|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
144-462 |
4.32e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 4.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 144 ELKWEMEREEKKLL---WEQLQGLESSKQAETSRLQEELAKLSEKLKKKQEsfcRLQTEKETLfNDSRNKIEELQQRkEA 220
Cdd:COG1196 217 ELKEELKELEAELLllkLRELEAELEELEAELEELEAELEELEAELAELEA---ELEELRLEL-EELELELEEAQAE-EY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 221 DLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVssqsADAQEQVEGLLAENSALRTSLAALEQIQ 300
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----EELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 301 TAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 380
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 381 KVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVE 460
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVA 527
|
..
gi 569008864 461 EL 462
Cdd:COG1196 528 VL 529
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
244-588 |
2.65e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.37 E-value: 2.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 244 AELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQH 323
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 324 RQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELG 403
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE-EALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 404 AVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEA 483
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEE 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 484 EESLQQQQQEQEETLKLcrEEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQevkdtVDGQRILEKKGSAVLK 563
Cdd:COG1196 459 EALLELLAELLEEAALL--EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-----LAGLRGLAGAVAVLIG 531
|
330 340
....*....|....*....|....*
gi 569008864 564 DLKRqlhLERKRADKLQERLQEILT 588
Cdd:COG1196 532 VEAA---YEAALEAALAAALQNIVV 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
145-672 |
4.70e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 4.70e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 145 LKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLsEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRK------ 218
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAEL-EELRLELEELELELEEAQAEEYELLAELARLEQDIarleer 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 219 ----EADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLA 294
Cdd:COG1196 311 rrelEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLE 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 295 ALEQIQTAKTQELNmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEAR 374
Cdd:COG1196 391 ALRAAAELAAQLEE-LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 375 KSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRH-------EKELLGVRARYERELRELHEDKKRQEEEL--RGQIREE 445
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegvkAALLLAGLRGLAGAVAVLIGVEAAYEAALeaALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 446 KARTRELENLQHTVEELQAQvhsmDGAKGWFERRLKEAEESLQQQQQEQEETLKLcREEHAAELKGKDEELQNVREQL-- 523
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAA----KAGRATFLPLDKIRARAALAAALARGAIGAA-VDLVASDLREADARYYVLGDTLlg 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 524 -QQAQEERDGHVKTISNLKQEVKD-TVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVL 601
Cdd:COG1196 625 rTLVAARLEAALRRAVTLAGRLREvTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE 704
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008864 602 SEMNSPSRTQTGDSSSVSSFSYREILKEKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQE 672
Cdd:COG1196 705 EERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
143-466 |
2.71e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.86 E-value: 2.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 143 VELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQesfcRLQTEKETLFNDSRNKIEELQQRKEAdl 222
Cdd:TIGR02168 673 LERRREIEELEEKI--EELEEKIAELEKALAELRKELEELEEELEQLR----KELEELSRQISALRKDLARLEAEVEQ-- 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 223 kaQLARTQKLQQELEAANQSLAELRDQRQGERlEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTA 302
Cdd:TIGR02168 745 --LEERIAQLSKELTELEAEIEELEERLEEAE-EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAAN 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 303 KTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKV 382
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSE 901
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 383 MLDEL---AMETLQEKSQHKEELGAVRLRHEKeLLGVRARYERELRELHEDkkrqeeELRGQIREEKARTRELENLQHTV 459
Cdd:TIGR02168 902 ELRELeskRSELRRELEELREKLAQLELRLEG-LEVRIDNLQERLSEEYSL------TLEEAEALENKIEDDEEEARRRL 974
|
....*..
gi 569008864 460 EELQAQV 466
Cdd:TIGR02168 975 KRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-588 |
3.24e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 3.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 166 SSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL--FNDSRNKIEElqQRKEADLKAQLA-RTQKLQQELEAANQS 242
Cdd:TIGR02168 151 EAKPEERRAIFEEAAGISKYKERRKETERKLERTRENLdrLEDILNELER--QLKSLERQAEKAeRYKELKAELRELELA 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 243 LAELRDQRQGERLEhaaALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQ 322
Cdd:TIGR02168 229 LLVLRLEELREELE---ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 323 HRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvmldelamETLQEKSQHKEEL 402
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE--------AELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 403 gavrlrhEKELLGVRARYerelrelhEDKKRQEEELRGQIREEKARtreLENLQHTVEELQAQVhsmdgakgwfERRLKE 482
Cdd:TIGR02168 378 -------EEQLETLRSKV--------AQLELQIASLNNEIERLEAR---LERLEDRRERLQQEI----------EELLKK 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 483 AEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVl 562
Cdd:TIGR02168 430 LEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV- 508
|
410 420
....*....|....*....|....*.
gi 569008864 563 kdlkRQLHLERKRADKLQERLQEILT 588
Cdd:TIGR02168 509 ----KALLKNQSGLSGILGVLSELIS 530
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
150-577 |
3.91e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.56 E-value: 3.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 150 EREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLAR- 228
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA-DEAKKKAEEKKKADEAKKKAEEAKk 1445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 229 ---TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQ 305
Cdd:PTZ00121 1446 adeAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 306 ELNMLREQTSelASELqhRQAEYEElmgQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR----- 380
Cdd:PTZ00121 1526 EAKKAEEAKK--ADEA--KKAEEKK---KADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARieevm 1598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 381 KVMLDELAMETLQEKSQHKEELGAVRLRHEKEllgVRARYErELRELHEDKKRQEEELRGQIREEKARTRELENlqhtvE 460
Cdd:PTZ00121 1599 KLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE---EKKKVE-QLKKKEAEEKKKAEELKKAEEENKIKAAEEAK-----K 1669
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 461 ELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEH---AAELKGKDEELQNVREQLQQAQEE-------- 529
Cdd:PTZ00121 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEkkkAEELKKAEEENKIKAEEAKKEAEEdkkkaeea 1749
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 569008864 530 --RDGHVKTISNLKQEVKDTVDGQRileKKGSAVL------KDLKRQLHLERKRAD 577
Cdd:PTZ00121 1750 kkDEEEKKKIAHLKKEEEKKAEEIR---KEKEAVIeeeldeEDEKRRMEVDKKIKD 1802
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-531 |
8.86e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 8.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 2 AQALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEfskAQKLCSQLEQLELENRQLKEgvpgaAG 81
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER---RRELEERLEELEEELAELEE-----EL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 82 AHVDGELLRLQAENTALQKNMAALQERYGKEAVRpsavgegqgdppgdvlptplapmpLAEVELKWEMEREEKKLLWEQL 161
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEA------------------------LLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 162 QGLESSKQAETSRLQEELAKLSEKLKKKQesfcRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQ 241
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLE----RLEEELEEL-EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 242 SLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSL---------------------------A 294
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLlaglrglagavavligveaayeaaleaA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 295 ALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRAN--SRLLEQLQEIGQEKEQLTQDLQE 372
Cdd:COG1196 544 LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGaaVDLVASDLREADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 373 ARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTREL 452
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569008864 453 ENLQHTVEELQAQVHSMDgakgwFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERD 531
Cdd:COG1196 704 EEERELAEAEEERLEEEL-----EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
9-586 |
1.30e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.30e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 9 EFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKA----QKLCSQLEQLELENRQLKEGVPGAAGAHV 84
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELeaqlEELESKLDELAEELAELEEKLEELKEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 85 D--GELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDVLptplapmpLAEVELKwEMEREEKKLLWEQLQ 162
Cdd:TIGR02168 355 SleAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE--------RLEARLE-RLEDRRERLQQEIEE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 163 GLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQ--RKEADLKAQLARTQKLQQELEAAN 240
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAaeRELAQLQARLDSLERLQENLEGFS 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 241 QSLAELRDQRQG---------------ERLEHA--AALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAK 303
Cdd:TIGR02168 506 EGVKALLKNQSGlsgilgvlselisvdEGYEAAieAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTE 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 304 TQELNMLREQTS--------------------------------------ELASELQH---------------------- 323
Cdd:TIGR02168 586 IQGNDREILKNIegflgvakdlvkfdpklrkalsyllggvlvvddldnalELAKKLRPgyrivtldgdlvrpggvitggs 665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 324 ---------RQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARksaekRKVMLDELAMETLQE 394
Cdd:TIGR02168 666 aktnssileRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS-----RQISALRKDLARLEA 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 395 KSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKG 474
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 475 WFERRLKEAEESLQQQQQEQEET------LKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTV 548
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLeeqieeLSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
650 660 670
....*....|....*....|....*....|....*...
gi 569008864 549 DGQRILEKKgsavLKDLKRQLHLERKRADKLQERLQEI 586
Cdd:TIGR02168 901 EELRELESK----RSELRRELEELREKLAQLELRLEGL 934
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
152-566 |
1.25e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.55 E-value: 1.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 152 EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESfCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQK 231
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE-AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 232 LQQELEAANQS--------LAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQvegllAENSALRTSlAALEQIQTAK 303
Cdd:PTZ00121 1520 EAKKADEAKKAeeakkadeAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE-----DKNMALRKA-EEAKKAEEAR 1593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 304 TQELNMLREQTSELASElQHRQAEYEELMGQK-------DDLNSQLQESLRANSRLLEQLQEigQEKEQLTQDLQEARKS 376
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAE-EAKKAEEAKIKAEElkkaeeeKKKVEQLKKKEAEEKKKAEELKK--AEEENKIKAAEEAKKA 1670
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 377 AEKRKvmldelAMETLQEKSQHKEELGAVRLRHEKEllgvrARYERELRELHEDKKRQEEELRgqiREEKARTRELENLQ 456
Cdd:PTZ00121 1671 EEDKK------KAEEAKKAEEDEKKAAEALKKEAEE-----AKKAEELKKKEAEEKKKAEELK---KAEEENKIKAEEAK 1736
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 457 HTVEElqaqvhsmdgakgwfERRlKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELqnVREQLQQAQEERDGHV-K 535
Cdd:PTZ00121 1737 KEAEE---------------DKK-KAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKRRMEVdK 1798
|
410 420 430
....*....|....*....|....*....|.
gi 569008864 536 TISNLKQEVKDTVDGQrileKKGSAVLKDLK 566
Cdd:PTZ00121 1799 KIKDIFDNFANIIEGG----KEGNLVINDSK 1825
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
151-703 |
1.27e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.55 E-value: 1.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 151 REEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESfcRLQTEKETLFNDSRNKIEELQQRKEADLK---AQLA 227
Cdd:PTZ00121 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA--KKADEAKKKAEEAKKKADAAKKKAEEAKKaaeAAKA 1350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 228 RTQKLQQELEAANQSlAELRDQRQGERLEHAAALRALQDQVsSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTqel 307
Cdd:PTZ00121 1351 EAEAAADEAEAAEEK-AEAAEKKKEEAKKKADAAKKKAEEK-KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK--- 1425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 308 nmlREQTSELASELQHRQAEYEelmgQKDDLNSQLQESLRANSrlLEQLQEIGQEKEQLTQDLQEARKSAE-KRKVMLDE 386
Cdd:PTZ00121 1426 ---KAEEKKKADEAKKKAEEAK----KADEAKKKAEEAKKAEE--AKKKAEEAKKADEAKKKAEEAKKADEaKKKAEEAK 1496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 387 LAMETLQEKSQHKEELGAVRLRHEKellgvraRYERELRELHEdkKRQEEELRGQIREEKA-RTRELENLQHTVEELQA- 464
Cdd:PTZ00121 1497 KKADEAKKAAEAKKKADEAKKAEEA-------KKADEAKKAEE--AKKADEAKKAEEKKKAdELKKAEELKKAEEKKKAe 1567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 465 QVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKgKDEELQNVREQLQQAQEERDGHVKTISNLKQEV 544
Cdd:PTZ00121 1568 EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAK-KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 545 KDTvDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEiltnskSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYR 624
Cdd:PTZ00121 1647 KKA-EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED------EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 625 EILKEKESSAIPARSLSSSPQAQPPRPAELS-DEEVAELFQRLAETQQEKWMLEEKVKHLEVSSASMAEDLCRKSAIIET 703
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKkDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
144-585 |
3.20e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.39 E-value: 3.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 144 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDS-RNKIEELQQRKEADL 222
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAaKKKAEEKKKADEAKK 1398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 223 KAQLAR-----TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALE 297
Cdd:PTZ00121 1399 KAEEDKkkadeLKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 298 QIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRA--NSRLLEQLQEIGQ-EKEQLTQDLQEAR 374
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaeEAKKADEAKKAEEkKKADELKKAEELK 1558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 375 KSAEKRKVmldelametlqEKSQHKEELGAVRLRHEKELLGV-RARYERELRELHEDKKRQEEELRGQiREEKARTRELE 453
Cdd:PTZ00121 1559 KAEEKKKA-----------EEAKKAEEDKNMALRKAEEAKKAeEARIEEVMKLYEEEKKMKAEEAKKA-EEAKIKAEELK 1626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 454 NlqhtVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREE--HAAELKGKDEELQNVREQLQQAQEERD 531
Cdd:PTZ00121 1627 K----AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDkkKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 569008864 532 gHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQE 585
Cdd:PTZ00121 1703 -KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
167-380 |
3.74e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.47 E-value: 3.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 167 SKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAEL 246
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKAL-LKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 247 RDQRQGERLEHAAALRALQDQ---------VSSQSA-DAQEQVEGLLAENSALRTSLAALEQIQT---AKTQELNMLREQ 313
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLgrqpplallLSPEDFlDAVRRLQYLKYLAPARREQAEELRADLAelaALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008864 314 TSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 380
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
170-562 |
1.87e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 1.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 170 AETSRLQEELAKLSEKLKKKQESFCRLQTEKETL--FNDSRNKIEELQQ----RKEADLKAQLARTQKLQQELEAANQSL 243
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAerYQALLKEKREYEGyellKEKEALERQKEAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 244 AELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAEnsaLRTSLAALEQIQTAKTQELNmlreqtsELASELQH 323
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE---LEAEIASLERSIAEKERELE-------DAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 324 RQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEarksaekrkvmLDELAMETLQEKSQHKEELG 403
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE-----------VDKEFAETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 404 AVRLRHEkELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELqaqvhsmdgakgwfERRLKea 483
Cdd:TIGR02169 396 KLKREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ--------------EWKLE-- 458
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569008864 484 eeslqqqqqeqeeTLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVL 562
Cdd:TIGR02169 459 -------------QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVH 524
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
148-459 |
4.56e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 4.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 148 EMEREEKKLLwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD---LKA 224
Cdd:TIGR02169 685 GLKRELSSLQ-SELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL-EELEEDLSSLEQEIENVkseLKE 762
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 225 QLARTQKLQQELEAANQSLAELRDQRQGERLEH-AAALRALQDQVSSQSADAQE---QVEGLLAENSALRTSLAALEQIQ 300
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALNDLEARLSHSRIPEiQAELSKLEEEVSRIEARLREieqKLNRLTLEKEYLEKEIQELQEQR 842
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 301 TAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 380
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 381 KVM-------LDELAMETLQEKSQHKEELGAVRLRHEKELLGVRAR------------YERELRELHEDKKRQE--EELR 439
Cdd:TIGR02169 923 KAKlealeeeLSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRalepvnmlaiqeYEEVLKRLDELKEKRAklEEER 1002
|
330 340
....*....|....*....|
gi 569008864 440 GQIREekaRTRELENLQHTV 459
Cdd:TIGR02169 1003 KAILE---RIEEYEKKKREV 1019
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
144-588 |
4.71e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.05 E-value: 4.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 144 ELKWEMER-EEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKE 219
Cdd:PRK02224 217 ELDEEIERyEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELaeeVRDLRERLEELEEERD 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 220 ----------ADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSAL 289
Cdd:PRK02224 297 dllaeaglddADAEAVEARREELEDRDEELRDRLEECR-VAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 290 RTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEsLRANSRLLEQLQEIGQEkeqltqd 369
Cdd:PRK02224 376 REAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAE-LEATLRTARERVEEAEA------- 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 370 LQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYER--ELRELH------EDKKRQEEELRGQ 441
Cdd:PRK02224 448 LLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERaeDLVEAEdrierlEERREDLEELIAE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 442 IREEKARTRE-LENLQHTVEELQAQvhsmdgAKGWFERRLKEAEESLQQQQQ-----EQEETLKLCRE---------EHA 506
Cdd:PRK02224 528 RRETIEEKRErAEELRERAAELEAE------AEEKREAAAEAEEEAEEAREEvaelnSKLAELKERIEslerirtllAAI 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 507 AELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGsavlkdlkrqlhlERKRADKLQERLQEI 586
Cdd:PRK02224 602 ADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEARE-------------DKERAEEYLEQVEEK 668
|
..
gi 569008864 587 LT 588
Cdd:PRK02224 669 LD 670
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
219-470 |
4.71e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 4.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 219 EADLKAQLARTQKLQQELEAANQSLAELRDQRqgERLEHAAALralqdqvssqsADAQEQVEGLLAENSALRTSLAALEQ 298
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQI--ELLEPIREL-----------AERYAAARERLAELEYLRAALRLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 299 iqtakTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslransrLLEQLQEI-GQEKEQLTQDLQEARKSA 377
Cdd:COG4913 287 -----QRRLELLEAELEELRAELARLEAELERLEARLDALREELDE-------LEAQIRGNgGDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 378 EKRKVMLDELAmetlqeksQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQH 457
Cdd:COG4913 355 EERERRRARLE--------ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA 426
|
250
....*....|...
gi 569008864 458 TVEELQAQVHSMD 470
Cdd:COG4913 427 EIASLERRKSNIP 439
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-369 |
4.78e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 4.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 4 ALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKLCSQLEQ-LELENRQLKEGVPGAAGA 82
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEErIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 83 HVDGELLRLQAEntALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDVLPTPLAPMPLAEVELKWEMEREEKKLLWEQLQ 162
Cdd:TIGR02168 767 EERLEEAEEELA--EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 163 GLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDsRNKIEELQQRKEADLKAQLARTQKLQQELEAANQS 242
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA-LALLRSELEELSEELRELESKRSELRRELEELREK 923
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 243 LAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQiQTAKTQELNMLREQtselaselq 322
Cdd:TIGR02168 924 LAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLEN-KIKELGPVNLAAIE--------- 993
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 569008864 323 hrqaEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQD 369
Cdd:TIGR02168 994 ----EYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKD 1036
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
148-698 |
5.63e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.07 E-value: 5.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 148 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSE----KLKKKQESFCRLQTEKETlfnDSRNKIEELQQRKEADlK 223
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDakrvEIARKAEDARKAEEARKA---EDAKKAEAARKAEEVR-K 1189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 224 AQLARTQKLQQELEAANQSLAELR--DQRQGERLEHAAALRALQD-QVSSQSADAQEQVEGLLAENSALRTSLAALEQIQ 300
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARKAEEERKaeEARKAEDAKKAEAVKKAEEaKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQ 1269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 301 TAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANsRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 380
Cdd:PTZ00121 1270 AAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD-EAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 381 KVMLDELAMETlqEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRG--QIREEKARTRELENLQHT 458
Cdd:PTZ00121 1349 KAEAEAAADEA--EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKadELKKAAAAKKKADEAKKK 1426
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 459 VEELQA---------QVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREE--HAAELKGKDEELQNVREQLQQAQ 527
Cdd:PTZ00121 1427 AEEKKKadeakkkaeEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEakKADEAKKKAEEAKKKADEAKKAA 1506
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 528 EERDghvKTISNLKQEVKDTVDGQRILEKKGSAvlKDLKRQlhLERKRADKLQeRLQEILTNSKSRTGLEELVLSEMNSP 607
Cdd:PTZ00121 1507 EAKK---KADEAKKAEEAKKADEAKKAEEAKKA--DEAKKA--EEKKKADELK-KAEELKKAEEKKKAEEAKKAEEDKNM 1578
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 608 SRTQTGDSSSVSSFSYREILK-EKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVS 686
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKlYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEE 1658
|
570
....*....|..
gi 569008864 687 SASMAEDLCRKS 698
Cdd:PTZ00121 1659 NKIKAAEEAKKA 1670
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
216-461 |
1.54e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 216 QRKEADLKAQLARtqkLQQELEAANQSLAELRDQRQgERLEHAAALRALQDQVSSQ--SADAQEQVEGLLAENSALRTSL 293
Cdd:COG4913 609 RAKLAALEAELAE---LEEELAEAEERLEALEAELD-ALQERREALQRLAEYSWDEidVASAEREIAELEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 294 AALEQiqtaktqelnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEA 373
Cdd:COG4913 685 DDLAA-----------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 374 RKSAEKRKVMLDELAMETLQEKSQHKEELGavrlRHEKELLGVRAR---------------------YERELRELHEDK- 431
Cdd:COG4913 754 RFAAALGDAVERELRENLEERIDALRARLN----RAEEELERAMRAfnrewpaetadldadleslpeYLALLDRLEEDGl 829
|
250 260 270
....*....|....*....|....*....|
gi 569008864 432 KRQEEELRGQIREEKarTRELENLQHTVEE 461
Cdd:COG4913 830 PEYEERFKELLNENS--IEFVADLLSKLRR 857
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
30-452 |
3.16e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 3.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 30 ELRKNGVELSSLRQKVAYLDKEFSKAQKLCSQLEQLELENRQLKEgvpgaagahvdgellRLQAENTALQKNMAALQERY 109
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE---------------ELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 110 gkeavrpsavgegqgdppgdvlptplapmplaevelkwemereekkllwEQLQGLESSKQAETSRLQEELAKLSEKLKKK 189
Cdd:TIGR02168 743 -------------------------------------------------EQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 190 QESFCRLQTEKETLfndsrnkiEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDqVS 269
Cdd:TIGR02168 774 EEELAEAEAEIEEL--------EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED-LE 844
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 270 SQSADAQEQVEGLLAENSALRTSLAALEqiqtaktQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRAN 349
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELE-------SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 350 SRLLEQLQEIGQEKEQLTQDLQEARKS-AEKRKVMLDELA-----METLQEKSQHK--------EELGAVRLRHEKELLG 415
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEalenkIEDDEEEARRRlkrlenkiKELGPVNLAAIEEYEE 997
|
410 420 430
....*....|....*....|....*....|....*..
gi 569008864 416 VRARYErELRELHEDKKRQEEELRGQIREEKARTREL 452
Cdd:TIGR02168 998 LKERYD-FLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
144-348 |
4.40e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 4.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 144 ELKWEMEREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLK 223
Cdd:COG4942 31 QLQQEIAELEKEL--AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAEL-EKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 224 AQLARTQKL-----------QQELEAANQSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTS 292
Cdd:COG4942 108 ELLRALYRLgrqpplalllsPEDFLDAVRRLQYLKYLAP-ARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 569008864 293 LAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRA 348
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
174-382 |
5.64e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 5.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 174 RLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD-----LKAQLARTQKLQQELEAANQSLAELRD 248
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDAL-QERREALQRLAEYSWDEidvasAEREIAELEAELERLDASSDDLAALEE 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 249 QRQGERLEHaAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQEL-------NMLREQTSELASEL 321
Cdd:COG4913 693 QLEELEAEL-EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALleerfaaALGDAVERELRENL 771
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008864 322 QHRQAEYEELMGQK---------------DDLNSQLQESLRANSRLLEQLQEIGQEK-EQLTQDLQEARKSAEKRKV 382
Cdd:COG4913 772 EERIDALRARLNRAeeeleramrafnrewPAETADLDADLESLPEYLALLDRLEEDGlPEYEERFKELLNENSIEFV 848
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
152-580 |
6.55e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 6.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 152 EEKKLLWEQLQGLESsKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfnDSRNKIEELQQRKEAdLKAQLARTQK 231
Cdd:COG4717 71 KELKELEEELKEAEE-KEEEYAELQEELEELEEELEELEAELEELREELEKL--EKLLQLLPLYQELEA-LEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 232 LQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLR 311
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 312 EQTSELASELQhRQAEYEELMGQKDDLNSQ-LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAME 390
Cdd:COG4717 227 EELEQLENELE-AAALEERLKEARLLLLIAaALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 391 TLQEKSqHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARtRELENLQHTVEEL--QAQVHS 468
Cdd:COG4717 306 ELQALP-ALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE-LQLEELEQEIAALlaEAGVED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 469 MDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKD---EELQNVREQLQQAQEERDGHVKTISNLKQEVK 545
Cdd:COG4717 384 EEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeleEELEELEEELEELEEELEELREELAELEAELE 463
|
410 420 430
....*....|....*....|....*....|....*
gi 569008864 546 DTVDGQRILEKKgsAVLKDLKRQLHLERKRADKLQ 580
Cdd:COG4717 464 QLEEDGELAELL--QELEELKAELRELAEEWAALK 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
215-591 |
6.96e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 6.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 215 QQRKEADLK-----AQLARTQKLQQELEAANQSLaelrdQRQGER----LEHAAALRALQDQVSSQSAD-AQEQVEGLLA 284
Cdd:TIGR02168 172 ERRKETERKlertrENLDRLEDILNELERQLKSL-----ERQAEKaeryKELKAELRELELALLVLRLEeLREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 285 ENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKE 364
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 365 QLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEelgavrlrhekellgvraryereLRELHEDKKRQEEELRGQIRE 444
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEE-----------------------LEAELEELESRLEELEEQLET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 445 EKARTRELENlqhTVEELQAQVHSMDgakgwferrlkeaeES----LQQQQQEQEETLKLCREEHAAELKGKDEELQNVR 520
Cdd:TIGR02168 384 LRSKVAQLEL---QIASLNNEIERLE--------------ARlerlEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008864 521 EQLQQAQEERDGHVKTISNLKQEVkdtvdgqrileKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSK 591
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREEL-----------EEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-592 |
7.45e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 7.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 2 AQALSEEEFQRMQTQLLELRTNNY-----QLSDELRKNGVELSSLRQKVAYLDKEFSKAQklcSQLEQLELENRQLKEGV 76
Cdd:TIGR02168 207 RQAEKAERYKELKAELRELELALLvlrleELREELEELQEELKEAEEELEELTAELQELE---EKLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 77 pgaagAHVDGELLRLQAENTALQKNMAALQERYgKEAVRPSAVGEGQgdppgdvlptplapmpLAEVELKWEMEREEKKL 156
Cdd:TIGR02168 284 -----EELQKELYALANEISRLEQQKQILRERL-ANLERQLEELEAQ----------------LEELESKLDELAEELAE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 157 LWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLF------NDSRNKIEELqqrkEADLKAQLARTQ 230
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAqlelqiASLNNEIERL----EARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 231 KLQQELEAANQSLAELRDQRQGERL-----------EHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQI 299
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELeeleeeleelqEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 300 QTAKTQELNMLREQTSE---------LASELQHRQAEYE--------ELMG---------QKDDLNSQLQESL------- 346
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNqsglsgilgVLSELISVDEGYEaaieaalgGRLQavvvenlnaAKKAIAFLKQNELgrvtflp 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 347 -------RANSRLLEQLQEIGQEKeQLTQDLQEARKSAEK-------RKVMLDELAMETLQEKSQHKEEL---------- 402
Cdd:TIGR02168 578 ldsikgtEIQGNDREILKNIEGFL-GVAKDLVKFDPKLRKalsyllgGVLVVDDLDNALELAKKLRPGYRivtldgdlvr 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 403 --GAVRLRHEKELLGVRARyERELRELHEDKKRQEEELRgqireekARTRELENLQHTVEELQAQVHSMDGAKGWFERRL 480
Cdd:TIGR02168 657 pgGVITGGSAKTNSSILER-RREIEELEEKIEELEEKIA-------ELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 481 KEAEESLQQQQQEQEEtlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSA 560
Cdd:TIGR02168 729 SALRKDLARLEAEVEQ-----LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE 803
|
650 660 670
....*....|....*....|....*....|..
gi 569008864 561 VLKDLKRQLHLERKRADKLQERLQEILTNSKS 592
Cdd:TIGR02168 804 ALDELRAELTLLNEEAANLRERLESLERRIAA 835
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-455 |
9.58e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 9.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 2 AQALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKLCSQLEQLELENRQLKEGVPGAAG 81
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 82 AHVDgELLRLQAENTALQKNMAALQERYGKEAVRpsavgegqgdppgdvlptplapmpLAEVELKWEMEREEKKLLwEQL 161
Cdd:COG1196 383 ELAE-ELLEALRAAAELAAQLEELEEAEEALLER------------------------LERLEEELEELEEALAEL-EEE 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 162 QGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQ 241
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLL 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 242 SLA---------ELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEgLLAENSALRTSLAALEQIQTAKTQELNMLRE 312
Cdd:COG1196 517 AGLrglagavavLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIE-YLKAAKAGRATFLPLDKIRARAALAAALARG 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 313 QTSELASELQHRQAEYEELM-----------------------------------GQKDDLNSQLQESLRANSRLLEQLQ 357
Cdd:COG1196 596 AIGAAVDLVASDLREADARYyvlgdtllgrtlvaarleaalrravtlagrlrevtLEGEGGSAGGSLTGGSRRELLAALL 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 358 EIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEE 437
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
490 500
....*....|....*....|....
gi 569008864 438 LRGQIREEKAR------TRELENL 455
Cdd:COG1196 756 LPEPPDLEELErelerlEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
252-592 |
1.24e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 252 GERLEHAAALRALQDQVSSQSAdaQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEEL 331
Cdd:TIGR02169 658 GSRAPRGGILFSRSEPAELQRL--RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 332 MGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvmlDELAMETLQEKsqhkeelgavrlrhek 411
Cdd:TIGR02169 736 KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE---ARLSHSRIPEI---------------- 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 412 ellgvraryERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEaeeslqqqq 491
Cdd:TIGR02169 797 ---------QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN--------- 858
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 492 qeqeetLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTvdgqrilekkgSAVLKDLKRQLHL 571
Cdd:TIGR02169 859 ------LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL-----------EAQIEKKRKRLSE 921
|
330 340
....*....|....*....|.
gi 569008864 572 ERKRADKLQERLQEILTNSKS 592
Cdd:TIGR02169 922 LKAKLEALEEELSEIEDPKGE 942
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
142-585 |
1.63e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 142 EVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsrnkieELQQRKEAD 221
Cdd:TIGR00618 191 SLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQ---------EEQLKKQQL 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 222 LKAQLARTQKLQQELEAANQSLAELRDQRQGERL-EHAAALRALQDQVSSQSADAQEQvEGLLAENSALRTSLAALEQIQ 300
Cdd:TIGR00618 262 LKQLRARIEELRAQEAVLEETQERINRARKAAPLaAHIKAVTQIEQQAQRIHTELQSK-MRSRAKLLMKRAAHVKQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 301 TAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNS--QLQESLRAnsrLLEQLQEIGQEKEQLTQDL-QEARKSA 377
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHihTLQQQKTT---LTQKLQSLCKELDILQREQaTIDTRTS 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 378 EKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRgQIREEKARTRELEnlQH 457
Cdd:TIGR00618 418 AFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKE-QIHLQETRKKAVV--LA 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 458 TVEELQAQVHSmdgakgwFERRLKEAEESLQQQQQEQEETLKLCREE-----HAAELKGKDEELQNVREQLQQAQEERDG 532
Cdd:TIGR00618 495 RLLELQEEPCP-------LCGSCIHPNPARQDIDNPGPLTRRMQRGEqtyaqLETSEEDVYHQLTSERKQRASLKEQMQE 567
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 569008864 533 HVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQE 585
Cdd:TIGR00618 568 IQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRK 620
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
195-456 |
1.65e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 195 RLQTEKETLFNDSRNKIEElqqRKEADLKAQLARtqkLQQELEAANQSLAELRDQRqgerlEHAAALRALQDQVSSQSAD 274
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEE---KEEKDLHERLNG---LESELAELDEEIERYEEQR-----EQARETRDEADEVLEEHEE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 275 AQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAE--------------YEELMGQKDDLNS 340
Cdd:PRK02224 249 RREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEaglddadaeavearREELEDRDEELRD 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 341 QLQ-------------ESLRANSRLLE-QLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELametlqeksqhKEELGAVR 406
Cdd:PRK02224 329 RLEecrvaaqahneeaESLREDADDLEeRAEELREEAAELESELEEAREAVEDRREEIEEL-----------EEEIEELR 397
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 569008864 407 LRHE--KELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQ 456
Cdd:PRK02224 398 ERFGdaPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALL 449
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
196-546 |
1.82e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.66 E-value: 1.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 196 LQTEKETLFNDSRNKIEELQQRKEAdlkaqlaRTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADA 275
Cdd:pfam15921 243 VEDQLEALKSESQNKIELLLQQHQD-------RIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMY 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 276 QEQVEGLLAENSALRTSLAALEQIQTAKTQElnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLranSRLLEQ 355
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL---ADLHKR 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 356 LQEIGQEKEQ----LTQDLQEARKSAEKRKvMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYE--RELRELHE 429
Cdd:pfam15921 390 EKELSLEKEQnkrlWDRDTGNSITIDHLRR-ELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNEslEKVSSLTA 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 430 DKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHaaeL 509
Cdd:pfam15921 469 QLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQ---------EKERAIEATNAEITKLRSRVDLKLQELQH---L 536
|
330 340 350
....*....|....*....|....*....|....*..
gi 569008864 510 KGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKD 546
Cdd:pfam15921 537 KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIEN 573
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
140-469 |
2.01e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.31 E-value: 2.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 140 LAEVELKWEMEREEKKLLWEQLQGLESsKQAETSRLQEELAKLSEKLKKKQESFCRLQT----EKETLFNDSRNKIEELQ 215
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEE-RLEELRELEEELEELEAELAELQEELEELLEqlslATEEELQDLAEELEELQ 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 216 QRK---EADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTS 292
Cdd:COG4717 206 QRLaelEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 293 LAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQE 372
Cdd:COG4717 286 LALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 373 ARkSAEKRKVMLDELAMETLQEKSQHkeelgAVRLRHEKELLGVRARYERELREL---------HEDKKRQEEELRGQIR 443
Cdd:COG4717 366 EE-LEQEIAALLAEAGVEDEEELRAA-----LEQAEEYQELKEELEELEEQLEELlgeleelleALDEEELEEELEELEE 439
|
330 340
....*....|....*....|....*.
gi 569008864 444 EEKARTRELENLQHTVEELQAQVHSM 469
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQL 465
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
7-365 |
3.23e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 3.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKlcsQLEQLELENRQLKEGVpgaagAHVDG 86
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEK---EIEQLEQEEEKLKERL-----EELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 87 ELLRLQAENTALQKNMAALQERygkeavrpsavgegqgdppgdvlptpLAPMPLAEVELKWEMEREEKKLL---WEQLQG 163
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEAR--------------------------IEELEEDLHKLEEALNDLEARLShsrIPEIQA 798
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 164 LESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSR---NKIEELQQRKEaDLKAQLARTQKLQQELEAAN 240
Cdd:TIGR02169 799 ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIdlkEQIKSIEKEIE-NLNGKKEELEEELEELEAAL 877
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 241 QSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSE--LA 318
Cdd:TIGR02169 878 RDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLedVQ 957
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008864 319 SELQHRQA--------------EYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQ 365
Cdd:TIGR02169 958 AELQRVEEeiralepvnmlaiqEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
274-454 |
7.74e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 7.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 274 DAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEY--EELMGQKDDLNSQLQEsLRANSR 351
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELER-LDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 352 LLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDElAMETLQEksQHKEELGAVRLRHEKELLGVRARYERELRELHEDK 431
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEK-ELEQAEE--ELDELQDRLEAAEDLARLELRALLEERFAAALGDA 762
|
170 180
....*....|....*....|....*
gi 569008864 432 KRQE--EELRGQIREEKARTRELEN 454
Cdd:COG4913 763 VERElrENLEERIDALRARLNRAEE 787
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
358-611 |
7.76e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 7.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 358 EIGQEKEQLTQDLQEARKSAEKRKVMLDELA--METLQEKSQHKEELGAVRLRHEkellgvraryERELRELHEDKKRQE 435
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRqqLERLRREREKAERYQALLKEKR----------EYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 436 EELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEE 515
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 516 LQNVREQLQQAQEERDGHVKTISNLKQEVKDtvdgQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTG 595
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250
....*....|....*.
gi 569008864 596 LEELVLSEMNSPSRTQ 611
Cdd:TIGR02169 393 KLEKLKREINELKREL 408
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
177-349 |
8.36e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 8.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 177 EELAKLSEKLKKKQESFCRLQTEKETL--FNDSR--NKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQ- 251
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALrlWFAQRrlELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRg 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 252 --GERLEHAAA-LRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEY 328
Cdd:COG4913 335 ngGDRLEQLEReIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL 414
|
170 180
....*....|....*....|.
gi 569008864 329 EELMGQKDDLNSQLqESLRAN 349
Cdd:COG4913 415 RDLRRELRELEAEI-ASLERR 434
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
2-593 |
9.42e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.45 E-value: 9.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 2 AQALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELsslRQKVAYLDKEFSKAQklcSQLEQLELENRQ-LKEGVPGAA 80
Cdd:pfam12128 270 DETLIASRQEERQETSAELNQLLRTLDDQWKEKRDEL---NGELSAADAAVAKDR---SELEALEDQHGAfLDADIETAA 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 81 G-----AHVDGELLRLQAENTALQKNMAALQERYGKeavRPSAVGEGQGDPpgdvlptplapmpLAEVELKWEMEREEKK 155
Cdd:pfam12128 344 AdqeqlPSWQSELENLEERLKALTGKHQDVTAKYNR---RRSKIKEQNNRD-------------IAGIKDKLAKIREARD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 156 LlweQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADlkaqlARTQKLQQE 235
Cdd:pfam12128 408 R---QLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFD-----ERIERAREE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 236 LEAANQSLAELRDQRQGER-----------------LEHAAALRALQDQ-----------VSSQSADAQEQVEGLLAENS 287
Cdd:pfam12128 480 QEAANAEVERLQSELRQARkrrdqasealrqasrrlEERQSALDELELQlfpqagtllhfLRKEAPDWEQSIGKVISPEL 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 288 ALRTSLAAlEQIQTAKTQELNM----LREQTSELASELQHRQAEYEELmgqkDDLNSQLQESLRANSRLLEQLQEIGQEK 363
Cdd:pfam12128 560 LHRTDLDP-EVWDGSVGGELNLygvkLDLKRIDVPEWAASEEELRERL----DKAEEALQSAREKQAAAEEQLVQANGEL 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 364 EQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVraryERELRELHEDKKRQEEELRGQIR 443
Cdd:pfam12128 635 EKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSL----EAQLKQLDKKHQAWLEEQKEQKR 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 444 EekARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAeeslqqqqqeqeetLKLCREEHAAELKGKDEELQNV---- 519
Cdd:pfam12128 711 E--ARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAE--------------LKALETWYKRDLASLGVDPDVIaklk 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 520 --REQLQQ--AQEERDGHVKTI-------------SNLKQEVKDTVDGQRILEKKGSAVLKDLKR---QLHLERKRADKL 579
Cdd:pfam12128 775 reIRTLERkiERIAVRRQEVLRyfdwyqetwlqrrPRLATQLSNIERAISELQQQLARLIADTKLrraKLEMERKASEKQ 854
|
650
....*....|....
gi 569008864 580 QERLQEILTNSKSR 593
Cdd:pfam12128 855 QVRLSENLRGLRCE 868
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
150-560 |
9.56e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 9.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 150 EREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsrnKIEELQQRKEaDLKAQLART 229
Cdd:PRK03918 287 ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE--------RLEELKKKLK-ELEKRLEEL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 230 QKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLA----ALEQIQTAKT- 304
Cdd:PRK03918 358 EERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKelkkAIEELKKAKGk 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 305 -----------QELNMLREQTSELA---SELQHRQAEYEELMGQKDDLNSQL--QESLRANSRLLEQLQEIGQE-KEQLT 367
Cdd:PRK03918 438 cpvcgrelteeHRKELLEEYTAELKrieKELKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKlKKYNL 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 368 QDLQEARKSAEKRKVMLDELAME--TLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIRE- 444
Cdd:PRK03918 518 EELEKKAEEYEKLKEKLIKLKGEikSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKEl 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 445 -------------EKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKG 511
Cdd:PRK03918 598 epfyneylelkdaEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAG 677
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 569008864 512 KDEELQNVREQLQQAQeerdghvKTISNLKQEVKDTVDGQRILEKKGSA 560
Cdd:PRK03918 678 LRAELEELEKRREEIK-------KTLEKLKEELEEREKAKKELEKLEKA 719
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
136-464 |
1.01e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 136 APMPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSE-----------------KLKKKQESFCRLQT 198
Cdd:PRK02224 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphveTIEEDRERVEELEA 482
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 199 EKETLfndsRNKIEELQQRKEA--DLKAQLARTQKLQQELEAANQSLAELRDqRQGERLEHAAALRALQDQVSSQSADAQ 276
Cdd:PRK02224 483 ELEDL----EEEVEEVEERLERaeDLVEAEDRIERLEERREDLEELIAERRE-TIEEKRERAEELRERAAELEAEAEEKR 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 277 EQVEGLLAENSALRTSLAALEQIQTAKTQELNMLrEQTSELASELQHRQAEYEELMGQKDDLNSQlqeslraNSRLLEQL 356
Cdd:PRK02224 558 EAAAEAEEEAEEAREEVAELNSKLAELKERIESL-ERIRTLLAAIADAEDEIERLREKREALAEL-------NDERRERL 629
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 357 QEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEElgavrlrHEKELLGVRARYERELRELhedkkrqeE 436
Cdd:PRK02224 630 AEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELRE-------ERDDLQAEIGAVENELEEL--------E 694
|
330 340
....*....|....*....|....*...
gi 569008864 437 ELRGQIREEKARTRELENLQHTVEELQA 464
Cdd:PRK02224 695 ELRERREALENRVEALEALYDEAEELES 722
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
144-468 |
1.08e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 144 ELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLK 223
Cdd:pfam02463 174 ALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 224 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAK 303
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 304 TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVM 383
Cdd:pfam02463 334 KEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 384 LDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQ 463
Cdd:pfam02463 414 ARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ 493
|
....*
gi 569008864 464 AQVHS 468
Cdd:pfam02463 494 KLEER 498
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
269-469 |
1.21e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 269 SSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEY-------EELMGQKDDLNSQ 341
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELaaleaelAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 342 LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELA------METLQEKSQHKEELGAVRLRHEKELLG 415
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAparreqAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 569008864 416 VRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSM 469
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
211-412 |
1.36e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 211 IEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQrqgerLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALR 290
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEK-----EEEYAELQEELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 291 TSLAALEQIQtaKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslrANSRLLEQLQEIGQEKEQLTQDL 370
Cdd:COG4717 123 KLLQLLPLYQ--ELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE---LQEELEELLEQLSLATEEELQDL 197
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 569008864 371 QEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 412
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
174-466 |
1.91e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 48.41 E-value: 1.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 174 RLQEELAKLSEKLKKKQESFCRLQTEKEtlfnDSRNKIEELQQRKEaDLKAQLArtqKLQQELEAA-------NQSLAEL 246
Cdd:PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQE----ENEARAEAAEEEVD-ELKSQLA---DYQQALDVQqtraiqyQQAVQAL 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 247 RDQRQgerLEHAAALRA--LQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAktqeLNMLREQTSELASELQHR 324
Cdd:PRK04863 424 ERAKQ---LCGLPDLTAdnAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQA----YQLVRKIAGEVSRSEAWD 496
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 325 QAEyeELMGQkddlnsqlQESLRAnsrLLEQLQEIGQEKEQLTQDLQEARkSAEKrkvMLDELAMEtLQEKSQHKEELGA 404
Cdd:PRK04863 497 VAR--ELLRR--------LREQRH---LAEQLQQLRMRLSELEQRLRQQQ-RAER---LLAEFCKR-LGKNLDDEDELEQ 558
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 569008864 405 VRLRHEKELLGVRArYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 466
Cdd:PRK04863 559 LQEELEARLESLSE-SVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQS 619
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
239-466 |
1.95e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 239 ANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSlaaleqiqtaktQELNMLREQTSELA 318
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLS------------EEAKLLLQQLSELE 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 319 SELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLE--QLQEIGQEKEQLTQDLQEARksaekrkvmldelamETLQEKS 396
Cdd:COG3206 226 SQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELS---------------ARYTPNH 290
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 569008864 397 ----QHKEELGAVRLRHEKELLGVRARYERELRELhedkKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 466
Cdd:COG3206 291 pdviALRAQIAALRAQLQQEAQRILASLEAELEAL----QAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
210-428 |
3.21e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.32 E-value: 3.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 210 KIEEL-QQRKEADLKA-----QLARTQKLQQELEAAN-QSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVEGL 282
Cdd:PHA02562 175 KIRELnQQIQTLDMKIdhiqqQIKTYNKNIEEQRKKNgENIARKQNKYD-ELVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 283 LAENSALRTSLAALE-QIQTAK---------------TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESL 346
Cdd:PHA02562 254 SAALNKLNTAAAKIKsKIEQFQkvikmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 347 RANSRLLEQLQEIGQEKeqltQDLQEARKSAEKRKVMLDELAMETLqeksQHKEELGAVRlRHEKELLGVRARYERELRE 426
Cdd:PHA02562 334 EQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFV----DNAEELAKLQ-DELDKIVKTKSELVKEKYH 404
|
..
gi 569008864 427 LH 428
Cdd:PHA02562 405 RG 406
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
292-559 |
3.31e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 3.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 292 SLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQ 371
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 372 EARKSAEKRKVMLDELaMETLQEKSQHKEELGAVRLRHEKELLgVRARYereLRELHEDKKRQEEELRGQIREEKARTRE 451
Cdd:COG4942 94 ELRAELEAQKEELAEL-LRALYRLGRQPPLALLLSPEDFLDAV-RRLQY---LKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 452 LENLQHTVEELQAQVhsmdgakgwferrlkeaeeslqQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERD 531
Cdd:COG4942 169 LEAERAELEALLAEL----------------------EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250 260
....*....|....*....|....*...
gi 569008864 532 GHVKTISNLKQEVKDTVDGQRILEKKGS 559
Cdd:COG4942 227 ALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
214-448 |
3.54e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 3.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 214 LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEH-AAALRALQDQVSSQSADAQEQVEGLLAENSALRTS 292
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNgLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 293 LAALEQIQTAKTQELNMLRE--QTSELASELQHRQAEYEELMGQKDDLNSQLQEslrANSRLLEQLQEIGQEKEQLTQDL 370
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTPNHPDVIA---LRAQIAALRAQLQQEAQRILASL 318
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 569008864 371 QEARKSAEKRKVMLDElAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELrelhedKKRQEEELRGQIREEKAR 448
Cdd:COG3206 319 EAELEALQAREASLQA-QLAQLEARLAELPELEAELRRLEREVEVARELYESLL------QRLEEARLAEALTVGNVR 389
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
169-460 |
4.09e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.64 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 169 QAETSRLQEELAKLSEKLKKKQ---ESFCRLQTEKETLF--NDSRNKIEELQQRK---EADLKAQLARTQKLQQELEAAN 240
Cdd:PRK04863 792 RAEREELAERYATLSFDVQKLQrlhQAFSRFIGSHLAVAfeADPEAELRQLNRRRvelERALADHESQEQQQRSQLEQAK 871
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 241 QSLAELR----------DQRQGERLEHAAA--LRALQDQVS-SQSADAQEQVEGLLaenSALRTSLAALEQIQTAKTQEL 307
Cdd:PRK04863 872 EGLSALNrllprlnllaDETLADRVEEIREqlDEAEEAKRFvQQHGNALAQLEPIV---SVLQSDPEQFEQLKQDYQQAQ 948
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 308 NMLRE--QTSELASELQHRQAE--YEE---LMGQKDDLNSQLQESLR----ANSRLLEQLQEIGQEKEQLTQDLQEARKS 376
Cdd:PRK04863 949 QTQRDakQQAFALTEVVQRRAHfsYEDaaeMLAKNSDLNEKLRQRLEqaeqERTRAREQLRQAQAQLAQYNQVLASLKSS 1028
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 377 AEKRKVMLDELAMEtLQEKSQHKEELGAVRLRHEKELLGVRARYERELR-ELHEDKKRQEEELRGQIREEKARTRELENL 455
Cdd:PRK04863 1029 YDAKRQMLQELKQE-LQDLGVPADSGAEERARARRDELHARLSANRSRRnQLEKQLTFCEAEMDNLTKKLRKLERDYHEM 1107
|
....*
gi 569008864 456 QHTVE 460
Cdd:PRK04863 1108 REQVV 1112
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
205-465 |
5.32e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 5.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 205 NDSRNKIEELQQRK--EADLKAqlartqkLQQELEAANQSLAELRDQRQgerleHAAALRALQDQVSSQSADAQEQVEGL 282
Cdd:PRK11281 39 ADVQAQLDALNKQKllEAEDKL-------VQQDLEQTLALLDKIDRQKE-----ETEQLKQQLAQAPAKLRQAQAELEAL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 283 LAENSAL------RTSLAALEQIQTAKTQELNMLREQTSELASEL--QHRQAEyeelmgqkddlnsQLQESLRANSrllE 354
Cdd:PRK11281 107 KDDNDEEtretlsTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLvsLQTQPE-------------RAQAALYANS---Q 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 355 QLQEIGQEKEQLTQDlqEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLrheKELLGVRaryeRELRELHEDkkRQ 434
Cdd:PRK11281 171 RLQQIRNLLKGGKVG--GKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQL---QDLLQKQ----RDYLTARIQ--RL 239
|
250 260 270
....*....|....*....|....*....|.
gi 569008864 435 EEELrgQIREEKARTRELENLQHTVEELQAQ 465
Cdd:PRK11281 240 EHQL--QLLQEAINSKRLTLSEKTVQEAQSQ 268
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
141-399 |
6.80e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.67 E-value: 6.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 141 AEVELKWEMEREEKKLLWEQLQGLESSK-QAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKE 219
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 220 ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQ-DQVSSQSADAQEQVEGLL--AENSALRTSLAAL 296
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaEELKKAEEENKIKAEEAKkeAEEDKKKAEEAKK 1751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 297 EQIQTAKTQELNMLREQTSELASELQHRQAEyEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKS 376
Cdd:PTZ00121 1752 DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE-EELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS 1830
|
250 260
....*....|....*....|...
gi 569008864 377 AEKRKVMLDELAMETLQEKSQHK 399
Cdd:PTZ00121 1831 AIKEVADSKNMQLEEADAFEKHK 1853
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
182-586 |
7.03e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 7.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 182 LSEKLKKKQESFCRLQTEKETLFNDSRNKIEE---LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQG-ERLEH 257
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEelkEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKlEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 258 AAALRALQDQVSSQSADAQEQVEGL---LAENSALRTSLAALEQIQTAKTQELNMLREQTS-ELASELQHRQAEYEELMG 333
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELeerLEELRELEEELEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 334 QKddlnSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKEL 413
Cdd:COG4717 207 RL----AELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLV 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 414 LGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQH--------TVEELQAQVHSMDGAKGWFERRLKEAEE 485
Cdd:COG4717 283 LGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAalglppdlSPEELLELLDRIEELQELLREAEELEEE 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 486 SLQQQQQEQEETL-KLCREEHAAELKGKDEELQNvREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKkgsavLKD 564
Cdd:COG4717 363 LQLEELEQEIAALlAEAGVEDEEELRAALEQAEE-YQELKEELEELEEQLEELLGELEELLEALDEEELEEE-----LEE 436
|
410 420
....*....|....*....|..
gi 569008864 565 LKRQLHLERKRADKLQERLQEI 586
Cdd:COG4717 437 LEEELEELEEELEELREELAEL 458
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
208-465 |
7.09e-05 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 46.56 E-value: 7.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 208 RNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQ-----------RQGERLEHAAALRALQDQVSSQSADAQ 276
Cdd:pfam05667 242 KRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSfsgssttdtglTKGSRFTHTEKLQFTNEAPAATSSPPT 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 277 EQVEgllaensalrtslaaLEQIQTAKTQELNMLREQTSELASELQhrqaEYEELMGQKDDLNSQLQESLRANSRLLEQL 356
Cdd:pfam05667 322 KVET---------------EEELQQQREEELEELQEQLEDLESSIQ----ELEKEIKKLESSIKQVEEELEELKEQNEEL 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 357 QEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEElgavrlrHEKELLgvrARYeRELRELHEDKKRQEE 436
Cdd:pfam05667 383 EKQYKVKKKTLDLLPDAEENIAKLQALVDASA-QRLVELAGQWEK-------HRVPLI---EEY-RALKEAKSNKEDESQ 450
|
250 260
....*....|....*....|....*....
gi 569008864 437 ELRGQIREEKARTRELENLQHTVEELQAQ 465
Cdd:pfam05667 451 RKLEEIKELREKIKEVAEEAKQKEELYKQ 479
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
145-591 |
8.60e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 8.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 145 LKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKkqesfcRLQTEKETLFNDSRNKIEELQQRKEADLKA 224
Cdd:TIGR00618 245 LTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINR------ARKAAPLAAHIKAVTQIEQQAQRIHTELQS 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 225 QLA-RTQKLQQELEAANQSlAELRDQRQGERLEHAaalralQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAK 303
Cdd:TIGR00618 319 KMRsRAKLLMKRAAHVKQQ-SSIEEQRRLLQTLHS------QEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTL 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 304 TQELNMLREQTSELASE---LQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 380
Cdd:TIGR00618 392 TQKLQSLCKELDILQREqatIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKER 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 381 KVMLDELAMETLQEKSQHKEELGAVRLRHEKELlgvraryERELRELHEDKKRQeeelrgQIREEKARTRELENLQHTVE 460
Cdd:TIGR00618 472 EQQLQTKEQIHLQETRKKAVVLARLLELQEEPC-------PLCGSCIHPNPARQ------DIDNPGPLTRRMQRGEQTYA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 461 ELQAQVHSMDGaKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNL 540
Cdd:TIGR00618 539 QLETSEEDVYH-QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHAL 617
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 569008864 541 KQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSK 591
Cdd:TIGR00618 618 LRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
144-454 |
9.62e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.12 E-value: 9.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 144 ELKWEMEREEKKLLWEQLQGLESSKQAETSRL--QEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRK--- 218
Cdd:pfam02463 709 KEELKKLKLEAEELLADRVQEAQDKINEELKLlkQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKlkv 788
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 219 EADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQ 298
Cdd:pfam02463 789 EEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL 868
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 299 IQTAKTQELNMLREqtsELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAE 378
Cdd:pfam02463 869 LQELLLKEEELEEQ---KLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEA 945
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569008864 379 KRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELEN 454
Cdd:pfam02463 946 DEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKE 1021
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
169-586 |
1.03e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 169 QAETSRLQEELAKLSEKLKKKQESFcrlqTEKETLFNDSRNKIEELQQRKEaDLKAQLartQKLQQELEAANQSLAELRD 248
Cdd:TIGR04523 217 ESQISELKKQNNQLKDNIEKKQQEI----NEKTTEISNTQTQLNQLKDEQN-KIKKQL---SEKQKELEQNNKKIKELEK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 249 QRQgerlEHAAALRALQDQ--------VSSQSADAQEQVEGL---LAEN----SALRTSLAALEQIQTAKTQELNMLREQ 313
Cdd:TIGR04523 289 QLN----QLKSEISDLNNQkeqdwnkeLKSELKNQEKKLEEIqnqISQNnkiiSQLNEQISQLKKELTNSESENSEKQRE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 314 TSELASELQHRQAEYEE-------LMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE 386
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSykqeiknLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKD 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 387 LAMETLQEKSQHKeELGAVRLRHEKELlgvrARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 466
Cdd:TIGR04523 445 LTNQDSVKELIIK-NLDNTRESLETQL----KVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKI 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 467 HSMdgakgwferrlkeaeeslqqqqQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQ--EERDGHVKTISNLKQEV 544
Cdd:TIGR04523 520 SSL----------------------KEKIEKLESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQ 577
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 569008864 545 KDTVDGQRILE---KKGSAVLKDLKRQLHLERKRADKLQERLQEI 586
Cdd:TIGR04523 578 KSLKKKQEEKQeliDQKEKEKKDLIKEIEEKEKKISSLEKELEKA 622
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
167-371 |
1.14e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 167 SKQAETSR----LQEELAKLSEKLKKKQESFCRLQTEKETL-----FNDSRNKIEELQQRK---EADLKAQLARTQKLQQ 234
Cdd:COG3206 168 LRREEARKalefLEEQLPELRKELEEAEAALEEFRQKNGLVdlseeAKLLLQQLSELESQLaeaRAELAEAEARLAALRA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 235 ELEAANQSLAEL-RDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAA-LEQIQTAKTQELNMLRE 312
Cdd:COG3206 248 QLGSGPDALPELlQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQeAQRILASLEAELEALQA 327
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008864 313 QTSELASELQHRQAEYEELMGQKDDLNsQLQESLRANSR----LLEQLQEIGQEKEQLTQDLQ 371
Cdd:COG3206 328 REASLQAQLAQLEARLAELPELEAELR-RLEREVEVARElyesLLQRLEEARLAEALTVGNVR 389
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
211-474 |
1.39e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 211 IEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRdqrqgERLEHAAALRalqdqvsSQSADAQEQVEGLLAENSALR 290
Cdd:PRK03918 191 IEELIKEKEKELEEVLREINEISSELPELREELEKLE-----KEVKELEELK-------EEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 291 TSLAALEQIQTAKTQELNMLREQTSELaSELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDL 370
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 371 QEARKSAEKRKVMLDELamETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTR 450
Cdd:PRK03918 338 ERLEELKKKLKELEKRL--EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIG 415
|
250 260
....*....|....*....|....
gi 569008864 451 ELENlqhTVEELQAQVHSMDGAKG 474
Cdd:PRK03918 416 ELKK---EIKELKKAIEELKKAKG 436
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
159-397 |
1.45e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 45.43 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 159 EQLQG----LESSKQAETSRLQ-----EELAKLSEKLKKKqesfcrLQTEKETLFNDSRN-KIEELQQRKEADLKAQLAR 228
Cdd:PRK10929 48 EALQSalnwLEERKGSLERAKQyqqviDNFPKLSAELRQQ------LNNERDEPRSVPPNmSTDALEQEILQVSSQLLEK 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 229 TQKLQQELEAANQ---SLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALE--QIQTAK 303
Cdd:PRK10929 122 SRQAQQEQDRAREisdSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKALVDELElaQLSANN 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 304 TQELNMLR-----EQTSELASELQ--------HRQAEYEE-------LMGQKDDLNSQLQESLRAN---SRLLEQ----L 356
Cdd:PRK10929 202 RQELARLRselakKRSQQLDAYLQalrnqlnsQRQREAERalestelLAEQSGDLPKSIVAQFKINrelSQALNQqaqrM 281
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 569008864 357 QEIGQEKEQLTQDLQEARKsaekrkvmldelAMETLQEKSQ 397
Cdd:PRK10929 282 DLIASQQRQAASQTLQVRQ------------ALNTLREQSQ 310
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
177-401 |
1.46e-04 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 45.10 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 177 EELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLE 256
Cdd:pfam03528 4 EDLQQRVAELEKENAEFYRLKQQLEAEFNQKRAKFKELYLAKEEDLKRQNAVLQEAQVELDALQNQLALARAEMENIKAV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 257 HAAALRALQDQVSSQSADAQEQVegllaensalrTSLAALEQiQTAKTQELNMLREQTSELASELQHRQAEYEElmgqKD 336
Cdd:pfam03528 84 ATVSENTKQEAIDEVKSQWQEEV-----------ASLQAIMK-ETVREYEVQFHRRLEQERAQWNQYRESAERE----IA 147
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008864 337 DLNSQLQEslransrlleqlqeiGQEKEQLTQDLQEARKSAEKRK--VMLDELAMETLQEKSQHKEE 401
Cdd:pfam03528 148 DLRRRLSE---------------GQEEENLEDEMKKAQEDAEKLRsvVMPMEKEIAALKAKLTEAED 199
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
141-469 |
1.57e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 141 AEVELKWEMEREEKKLLWEQLQG---------LESSKQAETSRLQ---------EELAKLSEKLKK------KQESFCRL 196
Cdd:pfam05483 168 AEKTKKYEYEREETRQVYMDLNNniekmilafEELRVQAENARLEmhfklkedhEKIQHLEEEYKKeindkeKQVSLLLI 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 197 Q-TEKET-------LFNDSRNKIEELQQR---KEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQ 265
Cdd:pfam05483 248 QiTEKENkmkdltfLLEESRDKANQLEEKtklQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTIC 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 266 DQVSSQSADAQEQVEGLLAEN---SALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQL 342
Cdd:pfam05483 328 QLTEEKEAQMEELNKAKAAHSfvvTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVEL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 343 QE---SLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET----------LQEKSQHKEELGAVRLR- 408
Cdd:pfam05483 408 EElkkILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLtaiktseehyLKEVEDLKTELEKEKLKn 487
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 569008864 409 -----HEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSM 469
Cdd:pfam05483 488 ieltaHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESV 553
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
141-603 |
2.23e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 141 AEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQE-------ELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEE 213
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREakrmyedKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 214 LQQ------RKEADLKAQLARTQKLQQELEAANQSLAELR---DQRQGERLEHAAALRAL----QDQVSSQSADAQ---- 276
Cdd:pfam15921 379 LQKlladlhKREKELSLEKEQNKRLWDRDTGNSITIDHLRrelDDRNMEVQRLEALLKAMksecQGQMERQMAAIQgkne 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 277 --EQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLL- 353
Cdd:pfam15921 459 slEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKn 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 354 --EQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL----------AMETLQEKSQHKEELGAVRLRHeKELLGVRARYE 421
Cdd:pfam15921 539 egDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtAGAMQVEKAQLEKEINDRRLEL-QEFKILKDKKD 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 422 RELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERR---LKEAEESLQQQQQEQEETL 498
Cdd:pfam15921 618 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKL 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 499 KLcreehaaELKGKDEELQNVREQLqQAQEERDGH-VKTISNLKQEV---KDTVDGQRILEKKGSAVLKDLKRQLHLERK 574
Cdd:pfam15921 698 KM-------QLKSAQSELEQTRNTL-KSMEGSDGHaMKVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANKEKHFLKE 769
|
490 500
....*....|....*....|....*....
gi 569008864 575 RADKLQERLQEILTNSKSRTGLEELVLSE 603
Cdd:pfam15921 770 EKNKLSQELSTVATEKNKMAGELEVLRSQ 798
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
172-412 |
2.48e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.83 E-value: 2.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 172 TSRLQEELAKLSEKLKKKQESFCRLQTEKetlfndsrnKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQ 251
Cdd:NF012221 1537 TSESSQQADAVSKHAKQDDAAQNALADKE---------RAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQ 1607
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 252 GERLEHAAalRALQDQVSS-----QSADAQEQVEGLLAENSALRTSLAALEQIQTaktqelnmlreqtsELASELQHRQA 326
Cdd:NF012221 1608 RDAILEES--RAVTKELTTlaqglDALDSQATYAGESGDQWRNPFAGGLLDRVQE--------------QLDDAKKISGK 1671
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 327 EYEELMGQKDDLNSQLQESLRANSRLLEQLQeigQEKEQLTQDLQEARKSAEKRKvmLDELAMETLQEKSQHKEELGA-- 404
Cdd:NF012221 1672 QLADAKQRHVDNQQKVKDAVAKSEAGVAQGE---QNQANAEQDIDDAKADAEKRK--DDALAKQNEAQQAESDANAAAnd 1746
|
....*...
gi 569008864 405 VRLRHEKE 412
Cdd:NF012221 1747 AQSRGEQD 1754
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
152-355 |
2.78e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 2.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 152 EEKKLLWEQLQGLESSKQAetsrLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRnkIEELQQRkEADLKAQLARtqk 231
Cdd:COG3206 212 EEAKLLLQQLSELESQLAE----ARAELAEAEARLAALRAQLGSGPDALPELLQSPV--IQQLRAQ-LAELEAELAE--- 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 232 LQQELEAANQSLAELRDQRqgerlehAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQiqtaKTQELNMLR 311
Cdd:COG3206 282 LSARYTPNHPDVIALRAQI-------AALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEA----RLAELPELE 350
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 569008864 312 EQTSELASELQHRQAEYEELMGQKDDLNSQLQESLrANSRLLEQ 355
Cdd:COG3206 351 AELRRLEREVEVARELYESLLQRLEEARLAEALTV-GNVRVIDP 393
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
148-378 |
3.10e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 148 EMEREEKKLLWEQLqGLESSKQAETSRLQEELAKLSEKLKKKQESFCR---LQTEKETLFNDSRNKIEELQQRKEADLKA 224
Cdd:pfam17380 357 ERKRELERIRQEEI-AMEISRMRELERLQMERQQKNERVRQELEAARKvkiLEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 225 QLARTQKlQQELEAANQSLAELRDQRQGERLEHAAALRALQ----DQVSSQSADAQEQVEGLLAENSALRTSlAALEQIQ 300
Cdd:pfam17380 436 EVRRLEE-ERAREMERVRLEEQERQQQVERLRQQEEERKRKklelEKEKRDRKRAEEQRRKILEKELEERKQ-AMIEEER 513
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 569008864 301 TAKTQELNMLREQTSeLASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAE 378
Cdd:pfam17380 514 KRKLLEKEMEERQKA-IYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
166-382 |
3.37e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 166 SSKQAETSRLQEELAKLSEKLKKKQESFcrlqteketlfndsrNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAE 245
Cdd:COG3883 19 QAKQKELSELQAELEAAQAELDALQAEL---------------EELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 246 LRDQRqGERLEHAAALRALQDQVSS--QSADAQEQVEGLLAENSALRTSLAALEQIQTAKtQELNMLREQTSELASELQH 323
Cdd:COG3883 84 RREEL-GERARALYRSGGSVSYLDVllGSESFSDFLDRLSALSKIADADADLLEELKADK-AELEAKKAELEAKLAELEA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 569008864 324 RQAEYEElmgQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKV 382
Cdd:COG3883 162 LKAELEA---AKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
201-397 |
3.37e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 201 ETLFNDSRNKIEELQQrKEADLKAQLArtqKLQQELEAANQSLAELRDQRQGERlEHAAALRALQDQVSSQSADAQEQVE 280
Cdd:COG3883 15 DPQIQAKQKELSELQA-ELEAAQAELD---ALQAELEELNEEYNELQAELEALQ-AEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 281 GLLAENSALRTSLAALEQIQTAKTQE--------LNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRL 352
Cdd:COG3883 90 ERARALYRSGGSVSYLDVLLGSESFSdfldrlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 569008864 353 LEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQ 397
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
174-481 |
3.44e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 174 RLQEELAKLSEKLKKKQESFCRLQTEKEtlfndsRNKIEELQQRKEAD-LKAQLArtqKLQQELEA----------ANQS 242
Cdd:COG3096 351 RYQEDLEELTERLEEQEEVVEEAAEQLA------EAEARLEAAEEEVDsLKSQLA---DYQQALDVqqtraiqyqqAVQA 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 243 LAELRDQRQGERL------EHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAktqelnMLREQTSE 316
Cdd:COG3096 422 LEKARALCGLPDLtpenaeDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGE------VERSQAWQ 495
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 317 LASELQHRQAEYEELMGQKDDLNSQLQESlranSRLLEQLQEIGQEKEQLTQDLQEARKSAEkrkvMLDELAME---TLQ 393
Cdd:COG3096 496 TARELLRRYRSQQALAQRLQQLRAQLAEL----EQRLRQQQNAERLLEEFCQRIGQQLDAAE----ELEELLAEleaQLE 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 394 EKSQHKEELGAVRLRHEKELLGVRARYER------ELRELHEDKKRQEEE--------------LRGQIREEKARTRELE 453
Cdd:COG3096 568 ELEEQAAEAVEQRSELRQQLEQLRARIKElaarapAWLAAQDALERLREQsgealadsqevtaaMQQLLEREREATVERD 647
|
330 340
....*....|....*....|....*...
gi 569008864 454 NLQHTVEELQAQVHSMDGAKGWFERRLK 481
Cdd:COG3096 648 ELAARKQALESQIERLSQPGGAEDPRLL 675
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
141-369 |
3.92e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.36 E-value: 3.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 141 AEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESF-----CRLQTEKETLFNDSRNKIEELQ 215
Cdd:PTZ00121 1560 AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkkaeeAKIKAEELKKAEEEKKKVEQLK 1639
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 216 QRKEADL-KAQLARTQKLQQELEAANQSLAELRDQRQGERL---EHAAALRALQDQVSSQSADAQEQVEGLLAENSALRT 291
Cdd:PTZ00121 1640 KKEAEEKkKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAkkaEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 569008864 292 SLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQD 369
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
344-586 |
4.42e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 4.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 344 ESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYErE 423
Cdd:TIGR02169 177 EELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELE-K 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 424 LRELHEDKKRQEEELRGQIREEKARTRELEN-----LQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETL 498
Cdd:TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDLGEeeqlrVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 499 klcreEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADK 578
Cdd:TIGR02169 336 -----AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
|
....*...
gi 569008864 579 LQERLQEI 586
Cdd:TIGR02169 411 LQEELQRL 418
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
166-298 |
5.36e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 43.03 E-value: 5.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 166 SSKQAETSRLQEELAKLSEKLKKKQESFCRLQtekETLfndsrnkieelqqrkeADLKAQLARTQKLQQELEAANQSLAE 245
Cdd:PRK09039 49 SGKDSALDRLNSQIAELADLLSLERQGNQDLQ---DSV----------------ANLRASLSAAEAERSRLQALLAELAG 109
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 569008864 246 LRDQRQGERLEHAAALRAlQDQVSSQsadAQEQVEGLLAENSALRTSLAALEQ 298
Cdd:PRK09039 110 AGAAAEGRAGELAQELDS-EKQVSAR---ALAQVELLNQQIAALRRQLAALEA 158
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
150-352 |
5.46e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 150 EREEKKLlwEQLQGLESSKQAETSRLQEELAKLSEKLKK-KQESFCRL-QTEKETLFNDSRNKIEELQQ----------- 216
Cdd:PRK11281 76 DRQKEET--EQLKQQLAQAPAKLRQAQAELEALKDDNDEeTRETLSTLsLRQLESRLAQTLDQLQNAQNdlaeynsqlvs 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 217 ------RKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRA--------------LQDQVSSQSADAQ 276
Cdd:PRK11281 154 lqtqpeRAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAqndlqrkslegntqLQDLLQKQRDYLT 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 277 EQVEGLLAENSALRTSL------AALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANS 350
Cdd:PRK11281 234 ARIQRLEHQLQLLQEAInskrltLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKN 313
|
..
gi 569008864 351 RL 352
Cdd:PRK11281 314 WL 315
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
138-360 |
7.32e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.42 E-value: 7.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 138 MPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRL---QEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEEL 214
Cdd:TIGR00618 655 LTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLtywKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDL 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 215 QQRKEADLKAQ-----LARTQKLQQELEAANQSLAELRDQRQGERLEHAAAlralqdQVSSQSADAQEQVEGLLAENSAL 289
Cdd:TIGR00618 735 AAREDALNQSLkelmhQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAA------EIQFFNRLREEDTHLLKTLEAEI 808
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008864 290 RTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIG 360
Cdd:TIGR00618 809 GQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLN 879
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
149-469 |
7.92e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 149 MEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLAR 228
Cdd:pfam12128 237 MKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 229 TQKLQQELEAANqslaelrdqrqgerlehAAALRALQDQVSSQSADaQEQVEGLLAENSALRTSLAALEQIQTAKTQELN 308
Cdd:pfam12128 317 VAKDRSELEALE-----------------DQHGAFLDADIETAAAD-QEQLPSWQSELENLEERLKALTGKHQDVTAKYN 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 309 MLREQTSE-----LASELQHRQAEYEELMGQKDDLNSQLQESLRA-NSRLLEQLQEIGQEKEQLTQDLQEArksaekrKV 382
Cdd:pfam12128 379 RRRSKIKEqnnrdIAGIKDKLAKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGEL-------KL 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 383 MLDELAM--ETLQEKSQHKEELGAVRLRHEKEllgvRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVE 460
Cdd:pfam12128 452 RLNQATAtpELLLQLENFDERIERAREEQEAA----NAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELEL 527
|
....*....
gi 569008864 461 ELQAQVHSM 469
Cdd:pfam12128 528 QLFPQAGTL 536
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
308-598 |
9.92e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 9.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 308 NMLRE-QTSELASELQhrqAEYEELMGQKDDLnsqlqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE 386
Cdd:COG4913 216 YMLEEpDTFEAADALV---EHFDDLERAHEAL-----EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 387 LAMETLQEKSQhkeelgavRLRHEKELLGVRaryERELRELHEDKKRQEEELRGQIREEKarTRELENLQHTVEELQAQV 466
Cdd:COG4913 288 RRLELLEAELE--------ELRAELARLEAE---LERLEARLDALREELDELEAQIRGNG--GDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 467 hsmdgakgwfERRLKEaeeslqqqqqeqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKD 546
Cdd:COG4913 355 ----------EERERR-------------------RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 569008864 547 TVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEE 598
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
235-686 |
1.03e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 235 ELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEgllaENSALRTSLAALEQIQTAKTQELNMLREQT 314
Cdd:pfam05557 31 ELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAE----LNRLKKKYLEALNKKLNEKESQLADAREVI 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 315 SELASELQHRQaeyEELMGQKDDLNSQLQESLRANSRLlEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQE 394
Cdd:pfam05557 107 SCLKNELSELR---RQIQRAELELQSTNSELEELQERL-DLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFE-IQS 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 395 KSQHKEELGAVRLRhekelLGVRARYERELRELHEDKKRqeeelrgqireekartreLENLQHTVEELQAQVHSMdgakg 474
Cdd:pfam05557 182 QEQDSEIVKNSKSE-----LARIPELEKELERLREHNKH------------------LNENIENKLLLKEEVEDL----- 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 475 wfERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEEL-----QNVREQLQQAQEERDGHVKTISNLKQEVKDTVD 549
Cdd:pfam05557 234 --KRKLEREEKYREEAATLELEKEKLEQELQSWVKLAQDTGLnlrspEDLSRRIEQLQQREIVLKEENSSLTSSARQLEK 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 550 GQRILEKKGSAVLKDLKrQLHLERKRADKLQERLQ-EILTNSKSRTGLEELV----------------------LSEMNS 606
Cdd:pfam05557 312 ARRELEQELAQYLKKIE-DLNKKLKRHKALVRRLQrRVLLLTKERDGYRAILesydkeltmsnyspqllerieeAEDMTQ 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 607 PSRTQTGDSSSVSSFSYREILKEKESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVS 686
Cdd:pfam05557 391 KMQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEME 470
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
7-328 |
1.21e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 7 EEEFQRMQTQL-LELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQklcSQLEQLELENRQLKEGVPGAAGAHVD 85
Cdd:COG4717 169 EAELAELQEELeELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ---EELEELEEELEQLENELEAAALEERL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 86 GELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEGQGDPPGDVLPTPLAPMPLAEVELKWEMEREEKKLLWEQLQGLE 165
Cdd:COG4717 246 KEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 166 SSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETL-FNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLA 244
Cdd:COG4717 326 AALGLPPDLSPEELLELLDRIEELQELLREAEELEEELqLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 245 ELRDQRQGERLEHAAALRALQ-DQVSSQSADAQEQVEGLLAENSALRTSLAALEQI--QTAKTQELNMLREQTSELASEL 321
Cdd:COG4717 406 ELEEQLEELLGELEELLEALDeEELEEELEELEEELEELEEELEELREELAELEAEleQLEEDGELAELLQELEELKAEL 485
|
....*..
gi 569008864 322 QHRQAEY 328
Cdd:COG4717 486 RELAEEW 492
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
23-481 |
1.24e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 23 NNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQK----LCSQLEQLELENRQLKEGVPGAAGAH-VDGELLRLQAENTA 97
Cdd:TIGR00606 571 NKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQnknhINNELESKEEQLSSYEDKLFDVCGSQdEESDLERLKEEIEK 650
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 98 LQKNMAALQeryGKEAVRPSAVGEGQGDPPG-------------------DVLPTPLAPMPLAEVELKWEMEREEKKLlw 158
Cdd:TIGR00606 651 SSKQRAMLA---GATAVYSQFITQLTDENQSccpvcqrvfqteaelqefiSDLQSKLRLAPDKLKSTESELKKKEKRR-- 725
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 159 EQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQT---EKETLFNDSRNKIEELQqrkeaDLKAQLARTQKLQQE 235
Cdd:TIGR00606 726 DEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNdieEQETLLGTIMPEEESAK-----VCLTDVTIMERFQME 800
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 236 LEAANQSLAELRDQRQGERLEHAAAlralqdQVSSQSADAQEQVEGLLAENSALRT-SLAALEQIQT--AKTQELNMLRE 312
Cdd:TIGR00606 801 LKDVERKIAQQAAKLQGSDLDRTVQ------QVNQEKQEKQHELDTVVSKIELNRKlIQDQQEQIQHlkSKTNELKSEKL 874
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 313 QTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAE------KRKVMLDE 386
Cdd:TIGR00606 875 QIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQdkvndiKEKVKNIH 954
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 387 LAMETLQEKSQHKEElgAVRLRHEKELLGV----------RARYERELRELHED---KKRQEEELRGQ----IREEKART 449
Cdd:TIGR00606 955 GYMKDIENKIQDGKD--DYLKQKETELNTVnaqleecekhQEKINEDMRLMRQDidtQKIQERWLQDNltlrKRENELKE 1032
|
490 500 510
....*....|....*....|....*....|..
gi 569008864 450 RELENLQHTVEELQAQVHSMDGAKGWFERRLK 481
Cdd:TIGR00606 1033 VEEELKQHLKEMGQMQVLQMKQEHQKLEENID 1064
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
200-568 |
1.29e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 200 KETLFNDSRNKIEELQQR------------------KEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAAL 261
Cdd:pfam15921 161 KEDMLEDSNTQIEQLRKMmlshegvlqeirsilvdfEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 262 RALQDQVSSQSADAQEQVEGLLAENSalrtslAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQ 341
Cdd:pfam15921 241 FPVEDQLEALKSESQNKIELLLQQHQ------DRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSM 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 342 LQESLRANSRLLEQLQEIGQEKEQLTQDLQEarkSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARyE 421
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYEDKIE---ELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKR-E 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 422 RELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG-AKGWFERRLKEAEESLQQQQQEQEETlkl 500
Cdd:pfam15921 391 KELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSeCQGQMERQMAAIQGKNESLEKVSSLT--- 467
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008864 501 creehaAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTvdgQRILEKKGSAVLK-----DLKRQ 568
Cdd:pfam15921 468 ------AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK---ERAIEATNAEITKlrsrvDLKLQ 531
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
140-296 |
1.60e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 140 LAEVELKWEMEREEKKLLWE--QLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQR 217
Cdd:COG3096 521 LAELEQRLRQQQNAERLLEEfcQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569008864 218 KEADLKAQlARTQKLQQELEAANQSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAAL 296
Cdd:COG3096 601 APAWLAAQ-DALERLREQSGEALADSQEVTAAMQ-QLLEREREATVERDELAARKQALESQIERLSQPGGAEDPRLLAL 677
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
177-479 |
1.71e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 41.59 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 177 EELAKLSEKLKKKQESFCRLQTEKETLFNDSRNkIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLE 256
Cdd:pfam19220 41 RELPQAKSRLLELEALLAQERAAYGKLRRELAG-LTRRLSAAEGELEELVARLAKLEAALREAEAAKEELR-IELRDKTA 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 257 HAAALRAlqdqvssQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKD 336
Cdd:pfam19220 119 QAEALER-------QLAAETEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 337 DLNSQLQEslraNSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvmldELAMETLQ-EKSQHKEELGAVRLRH---EKE 412
Cdd:pfam19220 192 ELTRRLAE----LETQLDATRARLRALEGQLAAEQAERERAEAQL----EEAVEAHRaERASLRMKLEALTARAaatEQL 263
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008864 413 LLGVRARyereLRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERR 479
Cdd:pfam19220 264 LAEARNQ----LRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEMQRARAELEER 326
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
175-365 |
1.95e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 175 LQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQqrkeadlkaqlARTQKLQQELEAANQSLAELRDQRQGER 254
Cdd:pfam15921 651 IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEME-----------TTTNKLKMQLKSAQSELEQTRNTLKSME 719
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 255 LEHAAALRAlqdqvssqSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQ 334
Cdd:pfam15921 720 GSDGHAMKV--------AMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGE 791
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 569008864 335 KDDLNSQ----------LQESLRANSRLLEQLQEIGQEKEQ 365
Cdd:pfam15921 792 LEVLRSQerrlkekvanMEVALDKASLQFAECQDIIQRQEQ 832
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
176-376 |
2.38e-03 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 41.51 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 176 QEELAKLSEKLKKKQESFCRlQTEKETLFNDSRNKIEELQQRKE---ADLKAQLARTQKLQQE--LEAANQSLAELrdQR 250
Cdd:pfam13779 508 DEEIAKLMQELREALDDYMQ-ALAEQAQQNPQDLQQPDDPNAQEmtqQDLQRMLDRIEELARSgrRAEAQQMLSQL--QQ 584
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 251 QGERLEhAAALRALQDQVSSQSADAQEQVEGLLAENSAL-----RTSLAALEQIQTAKTQELNMLREQTSELASELQHRQ 325
Cdd:pfam13779 585 MLENLQ-AGQPQQQQQQGQSEMQQAMDELGDLLREQQQLldetfRQLQQQGGQQQGQPGQQGQQGQGQQPGQGGQQPGAQ 663
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 569008864 326 AEYEELMGQKDDLNSQlQESLRanSRLLEQLQEIGQEK-EQLTQDLQEARKS 376
Cdd:pfam13779 664 MPPQGGAEALGDLAER-QQALR--RRLEELQDELKELGgKEPGQALGDAGRA 712
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
199-481 |
2.50e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.04 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 199 EKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlehaaALRALQDQVSSQSADAQEQ 278
Cdd:COG4372 10 KARLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELE--------QLEEELEQARSELEQLEEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 279 VEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQE 358
Cdd:COG4372 82 LEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLES 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 359 IGQEKEQLTQDLQ-----EARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKR 433
Cdd:COG4372 162 LQEELAALEQELQalseaEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDA 241
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 569008864 434 QEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLK 481
Cdd:COG4372 242 LELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALE 289
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
140-602 |
3.12e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.11 E-value: 3.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 140 LAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKE 219
Cdd:pfam02463 376 LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEK 455
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 220 ADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADA-----QEQVEGLLAENSALRTSLA 294
Cdd:pfam02463 456 QELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVllaliKDGVGGRIISAHGRLGDLG 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 295 -ALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEA 373
Cdd:pfam02463 536 vAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 374 RkSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREE-------- 445
Cdd:pfam02463 616 D-EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAEselakeei 694
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 446 KARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQ 525
Cdd:pfam02463 695 LRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 569008864 526 AQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLS 602
Cdd:pfam02463 775 ELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 851
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
182-276 |
3.29e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 40.86 E-value: 3.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 182 LSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQ------QRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQ---- 251
Cdd:PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQasvhqlDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMiaev 423
|
90 100 110
....*....|....*....|....*....|
gi 569008864 252 GERLEHAAALRALQDQVSS-----QSADAQ 276
Cdd:PRK06975 424 EQMLSSASQQLQLTGNVQLalialQNADAR 453
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
207-386 |
3.30e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.09 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 207 SRNKIEELQQRKEADLKAQLARTQKLQQEL------------EAANQSLAELRDQRQGERLEHAAA---LRALQDQVSSQ 271
Cdd:PRK11448 51 ALLGIYEPPCENQHDLLRRLGKEGFLPDEIldvfhklrkignKAVHEFHGDHREALMGLKLAFRLAvwfHRTYGKDWDFK 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 272 SADAQEQVEgllaensalrtSLAALEQIQtaktQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSR 351
Cdd:PRK11448 131 PGPFVPPED-----------PENLLHALQ----QEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQE 195
|
170 180 190
....*....|....*....|....*....|....*...
gi 569008864 352 LLEQLQEIGQEKEQLTQDLQEARKSAEKR---KVMLDE 386
Cdd:PRK11448 196 LEAQLEQLQEKAAETSQERKQKRKEITDQaakRLELSE 233
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
233-370 |
3.60e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.33 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 233 QQELEAANQSLAELRDQRQGERlehaaalralqdqvsSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLRE 312
Cdd:PRK09039 52 DSALDRLNSQIAELADLLSLER---------------QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 569008864 313 QTSELASELQHRQAEYEELMGQKDDLNSQ---LQESLRANSRLLEQLQEIGQEKEQLTQDL 370
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQiaaLRRQLAALEAALDASEKRDRESQAKIADL 177
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
152-417 |
4.04e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 40.71 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 152 EEKKLLWEQLQGLESSKQAET--SRLQEELAKLS-EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLAR 228
Cdd:COG5185 233 EALKGFQDPESELEDLAQTSDklEKLVEQNTDLRlEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 229 TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENsALRTSLAALEQIQT------- 301
Cdd:COG5185 313 SLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEV-ELSKSSEELDSFKDtiestke 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 302 ----AKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSA 377
Cdd:COG5185 392 sldeIPQNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDE 471
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 569008864 378 EKR--KVMLDELAMETLQEKSQ---HKEELGAVRLRHEKELLGVR 417
Cdd:COG5185 472 INRsvRSKKEDLNEELTQIESRvstLKATLEKLRAKLERQLEGVR 516
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
154-280 |
4.25e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.00 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 154 KKLLWEQLQGLESSKQaetsRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKEADLKAQLARTQKLQ 233
Cdd:smart00787 146 KEGLDENLEGLKEDYK----LLMKELELLNSIKPKLRDRKDALEEELRQL----KQLEDELEDCDPTELDRAKEKLKKLL 217
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 569008864 234 QELEAANQSLAELRDQRQgERLEHAAALRALQDQVSSQSADAQEQVE 280
Cdd:smart00787 218 QEIMIKVKKLEELEEELQ-ELESKIEDLTNKKSELNTEIAEAEKKLE 263
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
58-402 |
4.51e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 58 LCSQLEQLELENRQLKEgvpgaAGAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEgqgdppgdVLPTPLAP 137
Cdd:TIGR00618 526 LTRRMQRGEQTYAQLET-----SEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKE--------DIPNLQNI 592
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 138 MPLAEVELKWEMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQT-----EKETLFNDSRNKIE 212
Cdd:TIGR00618 593 TVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLtltqeRVREHALSIRVLPK 672
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 213 ELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQrqgerLEHAAALRALQDQVSSQSADAQEQVEGllaENSALRTS 292
Cdd:TIGR00618 673 ELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLREL-----ETHIEEYDREFNEIENASSSLGSDLAA---REDALNQS 744
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 293 LAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQ--------LQEIGQEKE 364
Cdd:TIGR00618 745 LKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEigqeipsdEDILNLQCE 824
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 569008864 365 QLTQDLQEARKSAEKRKVMLDELAMETLQ--EKSQHKEEL 402
Cdd:TIGR00618 825 TLVQEEEQFLSRLEEKSATLGEITHQLLKyeECSKQLAQL 864
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
265-456 |
4.94e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 265 QDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQE 344
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 345 SLRANSRL---------------LEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDelamETLQEKSQHKEELGAVRlrh 409
Cdd:COG3883 98 SGGSVSYLdvllgsesfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELE----AKLAELEALKAELEAAK--- 170
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 569008864 410 eKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQ 456
Cdd:COG3883 171 -AELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAA 216
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
144-453 |
5.19e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.49 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 144 ELKWEMEREEKkllweqLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEketlfnDSRNKIEELQQRKEADLK 223
Cdd:pfam17380 307 EKAREVERRRK------LEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQE------ERKRELERIRQEEIAMEI 374
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 224 AQLARTQKLQQELEAANqslaelrdQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSlaALEQIQTAK 303
Cdd:pfam17380 375 SRMRELERLQMERQQKN--------ERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR--EVRRLEEER 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 304 TQELNMLREqtselasELQHRQAEYEELMGQKDDLNSQLQESLRANsrllEQLQEIGQEKEQLTQDLQEARKSA---EKR 380
Cdd:pfam17380 445 AREMERVRL-------EEQERQQQVERLRQQEEERKRKKLELEKEK----RDRKRAEEQRRKILEKELEERKQAmieEER 513
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 569008864 381 KVMLDELAMETLQEK-SQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKR-----QEEELRGQIREEKARTRELE 453
Cdd:pfam17380 514 KRKLLEKEMEERQKAiYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRleameREREMMRQIVESEKARAEYE 592
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
160-474 |
5.64e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 5.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 160 QLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFND--SRNKIEELQQRKEADLKAQLAR------TQK 231
Cdd:pfam01576 237 QLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESEraARNKAEKQRRDLGEELEALKTEledtldTTA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 232 LQQELEAA-NQSLAELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNML 310
Cdd:pfam01576 317 AQQELRSKrEQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 311 reQTSELASELQHRQAEyeelmGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--- 387
Cdd:pfam01576 397 --QQAKQDSEHKRKKLE-----GQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLesq 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 388 ---AMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELR--------------ELHEDKKRQEEELRGQIREEKAR-- 448
Cdd:pfam01576 470 lqdTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEakrnverqlstlqaQLSDMKKKLEEDAGTLEALEEGKkr 549
|
330 340
....*....|....*....|....*..
gi 569008864 449 -TRELENLQHTVEELQAQVHSMDGAKG 474
Cdd:pfam01576 550 lQRELEALTQQLEEKAAAYDKLEKTKN 576
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
148-437 |
5.91e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 5.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 148 EMEREEKKLLWEQLQGLESSKQAETSRLQEELAKLSEKlkkkqesfcrlQTEKETLFNDSRNKIEELQQRKEADLKAQLA 227
Cdd:pfam07888 58 EKEKERYKRDREQWERQRRELESRVAELKEELRQSREK-----------HEELEEKYKELSASSEELSEEKDALLAQRAA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 228 RTQKLQqELEAANQSLA------ELRDQRQGERLEHAAALRALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQT 301
Cdd:pfam07888 127 HEARIR-ELEEDIKTLTqrvlerETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRD 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 302 AKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRK 381
Cdd:pfam07888 206 TQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQLT 285
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 569008864 382 VMLDELAMETLQEKSQHKEELGAVRLRHEKEllgvRARYERELRELHEDKKRQEEE 437
Cdd:pfam07888 286 LQLADASLALREGRARWAQERETLQQSAEAD----KDRIEKLSAELQRLEERLQEE 337
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1-260 |
6.01e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 6.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 1 MAQALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKLCSQLEQlelenrQLKEgvpgaa 80
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ------ELAA------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 81 gahVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEgqgDPPGDVLptpLAPMPLAEVELKWEMEREEKKLLWEQ 160
Cdd:COG4942 81 ---LEAELAELEKEIAELRAELEAQKEELAELLRALYRLGR---QPPLALL---LSPEDFLDAVRRLQYLKYLAPARREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 161 LQGLesskQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAAN 240
Cdd:COG4942 152 AEEL----RADLAELAALRAELEAERAELEALLAELEEERAAL-EALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250 260
....*....|....*....|
gi 569008864 241 QSLAELRDQRQGERLEHAAA 260
Cdd:COG4942 227 ALIARLEAEAAAAAERTPAA 246
|
|
| OmpH |
pfam03938 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
153-245 |
6.56e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 461098 [Multi-domain] Cd Length: 140 Bit Score: 37.94 E-value: 6.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 153 EKKLLWEQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADL-KAQLARTQK 231
Cdd:pfam03938 16 EGKAAQAQLEKKFKKRQAELEAKQKELQKLYEELQKDGALLEEEREEKEQELQKKEQELQQLQQKAQQELqKKQQELLQP 95
|
90
....*....|....
gi 569008864 232 LQQELEAANQSLAE 245
Cdd:pfam03938 96 IQDKINKAIKEVAK 109
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
262-530 |
7.05e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 7.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 262 RALQDQVSSQSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELASElQHRQAEYEELMGQKDDLNSQ 341
Cdd:pfam17380 287 RQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAME-RERELERIRQEERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 342 LQESLR---ANSRLLEQLQ-EIGQEKEQLTQDLQEARK-----SAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 412
Cdd:pfam17380 366 RQEEIAmeiSRMRELERLQmERQQKNERVRQELEAARKvkileEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 413 LLGVRARYERELRELHEDKKRQEEELR----GQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQ 488
Cdd:pfam17380 446 REMERVRLEEQERQQQVERLRQQEEERkrkkLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEER 525
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 569008864 489 QQQQEQEETLKLCREEHAAELKGkdEELQNVREQLQQAQEER 530
Cdd:pfam17380 526 QKAIYEEERRREAEEERRKQQEM--EERRRIQEQMRKATEER 565
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
204-359 |
8.75e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.46 E-value: 8.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 204 FNDSRNKIEELQQRKEADLKAQLARTQKLQ-QELEAAnqsLAELRDQRQGERLEHAAALRALQDQVSSQS----ADAQEQ 278
Cdd:COG2433 345 YDAYKNKFERVEKKVPPDVDRDEVKARVIRgLSIEEA---LEELIEKELPEEEPEAEREKEHEERELTEEeeeiRRLEEQ 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 279 VEGLLAENSALRTSLAALEQIQTAKTQELNMLREQTSELA---SELQHRQAEYEELmgqKDDLNsQLQESLRANSRLLEQ 355
Cdd:COG2433 422 VERLEAEVEELEAELEEKDERIERLERELSEARSEERREIrkdREISRLDREIERL---ERELE-EERERIEELKRKLER 497
|
....
gi 569008864 356 LQEI 359
Cdd:COG2433 498 LKEL 501
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
159-377 |
8.83e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 159 EQLQGLESSKQAETSRLQEELAKLSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRkEADLKAQLARTQKLQQELEA 238
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKL----QAEIAEAEAE-IEERREELGERARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 569008864 239 ANQSLAELRDQRQ-GERLEHAAALRALQDQVSS---QSADAQEQVEGLLAENSALRTSLAALEQIQTAKTQELNMLREQT 314
Cdd:COG3883 101 SVSYLDVLLGSESfSDFLDRLSALSKIADADADlleELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 569008864 315 SELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSA 377
Cdd:COG3883 181 EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 243
|
|
| |
