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Conserved domains on  [gi|755539837|ref|XP_011247583|]
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CHD1 helical C-terminal domain containing protein 1 isoform X6 [Mus musculus]

Protein Classification

DUF4208 domain-containing protein( domain architecture ID 10621412)

DUF4208 domain-containing protein similar to C-terminal domain of Homo sapiens chromodomain-helicase-dna-binding Protein 1 (CHD1), an ATP-dependent chromatin remodelling protein that has an ability to assemble and organize nucleosomes both in vitro and in vivo

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4208 pfam13907
Domain of unknown function (DUF4208); This domain is found at the C-terminus of ...
 45-126 4.33e-18

Domain of unknown function (DUF4208); This domain is found at the C-terminus of chromodomain-helicase-DNA-binding proteins. The exact function of the domain is undetermined.


:

Pssm-ID: 464035  Cd Length: 93  Bit Score: 76.52  E-value: 4.33e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755539837   45 QCKEYLRPLKKFLRKL-NLPKDLPQKKRIKYTKQSLEALGGHINTFLQHYcRAWEIKHWKKMLWRFVSLFSELE--AKQL 121
Cdd:pfam13907  10 ECKELMRPVKKSLKRLkKGTKGLSRKERAKILKKELLKIGDFIDSLLEET-KKEKKEKLRKHLWSFVSKFWPNKvsGKKL 88


                  ....*
gi 755539837  122 RRLYK 126
Cdd:pfam13907  89 KEMYK 93
 
Name Accession Description Interval E-value
DUF4208 pfam13907
Domain of unknown function (DUF4208); This domain is found at the C-terminus of ...
 45-126 4.33e-18

Domain of unknown function (DUF4208); This domain is found at the C-terminus of chromodomain-helicase-DNA-binding proteins. The exact function of the domain is undetermined.


Pssm-ID: 464035  Cd Length: 93  Bit Score: 76.52  E-value: 4.33e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755539837   45 QCKEYLRPLKKFLRKL-NLPKDLPQKKRIKYTKQSLEALGGHINTFLQHYcRAWEIKHWKKMLWRFVSLFSELE--AKQL 121
Cdd:pfam13907  10 ECKELMRPVKKSLKRLkKGTKGLSRKERAKILKKELLKIGDFIDSLLEET-KKEKKEKLRKHLWSFVSKFWPNKvsGKKL 88


                  ....*
gi 755539837  122 RRLYK 126
Cdd:pfam13907  89 KEMYK 93
 
Name Accession Description Interval E-value
DUF4208 pfam13907
Domain of unknown function (DUF4208); This domain is found at the C-terminus of ...
 45-126 4.33e-18

Domain of unknown function (DUF4208); This domain is found at the C-terminus of chromodomain-helicase-DNA-binding proteins. The exact function of the domain is undetermined.


Pssm-ID: 464035  Cd Length: 93  Bit Score: 76.52  E-value: 4.33e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755539837   45 QCKEYLRPLKKFLRKL-NLPKDLPQKKRIKYTKQSLEALGGHINTFLQHYcRAWEIKHWKKMLWRFVSLFSELE--AKQL 121
Cdd:pfam13907  10 ECKELMRPVKKSLKRLkKGTKGLSRKERAKILKKELLKIGDFIDSLLEET-KKEKKEKLRKHLWSFVSKFWPNKvsGKKL 88


                  ....*
gi 755539837  122 RRLYK 126
Cdd:pfam13907  89 KEMYK 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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