NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|595842370|ref|XP_007208405|]
View 

glycine-rich domain-containing protein 1 [Prunus persica]

Protein Classification

glycine-rich domain-containing protein( domain architecture ID 18074126)

glycine-rich domain-containing protein similar to Arabidopsis thaliana glycine-rich domain-containing protein 1 and 2 (GRDP1/2), which are involved in development and stress responses

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 95-237 1.45e-74

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


:

Pssm-ID: 429333  Cd Length: 139  Bit Score: 239.14  E-value: 1.45e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595842370   95 YKTDCEKLYGKILDNSNVLSSVQGSCKGQTEEIWNSMYPEEPYNLDLNKAlsEDISERISGLEKCTKYDLISAVKRQSPF 174
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLESNGL--SDIINEVSGDSSSISYDLVSAVKRQRDF 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 595842370  175 FYQVSRPHMNHDVFLQGAVARYKGFLHLIKRNREKSLkrFCVPTYDVDLIWHSHQLHPVSYCK 237
Cdd:pfam07173  79 YYQVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFS--FLVPTYDIDLIWHTHQLHPISYAK 139
GRDP-like super family cl42056
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 17-96 1.08e-06

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


The actual alignment was detected with superfamily member pfam07173:

Pssm-ID: 477928  Cd Length: 139  Bit Score: 48.86  E-value: 1.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595842370   17 ISVDLVAAAQKQLLFLAAVDRNRFlYEGPALERAIYRYNAcWLPMLAKYSEfqisEGPLVVP-LDCEWIWHCHRLNPVQY 95
Cdd:pfam07173  64 ISYDLVSAVKRQRDFYYQVSLPHY-SDEVFLEAAVQRYKG-FLYLLKRNPE----EFSFLVPtYDIDLIWHTHQLHPISY 137


                  .
gi 595842370   96 K 96
Cdd:pfam07173 138 A 138
 
Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 95-237 1.45e-74

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 239.14  E-value: 1.45e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595842370   95 YKTDCEKLYGKILDNSNVLSSVQGSCKGQTEEIWNSMYPEEPYNLDLNKAlsEDISERISGLEKCTKYDLISAVKRQSPF 174
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLESNGL--SDIINEVSGDSSSISYDLVSAVKRQRDF 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 595842370  175 FYQVSRPHMNHDVFLQGAVARYKGFLHLIKRNREKSLkrFCVPTYDVDLIWHSHQLHPVSYCK 237
Cdd:pfam07173  79 YYQVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFS--FLVPTYDIDLIWHTHQLHPISYAK 139
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 17-96 1.08e-06

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 48.86  E-value: 1.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595842370   17 ISVDLVAAAQKQLLFLAAVDRNRFlYEGPALERAIYRYNAcWLPMLAKYSEfqisEGPLVVP-LDCEWIWHCHRLNPVQY 95
Cdd:pfam07173  64 ISYDLVSAVKRQRDFYYQVSLPHY-SDEVFLEAAVQRYKG-FLYLLKRNPE----EFSFLVPtYDIDLIWHTHQLHPISY 137


                  .
gi 595842370   96 K 96
Cdd:pfam07173 138 A 138
 
Name Accession Description Interval E-value
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 95-237 1.45e-74

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 239.14  E-value: 1.45e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595842370   95 YKTDCEKLYGKILDNSNVLSSVQGSCKGQTEEIWNSMYPEEPYNLDLNKAlsEDISERISGLEKCTKYDLISAVKRQSPF 174
Cdd:pfam07173   1 YRSDCESLFGKIIDHPAIDSSNEEYAYSRTRELWLRLYPDEPFDLESNGL--SDIINEVSGDSSSISYDLVSAVKRQRDF 78

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 595842370  175 FYQVSRPHMNHDVFLQGAVARYKGFLHLIKRNREKSLkrFCVPTYDVDLIWHSHQLHPVSYCK 237
Cdd:pfam07173  79 YYQVSLPHYSDEVFLEAAVQRYKGFLYLLKRNPEEFS--FLVPTYDIDLIWHTHQLHPISYAK 139
GRDP-like pfam07173
Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich ...
 17-96 1.08e-06

Glycine-rich domain-containing protein-like; This entry includes Arabidopsis Glycine-rich domain- containing protein 1 and 2 (GRDP1/2). They are involved in development and stress responses.


Pssm-ID: 429333  Cd Length: 139  Bit Score: 48.86  E-value: 1.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 595842370   17 ISVDLVAAAQKQLLFLAAVDRNRFlYEGPALERAIYRYNAcWLPMLAKYSEfqisEGPLVVP-LDCEWIWHCHRLNPVQY 95
Cdd:pfam07173  64 ISYDLVSAVKRQRDFYYQVSLPHY-SDEVFLEAAVQRYKG-FLYLLKRNPE----EFSFLVPtYDIDLIWHTHQLHPISY 137


                  .
gi 595842370   96 K 96
Cdd:pfam07173 138 A 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH