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Conserved domains on  [gi|568976551|ref|XP_006534630|]
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large ribosomal subunit protein bL27m isoform X1 [Mus musculus]

Protein Classification

bL27 family ribosomal protein( domain architecture ID 1592)

bL27 family ribosomal protein such as bacterial 50S ribosomal protein L27, chloroplast 50S ribosomal protein L27, and metazoan mitochondrial 39S ribosomal protein L27

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L27 super family cl46636
Ribosomal L27 protein;
11-57 4.60e-20

Ribosomal L27 protein;


The actual alignment was detected with superfamily member pfam01016:

Pssm-ID: 480976  Cd Length: 77  Bit Score: 76.62  E-value: 4.60e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 568976551   11 RAAGHYVHAGNILGTQRQFRWHPGAHVGLGRNKCLYALEEGIVRYTK 57
Cdd:pfam01016  24 KFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFER 70
 
Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
11-57 4.60e-20

Ribosomal L27 protein;


Pssm-ID: 460025  Cd Length: 77  Bit Score: 76.62  E-value: 4.60e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 568976551   11 RAAGHYVHAGNILGTQRQFRWHPGAHVGLGRNKCLYALEEGIVRYTK 57
Cdd:pfam01016  24 KFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFER 70
RpmA COG0211
Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 ...
 11-57 7.10e-12

Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439981  Cd Length: 82  Bit Score: 55.82  E-value: 7.10e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 568976551  11 RAAGHYVHAGNILGTQRQFRWHPGAHVGLGRNKCLYALEEGIVRYTK 57
Cdd:COG0211   25 RFGGQKVKAGNIIVRQRGTKFHPGKNVGMGKDHTLFALVDGVVKFER 71
rpmA PRK05435
50S ribosomal protein L27; Validated
 11-57 1.39e-11

50S ribosomal protein L27; Validated


Pssm-ID: 235464  Cd Length: 82  Bit Score: 55.42  E-value: 1.39e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 568976551  11 RAAGHYVHAGNILGTQRQFRWHPGAHVGLGRNKCLYALEEGIVRYTK 57
Cdd:PRK05435  25 RFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFER 71
 
Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
11-57 4.60e-20

Ribosomal L27 protein;


Pssm-ID: 460025  Cd Length: 77  Bit Score: 76.62  E-value: 4.60e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 568976551   11 RAAGHYVHAGNILGTQRQFRWHPGAHVGLGRNKCLYALEEGIVRYTK 57
Cdd:pfam01016  24 KFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFER 70
RpmA COG0211
Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 ...
 11-57 7.10e-12

Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439981  Cd Length: 82  Bit Score: 55.82  E-value: 7.10e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 568976551  11 RAAGHYVHAGNILGTQRQFRWHPGAHVGLGRNKCLYALEEGIVRYTK 57
Cdd:COG0211   25 RFGGQKVKAGNIIVRQRGTKFHPGKNVGMGKDHTLFALVDGVVKFER 71
rpmA PRK05435
50S ribosomal protein L27; Validated
 11-57 1.39e-11

50S ribosomal protein L27; Validated


Pssm-ID: 235464  Cd Length: 82  Bit Score: 55.42  E-value: 1.39e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 568976551  11 RAAGHYVHAGNILGTQRQFRWHPGAHVGLGRNKCLYALEEGIVRYTK 57
Cdd:PRK05435  25 RFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFER 71
rpl27 CHL00121
ribosomal protein L27; Reviewed
 11-57 2.51e-10

ribosomal protein L27; Reviewed


Pssm-ID: 214370  Cd Length: 86  Bit Score: 52.32  E-value: 2.51e-10
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 568976551  11 RAAGHYVHAGNILGTQRQFRWHPGAHVGLGRNKCLYALEEGIVRYTK 57
Cdd:CHL00121  25 RFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYALIDGFVKFKK 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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