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Conserved domains on  [gi|585187043|ref|XP_006744991|]
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bifunctional glutamate/proline--tRNA ligase [Leptonychotes weddellii]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN02907 super family cl33597
glutamate-tRNA ligase
90-765 0e+00

glutamate-tRNA ligase


The actual alignment was detected with superfamily member PLN02907:

Pssm-ID: 215492 [Multi-domain]  Cd Length: 722  Bit Score: 837.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  90 PPLGALLA--VEHVKDDVSISLEEGKENILYVSENVVFTDINSILRYLARVATTTGLYGSNLLEHTEIDHWLEFSATkLS 167
Cdd:PLN02907  12 PPLAVIAAakVAGVPLTIDPSLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAFESSQVDEWLDYAPT-FS 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 168 SCNLFTSAINELNHCLSLRTYLVGNSLSLADLCVWATLKGSAAWQEQLKQNKAPVHVKRWFGFLEAQ------QAFQSVG 241
Cdd:PLN02907  91 SGSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEysdilnEVTAAYV 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 242 TKWNVSTTKAKVTPEKKQDVGKF----------VELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIM 311
Cdd:PLN02907 171 GKRGAGKPAAAKSKEKVADAGKAdgakdkgsfeVDLPGAEEGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIV 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 312 RFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFESIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRKN 391
Cdd:PLN02907 251 RFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNN 330
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 392 SIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHAL 471
Cdd:PLN02907 331 SVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHAL 410
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 472 RTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQF 551
Cdd:PLN02907 411 RSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQF 490
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 552 IAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPV---NIPEaQEEMKEVAKHPKNPDVGLKPVWYSPKVF 628
Cdd:PLN02907 491 ILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEGRVLLtltDGPE-TPFVRIIPRHKKYEGAGKKATTFTNRIW 569
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 629 IEGADAETLSEGEMVTFINWGNINITKINKNADGKIVSLDAKLNLENkDYKKTT-KITWLAETAHALPIPaiCVTYEHLI 707
Cdd:PLN02907 570 LDYADAEAISEGEEVTLMDWGNAIIKEITKDEGGAVTALSGELHLEG-SVKTTKlKLTWLPDTNELVPLS--LVEFDYLI 646
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 585187043 708 TKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVS 765
Cdd:PLN02907 647 TKKKLEEDDNFLDVLNPCTKKETAALGDSNMRNLKRGEIIQLERKGYYRCDAPFVRSS 704
WEPRS_RNA cd00936
WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote ...
810-859 3.27e-25

WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.


:

Pssm-ID: 238473 [Multi-domain]  Cd Length: 50  Bit Score: 98.85  E-value: 3.27e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 585187043 810 LYNRVAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPG 859
Cdd:cd00936    1 LYKKIAAQGDLVRELKAKKAPKEEIDAAVKKLLALKADYKEATGQDYKPG 50
ProRS-C_1 pfam09180
Prolyl-tRNA synthetase, C-terminal; Members of this family are predominantly found in ...
891-974 1.97e-15

Prolyl-tRNA synthetase, C-terminal; Members of this family are predominantly found in prokaryotic prolyl-tRNA synthetase. They contain a zinc binding site, and adopt a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif.


:

Pssm-ID: 462709  Cd Length: 67  Bit Score: 71.40  E-value: 1.97e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  891 EVVRKLKAEKapkIAQIPFCGEIDCEDWIKKTTardqdlepgapsmGAKSLCVPFKplcELQPGARCV-CGRNaAKYYTL 969
Cdd:pfam09180   3 EFKEALEEKG---FVLAPWCGDEECEDKIKEET-------------GATSRCIPFD---QEEEGGKCIvCGKP-AKKWVL 62

                  ....*
gi 585187043  970 FGRSY 974
Cdd:pfam09180  63 FARSY 67
 
Name Accession Description Interval E-value
PLN02907 PLN02907
glutamate-tRNA ligase
90-765 0e+00

glutamate-tRNA ligase


Pssm-ID: 215492 [Multi-domain]  Cd Length: 722  Bit Score: 837.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  90 PPLGALLA--VEHVKDDVSISLEEGKENILYVSENVVFTDINSILRYLARVATTTGLYGSNLLEHTEIDHWLEFSATkLS 167
Cdd:PLN02907  12 PPLAVIAAakVAGVPLTIDPSLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAFESSQVDEWLDYAPT-FS 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 168 SCNLFTSAINELNHCLSLRTYLVGNSLSLADLCVWATLKGSAAWQEQLKQNKAPVHVKRWFGFLEAQ------QAFQSVG 241
Cdd:PLN02907  91 SGSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEysdilnEVTAAYV 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 242 TKWNVSTTKAKVTPEKKQDVGKF----------VELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIM 311
Cdd:PLN02907 171 GKRGAGKPAAAKSKEKVADAGKAdgakdkgsfeVDLPGAEEGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIV 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 312 RFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFESIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRKN 391
Cdd:PLN02907 251 RFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNN 330
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 392 SIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHAL 471
Cdd:PLN02907 331 SVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHAL 410
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 472 RTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQF 551
Cdd:PLN02907 411 RSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQF 490
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 552 IAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPV---NIPEaQEEMKEVAKHPKNPDVGLKPVWYSPKVF 628
Cdd:PLN02907 491 ILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEGRVLLtltDGPE-TPFVRIIPRHKKYEGAGKKATTFTNRIW 569
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 629 IEGADAETLSEGEMVTFINWGNINITKINKNADGKIVSLDAKLNLENkDYKKTT-KITWLAETAHALPIPaiCVTYEHLI 707
Cdd:PLN02907 570 LDYADAEAISEGEEVTLMDWGNAIIKEITKDEGGAVTALSGELHLEG-SVKTTKlKLTWLPDTNELVPLS--LVEFDYLI 646
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 585187043 708 TKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVS 765
Cdd:PLN02907 647 TKKKLEEDDNFLDVLNPCTKKETAALGDSNMRNLKRGEIIQLERKGYYRCDAPFVRSS 704
tRNA-synt_1c pfam00749
tRNA synthetases class I (E and Q), catalytic domain; Other tRNA synthetase sub-families are ...
274-579 7.51e-162

tRNA synthetases class I (E and Q), catalytic domain; Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organizms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).


Pssm-ID: 395606 [Multi-domain]  Cd Length: 314  Bit Score: 477.20  E-value: 7.51e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  274 KVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPD-QFTYTSDHFES 352
Cdd:pfam00749   1 KVRTRFAPSPTGYLHIGHAKAALFNYLYAKNHNGKFILRFEDTDPERETPEFEESILEDLKWLGIKWDyGPYYQSDRFDI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  353 IMKYAEKLIQEGKAYVDDTPAEQMKAEREQ--RIESKHRKNSIEKNLQMW-EEMKKGSQFGQSCCLRAKIDMSSnNGCMR 429
Cdd:pfam00749  81 YYKYAEELIKKGKAYVCFCTPEELEEEREEqeALGSPSRDRYDEENLHLFeEEMKKGSAEGGPATVRAKIPMES-PYVFR 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  430 DPTLYRCKIQP---HPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIR-KPYIWEYSRLNL 505
Cdd:pfam00749 160 DPVRGRIKFTPqeiHDRTGVKWDGYPTYDFAVVIDDHLMGITHVLRTEEFLDNTPKYIWIYDALGWEpPPFIHEYLRLNL 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 585187043  506 NNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSV-VNMEWDKIWAFNKKVIDP 579
Cdd:pfam00749 240 DGTKLSKRKLSWSVDISQVKGWGDPREATLNGLRRRGWTPEGIREFFTREGVIKSFdVNRLSKSLEAFDRKKLDW 314
gltX_arch TIGR00463
glutamyl-tRNA synthetase, archaeal and eukaryotic family; The glutamyl-tRNA synthetases of the ...
218-763 1.98e-151

glutamyl-tRNA synthetase, archaeal and eukaryotic family; The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This model models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases, including all known archaeal enzymes (as of 2010) may act on both tRNA(gln) and tRNA(glu). [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273091 [Multi-domain]  Cd Length: 556  Bit Score: 459.67  E-value: 1.98e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  218 NKAPVHVKRWFGFLEAQQAFQSVGTKWNVS----TTKAKVTPEKKQDVGKF-VELPGAEMGKVTVRFPPEASGYLHIGHA 292
Cdd:TIGR00463  32 NNPELRKKAKEVLEAVEAAVEEVNSLSPEEqkelMKRLGLDIKKKEKKRKGlRELPGAKMGEVVMRFAPNPSGPLHIGHA 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  293 KAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFESIMKYAEKLIQEGKAYVDDTP 372
Cdd:TIGR00463 112 RAAILNHEYAKKYDGKLIIRFDDTDPRRVDPEAYDMILEDLEWLGVKWDEVVYQSDRIETYYDYTRKLIEMGKAYVCDCR 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  373 AEQMKAEREQRIESKHRKNSIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYP 452
Cdd:TIGR00463 192 PEEFRELRNRGEACHCRDRSVEENLERWEEMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRIVKTPHPRTGDKYRVYP 271
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  453 TYDFACPIVDSIEGVTHALRTTEYHD--RDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVnEGLVDGWDDP 530
Cdd:TIGR00463 272 TMDFSVAIDDHLLGVTHVLRGKDHIDnrRKQEYIYRYFGWEPPEFIHWGRLKIDDVRALSTSSARKGIL-RGEYSGWDDP 350
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  531 RFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLK-KEVIPVNIPEAQEEMKevAK 609
Cdd:TIGR00463 351 RLPTLRAIRRRGIRPEAIRKFMLSIGVKINDVTMSWKNIYALNRKIIDEEARRYFFIWNpVKIEIVGLPEPKRVER--PL 428
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  610 HPKNPDVGLKPVWYSPKVFIEGADAETLSegEMVTFINWGNINITKINknadgkivSLDAKLNLENKDYKKTTKITWLAE 689
Cdd:TIGR00463 429 HPDHPEIGERVLILRGEIYVPKDDLEEGV--EPVRLMDAVNVIYSKKE--------LRYHSEGLEGARKLGKSIIHWLPA 498
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 585187043  690 TAhalPIPAICVTYEHLITKPVLGKDEDFkqyvnknskheelmlgdpclkdLKKGDIIQLQRRGFFICDQPYEP 763
Cdd:TIGR00463 499 KD---AVKVKVIMPDASIVEGVIEADASE----------------------LEVGDVVQFERFGFARLDSADKD 547
GlnRS_core cd00807
catalytic core domain of glutaminyl-tRNA synthetase; Glutaminyl-tRNA synthetase (GlnRS) ...
274-583 4.13e-139

catalytic core domain of glutaminyl-tRNA synthetase; Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.


Pssm-ID: 185676 [Multi-domain]  Cd Length: 238  Bit Score: 415.50  E-value: 4.13e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 274 KVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFESI 353
Cdd:cd00807    1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 354 MKYAEKLIQEGKAYVddtpaeqmkaereqrieskhrknsieknlqmweemkkgsqfgqscclrakidmssnngcmrdptl 433
Cdd:cd00807   81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 434 yrckiqpHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKR 513
Cdd:cd00807   96 -------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKR 168
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 514 KLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPR 583
Cdd:cd00807  169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238
GlnS COG0008
Glutamyl- or glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; ...
273-560 2.08e-64

Glutamyl- or glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Glutamyl- or glutaminyl-tRNA synthetase is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 439779 [Multi-domain]  Cd Length: 467  Bit Score: 225.06  E-value: 2.08e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 273 GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQ-FTYTSDHFE 351
Cdd:COG0008    3 MKVRTRFAPSPTGYLHIGHARTALFNWLFARKYGGKFILRIEDTDPERSTEEAVDAILEDLRWLGLDWDEgPYYQSDRFD 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 352 SIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESK--------HRKNSIEKNLQMWEEmkkgsqfGQSCCLRAKI---- 419
Cdd:COG0008   83 IYYEYAEKLIEKGKAYVCFCTPEELEALRETQTAPGkpprydgrCRDLSPEELERMLAA-------GEPPVLRFKIpeeg 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 420 ----DMSS-----NNGCMRDPTLYRckiqphpRTGnkynvYPTYDFACPIVDSIEGVTHALRT------TEYHDrdeqfy 484
Cdd:COG0008  156 vvfdDLVRgeitfPNPNLRDPVLYR-------ADG-----YPTYNFAVVVDDHLMGITHVIRGeehlsnTPRQI------ 217
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 485 WIIEALGIRKPyiwEYSRLNL----NNTVLSKRKltwfvneGLVdgwddprfpTVRGVLRRGMTVEGLKQFIAAQGSSRS 560
Cdd:COG0008  218 WLYEALGWEPP---EFAHLPLilgpDGTKLSKRK-------GAV---------TVSGLRRRGYLPEAIRNYLALLGWSKS 278
WEPRS_RNA cd00936
WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote ...
810-859 3.27e-25

WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.


Pssm-ID: 238473 [Multi-domain]  Cd Length: 50  Bit Score: 98.85  E-value: 3.27e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 585187043 810 LYNRVAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPG 859
Cdd:cd00936    1 LYKKIAAQGDLVRELKAKKAPKEEIDAAVKKLLALKADYKEATGQDYKPG 50
WHEP-TRS pfam00458
WHEP-TRS domain;
810-862 1.03e-24

WHEP-TRS domain;


Pssm-ID: 459819 [Multi-domain]  Cd Length: 53  Bit Score: 97.57  E-value: 1.03e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 585187043  810 LYNRVAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPP 862
Cdd:pfam00458   1 LTEKIKAQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKALTGKDYKPGAAP 53
WHEP-TRS smart00991
A conserved domain of 46 amino acids, called WHEP-TRS has been shown.to exist in a number of ...
811-863 1.39e-22

A conserved domain of 46 amino acids, called WHEP-TRS has been shown.to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases; This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.


Pssm-ID: 214960 [Multi-domain]  Cd Length: 56  Bit Score: 91.63  E-value: 1.39e-22
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 585187043   811 YNRVAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPPA 863
Cdd:smart00991   1 EEAVAAQGELVRKLKAEKASKDEIDAAVAKLLALKAQLKEATGQDYKPGAPPG 53
ProRS-C_1 pfam09180
Prolyl-tRNA synthetase, C-terminal; Members of this family are predominantly found in ...
891-974 1.97e-15

Prolyl-tRNA synthetase, C-terminal; Members of this family are predominantly found in prokaryotic prolyl-tRNA synthetase. They contain a zinc binding site, and adopt a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif.


Pssm-ID: 462709  Cd Length: 67  Bit Score: 71.40  E-value: 1.97e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  891 EVVRKLKAEKapkIAQIPFCGEIDCEDWIKKTTardqdlepgapsmGAKSLCVPFKplcELQPGARCV-CGRNaAKYYTL 969
Cdd:pfam09180   3 EFKEALEEKG---FVLAPWCGDEECEDKIKEET-------------GATSRCIPFD---QEEEGGKCIvCGKP-AKKWVL 62

                  ....*
gi 585187043  970 FGRSY 974
Cdd:pfam09180  63 FARSY 67
ProRS-C_1 smart00946
Prolyl-tRNA synthetase, C-terminal; Members of this family are predominantly found in ...
903-974 2.42e-15

Prolyl-tRNA synthetase, C-terminal; Members of this family are predominantly found in prokaryotic prolyl-tRNA synthetase. They contain a zinc binding site, and adopt a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif.


Pssm-ID: 198014  Cd Length: 67  Bit Score: 71.45  E-value: 2.42e-15
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 585187043   903 KIAQIPFCGEIDCEDWIKKTTardqdlepgapsmGAKSLCVPFKplcELQPGARCVCGRNAAKYYTLFGRSY 974
Cdd:smart00946  12 KFVLAPWCGDEECEEKIKEET-------------GATIRCIPFD---QDEEPGKCVVCGKPAKKWVLFARSY 67
ProRS_anticodon_zinc cd00862
ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and ...
903-974 5.18e-11

ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.


Pssm-ID: 238439 [Multi-domain]  Cd Length: 202  Bit Score: 63.09  E-value: 5.18e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 585187043 903 KIAQIPFCGEIDCEDWIKKTTArdqdlepgapsmgAKSLCVPFkPLCELQPGARCV-CGRNaAKYYTLFGRSY 974
Cdd:cd00862  145 GIVLAPWCGEEECEEEIKEETA-------------ATILCIPF-DEAKLEEGGKCVvCGRP-AKAYARFAKSY 202
PLN02734 PLN02734
glycyl-tRNA synthetase
814-851 2.84e-05

glycyl-tRNA synthetase


Pssm-ID: 178335 [Multi-domain]  Cd Length: 684  Bit Score: 48.20  E-value: 2.84e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 585187043 814 VAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEK 851
Cdd:PLN02734  16 VTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSAL 53
 
Name Accession Description Interval E-value
PLN02907 PLN02907
glutamate-tRNA ligase
90-765 0e+00

glutamate-tRNA ligase


Pssm-ID: 215492 [Multi-domain]  Cd Length: 722  Bit Score: 837.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  90 PPLGALLA--VEHVKDDVSISLEEGKENILYVSENVVFTDINSILRYLARVATTTGLYGSNLLEHTEIDHWLEFSATkLS 167
Cdd:PLN02907  12 PPLAVIAAakVAGVPLTIDPSLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLPGFYGQDAFESSQVDEWLDYAPT-FS 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 168 SCNLFTSAINELNHCLSLRTYLVGNSLSLADLCVWATLKGSAAWQEQLKQNKAPVHVKRWFGFLEAQ------QAFQSVG 241
Cdd:PLN02907  91 SGSEFENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEysdilnEVTAAYV 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 242 TKWNVSTTKAKVTPEKKQDVGKF----------VELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIM 311
Cdd:PLN02907 171 GKRGAGKPAAAKSKEKVADAGKAdgakdkgsfeVDLPGAEEGKVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIV 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 312 RFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFESIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRKN 391
Cdd:PLN02907 251 RFDDTNPSKESDEFVENILKDIETLGIKYDAVTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNN 330
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 392 SIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHAL 471
Cdd:PLN02907 331 SVEENLRLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHAL 410
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 472 RTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQF 551
Cdd:PLN02907 411 RSSEYHDRNAQYYRILEDMGLRKVHIWEFSRLNFVYTLLSKRKLQWFVDNGKVEGWDDPRFPTVQGIVRRGLKIEALKQF 490
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 552 IAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPV---NIPEaQEEMKEVAKHPKNPDVGLKPVWYSPKVF 628
Cdd:PLN02907 491 ILSQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVLKEGRVLLtltDGPE-TPFVRIIPRHKKYEGAGKKATTFTNRIW 569
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 629 IEGADAETLSEGEMVTFINWGNINITKINKNADGKIVSLDAKLNLENkDYKKTT-KITWLAETAHALPIPaiCVTYEHLI 707
Cdd:PLN02907 570 LDYADAEAISEGEEVTLMDWGNAIIKEITKDEGGAVTALSGELHLEG-SVKTTKlKLTWLPDTNELVPLS--LVEFDYLI 646
                        650       660       670       680       690
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 585187043 708 TKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVS 765
Cdd:PLN02907 647 TKKKLEEDDNFLDVLNPCTKKETAALGDSNMRNLKRGEIIQLERKGYYRCDAPFVRSS 704
PLN03233 PLN03233
putative glutamate-tRNA ligase; Provisional
267-761 0e+00

putative glutamate-tRNA ligase; Provisional


Pssm-ID: 178772 [Multi-domain]  Cd Length: 523  Bit Score: 581.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 267 LPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYT 346
Cdd:PLN03233   4 LEGAIAGQIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDLGKIEIKPDSVSFT 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 347 SDHFESIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRKNSIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNG 426
Cdd:PLN03233  84 SDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSDNG 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 427 CMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLN 506
Cdd:PLN03233 164 TLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALGLRRPRIHAFARMNFM 243
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 507 NTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVA 586
Cdd:PLN03233 244 NTVLSKRKLTWFVDNGHVTGWDDARFPTIRGISRRGIDIDALKMFMCSQGASRRVVNLDWAKFWAENKKEIDKRAKRFMA 323
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 587 LLKKEVIPVNIPEAQEE----MKEVAKHPKNPDVGLKPVWYSPKVFIEGADAETLSEGEMVTFINWGNINITKINKNADG 662
Cdd:PLN03233 324 IDKADHTALTVTNADEEadfaFSETDCHPKDPGFGKRAMRICDEVLLEKADTEDIQLGEDIVLLRWGVIEISKIDGDLEG 403
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 663 KIVSldaklnleNKDYKKTT-KITWLAETAHAlpIPAICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDL 741
Cdd:PLN03233 404 HFIP--------DGDFKAAKkKISWIADVSDN--IPVVLSEFDNLIIKEKLEEDDKFEDFINPDTLAETDVIGDAGLKTL 473
                        490       500
                 ....*....|....*....|
gi 585187043 742 KKGDIIQLQRRGFFICDQPY 761
Cdd:PLN03233 474 KEHDIIQLERRGFYRVDRPY 493
PTZ00402 PTZ00402
glutamyl-tRNA synthetase; Provisional
265-758 0e+00

glutamyl-tRNA synthetase; Provisional


Pssm-ID: 240404 [Multi-domain]  Cd Length: 601  Bit Score: 551.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 265 VELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQF- 343
Cdd:PTZ00402  43 LQLTNAEEGKVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDLATLGVSWDVGp 122
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 344 TYTSDHFESIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRKNSIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSS 423
Cdd:PTZ00402 123 TYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDN 202
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 424 NNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRL 503
Cdd:PTZ00402 203 ENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALGIRKPIVEDFSRL 282
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 504 NLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPR 583
Cdd:PTZ00402 283 NMEYSVMSKRKLTQLVDTHVVDGWDDPRFPTVRALVRRGLKMEALRQFVQEQGMSKTVNFMEWSKLWYFNTQILDPSVPR 362
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 584 YVALLKKEVIPVNIpEAQEEMKEVAK--HPKNPDVGLKPVWYSPKVFIEGADAETLSEGEMVTFINWGNINITKINK-NA 660
Cdd:PTZ00402 363 YTVVSNTLKVRCTV-EGQIHLEACEKllHKKVPDMGEKTYYKSDVIFLDAEDVALLKEGDEVTLMDWGNAYIKNIRRsGE 441
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 661 DGKIVSLDAKLNLENkDYKKTT-KITWLAETAHALPIPaiCVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLK 739
Cdd:PTZ00402 442 DALITDADIVLHLEG-DVKKTKfKLTWVPESPKAEVME--LNEYDHLLTKKKPDPEESIDDIIAPVTKYTQEVYGEEALS 518
                        490
                 ....*....|....*....
gi 585187043 740 DLKKGDIIQLQRRGFFICD 758
Cdd:PTZ00402 519 VLKKGDIIQLERRGYYIVD 537
tRNA-synt_1c pfam00749
tRNA synthetases class I (E and Q), catalytic domain; Other tRNA synthetase sub-families are ...
274-579 7.51e-162

tRNA synthetases class I (E and Q), catalytic domain; Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organizms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).


Pssm-ID: 395606 [Multi-domain]  Cd Length: 314  Bit Score: 477.20  E-value: 7.51e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  274 KVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPD-QFTYTSDHFES 352
Cdd:pfam00749   1 KVRTRFAPSPTGYLHIGHAKAALFNYLYAKNHNGKFILRFEDTDPERETPEFEESILEDLKWLGIKWDyGPYYQSDRFDI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  353 IMKYAEKLIQEGKAYVDDTPAEQMKAEREQ--RIESKHRKNSIEKNLQMW-EEMKKGSQFGQSCCLRAKIDMSSnNGCMR 429
Cdd:pfam00749  81 YYKYAEELIKKGKAYVCFCTPEELEEEREEqeALGSPSRDRYDEENLHLFeEEMKKGSAEGGPATVRAKIPMES-PYVFR 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  430 DPTLYRCKIQP---HPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIR-KPYIWEYSRLNL 505
Cdd:pfam00749 160 DPVRGRIKFTPqeiHDRTGVKWDGYPTYDFAVVIDDHLMGITHVLRTEEFLDNTPKYIWIYDALGWEpPPFIHEYLRLNL 239
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 585187043  506 NNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSV-VNMEWDKIWAFNKKVIDP 579
Cdd:pfam00749 240 DGTKLSKRKLSWSVDISQVKGWGDPREATLNGLRRRGWTPEGIREFFTREGVIKSFdVNRLSKSLEAFDRKKLDW 314
gltX_arch TIGR00463
glutamyl-tRNA synthetase, archaeal and eukaryotic family; The glutamyl-tRNA synthetases of the ...
218-763 1.98e-151

glutamyl-tRNA synthetase, archaeal and eukaryotic family; The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This model models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases, including all known archaeal enzymes (as of 2010) may act on both tRNA(gln) and tRNA(glu). [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273091 [Multi-domain]  Cd Length: 556  Bit Score: 459.67  E-value: 1.98e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  218 NKAPVHVKRWFGFLEAQQAFQSVGTKWNVS----TTKAKVTPEKKQDVGKF-VELPGAEMGKVTVRFPPEASGYLHIGHA 292
Cdd:TIGR00463  32 NNPELRKKAKEVLEAVEAAVEEVNSLSPEEqkelMKRLGLDIKKKEKKRKGlRELPGAKMGEVVMRFAPNPSGPLHIGHA 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  293 KAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFESIMKYAEKLIQEGKAYVDDTP 372
Cdd:TIGR00463 112 RAAILNHEYAKKYDGKLIIRFDDTDPRRVDPEAYDMILEDLEWLGVKWDEVVYQSDRIETYYDYTRKLIEMGKAYVCDCR 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  373 AEQMKAEREQRIESKHRKNSIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYP 452
Cdd:TIGR00463 192 PEEFRELRNRGEACHCRDRSVEENLERWEEMLEGKEEGGSVVVRVKTDLKHKNPAIRDWVIFRIVKTPHPRTGDKYRVYP 271
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  453 TYDFACPIVDSIEGVTHALRTTEYHD--RDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVnEGLVDGWDDP 530
Cdd:TIGR00463 272 TMDFSVAIDDHLLGVTHVLRGKDHIDnrRKQEYIYRYFGWEPPEFIHWGRLKIDDVRALSTSSARKGIL-RGEYSGWDDP 350
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  531 RFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLK-KEVIPVNIPEAQEEMKevAK 609
Cdd:TIGR00463 351 RLPTLRAIRRRGIRPEAIRKFMLSIGVKINDVTMSWKNIYALNRKIIDEEARRYFFIWNpVKIEIVGLPEPKRVER--PL 428
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  610 HPKNPDVGLKPVWYSPKVFIEGADAETLSegEMVTFINWGNINITKINknadgkivSLDAKLNLENKDYKKTTKITWLAE 689
Cdd:TIGR00463 429 HPDHPEIGERVLILRGEIYVPKDDLEEGV--EPVRLMDAVNVIYSKKE--------LRYHSEGLEGARKLGKSIIHWLPA 498
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 585187043  690 TAhalPIPAICVTYEHLITKPVLGKDEDFkqyvnknskheelmlgdpclkdLKKGDIIQLQRRGFFICDQPYEP 763
Cdd:TIGR00463 499 KD---AVKVKVIMPDASIVEGVIEADASE----------------------LEVGDVVQFERFGFARLDSADKD 547
PRK05347 PRK05347
glutaminyl-tRNA synthetase; Provisional
273-763 2.73e-143

glutaminyl-tRNA synthetase; Provisional


Pssm-ID: 235424 [Multi-domain]  Cd Length: 554  Bit Score: 438.38  E-value: 2.73e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 273 GKVTVRFPPEASGYLHIGHAKAALLN----QHYQvnfkGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKP-DQFTYTS 347
Cdd:PRK05347  28 TRVHTRFPPEPNGYLHIGHAKSICLNfglaQDYG----GKCNLRFDDTNPEKEDQEYVDSIKEDVRWLGFDWsGELRYAS 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 348 DHFESIMKYAEKLIQEGKAYVDDTPAEQMkaeREQR-------IESKHRKNSIEKNLQMWEEMKKGsQF--GqSCCLRAK 418
Cdd:PRK05347 104 DYFDQLYEYAVELIKKGKAYVDDLSAEEI---REYRgtltepgKNSPYRDRSVEENLDLFERMRAG-EFpeG-SAVLRAK 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 419 IDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHD-RdeQFY-WIIEALGIR-KP 495
Cdd:PRK05347 179 IDMASPNINMRDPVLYRIRHAHHHRTGDKWCIYPMYDFAHCISDAIEGITHSLCTLEFEDhR--PLYdWVLDNLPIPpHP 256
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 496 YIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSR--SVVNM---Ewdkiw 570
Cdd:PRK05347 257 RQYEFSRLNLTYTVMSKRKLKQLVEEKHVDGWDDPRMPTISGLRRRGYTPESIREFCERIGVTKqdSVIDMsmlE----- 331
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 571 AFNKKVIDPVAPRYVALLK--KEVIpVNIPEAQEEMKEVAKHPKNPDVGLKPVWYSPKVFIEGAD-AET-------LSEG 640
Cdd:PRK05347 332 SCIREDLNENAPRAMAVLDplKLVI-TNYPEGQVEELEAPNHPEDPEMGTREVPFSRELYIEREDfMEEppkkyfrLVPG 410
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 641 EMVTFINWGNINITKINKNADGKIVSL------DAKLNLENKDYK-KTTkITWLaETAHAlpIPAICVTYEHLITKPVLG 713
Cdd:PRK05347 411 KEVRLRNAYVIKCEEVVKDADGNITEIhctydpDTLSGNPADGRKvKGT-IHWV-SAAHA--VPAEVRLYDRLFTVPNPA 486
                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|
gi 585187043 714 KDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEP 763
Cdd:PRK05347 487 AGKDFLDFLNPDSLVIKQGFVEPSLADAKPEDRFQFEREGYFCADKDSTP 536
GlnRS_core cd00807
catalytic core domain of glutaminyl-tRNA synthetase; Glutaminyl-tRNA synthetase (GlnRS) ...
274-583 4.13e-139

catalytic core domain of glutaminyl-tRNA synthetase; Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.


Pssm-ID: 185676 [Multi-domain]  Cd Length: 238  Bit Score: 415.50  E-value: 4.13e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 274 KVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFESI 353
Cdd:cd00807    1 KVVTRFPPEPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYKVTYASDYFDQL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 354 MKYAEKLIQEGKAYVddtpaeqmkaereqrieskhrknsieknlqmweemkkgsqfgqscclrakidmssnngcmrdptl 433
Cdd:cd00807   81 YEYAEQLIKKGKAYV----------------------------------------------------------------- 95
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 434 yrckiqpHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKR 513
Cdd:cd00807   96 -------HHRTGDKWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDALRLYRPHQWEFSRLNLTYTVMSKR 168
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 514 KLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPR 583
Cdd:cd00807  169 KLLQLVDEGYVDGWDDPRLPTLRGLRRRGVTPEAIRQFILRQGVSKADSTIDWDKLEACVRKDLNPTAPR 238
glnS TIGR00440
glutaminyl-tRNA synthetase; This protein is a relatively rare aminoacyl-tRNA synthetase, found ...
275-758 6.67e-112

glutaminyl-tRNA synthetase; This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases. [Protein synthesis, tRNA aminoacylation]


Pssm-ID: 273079 [Multi-domain]  Cd Length: 522  Bit Score: 355.38  E-value: 6.67e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  275 VTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPD-QFTYTSDHFESI 353
Cdd:TIGR00440   1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVEWLGFKWEgKIRYSSDYFDEL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  354 MKYAEKLIQEGKAYVDDTPAEQMKAEREQRIE----SKHRKNSIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMR 429
Cdd:TIGR00440  81 YRYAEELIKKGLAYVDELTPEEIREYRGTLTDpgknSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  430 DPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGI-RKPYIWEYSRLNLNNT 508
Cdd:TIGR00440 161 DPVAYRIKFAPHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIfPRPAQYEFSRLNLEGT 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  509 VLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALL 588
Cdd:TIGR00440 241 VLSKRKLAQLVDDKFVRGWDDPRMPTISGLRRRGYTPASIREFCNRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVI 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  589 KKEVIPVNIPEAQEEMKEVAKHPKNPDVGLKPVWYSPKVFIEGADAET--------LSEGEMVTFINWGNINITKINKNA 660
Cdd:TIGR00440 321 DPVEVVIENLSDEYELATIPNHPNTPEFGERQVPFTNEFYIDRADFREeankqykrLVLGKEVRLRNAYVIKAERVEKDA 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  661 DGKIVSL----DAK-LNLENKDYKKT-TKITWLAeTAHALPIPAicVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLG 734
Cdd:TIGR00440 401 AGKITTIfctyDNKtLGKEPADGRKVkGVIHWVS-ASSKYPTET--RLYDRLFKVPNPGAPDDFLSVINPESLVIKQGFM 477
                         490       500
                  ....*....|....*....|....
gi 585187043  735 DPCLKDLKKGDIIQLQRRGFFICD 758
Cdd:TIGR00440 478 EHSLGDAVANKRFQFEREGYFCLD 501
PRK14703 PRK14703
glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
273-803 2.86e-103

glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional


Pssm-ID: 237793 [Multi-domain]  Cd Length: 771  Bit Score: 340.16  E-value: 2.86e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 273 GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIK-PDQFTYTSDHFE 351
Cdd:PRK14703  30 PRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDDVRWLGFDwGEHLYYASDYFE 109
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 352 SIMKYAEKLIQEGKAYVDDTPAEQMkaeREQR-------IESKHRKNSIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSN 424
Cdd:PRK14703 110 RMYAYAEQLIKMGLAYVDSVSEEEI---RELRgtvtepgTPSPYRDRSVEENLDLFRRMRAGEFPDGAHVLRAKIDMSSP 186
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 425 NGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIR--KPYIWEYSR 502
Cdd:PRK14703 187 NMKLRDPLLYRIRHAHHYRTGDEWCIYPMYDFAHPLEDAIEGVTHSICTLEFENNRAIYDWVLDHLGPWppRPRQYEFAR 266
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 503 LNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAP 582
Cdd:PRK14703 267 LALGYTVMSKRKLRELVEEGYVSGWDDPRMPTIAGQRRRGVTPEAIRDFADQIGVAKTNSTVDIGVLEFAIRDDLNRRAP 346
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 583 RYVALLKK-EVIPVNIPEAQEEMKEVAKHPKN-PDVGLKPVWYSPKVFIEGAD-AET-------LSEGEMVTFINWGNIN 652
Cdd:PRK14703 347 RVMAVLDPlKVVIENLPAGKVEELDLPYWPHDvPKEGSRKVPFTRELYIERDDfSEDppkgfkrLTPGREVRLRGAYIIR 426
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 653 ITKINKNADGKIVSLDAKLNLENKDYKKTTK-----ITWLAeTAHALPIPAicVTYEHLITKPVL-GKDEDFKQYVNKNS 726
Cdd:PRK14703 427 CDEVVRDADGAVTELRCTYDPESAKGEDTGRkaagvIHWVS-AKHALPAEV--RLYDRLFKVPQPeAADEDFLEFLNPDS 503
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 727 KHEELMLGDPCLKDLKKGDIIQLQRRGFFICD----QPYEPV---------SASERRGSERRARIGTARmwPTTPFKERP 793
Cdd:PRK14703 504 LRVAQGRVEPAVRDDPADTRYQFERQGYFWADpvdsRPDALVfnriitlkdTWGARAREAAREKRAAAP--KKTAKPRRS 581
                        570
                 ....*....|
gi 585187043 794 GPSLDNTCAP 803
Cdd:PRK14703 582 KAEARAEAAA 591
PTZ00437 PTZ00437
glutaminyl-tRNA synthetase; Provisional
273-763 5.29e-103

glutaminyl-tRNA synthetase; Provisional


Pssm-ID: 240418 [Multi-domain]  Cd Length: 574  Bit Score: 333.49  E-value: 5.29e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 273 GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFES 352
Cdd:PTZ00437  50 GKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAIMEMVKWMGWKPDWVTFSSDYFDQ 129
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 353 IMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRKNSIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPT 432
Cdd:PTZ00437 130 LHEFAVQLIKDGKAYVDHSTPDELKQQREQREDSPWRNRSVEENLLLFEHMRQGRYAEGEATLRVKADMKSDNPNMRDFI 209
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 433 LYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSK 512
Cdd:PTZ00437 210 AYRVKYVEHPHAKDKWCIYPSYDFTHCLIDSLEDIDYSLCTLEFETRRESYFWLLEELNLWRPHVWEFSRLNVTGSLLSK 289
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 513 RKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLkkEV 592
Cdd:PTZ00437 290 RKINVLVRKGIVRGFDDPRLLTLAGMRRRGYTPAAINRFCELVGITRSMNVIQISMLENTLREDLDERCERRLMVI--DP 367
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 593 IPVNIPEAQEEMK-EVAKHPKNPDVGLKPVWYSPKVFIEGADAET---------LSEGEMVTFINW-GNINITKINKNAD 661
Cdd:PTZ00437 368 IKVVVDNWKGEREfECPNHPRKPELGSRKVMFTDTFYVDRSDFRTednnskfygLAPGPRVVGLKYsGNVVCKGFEVDAA 447
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 662 GKIVSLDAKLNLENKDyKKTTKITWLAETAhalPIPAICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDL 741
Cdd:PTZ00437 448 GQPSVIHVDIDFERKD-KPKTNISWVSATA---CTPVEVRLYNALLKDDRAAIDPEFLKFIDEDSEVVSHGYAEKGIENA 523
                        490       500
                 ....*....|....*....|..
gi 585187043 742 KKGDIIQLQRRGFFICDQPYEP 763
Cdd:PTZ00437 524 KHFESVQAERFGYFVVDPDTRP 545
PLN02859 PLN02859
glutamine-tRNA ligase
237-763 1.98e-102

glutamine-tRNA ligase


Pssm-ID: 178450 [Multi-domain]  Cd Length: 788  Bit Score: 338.27  E-value: 1.98e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 237 FQSVGTKWNVSTTKAKVTPEKKqdvgkfvelpgAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDT 316
Cdd:PLN02859 238 FFSDGSVLRPSNTKEILEKHLK-----------ATGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT 306
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 317 NPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFESIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRKNSIEKN 396
Cdd:PLN02859 307 NPEAEKKEYIDHIEEIVEWMGWEPFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEES 386
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 397 LQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEY 476
Cdd:PLN02859 387 LKLFEDMRRGLIEEGKATLRMKQDMQNDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEF 466
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 477 HDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQG 556
Cdd:PLN02859 467 ETRRASYYWLLDSLGLYQPYVWEYSRLNVTNTVMSKRKLNRLVTEKYVDGWDDPRLLTLAGLRRRGVTPTAINAFCRGIG 546
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 557 SSRS---VVNMewDKIWAFNKKVIDPVAPRYVALLKK-EVIPVNIPEAQEEMKEVAKHPKNPDVGLKP---VWYSPKVFI 629
Cdd:PLN02859 547 ITRSdnsLIRM--DRLEHHIREELNKTAPRTMVVLHPlKVVITNLESGEVIELDAKRWPDAQNDDPSAfykVPFSRVVYI 624
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 630 EGADAET--------LSEGEMVTFINWGNINITK-INKNADGKIVSLDAKLnlenkDYKKTTK----ITWLAETAHAL-P 695
Cdd:PLN02859 625 ERSDFRLkdskdyygLAPGKSVLLRYAFPIKCTDvVLADDNETVVEIRAEY-----DPEKKTKpkgvLHWVAEPSPGVeP 699
                        490       500       510       520       530       540       550
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 585187043 696 IPAICVTYEHLITKPVLGKDEDFKQYVNKNSKheELMLGD---PCLKDLKKGDIIQLQRRGFFICDQPYEP 763
Cdd:PLN02859 700 LKVEVRLFDKLFLSENPAELEDWLEDLNPQSK--EVISGAyavPSLKDAKVGDRFQFERLGYFAVDKDSTP 768
gltX PRK04156
glutamyl-tRNA synthetase; Provisional
256-754 1.49e-100

glutamyl-tRNA synthetase; Provisional


Pssm-ID: 235229 [Multi-domain]  Cd Length: 567  Bit Score: 326.42  E-value: 1.49e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 256 EKKQDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFE--KVILEDV 333
Cdd:PRK04156  83 EKKEEKKGLPPLPNAEKGKVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEayDMILEDL 162
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 334 AMLHIKPDQFTYTSDHFESIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESKHRKNSIEKNLQMWEEMKKGSQFGQSC 413
Cdd:PRK04156 163 KWLGVKWDEVVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEA 242
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 414 CLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIR 493
Cdd:PRK04156 243 VVRVKTDLEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWE 322
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 494 KPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFN 573
Cdd:PRK04156 323 YPETIHYGRLKIEGFVLSTSKIRKGIEEGEYSGWDDPRLPTLRALRRRGILPEAIRELIIEVGVKETDATISWENLYAIN 402
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 574 KKVIDPVAPRYVALlkKEVIPVNIPEAQEEMKEVAKHPKNPDVGLKPVWYSPKVFIEGADAETLseGEMVTFINWGNINI 653
Cdd:PRK04156 403 RKLIDPIANRYFFV--RDPVELEIEGAEPLEAKIPLHPDRPERGEREIPVGGKVYVSSDDLEAE--GKMVRLMDLFNVEI 478
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 654 TKINKNAdGKIVSLDaklnLENKDYKKTTKITWLAETaHALPIPAIcvtyehlitKPVLGKDEDFkqyvnknskheelml 733
Cdd:PRK04156 479 TGVSVDK-ARYHSDD----LEEARKNKAPIIQWVPED-ESVPVRVL---------KPDGGDIEGL--------------- 528
                        490       500
                 ....*....|....*....|.
gi 585187043 734 GDPCLKDLKKGDIIQLQRRGF 754
Cdd:PRK04156 529 AEPDVADLEVDDIVQFERFGF 549
GlnS COG0008
Glutamyl- or glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; ...
273-560 2.08e-64

Glutamyl- or glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Glutamyl- or glutaminyl-tRNA synthetase is part of the Pathway/BioSystem: Heme biosynthesis


Pssm-ID: 439779 [Multi-domain]  Cd Length: 467  Bit Score: 225.06  E-value: 2.08e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 273 GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQ-FTYTSDHFE 351
Cdd:COG0008    3 MKVRTRFAPSPTGYLHIGHARTALFNWLFARKYGGKFILRIEDTDPERSTEEAVDAILEDLRWLGLDWDEgPYYQSDRFD 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 352 SIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIESK--------HRKNSIEKNLQMWEEmkkgsqfGQSCCLRAKI---- 419
Cdd:COG0008   83 IYYEYAEKLIEKGKAYVCFCTPEELEALRETQTAPGkpprydgrCRDLSPEELERMLAA-------GEPPVLRFKIpeeg 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 420 ----DMSS-----NNGCMRDPTLYRckiqphpRTGnkynvYPTYDFACPIVDSIEGVTHALRT------TEYHDrdeqfy 484
Cdd:COG0008  156 vvfdDLVRgeitfPNPNLRDPVLYR-------ADG-----YPTYNFAVVVDDHLMGITHVIRGeehlsnTPRQI------ 217
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 485 WIIEALGIRKPyiwEYSRLNL----NNTVLSKRKltwfvneGLVdgwddprfpTVRGVLRRGMTVEGLKQFIAAQGSSRS 560
Cdd:COG0008  218 WLYEALGWEPP---EFAHLPLilgpDGTKLSKRK-------GAV---------TVSGLRRRGYLPEAIRNYLALLGWSKS 278
GluRS_non_core cd09287
catalytic core domain of non-discriminating glutamyl-tRNA synthetase; Non-discriminating ...
274-583 1.16e-62

catalytic core domain of non-discriminating glutamyl-tRNA synthetase; Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.


Pssm-ID: 185682 [Multi-domain]  Cd Length: 240  Bit Score: 212.21  E-value: 1.16e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 274 KVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFE--KVILEDVAMLHIKPDQFTYTSDHFE 351
Cdd:cd09287    1 KVVMRFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTDPRTKRPDPEayDMIPEDLEWLGVKWDEVVIASDRIE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 352 SIMKYAEKLIQEGKAYVddtpaeqmkaereqrieskhrknsieknlqmweemkkgsqfgqscclrakidmssnngcmrdp 431
Cdd:cd09287   81 LYYEYARKLIEMGGAYV--------------------------------------------------------------- 97
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 432 tlyrckiqpHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLS 511
Cdd:cd09287   98 ---------HPRTGSKYRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYEYFGWEYPETIHWGRLKIEGGKLS 168
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 585187043 512 KRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPR 583
Cdd:cd09287  169 TSKIRKGIESGEYEGWDDPRLPTLRALRRRGIRPEAIRDFIIEVGVKQTDATISWENLYAINRKLIDPRANR 240
tRNA-synt_1c_C pfam03950
tRNA synthetases class I (E and Q), anti-codon binding domain; Other tRNA synthetase ...
581-758 5.14e-48

tRNA synthetases class I (E and Q), anti-codon binding domain; Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organizms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).


Pssm-ID: 427609 [Multi-domain]  Cd Length: 175  Bit Score: 168.60  E-value: 5.14e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  581 APRYVALLKKEVIPV-NIPEAQEEMKEVAKHPKNPDVGLKPVWYSPKVFIEGADAETLSEGEMVTFINWGNINITKINKN 659
Cdd:pfam03950   1 APRYMAVLDPVKVVIeNYPEGQEETAEVPNHPKNPELGTRKVPFSREIYIEREDFKRLAPGEEVRLMDAYNIKVTEVVKD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  660 ADGKIVSLDAKLNLENKDY---KKTTKITWLAETAhalPIPAICVTYEHLITkpvlgKDEDFKQYVNKNSKHE-ELMLGD 735
Cdd:pfam03950  81 EDGNVTELHCTYDGDDLGGarkVKGKIIHWVSASD---AVPAEVRLYDRLFK-----DEDDADFLLNPDSLKVlTEGLAE 152
                         170       180
                  ....*....|....*....|...
gi 585187043  736 PCLKDLKKGDIIQLQRRGFFICD 758
Cdd:pfam03950 153 PALANLKPGDIVQFERIGYFRVD 175
GST_C_GluProRS_N cd10309
Glutathione S-transferase C-terminal-like, alpha helical domain of bifunctional ...
151-234 2.31e-38

Glutathione S-transferase C-terminal-like, alpha helical domain of bifunctional Glutamyl-Prolyl-tRNA synthetase; Glutathione S-transferase (GST) C-terminal domain family, bifunctional GluRS-Prolyl-tRNA synthetase (GluProRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of GluProRS from higher eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. The GST_C-like domain of GluProRS may be involved in protein-protein interactions, mediating the formation of the multi-aaRS complex in higher eukaryotes. The multi-aaRS complex acts as a molecular hub for protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain.


Pssm-ID: 198342 [Multi-domain]  Cd Length: 81  Bit Score: 137.45  E-value: 2.31e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 151 EHTEIDHWLEFSATKLSSCNLFTSAINELNHCLSLRTYLVGNSLSLADLCVWATLKGSAAWQEqlkQNKAPVHVKRWFGF 230
Cdd:cd10309    1 EQTEVDHWISFSAGRLSCDQDFSSALSYLDKALSLRTYLVGNSLTLADFAVWAALRGNGEWLA---SKEKYVNVTRWFKF 77

                 ....
gi 585187043 231 LEAQ 234
Cdd:cd10309   78 ISSQ 81
GlxRS_core cd00418
catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase; Glutamyl-tRNA ...
274-559 1.22e-37

catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase; Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon binding domains.


Pssm-ID: 185672 [Multi-domain]  Cd Length: 230  Bit Score: 141.07  E-value: 1.22e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 274 KVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQ-FTYTSDHFES 352
Cdd:cd00418    1 TVVTRFAPSPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEgPYRQSDRFDL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 353 IMKYAEKLIQEGkayvddtpaeqmkaereqrieskhrknsieknlqmweemkkgsqfgqscclrakidmssnngcmrdpt 432
Cdd:cd00418   81 YRAYAEELIKKG-------------------------------------------------------------------- 92
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 433 lyrckiqphprtgnkynVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNL-NNTVLS 511
Cdd:cd00418   93 -----------------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALGWEPPRFYHFPRLLLeDGTKLS 155
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 585187043 512 KRKLtwfvneglvdgwddprFPTVRGVLRRGMTVEGLKQFIAAQGSSR 559
Cdd:cd00418  156 KRKL----------------NTTLRALRRRGYLPEALRNYLALIGWSK 187
WEPRS_RNA cd00936
WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote ...
810-859 3.27e-25

WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.


Pssm-ID: 238473 [Multi-domain]  Cd Length: 50  Bit Score: 98.85  E-value: 3.27e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 585187043 810 LYNRVAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPG 859
Cdd:cd00936    1 LYKKIAAQGDLVRELKAKKAPKEEIDAAVKKLLALKADYKEATGQDYKPG 50
WHEP-TRS pfam00458
WHEP-TRS domain;
810-862 1.03e-24

WHEP-TRS domain;


Pssm-ID: 459819 [Multi-domain]  Cd Length: 53  Bit Score: 97.57  E-value: 1.03e-24
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 585187043  810 LYNRVAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPP 862
Cdd:pfam00458   1 LTEKIKAQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKALTGKDYKPGAAP 53
GST_C_AaRS_like cd10289
Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA ...
151-234 3.23e-23

Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA synthetases and similar domains; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl-tRNA synthetase (AaRS)-like subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of some eukaryotic AaRSs, as well as similar domains found in proteins involved in protein synthesis including Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2 (AIMP2), AIMP3, and eukaryotic translation Elongation Factor 1 beta (eEF1b). AaRSs comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. AaRSs in this subfamily include GluRS from lower eukaryotes, as well as GluProRS, MetRS, and CysRS from higher eukaryotes. AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex found in higher eukaryotes. The GST_C-like domain is involved in protein-protein interactions, mediating the formation of aaRS complexes such as the MetRS-Arc1p-GluRS ternary complex in lower eukaryotes and the multi-aaRS complex in higher eukaryotes, that act as molecular hubs for protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain.


Pssm-ID: 198322 [Multi-domain]  Cd Length: 82  Bit Score: 94.30  E-value: 3.23e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 151 EHTEIDHWLEFsATKLSSCNLFTSAINELNHCLSLRTYLVGNSLSLADLCVWATLKGSAAWQEQLKQNKaPVHVKRWFGF 230
Cdd:cd10289    1 EAAQVDQWLDL-AGSLLKGKELEALLKSLNSYLASRTFLVGYSLTLADVAVFSALYPSGQKLSDKEKKK-FPHVTRWFNH 78

                 ....
gi 585187043 231 LEAQ 234
Cdd:cd10289   79 IQNL 82
WHEP-TRS smart00991
A conserved domain of 46 amino acids, called WHEP-TRS has been shown.to exist in a number of ...
811-863 1.39e-22

A conserved domain of 46 amino acids, called WHEP-TRS has been shown.to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases; This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.


Pssm-ID: 214960 [Multi-domain]  Cd Length: 56  Bit Score: 91.63  E-value: 1.39e-22
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 585187043   811 YNRVAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEKTGQEYKPGNPPA 863
Cdd:smart00991   1 EEAVAAQGELVRKLKAEKASKDEIDAAVAKLLALKAQLKEATGQDYKPGAPPG 53
GST_C_GluRS_N cd10306
Glutathione S-transferase C-terminal-like, alpha helical domain of Glutamyl-tRNA synthetase; ...
151-233 1.69e-17

Glutathione S-transferase C-terminal-like, alpha helical domain of Glutamyl-tRNA synthetase; Glutathione S-transferase (GST) C-terminal domain family, Glutamyl-tRNA synthetase (GluRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of GluRS from lower eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. The GST_C-like domain of GluRS is involved in protein-protein interactions. This domain mediates the formation of the MetRS-Arc1p-GluRS ternary complex found in lower eukaryotes, which is considered an evolutionary intermediate between prokaryotic aaRS and the multi-aaRS complex found in higher eukaryotes. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain.


Pssm-ID: 198339 [Multi-domain]  Cd Length: 87  Bit Score: 78.16  E-value: 1.69e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 151 EHTEIDHWLEFSATKLSSCNL--FTSAINELNHCLSLRTYLVGNSLSLADLCVWATLKGSAAWQEQLKQNKAPvHVKRWF 228
Cdd:cd10306    3 DKEQVAEWIDFATTLLVLKDFkaLSQALEELDSHLTLRTFIVGYSLSLADIAVWGALRGNGVAGSLIKNKVYV-NLSRWF 81

                 ....*
gi 585187043 229 GFLEA 233
Cdd:cd10306   82 SFLES 86
WHEPGMRS_RNA cd01200
EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher ...
811-852 2.26e-17

EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.


Pssm-ID: 238605 [Multi-domain]  Cd Length: 42  Bit Score: 76.42  E-value: 2.26e-17
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 585187043 811 YNRVAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEKT 852
Cdd:cd01200    1 YEKIAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKEAT 42
ProRS-C_1 pfam09180
Prolyl-tRNA synthetase, C-terminal; Members of this family are predominantly found in ...
891-974 1.97e-15

Prolyl-tRNA synthetase, C-terminal; Members of this family are predominantly found in prokaryotic prolyl-tRNA synthetase. They contain a zinc binding site, and adopt a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif.


Pssm-ID: 462709  Cd Length: 67  Bit Score: 71.40  E-value: 1.97e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043  891 EVVRKLKAEKapkIAQIPFCGEIDCEDWIKKTTardqdlepgapsmGAKSLCVPFKplcELQPGARCV-CGRNaAKYYTL 969
Cdd:pfam09180   3 EFKEALEEKG---FVLAPWCGDEECEDKIKEET-------------GATSRCIPFD---QEEEGGKCIvCGKP-AKKWVL 62

                  ....*
gi 585187043  970 FGRSY 974
Cdd:pfam09180  63 FARSY 67
ProRS-C_1 smart00946
Prolyl-tRNA synthetase, C-terminal; Members of this family are predominantly found in ...
903-974 2.42e-15

Prolyl-tRNA synthetase, C-terminal; Members of this family are predominantly found in prokaryotic prolyl-tRNA synthetase. They contain a zinc binding site, and adopt a structure consisting of alpha helices and antiparallel beta sheets arranged in 2 layers, in a beta-alpha-beta-alpha-beta motif.


Pssm-ID: 198014  Cd Length: 67  Bit Score: 71.45  E-value: 2.42e-15
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 585187043   903 KIAQIPFCGEIDCEDWIKKTTardqdlepgapsmGAKSLCVPFKplcELQPGARCVCGRNAAKYYTLFGRSY 974
Cdd:smart00946  12 KFVLAPWCGDEECEEKIKEET-------------GATIRCIPFD---QDEEPGKCVVCGKPAKKWVLFARSY 67
PLN02627 PLN02627
glutamyl-tRNA synthetase
273-529 8.64e-14

glutamyl-tRNA synthetase


Pssm-ID: 178234 [Multi-domain]  Cd Length: 535  Bit Score: 75.16  E-value: 8.64e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 273 GKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQ--------FT 344
Cdd:PLN02627  44 GPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVLRDLKWLGLDWDEgpdvggeyGP 123
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 345 YTSDHFESIMK-YAEKLIQEGKAY---VDDTPAEQMKAEREQ-----RIESKHRKNSIEknlQMWEEMKKGSQFgqscCL 415
Cdd:PLN02627 124 YRQSERNAIYKqYAEKLLESGHVYpcfCTDEELEAMKEEAELkklppRYTGKWATASDE---EVQAELAKGTPY----TY 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 416 RAKIdmsSNNGCMRDPTLYRCKIQPHPRT-GN----KYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEAL 490
Cdd:PLN02627 197 RFRV---PKEGSVKIDDLIRGEVSWNTDTlGDfvllRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKAL 273
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 585187043 491 GIRKPyiwEYSRLNL----NNTVLSKR---------KLTWFVNEGLVD-----GWDD 529
Cdd:PLN02627 274 GFPMP---RFAHVSLilapDRSKLSKRhgatsvgqfREMGYLPDAMVNylallGWND 327
ProRS_anticodon_zinc cd00862
ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and ...
903-974 5.18e-11

ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.


Pssm-ID: 238439 [Multi-domain]  Cd Length: 202  Bit Score: 63.09  E-value: 5.18e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 585187043 903 KIAQIPFCGEIDCEDWIKKTTArdqdlepgapsmgAKSLCVPFkPLCELQPGARCV-CGRNaAKYYTLFGRSY 974
Cdd:cd00862  145 GIVLAPWCGEEECEEEIKEETA-------------ATILCIPF-DEAKLEEGGKCVvCGRP-AKAYARFAKSY 202
GST_C_AIMP3 cd10305
Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase ...
150-228 1.20e-10

Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 3; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein (AIMP) 3 subfamily; AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex that functions as a molecular hub to coordinate protein synthesis. There are three AIMPs, named AIMP1-3, which play diverse regulatory roles. AIMP3, also called p18 or eukaryotic translation elongation factor 1 epsilon-1 (EEF1E1), contains a C-terminal domain with similarity to the C-terminal alpha helical domain of GSTs. It specifically interacts with methionyl-tRNA synthetase (MetRS) and is translocated to the nucleus during DNA synthesis or in response to DNA damage and oncogenic stress. In the nucleus, it interacts with ATM and ATR, which are upstream kinase regulators of p53. It appears to work against DNA damage in cooperation with AIMP2, and similar to AIMP2, AIMP3 is also a haploinsufficient tumor suppressor. AIMP3 transgenic mice have shorter lifespans than wild-type mice and they show characteristics of progeria, suggesting that AIMP3 may also be involved in cellular and organismal aging.


Pssm-ID: 198338 [Multi-domain]  Cd Length: 101  Bit Score: 59.23  E-value: 1.20e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 150 LEHTEIDHWLEFSATKLSSC---NLFTSAINELNHCLSLRTYLVGNSLSLADLCVWATLKG-----SAAWQEQLKqnkap 221
Cdd:cd10305    2 EERAQVDQWLEYRVTQVAPAsdkADAKSLLKELNSYLQDRTYLVGHKLTLADVVLYYGLHPimkdlSPQEKEQYL----- 76

                 ....*..
gi 585187043 222 vHVKRWF 228
Cdd:cd10305   77 -NVSRWF 82
GstA COG0625
Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];
121-244 5.07e-08

Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440390 [Multi-domain]  Cd Length: 205  Bit Score: 54.13  E-value: 5.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 121 ENVVFTDINSILRYLARVATTTGLYGSNLLEHTEIDHWLEFSATKLSSC--NLFTS-------------------AINEL 179
Cdd:COG0625   59 DGLVLTESLAILEYLAERYPEPPLLPADPAARARVRQWLAWADGDLHPAlrNLLERlapekdpaaiararaelarLLAVL 138
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 585187043 180 NHCLSLRTYLVGNSLSLADLCVWATLKGSAAWQEQLKQNKapvHVKRWFGFLEAQQAFQSVGTKW 244
Cdd:COG0625  139 EARLAGGPYLAGDRFSIADIALAPVLRRLDRLGLDLADYP---NLAAWLARLAARPAFQRALAAA 200
GST_C_Arc1p_N_like cd10304
Glutathione S-transferase C-terminal-like, alpha helical domain of the Aminoacyl tRNA ...
151-246 5.46e-08

Glutathione S-transferase C-terminal-like, alpha helical domain of the Aminoacyl tRNA synthetase cofactor 1 and similar proteins; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase cofactor 1 (Arc1p)-like subfamily; Arc1p, also called GU4 nucleic binding protein 1 (G4p1) or p42, is a tRNA-aminoacylation and nuclear-export cofactor. It contains a domain in the N-terminal region with similarity to the C-terminal alpha helical domain of GSTs. This domain mediates the association of the aminoacyl tRNA synthetases (aaRSs), MetRS and GluRS, in yeast to form a stable stoichiometric ternany complex. The GST_C-like domain of Arc1p is a protein-protein interaction domain containing two binding sites which enable it to bind the two aaRSs simultaneously and independently. The MetRS-Arc1p-GluRS complex selectively recruits and aminoacylates its cognate tRNAs without additional cofactors. Arc1p also plays a role in the transport of tRNA from the nucleus to the cytoplasm. It may also control the subcellular distribution of GluRS in the cytoplasm, nucleoplasm, and the mitochondrial matrix.


Pssm-ID: 198337 [Multi-domain]  Cd Length: 100  Bit Score: 51.60  E-value: 5.46e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 151 EHTEIDHWLEFSATKLSSCNLFTSaINELNHCLSLRTYLVGNS-LSLADLCVWATLKGSAA-WQEQLKQNKAPV-HVKRW 227
Cdd:cd10304    3 QSAEVAQWLSVAKSGPVSKDVQET-LGQLNLHLRTRTFLLGTGkPSVADVAVFEAVLPVVKeWSDEVKTGYAKYrHILRW 81
                         90
                 ....*....|....*....
gi 585187043 228 FGFLEAQQAFQSVGTKWNV 246
Cdd:cd10304   82 VDYVQNLLLFIPEADKIEV 100
GST_C_AIMP2 cd03200
Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase ...
132-234 2.46e-07

Glutathione S-transferase C-terminal-like, alpha helical domain of Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein 2; Glutathione S-transferase (GST) C-terminal domain family, Aminoacyl tRNA synthetase complex-Interacting Multifunctional Protein (AIMP) 2 subfamily; AIMPs are non-enzymatic cofactors that play critical roles in the assembly and formation of a macromolecular multi-tRNA synthetase protein complex that functions as a molecular hub to coordinate protein synthesis. There are three AIMPs, named AIMP1-3, which play diverse regulatory roles. AIMP2, also called p38 or JTV-1, contains a C-terminal domain with similarity to the C-terminal alpha helical domain of GSTs. It plays an important role in the control of cell fate via antiproliferative (by enhancing the TGF-beta signal) and proapoptotic (activation of p53 and TNF-alpha) activities. Its roles in the control of cell proliferation and death suggest that it is a potent tumor suppressor. AIMP2 heterozygous mice with lower than normal expression of AIMP2 show high susceptibility to tumorigenesis. AIMP2 is also a substrate of Parkin, an E3 ubiquitin ligase that is involved in the ubiquitylation and proteasomal degradation of its substrates. Mutations in the Parkin gene is found in 50% of patients with autosomal-recessive early-onset parkinsonism. The accumulation of AIMP2, due to impaired Parkin function, may play a role in the pathogenesis of Parkinson's disease.


Pssm-ID: 198309 [Multi-domain]  Cd Length: 96  Bit Score: 49.44  E-value: 2.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 132 LRYLARVattTGLYGSNLLEHTEIDHWLEFSATKL--SSCNLFTSAINELNHCLSLRTYLVGNSLSLADLCVWATLkgsa 209
Cdd:cd03200    1 ARFLFRL---LGDESDDPVNATLIDSWVDTAIFQLleGSSKEKAAVLRALNSALGRSPWLVGSEPTVADIALWSAV---- 73
                         90       100
                 ....*....|....*....|....*
gi 585187043 210 awQEQLKQNKAPVHVKRWFGFLEAQ 234
Cdd:cd03200   74 --LQTGLASGAPANVQRWMKSCENL 96
GST_C_EF1Bgamma_like cd03181
Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of ...
151-240 3.53e-06

Glutathione S-transferase C-terminal-like, alpha helical domain of the Gamma subunit of Elongation Factor 1B and similar proteins; Glutathione S-transferase (GST) C-terminal domain family, Gamma subunit of Elongation Factor 1B (EF1Bgamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in protein biosynthesis, EF1Bgamma may also display other functions. The recombinant rice protein has been shown to possess GSH conjugating activity. The yeast EF1Bgamma binds to membranes in a calcium dependent manner and is also part of a complex that binds to the msrA (methionine sulfoxide reductase) promoter suggesting a function in the regulation of its gene expression. Also included in this subfamily is the GST_C-like domain at the N-terminus of human valyl-tRNA synthetase (ValRS) and its homologs. Metazoan ValRS forms a stable complex with Elongation Factor-1H (EF-1H), and together, they catalyze consecutive steps in protein biosynthesis, tRNA aminoacylation and its transfer to EF.


Pssm-ID: 198290 [Multi-domain]  Cd Length: 123  Bit Score: 47.17  E-value: 3.53e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 151 EHTEIDHWLEFSATKL--SSCNLF--------------TSAINELNHC-------LSLRTYLVGNSLSLADLCVWATLKG 207
Cdd:cd03181    1 EAAQVLQWISFANSELlpAAATWVlpllgiapynkkavDKAKEDLKRAlgvleehLLTRTYLVGERITLADIFVASALLR 80
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 585187043 208 ------SAAWQEQLkqnkapVHVKRWFGFLEAQQAFQSV 240
Cdd:cd03181   81 gfetvlDPEFRKKY------PNVTRWFNTVVNQPKFKAV 113
WHEP-TRS pfam00458
WHEP-TRS domain;
882-935 3.97e-06

WHEP-TRS domain;


Pssm-ID: 459819 [Multi-domain]  Cd Length: 53  Bit Score: 44.79  E-value: 3.97e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 585187043  882 LYDEVAAQGEVVRKLKAEKAPKIaqipfcgEIDCEdwIKK--------TTARDQDLEPGAPS 935
Cdd:pfam00458   1 LTEKIKAQGDLVRKLKAEKAPKE-------EIDAA--VKKllalkaqyKALTGKDYKPGAAP 53
WEPRS_RNA cd00936
WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote ...
882-903 6.99e-06

WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.


Pssm-ID: 238473 [Multi-domain]  Cd Length: 50  Bit Score: 44.15  E-value: 6.99e-06
                         10        20
                 ....*....|....*....|..
gi 585187043 882 LYDEVAAQGEVVRKLKAEKAPK 903
Cdd:cd00936    1 LYKKIAAQGDLVRELKAKKAPK 22
HisRS_RNA cd00938
HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS ...
813-847 1.32e-05

HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.


Pssm-ID: 238474 [Multi-domain]  Cd Length: 45  Bit Score: 43.23  E-value: 1.32e-05
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 585187043 813 RVAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAE 847
Cdd:cd00938    6 AVKLQGELVRKLKAEKASKEQIAEEVAKLLELKAQ 40
MetRS_RNA cd00939
MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in ...
814-853 1.72e-05

MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.


Pssm-ID: 238475 [Multi-domain]  Cd Length: 45  Bit Score: 42.84  E-value: 1.72e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 585187043 814 VAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEKTG 853
Cdd:cd00939    5 VAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLALAEG 44
WHEP-TRS smart00991
A conserved domain of 46 amino acids, called WHEP-TRS has been shown.to exist in a number of ...
883-905 2.10e-05

A conserved domain of 46 amino acids, called WHEP-TRS has been shown.to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases; This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.


Pssm-ID: 214960 [Multi-domain]  Cd Length: 56  Bit Score: 42.71  E-value: 2.10e-05
                           10        20
                   ....*....|....*....|...
gi 585187043   883 YDEVAAQGEVVRKLKAEKAPKIA 905
Cdd:smart00991   1 EEAVAAQGELVRKLKAEKASKDE 23
WHEPGMRS_RNA cd01200
EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher ...
883-905 2.10e-05

EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.


Pssm-ID: 238605 [Multi-domain]  Cd Length: 42  Bit Score: 42.53  E-value: 2.10e-05
                         10        20
                 ....*....|....*....|...
gi 585187043 883 YDEVAAQGEVVRKLKAEKAPKIA 905
Cdd:cd01200    1 YEKIAEQGDLVRKLKAEKAPKEE 23
PLN02734 PLN02734
glycyl-tRNA synthetase
814-851 2.84e-05

glycyl-tRNA synthetase


Pssm-ID: 178335 [Multi-domain]  Cd Length: 684  Bit Score: 48.20  E-value: 2.84e-05
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 585187043 814 VAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEK 851
Cdd:PLN02734  16 VTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSAL 53
class_I_aaRS_core cd00802
catalytic core domain of class I amino acyl-tRNA synthetase; Class I amino acyl-tRNA ...
276-359 3.77e-04

catalytic core domain of class I amino acyl-tRNA synthetase; Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.


Pssm-ID: 173901 [Multi-domain]  Cd Length: 143  Bit Score: 41.70  E-value: 3.77e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 585187043 276 TVRFPPEASGYLHIGHAKAALLN---QHY--QVNFKGKLIMRFDDTNPEKEK------EDFEKVILEDVAMLHikpDQFT 344
Cdd:cd00802    1 TTFSGITPNGYLHIGHLRTIVTFdflAQAyrKLGYKVRCIALIDDAGGLIGDpankkgENAKAFVERWIERIK---EDVE 77
                         90
                 ....*....|....*
gi 585187043 345 YTSDHFESIMKYAEK 359
Cdd:cd00802   78 YMFLQAADFLLLYET 92
GST_C_Delta_Epsilon cd03177
C-terminal, alpha helical domain of Class Delta and Epsilon Glutathione S-transferases; ...
179-228 5.59e-04

C-terminal, alpha helical domain of Class Delta and Epsilon Glutathione S-transferases; Glutathione S-transferase (GST) C-terminal domain family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.


Pssm-ID: 198287 [Multi-domain]  Cd Length: 117  Bit Score: 40.59  E-value: 5.59e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 585187043 179 LNHCLSLRTYLVGNSLSLADLCVWATLkGSAAWQEqLKQNKAPvHVKRWF 228
Cdd:cd03177   50 LETFLEGSDYVAGDQLTIADLSLVATV-STLEVVG-FDLSKYP-NVAAWY 96
GlyRS_RNA cd00935
GlyRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of GlyRS ...
810-851 1.09e-03

GlyRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of GlyRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix-turn-helix structure , which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.


Pssm-ID: 238472 [Multi-domain]  Cd Length: 51  Bit Score: 37.85  E-value: 1.09e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|..
gi 585187043 810 LYNRVAAQGDVVRELKSKKAAKEDIDAAVKQLLALKAEYKEK 851
Cdd:cd00935    4 LRAAVKEQGDLVRKLKEEGAPDVDIKKAVAELKARKKLLEDK 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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