large ribosomal subunit protein uL29m isoform X1 [Rattus norvegicus]
Protein Classification
uL29 family ribosomal protein( domain architecture ID 417)
uL29 family ribosomal protein such as archaeal 50S ribosomal protein L29, plasmodium 60S ribosomal protein L35, yeast mitochondrial 54S ribosomal protein L4, and chloroplast 50S ribosomal protein L29
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| Ribosomal_L29_HIP super family | cl09943 | Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called ... |
1-39 | 1.08e-10 | ||
Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulation of blood coagulation. It has also been shown to inhibit apoptosis in cancer cells. The actual alignment was detected with superfamily member pfam06984: Pssm-ID: 471954 Cd Length: 86 Bit Score: 54.36 E-value: 1.08e-10
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| Name | Accession | Description | Interval | E-value | ||
| MRP-L47 | pfam06984 | Mitochondrial 39-S ribosomal protein L47 (MRP-L47); This family represents the N-terminal ... |
1-39 | 1.08e-10 | ||
Mitochondrial 39-S ribosomal protein L47 (MRP-L47); This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. Pssm-ID: 369158 Cd Length: 86 Bit Score: 54.36 E-value: 1.08e-10
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| Name | Accession | Description | Interval | E-value | ||
| MRP-L47 | pfam06984 | Mitochondrial 39-S ribosomal protein L47 (MRP-L47); This family represents the N-terminal ... |
1-39 | 1.08e-10 | ||
Mitochondrial 39-S ribosomal protein L47 (MRP-L47); This family represents the N-terminal region (approximately 8 residues) of the eukaryotic mitochondrial 39-S ribosomal protein L47 (MRP-L47). Mitochondrial ribosomal proteins (MRPs) are the counterparts of the cytoplasmic ribosomal proteins, in that they fulfil similar functions in protein biosynthesis. However, they are distinct in number, features and primary structure. Pssm-ID: 369158 Cd Length: 86 Bit Score: 54.36 E-value: 1.08e-10
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