NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|755503746|ref|XP_011238397|]
View 

uncharacterized protein C1orf54 homolog isoform X1 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4634 super family cl21282
Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins ...
 1-120 2.91e-45

Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins in this family are typically between 98 and 133 amino acids in length.


The actual alignment was detected with superfamily member pfam15465:

Pssm-ID: 434736  Cd Length: 131  Bit Score: 146.94  E-value: 2.91e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755503746    1 MDVLFIALLVAPLILGQEYDHEEQLEEGDYYQVAYYYyTVTPNYDDFSVNFTVDYSVFESEDRLNRLNKevttTEAVETT 80
Cdd:pfam15465   1 MDVLFVAILAVPLILGQEYEDEEGLEEDDYYQVAYYY-TVTPNYDDFGVNFTIDYSMFESEDRLNRLDK----EVTTEAV 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 755503746   81 ASSYSLHTELMDPQNPVTTKPVTTEPvtTEPVTTEPVSQM 120
Cdd:pfam15465  76 ETTISLETERADHQKPVTVKPVTMEP--QSPDLNDAVSSL 113
 
Name Accession Description Interval E-value
DUF4634 pfam15465
Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins ...
 1-120 2.91e-45

Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins in this family are typically between 98 and 133 amino acids in length.


Pssm-ID: 434736  Cd Length: 131  Bit Score: 146.94  E-value: 2.91e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755503746    1 MDVLFIALLVAPLILGQEYDHEEQLEEGDYYQVAYYYyTVTPNYDDFSVNFTVDYSVFESEDRLNRLNKevttTEAVETT 80
Cdd:pfam15465   1 MDVLFVAILAVPLILGQEYEDEEGLEEDDYYQVAYYY-TVTPNYDDFGVNFTIDYSMFESEDRLNRLDK----EVTTEAV 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 755503746   81 ASSYSLHTELMDPQNPVTTKPVTTEPvtTEPVTTEPVSQM 120
Cdd:pfam15465  76 ETTISLETERADHQKPVTVKPVTMEP--QSPDLNDAVSSL 113
 
Name Accession Description Interval E-value
DUF4634 pfam15465
Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins ...
 1-120 2.91e-45

Domain of unknown function (DUF4634); This family of proteins is found in eukaryotes. Proteins in this family are typically between 98 and 133 amino acids in length.


Pssm-ID: 434736  Cd Length: 131  Bit Score: 146.94  E-value: 2.91e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755503746    1 MDVLFIALLVAPLILGQEYDHEEQLEEGDYYQVAYYYyTVTPNYDDFSVNFTVDYSVFESEDRLNRLNKevttTEAVETT 80
Cdd:pfam15465   1 MDVLFVAILAVPLILGQEYEDEEGLEEDDYYQVAYYY-TVTPNYDDFGVNFTIDYSMFESEDRLNRLDK----EVTTEAV 75

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 755503746   81 ASSYSLHTELMDPQNPVTTKPVTTEPvtTEPVTTEPVSQM 120
Cdd:pfam15465  76 ETTISLETERADHQKPVTVKPVTMEP--QSPDLNDAVSSL 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH