|
Name |
Accession |
Description |
Interval |
E-value |
| WEMBL |
pfam05701 |
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required ... |
31-583 |
0e+00 |
|
Weak chloroplast movement under blue light; WEMBL consists of several plant proteins required for the chloroplast avoidance response under high intensity blue light. This avoidance response consists in the relocation of chloroplasts on the anticlinal side of exposed cells. Acts in association with PMI2 to maintain the velocity of chloroplast photo-relocation movement via the regulation of cp-actin filaments. Thus several member-sequences are described as "myosin heavy chain-like".
Pssm-ID: 461718 [Multi-domain] Cd Length: 562 Bit Score: 547.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 31 KVHIDTTAPIDSVKGAVSKFGGILDWR-------ERRKQVQDELDKVQEEVADYQKRSQEAAAGMARAAQELGGANGAID 103
Cdd:pfam05701 1 RGLIDTAAPFESVKEAVSKFGGIVDWKahriqtvERRKLVELELEKVQEEIPEYKKQSEAAEAAKAQVLEELESTKRLIE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 104 ELRLSLEKAQAEEARARQDTELAELRLRETQQGV--RESTAAKAELAVARDRHATAIADLRSVKAELELLRKEHAAAAAE 181
Cdd:pfam05701 81 ELKLNLERAQTEEAQAKQDSELAKLRVEEMEQGIadEASVAAKAQLEVAKARHAAAVAELKSVKEELESLRKEYASLVSE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 182 ADAAAARARVTVSSSQEAVKAVEELTAELVAVKEEVEACHLAHDEAEEKRMRVAMALEQEKVQWRRELELAEQEVKKLAD 261
Cdd:pfam05701 161 RDIAIKRAEEAVSASKEIEKTVEELTIELIATKESLESAHAAHLEAEEHRIGAALAREQDKLNWEKELKQAEEELQRLNQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 262 SLMATKDLESKVAAASETLVGLRAELFARaVEGTIGEEAATEK--EKPTVSSRAKLDKTKKELEDVKATVDKAKDEAKCL 339
Cdd:pfam05701 241 QLLSAKDLKSKLETASALLLDLKAELAAY-MESKLKEEADGEGneKKTSTSIQAALASAKKELEEVKANIEKAKDEVNCL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 340 RVAAASLSADLEKQKAELAALRRREGLSATSIPALEEELSRVTTGLTAAQVARAKDGGVETKMPAQLEEARREAEKAKAK 419
Cdd:pfam05701 320 RVAAASLRSELEKEKAELASLRQREGMASIAVSSLEAELNRTKSEIALVQAKEKEAREKMVELPKQLQQAAQEAEEAKSL 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 420 ARSAQEAVSKAREEAVLAKAAVHTMEARLEAVKREILAATTSEGIAAASAAAlLQEGKPARNAQLQEDVEGSVTLTAEEY 499
Cdd:pfam05701 400 AQAAREELRKAKEEAEQAKAAASTVESRLEAVLKEIEAAKASEKLALAAIKA-LQESESSAESTNQEDSPRGVTLSLEEY 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 500 DELSRRARETEEDAGKRVTEAVKQIKEAKDAEVRSLDKLAQLAKQTEQRRQALEAASAEAEEAEFGKLAAERELRQWRAE 579
Cdd:pfam05701 479 YELSKRAHEAEELANKRVAEAVSQIEEAKESELRSLEKLEEVNREMEERKEALKIALEKAEKAKEGKLAAEQELRKWRAE 558
|
....
gi 573926883 580 HEHQ 583
Cdd:pfam05701 559 HEQR 562
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
57-587 |
7.75e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 7.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 57 RERRKQVQDELDKVQEEVADYQKRSQEAAAGMARAAQELGGANGAIDELRLSLEKAQAEEARARQDTELAELRLRETQQg 136
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE- 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 137 vrESTAAKAELAVARDRHATAIADLRSVKAELELLRKEHAAAAAEADAAAARARVTVSSSQEAVKAVEELTAELVAVKEE 216
Cdd:COG1196 317 --RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 217 VEACHLAHDEAEEKRMRVAMALEQEKVQWRRELELAEQEVKKLADSLMATKDLESKVAAASETLVGLRAELfARAVEGTI 296
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL-AELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 297 GEEAATEKEKPTVSSRAKLDKTKKELEDV---KATVDKAKDEAKCLRVAAASLSADLEKQKAELAALRRREGLSATSIPA 373
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEADyegFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 374 LEEElsrvtTGLTAAQVARAKDGGVETKMPAQLEEARREAEKAKAKARSAQEAV--------SKAREEAVLAKAAVHTME 445
Cdd:COG1196 554 EDDE-----VAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDlvasdlreADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 446 ARLEAVKREILAATTSEGIAAASAAALLQEGKPARNAQLQEDVEGSVTLTAEEYDELSRRARETEEDAGKRVTEAVKQIK 525
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 573926883 526 EAKDAEVRSLDKLAQLAKQTEQRRQALEAASAEAEEAEFGKLAAERELRQWRAEHEHQRRLA 587
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
107-600 |
1.56e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 1.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 107 LSLEKAQAEEARARQDTELAELRLRETQQGVREstaAKAELAVARDRHATAIADLRSVKAELELLRKEHAAAAAEADAAA 186
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAE---LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 187 ARARVTVSSSQEAVKAVEELTAELVAVKEEVEACHLAHDEAEEKRMRVAMALEQEKVQWRRELELAEQEVKKLADSLMAT 266
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 267 KDLESKVAAASETLVGLRAELFARAVEGTIGEEAATEKEKPTVSSRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASL 346
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 347 SADLEKQKAELAALRRREGLSATSIPALEEELSRVTTGLTAAQVARAKDG------------GVETKMPAQLEEArrEAE 414
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGlrglagavavliGVEAAYEAALEAA--LAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 415 KAKAKARSAQEAVSKAREEAVLAKAAVHTMEARLEAVKREILAATTSEGIAAASAAALLQEGKPARNAQLQEDVEGSVTL 494
Cdd:COG1196 547 ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 495 TAEEYDELSRRARETEEDAGKRVTEAVKQIKEAKDAEVRSLDKLAQLAKQTEQRRQALEAASAEAEEAEFGKLAAERELR 574
Cdd:COG1196 627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
|
490 500
....*....|....*....|....*.
gi 573926883 575 QWRAEHEHQRRLAGETASPRTGLAEV 600
Cdd:COG1196 707 RELAEAEEERLEEELEEEALEEQLEA 732
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
57-552 |
2.81e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 2.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 57 RERRKQVQDELDKVQEEVADYQKRSQEAAAGMARAAQELGGANGAIDELRLSLEKAQAEEARARQDTELAELRLRETQQG 136
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 137 VRESTAAKAELAVARDRHATAIADLRSVKAELELLRKEHAAAAAEADAAAARARVTVSSSQEAVKAVEELTAELVAVKEE 216
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 217 VEACHLAHDEAEEKRMRVAMALEQEKVQWRRELELAEQEVKKLADSLMATKDLESKVAAASETLVGLRAELFARAVEGTI 296
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 297 GEEAATEKEKPTVSSRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASL--------SADLEKQKAELAALRRREGLSA 368
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFlpldkiraRAALAAALARGAIGAAVDLVAS 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 369 TSIPALEEELSRVTTGLTAAQVARAKDGGVETKMPAQLEEARREAEKAKAKARSAQEAVSKAREEAVLAKAAVHTMEARL 448
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 449 EAVKREILAATTSEGIAAASAAALLQEGKPARNAQLQEDVEGSVTLTAEEYDELSRRARETEEDAGkrvteavkqikEAK 528
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA-----------LEE 755
|
490 500
....*....|....*....|....
gi 573926883 529 DAEVRSLDKLAQLAKQTEQRRQAL 552
Cdd:COG1196 756 LPEPPDLEELERELERLEREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
55-591 |
3.41e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 76.72 E-value: 3.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 55 DWRERRKQVQDELDKVQEEVADYQKRSQEAAAGMARAAQE-LGGANGA--IDELRLSLEKAQAEEARARQDTELAELRlR 131
Cdd:PTZ00121 1080 DFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEaKKKAEDArkAEEARKAEDARKAEEARKAEDAKRVEIA-R 1158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 132 ETQQGVRESTAAKAELAvardRHATAIADLRSVKAELELLRKEHAAAAAEADAAAARARVtvsssQEAVKAVEELTAELV 211
Cdd:PTZ00121 1159 KAEDARKAEEARKAEDA----KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKA-----EEARKAEDAKKAEAV 1229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 212 AVKEEVEACHLAHDEAEEKR--MRVAMALEQEKVQWRRELELAEQEVKKLADSLMATKDLESKVAAASETLVGLRAELFA 289
Cdd:PTZ00121 1230 KKAEEAKKDAEEAKKAEEERnnEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKK 1309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 290 RAVEGTIGEEA---ATEKEKPTVSSRAKLDKTKKELEDVKATVDKAKDEAKCL--RVAAASLSADLEKQKAELAALRRRE 364
Cdd:PTZ00121 1310 KAEEAKKADEAkkkAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAeeKAEAAEKKKEEAKKKADAAKKKAEE 1389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 365 GLSATSIPALEEELSRVTTGLTAAQVARAKdgGVETKMPAQLEEARREAEKAKAKARSAQEAVSKAREeavlAKAAVHTM 444
Cdd:PTZ00121 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKK--ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE----AKKAEEAK 1463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 445 EARLEAVKREILAATTSEGIAAASAAALLQEGKpARNAQLQEDVEGSVTLTAEEYDELSRRARETEEDAGKRVTEAVKQI 524
Cdd:PTZ00121 1464 KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK-KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 525 KEAKDA-EVRSLDKL--AQLAKQTEQRRQALEAASAEAEEAEFGKLAAERELRQWRAEHEHQRRLAGETA 591
Cdd:PTZ00121 1543 EEKKKAdELKKAEELkkAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
58-589 |
9.50e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.63 E-value: 9.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 58 ERRKQVQDELDKVQEEVADYQKRS-QEAAAGMARAAQELGGANGA--IDELRLSLEKAQAEEARARQDTELAElRLRETQ 134
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIRKfEEARMAHFARRQAAIKAEEArkADELKKAEEKKKADEAKKAEEKKKAD-EAKKKA 1311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 135 QGVRESTAAKAELAVARDRHATAIADLRSVKAELELLRKEHAAAAAEADAAAARARVTVSSSQEAVKAVEELTAELVAVK 214
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 215 EEVEACHLAHDE---AEEKRMRVAMALEQEKVQWRRELELAEQEVKKLADSLMATKDLESKVAAASETlvglrAELFARA 291
Cdd:PTZ00121 1392 KADEAKKKAEEDkkkADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA-----EEAKKKA 1466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 292 VEGTIGEEAATEKEKptvssRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADlEKQKAElaALRRREGLSATSI 371
Cdd:PTZ00121 1467 EEAKKADEAKKKAEE-----AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE-EAKKAD--EAKKAEEAKKADE 1538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 372 PALEEELSRVTTGLTAAQVARAKDggvetkmPAQLEEARREAEKAKAKARSAQEA--VSKAREEAVLaKAAVHTMEARLE 449
Cdd:PTZ00121 1539 AKKAEEKKKADELKKAEELKKAEE-------KKKAEEAKKAEEDKNMALRKAEEAkkAEEARIEEVM-KLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 450 AVKREILAATTSEGIAAASAAALLQEGKPARNAqlqEDVEGSVTLTAEEYDELSRRARET-EEDAGKRVTEAVKQIKEAK 528
Cdd:PTZ00121 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA---EEKKKAEELKKAEEENKIKAAEEAkKAEEDKKKAEEAKKAEEDE 1687
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 573926883 529 DAEVRSLDKLAQLAKQTEQRRQALEAASAEAEEAEFGKLAAERELRQWRAEHEHQRRLAGE 589
Cdd:PTZ00121 1688 KKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
58-552 |
1.36e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 68.24 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 58 ERRKQVqDELDKVQEEV--ADYQKRSQEAAAGMARAAQELGGANGAIDELRLSLEKAQAEEARARQDTELAELRLRETQQ 135
Cdd:PTZ00121 1299 EEKKKA-DEAKKKAEEAkkADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 136 GVRESTAAKAElAVARDRHATAIADLRSVKAElELLRKEHAAAAAEADAAAARArvtVSSSQEAVKAVEEL--TAELVAV 213
Cdd:PTZ00121 1378 KKADAAKKKAE-EKKKADEAKKKAEEDKKKAD-ELKKAAAAKKKADEAKKKAEE---KKKADEAKKKAEEAkkADEAKKK 1452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 214 KEEVEACHLAHDEAEEKRMRVAMALEQEKVQWRRELELAEQEVKKLADSLMATKDLESKVAAASETLVGLRAELFARAVE 293
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 294 GTIGEEAATEKEKPTVSSRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLEKQKAELAALRRREGLSATSIPA 373
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 374 LEEELSRVttglTAAQVARAKdggvETKMPAQLEEARREAEKAKAkarsaqEAVSKAREEAVLAKAAVHTMEarlEAVKR 453
Cdd:PTZ00121 1613 KKAEEAKI----KAEELKKAE----EEKKKVEQLKKKEAEEKKKA------EELKKAEEENKIKAAEEAKKA---EEDKK 1675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 454 EILAATTSEGIAAASAAALLQEGKPARNAQLQEDVEGSVTLTAEEYDELSRRARETEEDAGKRVTEAVKQIKEAKDAEVR 533
Cdd:PTZ00121 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
490
....*....|....*....
gi 573926883 534 SlDKLAQLAKQTEQRRQAL 552
Cdd:PTZ00121 1756 K-KKIAHLKKEEEKKAEEI 1773
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
74-458 |
3.23e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 3.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 74 VADYQKRSQEAAAGMARAAQELGGANGAIDELRLSLEKAQAEEARA-RQDTELAELRLRETQQGVRESTAAKAELAVARD 152
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAeRYQALLKEKREYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 153 RHATAIADLRSVKAELELLRKEHAAAAAEADAAAARARVTVSSSQEAVKA-VEELTAELVAVKEEVEACHLAHDEAEEKR 231
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEkIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 232 MRVAMALEQEKVQwRRELELAEQEVKKLADSLMAtkdlesKVAAASETLVGLRAELfaraveGTIGEEAATEKEKpTVSS 311
Cdd:TIGR02169 325 AKLEAEIDKLLAE-IEELEREIEEERKRRDKLTE------EYAELKEELEDLRAEL------EEVDKEFAETRDE-LKDY 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 312 RAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLEKQKAELAALRRREGLSATSIPALEEELSRVTTGLTAAQVA 391
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQE 470
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 392 RAKDGGVETKMPAQLEEARREAEKAKAKARSAQEAVSKAREEAVLAKA---AVHTMEARLEAVKREILAA 458
Cdd:TIGR02169 471 LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAsiqGVHGTVAQLGSVGERYATA 540
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
192-527 |
7.74e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 7.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 192 TVSSSQEAVKAVEELTAELVAVKEEVEACHLAHDEAEEKRMRVAMALEQEKVQWRRELELAEQEVKKLADSLMATKDLES 271
Cdd:TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 272 KVAAASETLVGLRAELFARAVEGTIGEEAATEKEKPTVSSRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLE 351
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 352 KQKAELAALRRREGLSATSIPALEEELSRVTTGLTAAQVARAKdggvetkMPAQLE--------------EARREAEKAK 417
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE-------LESELEallnerasleealaLLRSELEELS 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 418 AKARSAQEAVSKAREEAVLAKAAVHTMEARLEAVK---REILAATTSEGIAAASAAALLQEGKPARNAQLQEDVE----- 489
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEvriDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKrlenk 980
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 573926883 490 ----GSVTLTA-EEYDELSRRARE-TEEDAGkrVTEAVKQIKEA 527
Cdd:TIGR02168 981 ikelGPVNLAAiEEYEELKERYDFlTAQKED--LTEAKETLEEA 1022
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
277-610 |
2.31e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 2.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 277 SETLVGLRAELFARAVEGTIGEEAATEKEKptVSSRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLEKQKAE 356
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAEL--EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 357 LAALRRREGLSATSIPALEEELSRVTTGLTAAQVARAKDGGVEtkmpAQLEEARREAEKAKAKARSAQEAVSKAREEAVL 436
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 437 AKAAVhtmEARLEAVKREILAATTSEGIAAASAAALLQ--EGKPARNAQLQEDVEgSVTLTAEEYDELSRRARETEEDAG 514
Cdd:COG1196 373 ELAEA---EEELEELAEELLEALRAAAELAAQLEELEEaeEALLERLERLEEELE-ELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 515 KRVTEAVKQIKEAKDAEVRSLDKLAQLAKQTEQRRQALEAASAEAEEAEFGKLAAERELRQWRAEHEH--QRRLAGETAS 592
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLagLRGLAGAVAV 528
|
330
....*....|....*...
gi 573926883 593 PRTGLAEVSVFDDASGGG 610
Cdd:COG1196 529 LIGVEAAYEAALEAALAA 546
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
55-556 |
6.54e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 6.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 55 DWRER----RKQVQDELDKVQEEVAdyQKRSQEAAAGMARAAQELGGANGAIDELRLSLEKAQAEEARARQDTELAELRL 130
Cdd:PRK02224 166 EYRERasdaRLGVERVLSDQRGSLD--QLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 131 ---RETQQ-------GVRESTAAKAELAVARDRHATAIADLRSVKAELELLRKEHAAAAAEAdaaaararvtvSSSQEAV 200
Cdd:PRK02224 244 eehEERREeletleaEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLD-----------DADAEAV 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 201 KA-VEELTAELVAVKEEVEACHLAHDEAEEKRMRV---AMALEQEKVQWRRELELAEQEVKK----LADSLMATKDLESK 272
Cdd:PRK02224 313 EArREELEDRDEELRDRLEECRVAAQAHNEEAESLredADDLEERAEELREEAAELESELEEareaVEDRREEIEELEEE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 273 VAAASETLVGLRAELFARAvegTIGEEAATEKEKpTVSSRAKLDKTKKELEDVKATVDKAKDEAKC-------------- 338
Cdd:PRK02224 393 IEELRERFGDAPVDLGNAE---DFLEELREERDE-LREREAELEATLRTARERVEEAEALLEAGKCpecgqpvegsphve 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 339 ----LRVAAASLSADLEKQKAELAALRRREGlSATSIPALEEELSRVTTGLTAAQVARA-KDGGVETKMpAQLEEARREA 413
Cdd:PRK02224 469 tieeDRERVEELEAELEDLEEEVEEVEERLE-RAEDLVEAEDRIERLEERREDLEELIAeRRETIEEKR-ERAEELRERA 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 414 EKAKAKARSAQEAVSKAREEAVLAKAAVHTMEARLEAVKREI------------LAATTSEGIAAASAAALLQEGKPARN 481
Cdd:PRK02224 547 AELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIeslerirtllaaIADAEDEIERLREKREALAELNDERR 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 482 AQLQEDVEGSVTLTAEEYD---ELSRRARETEEDAGKRVTEAVKQIKEAKDA----------EVRSLDKLAQLAKQTEQR 548
Cdd:PRK02224 627 ERLAEKRERKRELEAEFDEariEEAREDKERAEEYLEQVEEKLDELREERDDlqaeigavenELEELEELRERREALENR 706
|
....*...
gi 573926883 549 RQALEAAS 556
Cdd:PRK02224 707 VEALEALY 714
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
208-454 |
8.50e-06 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 49.18 E-value: 8.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 208 AELVAVKEEVEACHLAHDEAEEKRMRvamaLEQEKVQwrRELELAEQEVKKLADSLMATKDLESKVAAASETLVGLRAEL 287
Cdd:PRK05035 436 AEIRAIEQEKKKAEEAKARFEARQAR----LEREKAA--REARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIK 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 288 FARAVEGTiGEEAATEKEKPTVSSRAKLDKTKKELEDVKATVD------KAKDEAKCLRVAAASLSADLEKQKAELAALR 361
Cdd:PRK05035 510 AGARPDNS-AVIAAREARKAQARARQAEKQAAAAADPKKAAVAaaiaraKAKKAAQQAANAEAEEEVDPKKAAVAAAIAR 588
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 362 RREGLSATSIPALEEELSRVTTGLTAAQV------ARAKDGGVETKMPAQLEEARREAE------KAKAKARSAQEAVSK 429
Cdd:PRK05035 589 AKAKKAAQQAASAEPEEQVAEVDPKKAAVaaaiarAKAKKAEQQANAEPEEPVDPRKAAvaaaiaRAKARKAAQQQANAE 668
|
250 260
....*....|....*....|....*
gi 573926883 430 AREEAVLAKAAVHTMEARLEAVKRE 454
Cdd:PRK05035 669 PEEAEDPKKAAVAAAIARAKAKKAA 693
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-323 |
2.02e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 53 ILDWRERRKQVQDELDKVQEEVADYQKRSQEAAAGMARAAQELGGANGAIDELRLSLEKAQAEEARARQDTELAELRLRE 132
Cdd:TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTE 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 133 TQQGVRESTAAKAELAVARDRHATAIADLR-----------SVKAELELLRKEHAAAAAEADAAAARARVTVSSSQEAVK 201
Cdd:TIGR02168 759 LEAEIEELEERLEEAEEELAEAEAEIEELEaqieqlkeelkALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 202 AVEELTAELVAVKEEVEACHLAHDEAEEKR----------------MRVAMA-LEQEKVQWRRELELAEQEVKKLADSLM 264
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIeeleseleallnerasLEEALAlLRSELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 265 ATKDLESKVAAASETLVGLRAELFAR-AVEGTIGEEAATEKEKPTVSSRAKLDKTKKELE 323
Cdd:TIGR02168 919 ELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLE 978
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
52-453 |
4.07e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 4.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 52 GILDWRERRKQVQDELDKVQEEVA---------DYQKRSQEAAAGMARAAQELggaNGAIDELRLSLEKAQAEEARARQD 122
Cdd:TIGR02168 166 GISKYKERRKETERKLERTRENLDrledilnelERQLKSLERQAEKAERYKEL---KAELRELELALLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 123 telaelrlretqqgvrestAAKAELAVARDRHATAIADLRSVKAELELLRKEHaaaaaeadaaaararvtvsssQEAVKA 202
Cdd:TIGR02168 243 -------------------ELQEELKEAEEELEELTAELQELEEKLEELRLEV---------------------SELEEE 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 203 VEELTAELVAVKEEVEachlahdeaeekrmrvamALEQEKVQWRRELELAEQEVKKLADSLmatKDLESKVAAASETLVG 282
Cdd:TIGR02168 283 IEELQKELYALANEIS------------------RLEQQKQILRERLANLERQLEELEAQL---EELESKLDELAEELAE 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 283 LRAELfaravegtigEEAATEKEkptvSSRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLEKQKAELAALRR 362
Cdd:TIGR02168 342 LEEKL----------EELKEELE----SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 363 REGLSATSIPALEEELSRVTTGLTAAQVARAKDGGVETKmpAQLEEARREAEKAKAKARSAQEAVSKAREEAVLAKAAVH 442
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELE--EELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
410
....*....|.
gi 573926883 443 TMEARLEAVKR 453
Cdd:TIGR02168 486 QLQARLDSLER 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
57-351 |
6.23e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 6.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 57 RERRKQVQDELDKVQEEVADYQKRSQEAAAGMARAAQELGGANGAIDELRLSLEKAQAEEARARQDTELAELRLRETQQG 136
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 137 VRESTAAKAELAVARDRhatAIADLRSVKAELELLRKEHaaaaaeadaaaararvtvsssQEAVKAVEELTAELVAVKEE 216
Cdd:TIGR02168 318 LEELEAQLEELESKLDE---LAEELAELEEKLEELKEEL---------------------ESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 217 VEAChlaHDEAEEKRMRVAMALEQEKVQwRRELELAEQEVKKLADSLmatKDLESKVAAASETLVGLRAELFARAVEGTI 296
Cdd:TIGR02168 374 LEEL---EEQLETLRSKVAQLELQIASL-NNEIERLEARLERLEDRR---ERLQQEIEELLKKLEEAELKELQAELEELE 446
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 573926883 297 GEEAATEKEKPTVssRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLE 351
Cdd:TIGR02168 447 EELEELQEELERL--EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE 499
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
45-350 |
9.86e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 9.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 45 GAVSKFGGILDWR---ERRKQVQDELDKVQEEVADYQKRSQEAAAGMARAAQELGGANGAIDELRLSLEKAQAEEARARQ 121
Cdd:TIGR02169 658 GSRAPRGGILFSRsepAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 122 DTELAELRLRETQQgvrESTAAKAELAvardrhataiaDLRSVKAELELlrKEHAAAAAEADAAAARARVTVSSSQEAVK 201
Cdd:TIGR02169 738 RLEELEEDLSSLEQ---EIENVKSELK-----------ELEARIEELEE--DLHKLEEALNDLEARLSHSRIPEIQAELS 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 202 AVEELTAELVAVKEEVEA----CHLAHDEAEEKRmrvamaleQEKVQWRRELELAEQEVKKLADSLMATK-DLESKVAaa 276
Cdd:TIGR02169 802 KLEEEVSRIEARLREIEQklnrLTLEKEYLEKEI--------QELQEQRIDLKEQIKSIEKEIENLNGKKeELEEELE-- 871
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 573926883 277 setlvglRAELFARAVEGTIGEEAATEKEKptvssRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADL 350
Cdd:TIGR02169 872 -------ELEAALRDLESRLGDLKKERDEL-----EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
57-585 |
1.26e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 57 RERRKQVQDELDKVQEEVADYQKRSQEAAAGMARaaQELGGANGAIDELRLSLEKAQAEEARARQDTELAELRLRETQQG 136
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQ--AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 137 VRESTAAKAELAVARDRHATAIADLRSVKAELELLR------------KEHAAAAAEADAAAARARVTVSSSQEAVKAVE 204
Cdd:TIGR02168 484 LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSgilgvlselisvDEGYEAAIEAALGGRLQAVVVENLNAAKKAIA 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 205 ELT---------AELVAVKE-EVEACHLAHDEAEEKRMRVAMALEQEKVQWRRELELAEQEVKkLADSLMATKDLESKVA 274
Cdd:TIGR02168 564 FLKqnelgrvtfLPLDSIKGtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVL-VVDDLDNALELAKKLR 642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 275 AaSETLVGLRAELFARavEGTIGEEAAtEKEKPTVSSRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLEKQK 354
Cdd:TIGR02168 643 P-GYRIVTLDGDLVRP--GGVITGGSA-KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLR 718
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 355 AELAALRRREGLSATSIPALEEELSRVTTGLTAAQVARAKDGGVETKMPAQLEEARREAEKAKAKARSAQEAVSKAREEA 434
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEEL 798
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 435 VLAKAAVHTMEARLEAVKREIlaattsegiaaasaaallqegkpARNAQLQEDVEGSVTLTAEEYDELSRRARETEEDag 514
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEA-----------------------ANLRERLESLERRIAATERRLEDLEEQIEELSED-- 853
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 573926883 515 krVTEAVKQIKEAKDAEVRSLDKLAQLAKQteqrrqaleaaSAEAEEAEFGKLAAERELRQWRAEHEHQRR 585
Cdd:TIGR02168 854 --IESLAAEIEELEELIEELESELEALLNE-----------RASLEEALALLRSELEELSEELRELESKRS 911
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
240-552 |
1.65e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 240 QEKVQWRRELELA------EQEVKKLADSLMATKDLESKVAAASETLVGLRAELfaravegtigeeaaTEKEKPTVSSRA 313
Cdd:TIGR02168 216 KELKAELRELELAllvlrlEELREELEELQEELKEAEEELEELTAELQELEEKL--------------EELRLEVSELEE 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 314 KLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLEKQKAELAALRRREGLSATSIPALEEELSRVTTGLTAAQVARA 393
Cdd:TIGR02168 282 EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 394 KDGGVETKMPAQLEEARREAEKAKAKARSAQEAVSKAREEAVLAKAAVHTMEARLEAVKREIlaattsegiaaasaaalL 473
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI-----------------E 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 573926883 474 QEGKPARNAQLQEdVEGSVTLTAEEYDELSRRARETEEdAGKRVTEAVKQIKEAKDAEVRSLDKLAQLAKQTEQRRQAL 552
Cdd:TIGR02168 425 ELLKKLEEAELKE-LQAELEELEEELEELQEELERLEE-ALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
381-544 |
2.27e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 381 VTTGLTAAQVARAKDGGVETKMPAQLEEARREAEKAKAKARSAQEAVSKAREEAVLAKAAVHTMEARLEAVKREILAATT 460
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGG 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 461 S------EGIAAASAAALLQEGKPARNAQLQEDVEGSVTLTAEEYDELSRRARETEEDAGKRVTEAVKQIKEAKDAEVRS 534
Cdd:COG4913 338 DrleqleREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDL 417
|
170
....*....|
gi 573926883 535 LDKLAQLAKQ 544
Cdd:COG4913 418 RRELRELEAE 427
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
138-511 |
5.15e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 138 RESTAAKAELAVARDRHATAIADLRSVKAELELLRKEHAAAAAEADAAAARARVTVSssqEAVKAVEELTAELVAVKEEV 217
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGY---ELLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 218 EAChlahDEAEEKRMRVAMALEQEKVQWRRELELAEQEVKKLADSLMATkdleskvaaasetlvgLRAELFARAVEGTIG 297
Cdd:TIGR02169 247 ASL----EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR----------------VKEKIGELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 298 EEAATEKEKPTVSSRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLEKQKAELAALRRREGLSATSIPALEEE 377
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 378 LSRVTTGLTAAQvarakdggvetkmpAQLEEARREAEKAKAKARSAQEAVSKAREEAVLAKAAVHTMEARLEAVKREILA 457
Cdd:TIGR02169 387 LKDYREKLEKLK--------------REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKK 452
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 573926883 458 attsegiaaasaaallQEGKPARNAQLQEDVEGSVTLTAEEYDELSRRARETEE 511
Cdd:TIGR02169 453 ----------------QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
110-394 |
5.44e-04 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 43.01 E-value: 5.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 110 EKAQAEEARARQDTELAELRLRETQQGVRESTAAKAELAVARDRHATAIADLRSVKAELEllrkehaaaaaeadAAAARA 189
Cdd:PRK05035 444 EKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAAT--------------QPIVIK 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 190 RVTVSSSQEAVKAVEELTAELVAVKEEVEachlAHDEAEEKRMRVAMALEQEKVQwRRELELAEQEVKKLADSLMAtkdl 269
Cdd:PRK05035 510 AGARPDNSAVIAAREARKAQARARQAEKQ----AAAAADPKKAAVAAAIARAKAK-KAAQQAANAEAEEEVDPKKA---- 580
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 270 esKVAAASETLVGLRAELFARAVEGTIGEEAATEKEKPTVSSRAKLDKTKKELEdvKATVDKAKDEAKCLRVAAAslsad 349
Cdd:PRK05035 581 --AVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQ--ANAEPEEPVDPRKAAVAAA----- 651
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 573926883 350 LEKQKAELAALrrrEGLSATSIPALEEELSRVttgltAAQVARAK 394
Cdd:PRK05035 652 IARAKARKAAQ---QQANAEPEEAEDPKKAAV-----AAAIARAK 688
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
55-225 |
6.99e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 6.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 55 DWRERRKQVQDELDKVQEEVADYQKRSQEAAagmaraaQELGGANGAIDelrlsleKAQAEEARARQDTELAELRLRETq 134
Cdd:pfam12128 594 EWAASEEELRERLDKAEEALQSAREKQAAAE-------EQLVQANGELE-------KASREETFARTALKNARLDLRRL- 658
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 135 QGVRESTAAKAELAVARdRHATAIADLRSVKAELELLRKEHAAAAAEADAAAARARVTVSSSQEAVkaVEELTAELVAVK 214
Cdd:pfam12128 659 FDEKQSEKDKKNKALAE-RKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVV--EGALDAQLALLK 735
|
170
....*....|.
gi 573926883 215 EEVEACHLAHD 225
Cdd:pfam12128 736 AAIAARRSGAK 746
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
322-552 |
7.01e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 7.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 322 LEDVKATVDKAKDEAKCLRvAAASLSADLEKQKAELAALRRREGlSATSIPALEEELSRVTTGL--TAAQVARAKDGGVE 399
Cdd:PRK10929 57 LEERKGSLERAKQYQQVID-NFPKLSAELRQQLNNERDEPRSVP-PNMSTDALEQEILQVSSQLleKSRQAQQEQDRARE 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 400 -----TKMPAQLEEARREAEKAKAKARS----------AQEAVSKAreEAVLAKAAVHTME-ARLEAVKREILAATTSEG 463
Cdd:PRK10929 135 isdslSQLPQQQTEARRQLNEIERRLQTlgtpntplaqAQLTALQA--ESAALKALVDELElAQLSANNRQELARLRSEL 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 464 IAAASAA--ALLQEGKPARNAQLQEDvegsvtltAEEYDELSRRARETEEDAGKRVTEAVKQIKEAKDA---EVRSLDKL 538
Cdd:PRK10929 213 AKKRSQQldAYLQALRNQLNSQRQRE--------AERALESTELLAEQSGDLPKSIVAQFKINRELSQAlnqQAQRMDLI 284
|
250
....*....|....*...
gi 573926883 539 A----QLAKQTEQRRQAL 552
Cdd:PRK10929 285 AsqqrQAASQTLQVRQAL 302
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
224-566 |
9.88e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 9.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 224 HDEAEEKRMRVAMALEQEKVQWRRELELAEQEVKKLADSLMATKDLESKVAAASETLVGLRA--ELFARAVEGTIGEEAA 301
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYldYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 302 TEKEKPTVSSRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLEKQKAELAALRRREGLSATSIPALEEELSRV 381
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 382 TTGLTAAQVARAKDGGVETkmpaqLEEARREAEKAKAKARSAQEAVSKAREEAVLAKAAVHTMEARLEAVKREILAATTS 461
Cdd:pfam02463 327 EKELKKEKEEIEELEKELK-----ELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 462 EGIAAASAAALLQEGKPARNAQLQEdvEGSVTLTAEEYDELSRRARETEEDAGKRVTEAVKQIKEAKDAEVRSLDKLAQL 541
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKK--EELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340
....*....|....*....|....*
gi 573926883 542 AKQTEQRRQALEAASAEAEEAEFGK 566
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESK 504
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
310-536 |
1.20e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 310 SSRAKLDKTKKELEDVKATVDKAKDEakclrvaAASLSADLEKQKAELAALRRREGLSATSI--PALEEELSRVTtglta 387
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEER-------LEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELE----- 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 388 AQVARAKDGgvetkmPAQLEEARREAEKAKAKARSAQEAVSKAREEAVLAKAAVHTMEARLEAVKREIlaattsEGIAAA 467
Cdd:COG4913 675 AELERLDAS------SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL------EAAEDL 742
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 573926883 468 SAAALLQEGKPARNAQLQEDVEGSVtltAEEYDELSRRARETEEDAGKRVTEAVKQIKEAKDAEVRSLD 536
Cdd:COG4913 743 ARLELRALLEERFAAALGDAVEREL---RENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLD 808
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
93-591 |
1.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 93 QELGGANGAIDELRLSLEKAQAEEARARQ-----DTELAELRLRETQQGVRESTAAKAELAVARDRHATAIADLRSVKAE 167
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEArldalREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEAL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 168 LELLRKEHAAAAAEADAAAARARVTVSSSQEAVKAVE----ELTAELVAVKEEVEACHLAHDEAEEKRMRVAMALEQEKV 243
Cdd:COG4913 368 LAALGLPLPASAEEFAALRAEAAALLEALEEELEALEealaEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRD 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 244 QWRRELELAEQEVKKLADsLMATKDLESKVAAASETLVG-------LRAELFARAvegtigeeaatekekptvssRAKLD 316
Cdd:COG4913 448 ALAEALGLDEAELPFVGE-LIEVRPEEERWRGAIERVLGgfaltllVPPEHYAAA--------------------LRWVN 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 317 KTKKELEDVKATVDKAKDEAKCLRVAAASLSADLEKQ--------KAELAalRRREGLSATSipalEEELSRVTTGLTAA 388
Cdd:COG4913 507 RLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKphpfrawlEAELG--RRFDYVCVDS----PEELRRHPRAITRA 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 389 ------QVARAKDGGVETKMPAQL-EEARREAEKAKAKARSAQEAVSKAREEAVLAKAAVHTMEARLEAVKReiLAATTS 461
Cdd:COG4913 581 gqvkgnGTRHEKDDRRRIRSRYVLgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR--LAEYSW 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 462 EGIAAASAAALLQEgkpaRNAQLQEDVEGSVTLtaeeydelsRRARETEEDAGKRVTEAVKQIKEAKDAEVRSLDKLAQL 541
Cdd:COG4913 659 DEIDVASAEREIAE----LEAELERLDASSDDL---------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQA 725
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 573926883 542 AKQTEQRRQALEAASAEAEEAEFGKLAAE-RELRQWRAEHEHQRRLAGETA 591
Cdd:COG4913 726 EEELDELQDRLEAAEDLARLELRALLEERfAAALGDAVERELRENLEERID 776
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
246-423 |
3.92e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 3.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 246 RRELELAEQEVKKLADSLMATKDLESKVAAASETLVGLRAELFARA-VEGTIGEEAATEKEkptvssRAKLDKTKKELED 324
Cdd:COG4913 616 EAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdVASAEREIAELEAE------LERLDASSDDLAA 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 325 VKATVDKAKDEAKCLRVAAASLSADLEKQKAELAALRRREGLSATSIPALEEELSRVTTGLTAAQVARAKDGGVETKMPA 404
Cdd:COG4913 690 LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRE 769
|
170
....*....|....*....
gi 573926883 405 QLEEARREAEKAKAKARSA 423
Cdd:COG4913 770 NLEERIDALRARLNRAEEE 788
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
320-543 |
4.67e-03 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 40.32 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 320 KELEDVKATVDKAKDEAKCLRvaaaslsadLEKQKAELAALRRR--EGLSATSIPALEEELSRVTTGLTAAQVARAKDGG 397
Cdd:PRK05035 441 IEQEKKKAEEAKARFEARQAR---------LEREKAAREARHKKaaEARAAKDKDAVAAALARVKAKKAAATQPIVIKAG 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 398 VETKMPAQLEEARREAEKAKAKARSAQEAVSKAREEAVLAkAAVhtmeARLEAVKREILAATTSEGIAAASAAALLQEGK 477
Cdd:PRK05035 512 ARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVA-AAI----ARAKAKKAAQQAANAEAEEEVDPKKAAVAAAI 586
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 478 ---PARNAQLQEDVEGSVTLTAEEYDELSRRAreteedAGKRVTEAVKQIKEAKDAEVRSLD-KLAQLAK 543
Cdd:PRK05035 587 araKAKKAAQQAASAEPEEQVAEVDPKKAAVA------AAIARAKAKKAEQQANAEPEEPVDpRKAAVAA 650
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
60-605 |
7.43e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.51 E-value: 7.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 60 RKQVQDELDKVQ--EEVADYQKRSQEAAAGMARAAQELGGANGAIDELRLSLEKAQAEEARARQDTELAELRLRETQQgv 137
Cdd:COG4913 241 HEALEDAREQIEllEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARL-- 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 138 resTAAKAELAVARDRHATA----IADLRSVKAELELLRKEHAAAAAEADAAAARARVTVSSSQEAVKA-VEELTAELVA 212
Cdd:COG4913 319 ---DALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAlRAEAAALLEA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 213 VKEEVEACHLAHDEAEEKRMRvamaLEQEKVQWRRELELAEQEVKKLADSLMATKDLESKVAAASET-------LVGLRA 285
Cdd:COG4913 396 LEEELEALEEALAEAEAALRD----LRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAelpfvgeLIEVRP 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 286 ElFAR---AVEGTIGEEAAT----EKEKPTVssRAKLDKTKKELEDVKATVDKAKDEAKCLRVAAASLSADLEKQ----- 353
Cdd:COG4913 472 E-EERwrgAIERVLGGFALTllvpPEHYAAA--LRWVNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKphpfr 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 354 ---KAELAalRRREGLSATSipalEEELSRVTTGLTAA------QVARAKDGGVETKMPAQL-EEARREAEKAKAKARSA 423
Cdd:COG4913 549 awlEAELG--RRFDYVCVDS----PEELRRHPRAITRAgqvkgnGTRHEKDDRRRIRSRYVLgFDNRAKLAALEAELAEL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 424 QEAVSKAREEAVLAKAAVHTMEARLEAVKReiLAATTSEGIAAASAAALLQEgkpaRNAQLQEDVEGSVTLTA------- 496
Cdd:COG4913 623 EEELAEAEERLEALEAELDALQERREALQR--LAEYSWDEIDVASAEREIAE----LEAELERLDASSDDLAAleeqlee 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 497 --EEYDELSRRARETEEDAG---KRVTEAVKQIKEAKDAEVR-----------SLDKLAQLAKQTEQRRQALEAASAEAE 560
Cdd:COG4913 697 leAELEELEEELDELKGEIGrleKELEQAEEELDELQDRLEAaedlarlelraLLEERFAAALGDAVERELRENLEERID 776
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 573926883 561 EAEFGKLAAERELRqwRAEHEHQRRLAGETASPRTGLAEVSVFDD 605
Cdd:COG4913 777 ALRARLNRAEEELE--RAMRAFNREWPAETADLDADLESLPEYLA 819
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
313-550 |
9.98e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 39.12 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 313 AKLDKTKKELEDVKATVDKAKDEAKclrvaaaSLSADLEKQKAELAALRRREgLSATSIPALEEELSRVTTgltaaqvar 392
Cdd:PRK11281 73 DKIDRQKEETEQLKQQLAQAPAKLR-------QAQAELEALKDDNDEETRET-LSTLSLRQLESRLAQTLD--------- 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 393 akdggvetkmpaQLEEARREAEKAKAKARSAQEAVSKAReeAVLAKAAVHTME--ARLEAVKREILAATTSEGIAAASAA 470
Cdd:PRK11281 136 ------------QLQNAQNDLAEYNSQLVSLQTQPERAQ--AALYANSQRLQQirNLLKGGKVGGKALRPSQRVLLQAEQ 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 573926883 471 ALLQegkpARNAQLQEDVEGSVTLTA---EEYDELSRRARETEEDA--------GKRVTEAVKQIKEAkdaevRSLDKLA 539
Cdd:PRK11281 202 ALLN----AQNDLQRKSLEGNTQLQDllqKQRDYLTARIQRLEHQLqllqeainSKRLTLSEKTVQEA-----QSQDEAA 272
|
250
....*....|....*..
gi 573926883 540 Q------LAKQTEQRRQ 550
Cdd:PRK11281 273 RiqanplVAQELEINLQ 289
|
|
| |
