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Conserved domains on  [gi|704523270|ref|XP_010083897|]
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PREDICTED: retinitis pigmentosa 1-like 1 protein [Pterocles gutturalis]

Protein Classification

ubiquitin family protein( domain architecture ID 13019529)

ubiquitin family protein belongs to an diverse class of protein modifier and gene expression regulatory proteins that participate in a number of cellular processes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DCX1_RP1L1 cd17146
Doublecortin-like domain 1 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a ...
 37-115 1.84e-54

Doublecortin-like domain 1 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a member of the doublecortin (DCX) family. Its DCX domains occur in double tandem repeats. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The DCX-domain of RP1L1 localizes to the photoreceptor and is genetically associated with retinitis pigmentosa.


:

Pssm-ID: 340666  Cd Length: 79  Bit Score: 183.88  E-value: 1.84e-54
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 704523270   37 KKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCSDKKYVKP 115
Cdd:cd17146     1 KKITFYKSGDPQFGGVKMAVNKRTFKSFSALLDDLSQRVPLPFGVRTITTPRGTHSISRLEQLEDGGCYLCSDKKYVKP 79
DCX2_RP1L1 cd17148
Dublecortin-like domain 2 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a ...
 162-237 1.14e-45

Dublecortin-like domain 2 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a member of doublecortin (DCX) family. Its protein domains occur in tandem repeats. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The DCX-domain of RP1L1 localizes to the photoreceptor and is genetically associated with retinitis pigmentosa.


:

Pssm-ID: 340668  Cd Length: 76  Bit Score: 158.78  E-value: 1.14e-45
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 704523270  162 KKITLVKNGESGFRRSIILNRRNARSFKTLLDEISEILQFPVKKLYTVDGKKIDSMQALLHCPSVLVCVGREPFKP 237
Cdd:cd17148     1 KKITLVKNGDPDVRRSIILNRRNARNLRTFLDEISDLLQFPVKKLYTLEGRKIDSIQALLHCPSVLVCVGREPFKP 76
2A1904 super family cl36772
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1181-1480 2.97e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


The actual alignment was detected with superfamily member TIGR00927:

Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 45.76  E-value: 2.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1181 EEASVSEAAQDMKKIPSSSVEEAAEnGNANENDEGELQpsgTEVEGNEEMETELNEVGSSlMNGDTEGAEIsgsqncete 1260
Cdd:TIGR00927  650 ERPTEAEGENGEESGGEAEQEGETE-TKGENESEGEIP---AERKGEQEGEGEIEAKEAD-HKGETEAEEV--------- 715

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1261 dkedeekseaEDEADNEAEEAEEPEDEDIGVDDEEERSECRGDAEGsGTDNNLEGDAAEGREEAEQHEAEAVEDAnpESE 1340
Cdd:TIGR00927  716 ----------EHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEG-KHEVETEGDRKETEHEGETEAEGKEDED--EGE 782

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1341 DETCPAEEEQNSEGGDKYDENDEEPTSDGPDkaheKHKGNNKVSEKALRAKGKKTNRRLETVNKAAAfscyssmgnfsQQ 1420
Cdd:TIGR00927  783 IQAGEDGEMKGDEGAEGKVEHEGETEAGEKD----EHEGQSETQADDTEVKDETGEQELNAENQGEA-----------KQ 847

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1421 SQKGSEDEGEEECKDDnnatnnqpngEVQSDESSKQPQMYPDSEEEEDKASSGSDPLGDE 1480
Cdd:TIGR00927  848 DEKGVDGGGGSDGGDS----------EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
 
Name Accession Description Interval E-value
DCX1_RP1L1 cd17146
Doublecortin-like domain 1 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a ...
 37-115 1.84e-54

Doublecortin-like domain 1 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a member of the doublecortin (DCX) family. Its DCX domains occur in double tandem repeats. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The DCX-domain of RP1L1 localizes to the photoreceptor and is genetically associated with retinitis pigmentosa.


Pssm-ID: 340666  Cd Length: 79  Bit Score: 183.88  E-value: 1.84e-54
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 704523270   37 KKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCSDKKYVKP 115
Cdd:cd17146     1 KKITFYKSGDPQFGGVKMAVNKRTFKSFSALLDDLSQRVPLPFGVRTITTPRGTHSISRLEQLEDGGCYLCSDKKYVKP 79
DCX2_RP1L1 cd17148
Dublecortin-like domain 2 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a ...
 162-237 1.14e-45

Dublecortin-like domain 2 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a member of doublecortin (DCX) family. Its protein domains occur in tandem repeats. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The DCX-domain of RP1L1 localizes to the photoreceptor and is genetically associated with retinitis pigmentosa.


Pssm-ID: 340668  Cd Length: 76  Bit Score: 158.78  E-value: 1.14e-45
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 704523270  162 KKITLVKNGESGFRRSIILNRRNARSFKTLLDEISEILQFPVKKLYTVDGKKIDSMQALLHCPSVLVCVGREPFKP 237
Cdd:cd17148     1 KKITLVKNGDPDVRRSIILNRRNARNLRTFLDEISDLLQFPVKKLYTLEGRKIDSIQALLHCPSVLVCVGREPFKP 76
DCX smart00537
Domain in the Doublecortin (DCX) gene product; Tandemly-repeated domain in doublin, the ...
 36-117 1.03e-22

Domain in the Doublecortin (DCX) gene product; Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.


Pssm-ID: 214711  Cd Length: 89  Bit Score: 93.48  E-value: 1.03e-22
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270     36 AKKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLS--HRVPLPFGVRTITTPRGIHcISELDQLEDGGCYLCSDKKYV 113
Cdd:smart00537    5 PKRIRFYRNGDRFFKGVRLVVNRKRFKSFEALLQDLTevVKLDLPHGVRKLYTLDGKK-VTSLDELEDGGSYVASGTEAF 83


                    ....
gi 704523270    114 KPIN 117
Cdd:smart00537   84 KKVD 87
DCX pfam03607
Doublecortin;
55-111 2.43e-16

Doublecortin;


Pssm-ID: 460986  Cd Length: 60  Bit Score: 74.41  E-value: 2.43e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 704523270    55 AINKRSFKSFNALMDDLSHRVP-LPFG-VRTITTPRGiHCISELDQLEDGGCYLCSDKK 111
Cdd:pfam03607    1 VVNKRRFRSFDALLDELTEKVVkLPFGaVRKLYTLDG-KRVTSLDELEDGGVYVAAGRE 58
DCX pfam03607
Doublecortin;
179-235 1.17e-14

Doublecortin;


Pssm-ID: 460986  Cd Length: 60  Bit Score: 69.78  E-value: 1.17e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 704523270   179 ILNRRNARSFKTLLDEISE---ILQFP-VKKLYTVDGKKIDSMQaLLHCPSVLVCVGREPF 235
Cdd:pfam03607    1 VVNKRRFRSFDALLDELTEkvvKLPFGaVRKLYTLDGKRVTSLD-ELEDGGVYVAAGREKF 60
DCX smart00537
Domain in the Doublecortin (DCX) gene product; Tandemly-repeated domain in doublin, the ...
 161-237 1.22e-12

Domain in the Doublecortin (DCX) gene product; Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.


Pssm-ID: 214711  Cd Length: 89  Bit Score: 64.97  E-value: 1.22e-12
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270    161 PKKITLVKNGESGFR-RSIILNRRNARSFKTLLDEISEI----LQFPVKKLYTVDGKKIDSMQALLHcPSVLVCVGREPF 235
Cdd:smart00537    5 PKRIRFYRNGDRFFKgVRLVVNRKRFKSFEALLQDLTEVvkldLPHGVRKLYTLDGKKVTSLDELED-GGSYVASGTEAF 83


                    ..
gi 704523270    236 KP 237
Cdd:smart00537   84 KK 85
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1181-1480 2.97e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 45.76  E-value: 2.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1181 EEASVSEAAQDMKKIPSSSVEEAAEnGNANENDEGELQpsgTEVEGNEEMETELNEVGSSlMNGDTEGAEIsgsqncete 1260
Cdd:TIGR00927  650 ERPTEAEGENGEESGGEAEQEGETE-TKGENESEGEIP---AERKGEQEGEGEIEAKEAD-HKGETEAEEV--------- 715

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1261 dkedeekseaEDEADNEAEEAEEPEDEDIGVDDEEERSECRGDAEGsGTDNNLEGDAAEGREEAEQHEAEAVEDAnpESE 1340
Cdd:TIGR00927  716 ----------EHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEG-KHEVETEGDRKETEHEGETEAEGKEDED--EGE 782

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1341 DETCPAEEEQNSEGGDKYDENDEEPTSDGPDkaheKHKGNNKVSEKALRAKGKKTNRRLETVNKAAAfscyssmgnfsQQ 1420
Cdd:TIGR00927  783 IQAGEDGEMKGDEGAEGKVEHEGETEAGEKD----EHEGQSETQADDTEVKDETGEQELNAENQGEA-----------KQ 847

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1421 SQKGSEDEGEEECKDDnnatnnqpngEVQSDESSKQPQMYPDSEEEEDKASSGSDPLGDE 1480
Cdd:TIGR00927  848 DEKGVDGGGGSDGGDS----------EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
PHA03169 PHA03169
hypothetical protein; Provisional
 1293-1494 3.06e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 41.88  E-value: 3.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270 1293 DEEERSEcrGDAEGSGTDNNLEGDAAEGreeaeQHEAEAVEDANPESEDETCPAEEEqnSEGGDKYDENDEEPTSDGPDK 1372
Cdd:PHA03169   83 EKEERGQ--GGPSGSGSESVGSPTPSPS-----GSAEELASGLSPENTSGSSPESPA--SHSPPPSPPSHPGPHEPAPPE 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270 1373 AHEKHKGNNKVSekalrakgkktnrrletvnkaaafscyssmgnFSQQSQKGSEDEGE---EECKDDNNATNNQPNGEVQ 1449
Cdd:PHA03169  154 SHNPSPNQQPSS--------------------------------FLQPSHEDSPEEPEpptSEPEPDSPGPPQSETPTSS 201

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 704523270 1450 SDESSKQPQMYPDSEEEEDKASSGSDPLGDEDQADAEGADPKETE 1494
Cdd:PHA03169  202 PPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
 
Name Accession Description Interval E-value
DCX1_RP1L1 cd17146
Doublecortin-like domain 1 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a ...
 37-115 1.84e-54

Doublecortin-like domain 1 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a member of the doublecortin (DCX) family. Its DCX domains occur in double tandem repeats. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The DCX-domain of RP1L1 localizes to the photoreceptor and is genetically associated with retinitis pigmentosa.


Pssm-ID: 340666  Cd Length: 79  Bit Score: 183.88  E-value: 1.84e-54
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 704523270   37 KKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCSDKKYVKP 115
Cdd:cd17146     1 KKITFYKSGDPQFGGVKMAVNKRTFKSFSALLDDLSQRVPLPFGVRTITTPRGTHSISRLEQLEDGGCYLCSDKKYVKP 79
DCX2_RP1L1 cd17148
Dublecortin-like domain 2 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a ...
 162-237 1.14e-45

Dublecortin-like domain 2 found in retinitis pigmentosa 1-like 1 (RP1L1) protein; RP1L1 is a member of doublecortin (DCX) family. Its protein domains occur in tandem repeats. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The DCX-domain of RP1L1 localizes to the photoreceptor and is genetically associated with retinitis pigmentosa.


Pssm-ID: 340668  Cd Length: 76  Bit Score: 158.78  E-value: 1.14e-45
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 704523270  162 KKITLVKNGESGFRRSIILNRRNARSFKTLLDEISEILQFPVKKLYTVDGKKIDSMQALLHCPSVLVCVGREPFKP 237
Cdd:cd17148     1 KKITLVKNGDPDVRRSIILNRRNARNLRTFLDEISDLLQFPVKKLYTLEGRKIDSIQALLHCPSVLVCVGREPFKP 76
DCX1_RP_like cd16110
Doublecortin-like domain 1 found in retinitis pigmentosa (RP)-like protein; RP-like protein ...
 37-111 5.22e-39

Doublecortin-like domain 1 found in retinitis pigmentosa (RP)-like protein; RP-like protein family is part of doublecortin (DCX) family. It has double tandem DCX repeats that are associated with retinitis pigmentosa. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. RP-like proteins are colocalized to the photoreceptor and share a function in outer segment disc morphogenesis.


Pssm-ID: 340527  Cd Length: 75  Bit Score: 139.74  E-value: 5.22e-39
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 704523270   37 KKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCSDKK 111
Cdd:cd16110     1 KNVTFYKDGDVHFSGVRVAINPRRYRTFDALLDELSRKVPLPFGVRSITTPRGRHSITSLEQLEDGGKYVCSSKR 75
DCX1_RP1 cd17145
Doublecortin-like domain 1 found in retinitis pigmentosa 1 (RP1)-like protein; RP1, also ...
 37-115 4.06e-38

Doublecortin-like domain 1 found in retinitis pigmentosa 1 (RP1)-like protein; RP1, also termed oxygen-regulated protein 1, is a member of the doublecortin (DCX) family. Its DCX domains occur in double tandem repeats. RP1 is associated with retinitis pigmentosa, which is a type of inherited blindness. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The RP1 protein is expressed in photoreceptors and is required for correct stacking of outer segment discs. It interacts with many of the same cytoskeleton related proteins that other members of the DCX family interact with.


Pssm-ID: 340665  Cd Length: 79  Bit Score: 137.25  E-value: 4.06e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 704523270   37 KKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCSDKKYVKP 115
Cdd:cd17145     1 KRVCFYKSGDPQFGGLRMVVNSRSFKTFDALLDNLSKKVPLPFGVRNITTPRGVHHITSLEDLEDGKSYICSHQKKVKP 79
DCX2_RP1 cd17147
Dublecortin-like domain 2 found in retinitis pigmentosa 1 (RP1)-like protein; RP1, also termed ...
 162-237 1.35e-27

Dublecortin-like domain 2 found in retinitis pigmentosa 1 (RP1)-like protein; RP1, also termed oxygen-regulated protein 1, is a member of doublecortin (DCX) superfamily that contains double tandem repeats of the DCX domains. RP1 is associated with retinitis pigmentosa, which is a type of inherited blindness. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The RP1 protein is expressed in photoreceptors that is required for correct stacking of outer segment discs. RP1 protein interacts with many of the same cytoskeleton related proteins that other members of the DCX family interact with.


Pssm-ID: 340667  Cd Length: 76  Bit Score: 107.15  E-value: 1.35e-27
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 704523270  162 KKITLVKNGESGFRRSIILNRRNARSFKTLLDEISEILQFPVKKLYTVDGKKIDSMQALLHCPSVLVCVGREPFKP 237
Cdd:cd17147     1 RKLIVFKNGDPGFKHTLILNKKTTQSFEALLDHVSELMQFPVVKLYTTDGRRVDSLQALILSSGAVVAAGREPFKP 76
DCX smart00537
Domain in the Doublecortin (DCX) gene product; Tandemly-repeated domain in doublin, the ...
 36-117 1.03e-22

Domain in the Doublecortin (DCX) gene product; Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.


Pssm-ID: 214711  Cd Length: 89  Bit Score: 93.48  E-value: 1.03e-22
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270     36 AKKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLS--HRVPLPFGVRTITTPRGIHcISELDQLEDGGCYLCSDKKYV 113
Cdd:smart00537    5 PKRIRFYRNGDRFFKGVRLVVNRKRFKSFEALLQDLTevVKLDLPHGVRKLYTLDGKK-VTSLDELEDGGSYVASGTEAF 83


                    ....
gi 704523270    114 KPIN 117
Cdd:smart00537   84 KKVD 87
DCX2_RP_like cd17070
Dublecortin-like domain 2 found in retinitis pigmentosa (RP)-like protein; RP-like protein ...
 162-230 3.30e-22

Dublecortin-like domain 2 found in retinitis pigmentosa (RP)-like protein; RP-like protein family is part of doublecortin (DCX) superfamily with double tandem DCX repeats that are associated with retinitis pigmentosa. DCX is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. RP-like proteins are colocalized to the photoreceptor and share a function in outer segment disc morphogenesis.


Pssm-ID: 340590  Cd Length: 69  Bit Score: 91.54  E-value: 3.30e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 704523270  162 KKITLVKNGESGFRRSIILNRRNARSFKTLLDEISEILQFPVKKLYTVDGKKIDSMQALLHCPSVLVCV 230
Cdd:cd17070     1 KVITVISNGDPHSRHTILLNRRTTQSFEQVLQDLSELLKGPVRKLYTTDGKKVESLSALFHGPDEYVAA 69
DCX cd01617
Dublecortin-like domain structurally similar to a beta-grasp ubiquitin-like fold; Dublecortin ...
 37-108 2.14e-20

Dublecortin-like domain structurally similar to a beta-grasp ubiquitin-like fold; Dublecortin (DCX) is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. Microtubules are key components of the cytoskeleton that are involved in cell movement, shape determination, division and transport. The DCX gene family consists of eleven paralogs in human and mouse, and its DCX protein domains can occur in double tandem or as single DCX repeats. Proteins with DCX tandem domains in general have roles in microtubule (MT) regulation and signal transduction such as X-linked doublecortin (DCX), retinitis pigmentosa-1 (RP1) and doublecortin-like kinase (DCLK). Single DCX repeat proteins are normally localized to actin-rich subcellular structures, or the nucleus such as DCDC2. DCX is not only a unique MAP in terms of structure, it also interacts with multiple additional proteins. Mutations in human DCX genes are associated with abnormal neuronal migration, epilepsy, and mental retardation.


Pssm-ID: 340456  Cd Length: 73  Bit Score: 86.51  E-value: 2.14e-20
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 704523270   37 KKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPL-PFGVRTITTPRGiHCISELDQLEDGGCYLCS 108
Cdd:cd01617     1 KRITVFRNGDKNFKGVKVLVKPRRFRTFDQLLDELTEKLGLpTGGVRKLYTPSG-KLVKSLSDLEDGESYVVC 72
DCX1 cd16109
Dublecortin-like domain 1; Members of the doublecortin (DCX) gene family are ...
 36-108 4.48e-18

Dublecortin-like domain 1; Members of the doublecortin (DCX) gene family are microtubule-associated proteins (MAPs). Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The DCX gene family consists of eleven paralogs in human and mouse, and its protein domains can occur in double tandem or single repeats. The family represents the first repeat of the DCX domain which has a stable ubiquitin-like tertiary fold. Proteins with DCX double tandem domains in general have roles in microtubule (MT) regulation and signal transduction such as X-linked doublecortin (DCX), retinitis pigmentosa-1 (RP1) and doublecortin-like kinase (DCLK).


Pssm-ID: 340526  Cd Length: 85  Bit Score: 80.42  E-value: 4.48e-18
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 704523270   36 AKKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDL----SHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCS 108
Cdd:cd16109     2 AKKVRFYRNGDRFFKGIVYAVSSERFRSFEALLADLtrslSDNVNLPQGVRTIFTIDGSRKITSLDELEDGESYVCA 78
DCX1_DCDC2_like cd17071
Dublecortin-like domain 1 found in doublecortin domain-containing protein 2 (DCDC2) and ...
 37-115 1.63e-16

Dublecortin-like domain 1 found in doublecortin domain-containing protein 2 (DCDC2) and similar proteins; DCDC2 is a member of the doublecortin (DCX) family. It is a microtubule-associated protein (MAP) with stable double tandem DCX repeats of ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. Microtubules are key components of the cytoskeleton that are involved in cell movement, shape determination, division and transport. DCDC2 genetic variation in humans is associated with reading disability, attention deficit hyperactivity disorder (ADHD), and difficulties in mathematics. A genetic variant of DCDC2 associates with dyslexia, a common neurobehavioral disorder of reading. DCDC2 protein interacts with many of the same cytoskeleton related proteins that other members of the DCX family interact with.


Pssm-ID: 340591  Cd Length: 80  Bit Score: 75.72  E-value: 1.63e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270   37 KKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPLPFG-VRTITTPRGIHCISELDQLEDGGCYLCSDKKYVKP 115
Cdd:cd17071     1 KIIVVYKNGDPFFPGKKFVVNERQVRTFDAFLNEVTSGIKAPFGaVRSIYTPTGGHRVKDLDSLQNGGVYVAAGSERFKK 80
DCX pfam03607
Doublecortin;
55-111 2.43e-16

Doublecortin;


Pssm-ID: 460986  Cd Length: 60  Bit Score: 74.41  E-value: 2.43e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 704523270    55 AINKRSFKSFNALMDDLSHRVP-LPFG-VRTITTPRGiHCISELDQLEDGGCYLCSDKK 111
Cdd:pfam03607    1 VVNKRRFRSFDALLDELTEKVVkLPFGaVRKLYTLDG-KRVTSLDELEDGGVYVAAGRE 58
DCX1_DCX cd16112
Dublecortin-like domain 1 found in neuronal migration protein doublecortin (DCX); DCX, also ...
 36-117 3.89e-15

Dublecortin-like domain 1 found in neuronal migration protein doublecortin (DCX); DCX, also termed doublin or lissencephalin-X (Lis-XDCX), is a microtubule-associated protein (MAP). It belongs to the doublecortin (DCX) family, has double tandem DCX repeats, and is expressed in migrating neurons. Structure studies show that the N-terminal DCX domain has a stable ubiquitin-like fold. DCX is not only a unique MAP in terms of structure, it also interacts with multiple additional proteins. Mutations in the human DCX genes are associated with abnormal neuronal migration, epilepsy, and mental retardation.


Pssm-ID: 340529  Cd Length: 89  Bit Score: 72.25  E-value: 3.89e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270   36 AKKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDL----SHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCSDKK 111
Cdd:cd16112     2 AKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLtrslSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDN 81


                  ....*.
gi 704523270  112 YVKPIN 117
Cdd:cd16112    82 FFKKVE 87
DCX1_DCDC2C cd17151
Dublecortin-like domain 1 found in doublecortin domain-containing protein 2C (DCDC2C); DCDC2 ...
 37-114 4.32e-15

Dublecortin-like domain 1 found in doublecortin domain-containing protein 2C (DCDC2C); DCDC2 is a member of doublecortin (DCX) family. It is a microtubule-associated protein (MAP) with stable double tandem DCX repeats of ubiquitin-like tertiary fold. Microtubules are key components of the cytoskeleton that are involved in cell movement, shape determination, division and transport. DCDC2 genetic variation in humans is associated with reading disability, attention deficit hyperactivity disorder (ADHD), and difficulties in mathematics. A genetic variant of DCDC2 associates with dyslexia, a common neurobehavioral disorder of reading. DCDC2 protein interacts with many of the same cytoskeleton related proteins that other members of the DCX family interact with.


Pssm-ID: 340671  Cd Length: 79  Bit Score: 71.74  E-value: 4.32e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 704523270   37 KKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCSDKKYVK 114
Cdd:cd17151     1 KTILVYRNGDPFYQAHKVVIHRRRVKTFDALLRQLTETVKVPFGVRCLYTPRNGHRVKGLDDLQGGGKYVAAGRERFK 78
DCX1_DCLK1 cd17140
Dublecortin-like domain 1 found in doublecortin-like kinase 1 (DCLK1); DCLK1 is a member of ...
 36-108 8.29e-15

Dublecortin-like domain 1 found in doublecortin-like kinase 1 (DCLK1); DCLK1 is a member of doublecortin (DCX) protein superfamily that functions as a microtubule-associated protein (MAP), and contains two conserved tubulin binding domains. The DCX domain has a stable ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. In addition to microtubule-binding domains, DCLK encodes a serine/threonine kinase domain that is similar to Ca/calmodulin-dependent (Cam) protein kinases. DCLK1 appears to regulate cyclic AMP signaling and is involved in neuronal migration, retrograde transport, neuronal apoptosis and neurogenesis. Unlike DCX, this DCLK has varying levels of expression throughout embryonic and adult life.


Pssm-ID: 340660  Cd Length: 89  Bit Score: 71.19  E-value: 8.29e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 704523270   36 AKKITFFKSGDPQFAGVKMAINKRSFKSFNALMDD----LSHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCS 108
Cdd:cd17140     2 AKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADltrtLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCG 78
DCX pfam03607
Doublecortin;
179-235 1.17e-14

Doublecortin;


Pssm-ID: 460986  Cd Length: 60  Bit Score: 69.78  E-value: 1.17e-14
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 704523270   179 ILNRRNARSFKTLLDEISE---ILQFP-VKKLYTVDGKKIDSMQaLLHCPSVLVCVGREPF 235
Cdd:pfam03607    1 VVNKRRFRSFDALLDELTEkvvKLPFGaVRKLYTLDGKRVTSLD-ELEDGGVYVAAGREKF 60
DCX1_DCDC2 cd17149
Dublecortin-like domain 1 found in doublecortin domain-containing protein 2 (DCDC2); DCDC2 is ...
 37-114 1.79e-14

Dublecortin-like domain 1 found in doublecortin domain-containing protein 2 (DCDC2); DCDC2 is a member of doublecortin (DCX) family. It is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. Microtubules are key components of the cytoskeleton that are involved in cell movement, shape determination, division and transport. DCDC2 genetic variation in humans is associated with reading disability, attention deficit hyperactivity disorder (ADHD), and difficulties in mathematics. A genetic variant of DCDC2 associates with dyslexia, a common neurobehavioral disorder of reading. DCDC2 protein interacts with many of the same cytoskeleton related proteins that other members of the DCX family interact with.


Pssm-ID: 340669  Cd Length: 80  Bit Score: 69.80  E-value: 1.79e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 704523270   37 KKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPLPFG-VRTITTPRGIHCISELDQLEDGGCYLCSDKKYVK 114
Cdd:cd17149     1 KNVLVYRNGDPFYAGRRLVINEKRVSSFEVFLKEVTGGVQAPFGaVRNIYTPRGGHRVRSLEQLQSGEQYVAAGRERFK 79
DCX cd01617
Dublecortin-like domain structurally similar to a beta-grasp ubiquitin-like fold; Dublecortin ...
 162-229 5.88e-14

Dublecortin-like domain structurally similar to a beta-grasp ubiquitin-like fold; Dublecortin (DCX) is a microtubule-associated protein (MAP) with a stable ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. Microtubules are key components of the cytoskeleton that are involved in cell movement, shape determination, division and transport. The DCX gene family consists of eleven paralogs in human and mouse, and its DCX protein domains can occur in double tandem or as single DCX repeats. Proteins with DCX tandem domains in general have roles in microtubule (MT) regulation and signal transduction such as X-linked doublecortin (DCX), retinitis pigmentosa-1 (RP1) and doublecortin-like kinase (DCLK). Single DCX repeat proteins are normally localized to actin-rich subcellular structures, or the nucleus such as DCDC2. DCX is not only a unique MAP in terms of structure, it also interacts with multiple additional proteins. Mutations in human DCX genes are associated with abnormal neuronal migration, epilepsy, and mental retardation.


Pssm-ID: 340456  Cd Length: 73  Bit Score: 68.03  E-value: 5.88e-14
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 704523270  162 KKITLVKNGESGFRRS-IILNRRNARSFKTLLDEISEILQ---FPVKKLYTVDGKKIDSMQALLHCPSVLVC 229
Cdd:cd01617     1 KRITVFRNGDKNFKGVkVLVKPRRFRTFDQLLDELTEKLGlptGGVRKLYTPSGKLVKSLSDLEDGESYVVC 72
DCX smart00537
Domain in the Doublecortin (DCX) gene product; Tandemly-repeated domain in doublin, the ...
 161-237 1.22e-12

Domain in the Doublecortin (DCX) gene product; Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.


Pssm-ID: 214711  Cd Length: 89  Bit Score: 64.97  E-value: 1.22e-12
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270    161 PKKITLVKNGESGFR-RSIILNRRNARSFKTLLDEISEI----LQFPVKKLYTVDGKKIDSMQALLHcPSVLVCVGREPF 235
Cdd:smart00537    5 PKRIRFYRNGDRFFKgVRLVVNRKRFKSFEALLQDLTEVvkldLPHGVRKLYTLDGKKVTSLDELED-GGSYVASGTEAF 83


                    ..
gi 704523270    236 KP 237
Cdd:smart00537   84 KK 85
DCX1_DCDC2B cd17150
Dublecortin-like domain 1 found in doublecortin domain-containing protein 2B (DCDC2B); DCDC2 ...
 37-106 1.61e-12

Dublecortin-like domain 1 found in doublecortin domain-containing protein 2B (DCDC2B); DCDC2 is a member of doublecortin (DCX) family. It is a microtubule-associated protein (MAP) with stable double tandem DCX repeats of ubiquitin-like tertiary fold. Microtubules are key components of the cytoskeleton that are involved in cell movement, shape determination, division and transport. DCDC2 genetic variation in humans is associated with reading disability, attention deficit hyperactivity disorder (ADHD), and difficulties in mathematics. A genetic variant of DCDC2 associates with dyslexia, a common neurobehavioral disorder of reading. DCDC2 protein interacts with many of the same cytoskeleton related proteins that other members of the DCX family interact with.


Pssm-ID: 340670  Cd Length: 79  Bit Score: 64.44  E-value: 1.61e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270   37 KKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYL 106
Cdd:cd17150     1 KNVVVYRNGDPFFTGRKFVVNQRQFLTFEAFLNEVTSNIQAPVAVRNLYTPREGHRVTELGDLQNGGHYV 70
DCX1_DCLK2 cd17141
Dublecortin-like domain 1 found in doublecortin-like kinase 2 (DCLK2); DCLK2 is a member of ...
 36-108 6.23e-12

Dublecortin-like domain 1 found in doublecortin-like kinase 2 (DCLK2); DCLK2 is a member of doublecortin (DCX) protein superfamily that functions as a microtubule-associated protein (MAP), and contains two conserved tubulin binding domains, which typically occur in tandem. The DCX domain has a stable ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier (Ubiquitination) in eukaryotes that is involved in various cellular processes including transcriptional regulation, cell cycle control, and DNA repair. In addition to microtubule binding domains, DCLK encodes a serine/threonine kinase-domain that is similar to Ca/calmodulin-dependent (Cam) protein kinases. Molecular actions of DCX members are less well characterized and it shows that DCLK2 members regulate cyclic AMP signaling. Unlike DCX, this DCLK has varying levels of expression throughout embryonic and adult life.


Pssm-ID: 340661  Cd Length: 85  Bit Score: 63.00  E-value: 6.23e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 704523270   36 AKKITFFKSGDPQFAGVKMAINKRSFKSFNALMDD----LSHRVPLPFGVRTITTPRGIHCISELDQLEDGGCYLCS 108
Cdd:cd17141     2 AKKVRFYRNGDRYFKGLVYAVSSDRFRSFDALLMEltrsLSDNVNLPQGVRTIYTIDGSKKITSLDELLEGESYVCA 78
DCX_DCLK3 cd16111
Doublecortin-like domain found in doublecortin-like kinase 3 (DCLK3); DCLK3 is a member of ...
 161-234 2.08e-11

Doublecortin-like domain found in doublecortin-like kinase 3 (DCLK3); DCLK3 is a member of doublecortin (DCX) protein family. It functions as a microtubule-associated protein (MAP). DCLK3 contains only one N-terminal doublecortin domain (DCX), unlike DCLK1 and DCLK2 which each have two conserved DCX domains. The DCX domain has a stable ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. In addition to microtubule binding domains, DCLK3 has a serine/threonine kinase domain that is similar to Ca/calmodulin-dependent (Cam) protein kinases.


Pssm-ID: 340528  Cd Length: 85  Bit Score: 61.30  E-value: 2.08e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  161 PKKITLVKNGESGFRR-SIILNRRNARSFKTLLDEISEILQFP------VKKLYTVDGKKIDSMQALLHCPSVLVCVGRE 233
Cdd:cd16111     2 PKVITVVRNGGQPRTKiTILLNRRSVQTFEQLMADISEALGFPrwkndrVRKLYSLRGREVRSVSDFFREDDVFIATGRE 81


                  .
gi 704523270  234 P 234
Cdd:cd16111    82 Q 82
DCX2 cd17069
Dublecortin-like domain 2; Members in doublecortin (DCX) gene family are ...
 161-235 1.86e-08

Dublecortin-like domain 2; Members in doublecortin (DCX) gene family are microtubule-associated proteins (MAPs). Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. The DCX gene family consists of eleven paralogs in human and mouse, and its protein domains can occur in double tandem or as a single repeat. The first repeat of DCX domain has a stable ubiquitin-like tertiary fold. Proteins with DCX double tandem domains in general have roles in microtubule (MT) regulation and signal transduction such as X-linked doublecortin (DCX), retinitis pigmentosa-1 (RP1) and doublecortin-like kinase (DCLK).


Pssm-ID: 340589  Cd Length: 84  Bit Score: 52.77  E-value: 1.86e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  161 PKKITLVKNGeSGFRRS--IILNRRNARSFKTLLDEISEILQF---PVKKLYTVDGKKIDSMQALLHCPSVLVCVGREPF 235
Cdd:cd17069     4 PKLVTVIRNG-TKPRKAvrILLNKKTAHSFEQVLTDITEAIKLdsgAVRKLFTLDGRQVTCLQDFFGDDDVFIAYGPEKF 82
DCX2_DCX cd17142
Dublecortin-like domain 2 found in neuronal migration protein doublecortin (DCX); DCX, also ...
 161-236 1.53e-07

Dublecortin-like domain 2 found in neuronal migration protein doublecortin (DCX); DCX, also termed doublin or lissencephalin-X (Lis-XDCX), is a microtubule-associated protein (MAP). It belongs to the doublecortin (DCX) family, has double tandem DCX repeats, and is expressed in migrating neurons. Structure studies show that the N-terminal DCX domain has a stable ubiquitin-like fold. DCX is not only a unique MAP in terms of its structure, but also interacts with multiple additional proteins. Mutations in the human DCX genes are associated with abnormal neuronal migration, epilepsy, and mental retardation.


Pssm-ID: 340662  Cd Length: 84  Bit Score: 50.43  E-value: 1.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  161 PKKITLVKNGESGFRR-SIILNRRNARSFKTLLDEISEILQFP---VKKLYTVDGKKIDSMQALLHCPSVLVCVGREPFK 236
Cdd:cd17142     4 PKLVTIIRSGVKPRKAvRVLLNKKTAHSFEQVLTDITEAIKLEtgvVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 83
DCX1_DCDC2_like cd17071
Dublecortin-like domain 1 found in doublecortin domain-containing protein 2 (DCDC2) and ...
 162-237 1.68e-06

Dublecortin-like domain 1 found in doublecortin domain-containing protein 2 (DCDC2) and similar proteins; DCDC2 is a member of the doublecortin (DCX) family. It is a microtubule-associated protein (MAP) with stable double tandem DCX repeats of ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes, including transcriptional regulation, cell cycle control, and DNA repair. Microtubules are key components of the cytoskeleton that are involved in cell movement, shape determination, division and transport. DCDC2 genetic variation in humans is associated with reading disability, attention deficit hyperactivity disorder (ADHD), and difficulties in mathematics. A genetic variant of DCDC2 associates with dyslexia, a common neurobehavioral disorder of reading. DCDC2 protein interacts with many of the same cytoskeleton related proteins that other members of the DCX family interact with.


Pssm-ID: 340591  Cd Length: 80  Bit Score: 47.22  E-value: 1.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  162 KKITLVKNGESGFR-RSIILNRRNARSFKTLLDEISEILQFP---VKKLYTVDG----KKIDSMQAllhcPSVLVCVGRE 233
Cdd:cd17071     1 KIIVVYKNGDPFFPgKKFVVNERQVRTFDAFLNEVTSGIKAPfgaVRSIYTPTGghrvKDLDSLQN----GGVYVAAGSE 76


                  ....
gi 704523270  234 PFKP 237
Cdd:cd17071    77 RFKK 80
DCX2_DCLK1 cd17143
Dublecortin-like domain 2 found in doublecortin-like kinase 1 (DCLK1); DCLK1 is a member of ...
 161-236 9.05e-06

Dublecortin-like domain 2 found in doublecortin-like kinase 1 (DCLK1); DCLK1 is a member of doublecortin (DCX) protein family that functions as a microtubule-associated protein (MAP), and contains two conserved tubulin binding domains. The DCX domain has a stable ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes including transcriptional regulation, cell cycle control, and DNA repair. In addition to microtubule binding domains, DCLK encodes a serine/threonine kinase-domain that is similar to Ca/calmodulin-dependent (Cam) protein kinases. DCLK1 appears to regulate cyclic AMP signaling and is involved in neuronal migration, retrograde transport, neuronal apoptosis and neurogenesis. Unlike DCX, the DCLK has varying levels of expression throughout embryonic and adult life.


Pssm-ID: 340663  Cd Length: 84  Bit Score: 45.33  E-value: 9.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  161 PKKITLVKNGESGFRR-SIILNRRNARSFKTLLDEISEILQF---PVKKLYTVDGKKIDSMQALLHCPSVLVCVGREPFK 236
Cdd:cd17143     4 PKLVTIIRSGVKPRKAvRILLNKKTAHSFEQVLTDITDAIKLdsgVVKRLYTLDGKQVMCLQDFFGDDDIFIACGPEKFR 83
DCX2_DCLK2 cd17144
Dublecortin-like domain 2 found in doublecortin-like kinase 2 (DCLK2); DCLK2 is a member of ...
 161-236 9.68e-06

Dublecortin-like domain 2 found in doublecortin-like kinase 2 (DCLK2); DCLK2 is a member of doublecortin (DCX) protein family that functions as a microtubule-associated protein (MAP), and contains two conserved tubulin binding domains, which typically occur in double tandem. The DCX domain has a stable ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes including transcriptional regulation, cell cycle control, and DNA repair. In addition to microtubule binding domains, DCLK encodes a serine/threonine kinase-domain that is similar to Ca/calmodulin-dependent (Cam) protein kinases. DCLK2 members regulate cyclic AMP signaling. Unlike DCX, the DCLK has varying levels of expression throughout embryonic and adult life.


Pssm-ID: 340664  Cd Length: 84  Bit Score: 45.40  E-value: 9.68e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  161 PKKITLVKNGESGFRR-SIILNRRNARSFKTLLDEISEILQFP---VKKLYTVDGKKIDSMQALLHCPSVLVCVGREPFK 236
Cdd:cd17144     4 PKLVTVIRSGVKPRKAvRILLNKKTAHSFEQVLTDITEAIKLDsgvVKRLCTLDGKQVTCLQDFFGDDDVFIACGPEKYR 83
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1181-1480 2.97e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 45.76  E-value: 2.97e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1181 EEASVSEAAQDMKKIPSSSVEEAAEnGNANENDEGELQpsgTEVEGNEEMETELNEVGSSlMNGDTEGAEIsgsqncete 1260
Cdd:TIGR00927  650 ERPTEAEGENGEESGGEAEQEGETE-TKGENESEGEIP---AERKGEQEGEGEIEAKEAD-HKGETEAEEV--------- 715

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1261 dkedeekseaEDEADNEAEEAEEPEDEDIGVDDEEERSECRGDAEGsGTDNNLEGDAAEGREEAEQHEAEAVEDAnpESE 1340
Cdd:TIGR00927  716 ----------EHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEG-KHEVETEGDRKETEHEGETEAEGKEDED--EGE 782

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1341 DETCPAEEEQNSEGGDKYDENDEEPTSDGPDkaheKHKGNNKVSEKALRAKGKKTNRRLETVNKAAAfscyssmgnfsQQ 1420
Cdd:TIGR00927  783 IQAGEDGEMKGDEGAEGKVEHEGETEAGEKD----EHEGQSETQADDTEVKDETGEQELNAENQGEA-----------KQ 847

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1421 SQKGSEDEGEEECKDDnnatnnqpngEVQSDESSKQPQMYPDSEEEEDKASSGSDPLGDE 1480
Cdd:TIGR00927  848 DEKGVDGGGGSDGGDS----------EEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
DCX2_DCDC2_like cd16113
Doublecortin-like domain 2 found in doublecortin domain-containing protein 2 (DCDC2); DCDC2 is ...
 36-105 3.71e-04

Doublecortin-like domain 2 found in doublecortin domain-containing protein 2 (DCDC2); DCDC2 is a member of the doublecortin (DCX) family. It is a microtubule-associated protein (MAP) with stable double tandem DCX repeats of a ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes including transcriptional regulation, cell cycle control, and DNA repair. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. DCDC2 genetic variation in humans is associated with reading disability, attention deficit hyperactivity disorder (ADHD), and difficulties in mathematics. A genetic variant of DCDC2 associates with dyslexia, a common neurobehavioral disorder of reading. DCDC2 protein interacts with many of the same cytoskeleton related proteins that other members of the DCX family interact with.


Pssm-ID: 340530  Cd Length: 74  Bit Score: 40.25  E-value: 3.71e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 704523270   36 AKKITFFKSGDPQFAGVKMAINKRSFKSFNALMDDLSHRVPLPFG-VRTITTPRGiHCISELDQLEDGGCY 105
Cdd:cd16113     1 PKTIHVFPNGDLLHPPSKVLLTKRRLPNWDTVLEEVTEKVKLQTGaVRKLYTLDG-KRISDPDELVNGGQY 70
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1177-1398 8.13e-04

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 44.22  E-value: 8.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1177 KKNDEEASVSEAAQDMKKIPSSSVEEAAENGNANE----NDEGELQPSGTEVEGNEEMETELNEVGSSLMNGDTEGAEIS 1252
Cdd:TIGR00927  688 ERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEaegtEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHE 767

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1253 GSQNCETEDKEDEEKSEAEDEADNEAeeaeepededigvDDEEERSECRGDAEGSGTDNNLEGDAAEGREEAEQHEAEAV 1332
Cdd:TIGR00927  768 GETEAEGKEDEDEGEIQAGEDGEMKG-------------DEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGE 834

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1333 EDANPESEDETCPAEE----EQNSEGGDKYDENDEEPTSDGPDKAHEKHKGNNKVSEKALRAKGKKTNRR 1398
Cdd:TIGR00927  835 QELNAENQGEAKQDEKgvdgGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQK 904
2A1904 TIGR00927
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ...
 1295-1514 1.57e-03

K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273344 [Multi-domain]  Cd Length: 1096  Bit Score: 43.06  E-value: 1.57e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1295 EERSECRGDAEGsgtdnnlEGDAAEGREEAEQHEAEAVEDANPESEDETcpAEEEQNSEGGDKYDENDEEPTSDGPDKAH 1374
Cdd:TIGR00927  684 EIPAERKGEQEG-------EGEIEAKEADHKGETEAEEVEHEGETEAEG--TEDEGEIETGEEGEEVEDEGEGEAEGKHE 754

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270  1375 EKHKGNNKVSEKALRAKGKKTNRRLETVNKAAafscyssmGNFSQQSQKGSEDEGEEEckdDNNATNNQPNGEVQSDESS 1454
Cdd:TIGR00927  755 VETEGDRKETEHEGETEAEGKEDEDEGEIQAG--------EDGEMKGDEGAEGKVEHE---GETEAGEKDEHEGQSETQA 823

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 704523270  1455 KQPQMYPDSEEEEDKASSGSDPLGDEDQADAE----GADPKETENTDELQASKKKNSDEIDQDD 1514
Cdd:TIGR00927  824 DDTEVKDETGEQELNAENQGEAKQDEKGVDGGggsdGGDSEEEEEEEEEEEEEEEEEEEEEEEE 887
DCX2_DCDC2_like cd16113
Doublecortin-like domain 2 found in doublecortin domain-containing protein 2 (DCDC2); DCDC2 is ...
 161-216 2.09e-03

Doublecortin-like domain 2 found in doublecortin domain-containing protein 2 (DCDC2); DCDC2 is a member of the doublecortin (DCX) family. It is a microtubule-associated protein (MAP) with stable double tandem DCX repeats of a ubiquitin-like tertiary fold. Ubiquitin (Ub) is a protein modifier in eukaryotes that is involved in various cellular processes including transcriptional regulation, cell cycle control, and DNA repair. Microtubules are key components of cytoskeleton that are involved in cell movement, shape determination, division and transport. DCDC2 genetic variation in humans is associated with reading disability, attention deficit hyperactivity disorder (ADHD), and difficulties in mathematics. A genetic variant of DCDC2 associates with dyslexia, a common neurobehavioral disorder of reading. DCDC2 protein interacts with many of the same cytoskeleton related proteins that other members of the DCX family interact with.


Pssm-ID: 340530  Cd Length: 74  Bit Score: 38.33  E-value: 2.09e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 704523270  161 PKKITLVKNG---ESGFRrsIILNRRNARSFKTLLDEISEILQFP---VKKLYTVDGKKIDS 216
Cdd:cd16113     1 PKTIHVFPNGdllHPPSK--VLLTKRRLPNWDTVLEEVTEKVKLQtgaVRKLYTLDGKRISD 60
PHA03169 PHA03169
hypothetical protein; Provisional
 1293-1494 3.06e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 41.88  E-value: 3.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270 1293 DEEERSEcrGDAEGSGTDNNLEGDAAEGreeaeQHEAEAVEDANPESEDETCPAEEEqnSEGGDKYDENDEEPTSDGPDK 1372
Cdd:PHA03169   83 EKEERGQ--GGPSGSGSESVGSPTPSPS-----GSAEELASGLSPENTSGSSPESPA--SHSPPPSPPSHPGPHEPAPPE 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 704523270 1373 AHEKHKGNNKVSekalrakgkktnrrletvnkaaafscyssmgnFSQQSQKGSEDEGE---EECKDDNNATNNQPNGEVQ 1449
Cdd:PHA03169  154 SHNPSPNQQPSS--------------------------------FLQPSHEDSPEEPEpptSEPEPDSPGPPQSETPTSS 201

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 704523270 1450 SDESSKQPQMYPDSEEEEDKASSGSDPLGDEDQADAEGADPKETE 1494
Cdd:PHA03169  202 PPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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