIFDAAVIrkssr 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 167 VLDIiVTMFSEYCENQFTVEAAEVVF-----------PNGKSHTFPELAYRKEMVRADLINKK-------------VGIR 222
Cdd:CHL00192 249 KLGL-RTDRSIRYEKSLKNDNLLEAYyrlvsllrilnPKLKCKFHFIYKKIKNSSRRIKLSYKkikdilgpikintNTRY 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 223 ETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRA-DIIHACDIVEDAAIAYGYNNIQMTLPKTYTIAN-----QFpLNK 296
Cdd:CHL00192 328 LSPKEITNALKRLNFKITYDSLKLNWEVLIPSYRKdDIVREIDVIEEIARIYGFNNFLSKLPNIKFIGRldidyNT-RDK 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 297 LTELLRHdmaaAGFTEALTFALCSQEDIADklgvdisatKAVHISNPKTAEFQVARTTLLPGLLKTIAAN-RKMPLPLKL 375
Cdd:CHL00192 407 IRSYLRN----LGLTELIHYSLVKQESFSK---------NEIKLKNPLIKDYSTLRSSLLPGLIEAVQENlKQGNSTLEG 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 376 FEISDIVIKDSNTDVGAKNYRHLCA-------VYYNKNPGFEIIH--GLLDRIMQLLDVPpgedkggYVIKAS----EGP 442
Cdd:CHL00192 474 FEIGHVFNLDSSSIIEETELAGGIFggidirsSWSEKAQSLNWFEakGIIENFFQKLNLP-------IYWKKYsdldEKI 546
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 767916292 443 AFFPGRCAEIF-ARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGP 488
Cdd:CHL00192 547 NFHPYCTSEIFlSNGQKIGIFGQLHPLLANKLNLNTEIYLFEINLDI 593
|
|
| B3/B4 |
COG3382 |
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only] ... |
55-184 |
1.69e-07 |
|
B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only];
Pssm-ID: 442609 [Multi-domain] Cd Length: 233 Bit Score: 52.16 E-value: 1.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916292 55 RALVAIGTHDLDTLSGPFTYTAKRPSDIkFKPLNKTKEytacelmniyktdnhlkhyLHIIENKPLYpviYDSNGVVLSM 134
Cdd:COG3382 111 RYLLPIGGYDLDKIEGDLRLRLARGGES-FLPIGGDEE-------------------EPPEPGEVVY---ADDEGVFCRR 167
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 767916292 135 PPIINGDHSRITVNTRNIF--IEC-TGTDFTKAKIVLDIIVTMFSEYCENQFT 184
Cdd:COG3382 168 WPWRDSERTKVTEETKNALfiIEGlPGVSAEDLEAALDELAELLERYLGGEVV 220
|
|
| |
