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Conserved domains on  [gi|755509482|ref|XP_011248532|]
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protein THEMIS2 isoform X1 [Mus musculus]

Protein Classification

CABIT domain-containing protein( domain architecture ID 11976890)

CABIT domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CABIT pfam12736
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
165-422 2.84e-28

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


:

Pssm-ID: 463686  Cd Length: 261  Bit Score: 113.69  E-value: 2.84e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482  165 ILEVPEGPPVflSPWVSFLRKGQRLCIYGPASPSwRVVASSKSRK---VPRYFMLSGAYQGKLKRRPRE--FSTAYDLLG 239
Cdd:pfam12736   4 VVKVTSGIYG--EGSVYCLSKGDVLLIHGLKQAK-KVVAQEVEEGrgvVGPKLLIPLSYPGLFKLLADEgpFESVEELAR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482  240 AlqpgRPLRVVATKD---------CDGNEEENPDFSFLAVGDRLEVLRSGQVCGTKGQD-----IDVLVCQRlseqsgee 305
Cdd:pfam12736  81 S----FPIRVLAKEEgpdsvgvpmFRSSDDMSLANFTLQAGEELTLLGVEESSGGKEELasvtvGDYLICLV-------- 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482  306 eedleeiedeAEDKEQILLPLYLSGSFVEEVNDSRRYNLVDLTAQYSLPCEVKVVTKDTRHPtDPLASFPGLRLEEKLTE 385
Cdd:pfam12736 149 ----------NQTGESVLLPLSCRGRFSEECEDEGEYTLREIVEKFKLPLNVKVVVGDPPRG-DLDAFTGELRLEPVYEE 217
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 755509482  386 PFLVVSLDSQPE----MCFEIpPRWLDLTVVEAEGQPAQVA 422
Cdd:pfam12736 218 QAVVASPLLIPVpfrkLEVPI-PSDLDVEVAEVTSADNKDY 257
CABIT super family cl28785
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
12-135 5.38e-04

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


The actual alignment was detected with superfamily member pfam12736:

Pssm-ID: 463686  Cd Length: 261  Bit Score: 42.05  E-value: 5.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482   12 FKSTQRIVTKASVVPEDQPLRLEAVEIHHGI----------RYARCVqVSKTKELLHLPLSQKGPFW-RCKPSAPQTLHQ 80
Cdd:pfam12736 101 FRSSDDMSLANFTLQAGEELTLLGVEESSGGkeelasvtvgDYLICL-VNQTGESVLLPLSCRGRFSeECEDEGEYTLRE 179
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755509482   81 ILQDPAL-KDLTLSCPSLPWNS-------VILKPQYMLQAIMHM--------RSSIVKIPSTLEVEVEDVT 135
Cdd:pfam12736 180 IVEKFKLpLNVKVVVGDPPRGDldaftgeLRLEPVYEEQAVVASpllipvpfRKLEVPIPSDLDVEVAEVT 250
 
Name Accession Description Interval E-value
CABIT pfam12736
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
165-422 2.84e-28

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


Pssm-ID: 463686  Cd Length: 261  Bit Score: 113.69  E-value: 2.84e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482  165 ILEVPEGPPVflSPWVSFLRKGQRLCIYGPASPSwRVVASSKSRK---VPRYFMLSGAYQGKLKRRPRE--FSTAYDLLG 239
Cdd:pfam12736   4 VVKVTSGIYG--EGSVYCLSKGDVLLIHGLKQAK-KVVAQEVEEGrgvVGPKLLIPLSYPGLFKLLADEgpFESVEELAR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482  240 AlqpgRPLRVVATKD---------CDGNEEENPDFSFLAVGDRLEVLRSGQVCGTKGQD-----IDVLVCQRlseqsgee 305
Cdd:pfam12736  81 S----FPIRVLAKEEgpdsvgvpmFRSSDDMSLANFTLQAGEELTLLGVEESSGGKEELasvtvGDYLICLV-------- 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482  306 eedleeiedeAEDKEQILLPLYLSGSFVEEVNDSRRYNLVDLTAQYSLPCEVKVVTKDTRHPtDPLASFPGLRLEEKLTE 385
Cdd:pfam12736 149 ----------NQTGESVLLPLSCRGRFSEECEDEGEYTLREIVEKFKLPLNVKVVVGDPPRG-DLDAFTGELRLEPVYEE 217
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 755509482  386 PFLVVSLDSQPE----MCFEIpPRWLDLTVVEAEGQPAQVA 422
Cdd:pfam12736 218 QAVVASPLLIPVpfrkLEVPI-PSDLDVEVAEVTSADNKDY 257
CABIT pfam12736
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
12-135 5.38e-04

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


Pssm-ID: 463686  Cd Length: 261  Bit Score: 42.05  E-value: 5.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482   12 FKSTQRIVTKASVVPEDQPLRLEAVEIHHGI----------RYARCVqVSKTKELLHLPLSQKGPFW-RCKPSAPQTLHQ 80
Cdd:pfam12736 101 FRSSDDMSLANFTLQAGEELTLLGVEESSGGkeelasvtvgDYLICL-VNQTGESVLLPLSCRGRFSeECEDEGEYTLRE 179
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755509482   81 ILQDPAL-KDLTLSCPSLPWNS-------VILKPQYMLQAIMHM--------RSSIVKIPSTLEVEVEDVT 135
Cdd:pfam12736 180 IVEKFKLpLNVKVVVGDPPRGDldaftgeLRLEPVYEEQAVVASpllipvpfRKLEVPIPSDLDVEVAEVT 250
 
Name Accession Description Interval E-value
CABIT pfam12736
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
165-422 2.84e-28

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


Pssm-ID: 463686  Cd Length: 261  Bit Score: 113.69  E-value: 2.84e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482  165 ILEVPEGPPVflSPWVSFLRKGQRLCIYGPASPSwRVVASSKSRK---VPRYFMLSGAYQGKLKRRPRE--FSTAYDLLG 239
Cdd:pfam12736   4 VVKVTSGIYG--EGSVYCLSKGDVLLIHGLKQAK-KVVAQEVEEGrgvVGPKLLIPLSYPGLFKLLADEgpFESVEELAR 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482  240 AlqpgRPLRVVATKD---------CDGNEEENPDFSFLAVGDRLEVLRSGQVCGTKGQD-----IDVLVCQRlseqsgee 305
Cdd:pfam12736  81 S----FPIRVLAKEEgpdsvgvpmFRSSDDMSLANFTLQAGEELTLLGVEESSGGKEELasvtvGDYLICLV-------- 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482  306 eedleeiedeAEDKEQILLPLYLSGSFVEEVNDSRRYNLVDLTAQYSLPCEVKVVTKDTRHPtDPLASFPGLRLEEKLTE 385
Cdd:pfam12736 149 ----------NQTGESVLLPLSCRGRFSEECEDEGEYTLREIVEKFKLPLNVKVVVGDPPRG-DLDAFTGELRLEPVYEE 217
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 755509482  386 PFLVVSLDSQPE----MCFEIpPRWLDLTVVEAEGQPAQVA 422
Cdd:pfam12736 218 QAVVASPLLIPVpfrkLEVPI-PSDLDVEVAEVTSADNKDY 257
CABIT pfam12736
Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- ...
12-135 5.38e-04

Cell-cycle sustaining, positive selection,; The 'CABIT' domain (for 'cysteine-containing, all- in Themis') is found in a newly identified gene family that has three mammalian homologs (Themis, Icb1 and 9130404H23Rik) that encode proteins with two CABIT domains and a highly conserved proline-rich region. In contrast, Fam59A, Fam59B and related proteins from mammals to cnidarians, including the insect Serrano proteins, have a single copy of the CABIT domain, a proline-rich region and often a C-terminal SAM (sterile-motif) domain. Multiple-sequence alignment has predicted that the CABIT domain adopts an all-strand structure with at least 12 strands, ie a dyad of six-stranded beta-barrel units. The CABIT domain contains a nearly absolutely conserved cysteine residue which is likely to be central to its function. CABIT domain proteins function downstream of tyrosine kinase signalling and interact with GRB2.


Pssm-ID: 463686  Cd Length: 261  Bit Score: 42.05  E-value: 5.38e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755509482   12 FKSTQRIVTKASVVPEDQPLRLEAVEIHHGI----------RYARCVqVSKTKELLHLPLSQKGPFW-RCKPSAPQTLHQ 80
Cdd:pfam12736 101 FRSSDDMSLANFTLQAGEELTLLGVEESSGGkeelasvtvgDYLICL-VNQTGESVLLPLSCRGRFSeECEDEGEYTLRE 179
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755509482   81 ILQDPAL-KDLTLSCPSLPWNS-------VILKPQYMLQAIMHM--------RSSIVKIPSTLEVEVEDVT 135
Cdd:pfam12736 180 IVEKFKLpLNVKVVVGDPPRGDldaftgeLRLEPVYEEQAVVASpllipvpfRKLEVPIPSDLDVEVAEVT 250
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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