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Conserved domains on  [gi|568990480|ref|XP_006520141|]
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sperm-associated antigen 1 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 545-636 4.52e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


:

Pssm-ID: 464012  Cd Length: 91  Bit Score: 90.80  E-value: 4.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  545 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 623
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 568990480  624 FKTMLTLINKGQK 636
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
3-105 6.96e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 6.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   3 YTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:COG4785   96 FDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175

                         90       100
                 ....*....|....*....|....
gi 568990480  82 LAKKTLSEVERDLKNSEPVSELQT 105
Cdd:COG4785  176 ERALWLYLAERKLDPEKALALLLE 199
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 200-437 9.50e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 71.17  E-value: 9.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  200 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsanadelSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 279
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  280 AMAYETLEQYRNAYVDYkTVLQIDCGIQLASdSANRIARILTELDGSKWRERLPPIPA-VPTSEPLRVWLPAAETpdqDP 358
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEnLPSVTFVGNYLQSFRP---KP 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  359 CPNNCMPSI-TDEKMFQALKEEGNQLVKDK---NYKDAISKYNECL---KINSKACAIYTNRALCYLKLGQFEEAKLDCE 431
Cdd:TIGR00990 276 RPAGLEDSNeLDEETGNGQLQLGLKSPESKadeSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355


                  ....*.
gi 568990480  432 QALQID 437
Cdd:TIGR00990 356 KSIELD 361
PLN03088 super family cl33632
SGT1, suppressor of G2 allele of SKP1; Provisional
 386-562 3.84e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


The actual alignment was detected with superfamily member PLN03088:

Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.32  E-value: 3.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 386 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 465
Cdd:PLN03088  15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 466 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 545
Cdd:PLN03088  85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                        170       180
                 ....*....|....*....|.
gi 568990480 546 TNAYEFGQ----VLSTISARK 562
Cdd:PLN03088 156 KYRHEFYQkpeeVVVTVFAKG 176
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 545-636 4.52e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 90.80  E-value: 4.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  545 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 623
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 568990480  624 FKTMLTLINKGQK 636
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
3-105 6.96e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 6.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   3 YTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:COG4785   96 FDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175

                         90       100
                 ....*....|....*....|....
gi 568990480  82 LAKKTLSEVERDLKNSEPVSELQT 105
Cdd:COG4785  176 ERALWLYLAERKLDPEKALALLLE 199
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 200-437 9.50e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 71.17  E-value: 9.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  200 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsanadelSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 279
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  280 AMAYETLEQYRNAYVDYkTVLQIDCGIQLASdSANRIARILTELDGSKWRERLPPIPA-VPTSEPLRVWLPAAETpdqDP 358
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEnLPSVTFVGNYLQSFRP---KP 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  359 CPNNCMPSI-TDEKMFQALKEEGNQLVKDK---NYKDAISKYNECL---KINSKACAIYTNRALCYLKLGQFEEAKLDCE 431
Cdd:TIGR00990 276 RPAGLEDSNeLDEETGNGQLQLGLKSPESKadeSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355


                  ....*.
gi 568990480  432 QALQID 437
Cdd:TIGR00990 356 KSIELD 361
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
242-459 5.98e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.18  E-value: 5.98e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 242 YSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilt 321
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD------------------ 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 322 eldgskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLK 401
Cdd:COG0457   73 --------------------------------------PDD----------AEALNNLGLALQALGRYEEALEDYDKALE 104

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480 402 INSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 459
Cdd:COG0457  105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 198-358 9.61e-12

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 67.12  E-value: 9.61e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 198 SGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 277
Cdd:PLN03088   3 KDLEDKAKEAFVDDDFALAVDLYTQAID-LDPN---NAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 278 RRAMAYETLEQYRNAyvdyKTVLQIdcGIQLASDSAnRIARILTELDGSKWRERLPPIPAVPTSEPLRVWLPAAETPDQD 357
Cdd:PLN03088  75 RKGTACMKLEEYQTA----KAALEK--GASLAPGDS-RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                 .
gi 568990480 358 P 358
Cdd:PLN03088 148 P 148
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 3-106 4.68e-07

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 52.48  E-value: 4.68e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   3 YTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:PLN03088  25 YTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104

                         90       100
                 ....*....|....*....|....*
gi 568990480  82 LAKKTLSEVerDLKNSEPVSELQTK 106
Cdd:PLN03088 105 RFTKLIKEC--DEKIAEEEKDLVQP 127
TPR_1 pfam00515
Tetratricopeptide repeat;
13-46 2.36e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 2.36e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 568990480   13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 46
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
409-440 2.43e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 2.43e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 568990480  409 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 409-440 7.30e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 7.30e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568990480   409 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 13-46 7.97e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 7.97e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568990480    13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 46
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 386-562 3.84e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.32  E-value: 3.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 386 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 465
Cdd:PLN03088  15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 466 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 545
Cdd:PLN03088  85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                        170       180
                 ....*....|....*....|.
gi 568990480 546 TNAYEFGQ----VLSTISARK 562
Cdd:PLN03088 156 KYRHEFYQkpeeVVVTVFAKG 176
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
400-476 2.55e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 2.55e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480 400 LKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVDPSQVL-LSPDSSEA 476
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALeLDPDDAEA 78
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-327 2.75e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 2.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   9 ALPTAIAYNNRAQAEIKLQ--RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKT 86
Cdd:COG2956    2 LLPVAAALGWYFKGLNYLLngQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  87 LSEVERDLKNSEPVSELqtkgkrmvIEEVensgdeggkgsADEREDGGSDEAAMGNI---QKKLmvrrseggrrsrrgrt 163
Cdd:COG2956   82 LAQDYLKAGLLDRAEEL--------LEKL-----------LELDPDDAEALRLLAEIyeqEGDW---------------- 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 164 pgPRAEQQggLRETATASTGDSHYpeepraadnpsgLKRRGNELFRGGQFAEAAAQYSVAIAqleptgsANADELSILYs 243
Cdd:COG2956  127 --EKAIEV--LERLLKLGPENAHA------------YCELAELYLEQGDYDEAIEALEKALK-------LDPDCARALL- 182

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 244 NRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCGiqlaSDSANRIARILTEL 323
Cdd:COG2956  183 LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS----DDLLLALADLLERK 258


                 ....
gi 568990480 324 DGSK 327
Cdd:COG2956  259 EGLE 262
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 20-84 3.09e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.39  E-value: 3.09e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568990480  20 AQAEIKLQR--WSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAK 84
Cdd:cd24142    5 EKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-96 1.15e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 1.15e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480   19 RAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKN 96
Cdd:TIGR02917 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 545-636 4.52e-22

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 90.80  E-value: 4.52e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  545 PTNAYEFGQVLSTIsaRKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAK-DPSLVYEHLLYLSKAER 623
Cdd:pfam13877   1 PRNAYEFERDWRRL--RKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENeDPALVLEILQGLSKVPR 78

                          90
                  ....*....|...
gi 568990480  624 FKTMLTLINKGQK 636
Cdd:pfam13877  79 FDLAVMFLSKAEK 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
3-105 6.96e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 68.40  E-value: 6.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   3 YTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:COG4785   96 FDQALELDPDlAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP 175

                         90       100
                 ....*....|....*....|....
gi 568990480  82 LAKKTLSEVERDLKNSEPVSELQT 105
Cdd:COG4785  176 ERALWLYLAERKLDPEKALALLLE 199
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 200-437 9.50e-13

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 71.17  E-value: 9.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  200 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsanadelSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 279
Cdd:TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAI-ECKPD--------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  280 AMAYETLEQYRNAYVDYkTVLQIDCGIQLASdSANRIARILTELDGSKWRERLPPIPA-VPTSEPLRVWLPAAETpdqDP 358
Cdd:TIGR00990 201 ANAYDGLGKYADALLDL-TASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPEnLPSVTFVGNYLQSFRP---KP 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  359 CPNNCMPSI-TDEKMFQALKEEGNQLVKDK---NYKDAISKYNECL---KINSKACAIYTNRALCYLKLGQFEEAKLDCE 431
Cdd:TIGR00990 276 RPAGLEDSNeLDEETGNGQLQLGLKSPESKadeSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355


                  ....*.
gi 568990480  432 QALQID 437
Cdd:TIGR00990 356 KSIELD 361
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-98 1.47e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 68.11  E-value: 1.47e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG0457   30 DYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD 109

                         90
                 ....*....|....*...
gi 568990480  81 DLAKKTLSEVERDLKNSE 98
Cdd:COG0457  110 AEALYNLGLALLELGRYD 127
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-98 2.41e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 67.34  E-value: 2.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG0457   64 DYEQALELDPDdAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD 143

                         90
                 ....*....|....*...
gi 568990480  81 DLAKKTLSEVERDLKNSE 98
Cdd:COG0457  144 ADALYNLGIALEKLGRYE 161
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
242-459 5.98e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 66.18  E-value: 5.98e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 242 YSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilt 321
Cdd:COG0457   11 YNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD------------------ 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 322 eldgskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLK 401
Cdd:COG0457   73 --------------------------------------PDD----------AEALNNLGLALQALGRYEEALEDYDKALE 104

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480 402 INSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 459
Cdd:COG0457  105 LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
13-98 7.41e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.80  E-value: 7.41e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:COG0457    8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87


                 ....*.
gi 568990480  93 DLKNSE 98
Cdd:COG0457   88 ALGRYE 93
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 198-358 9.61e-12

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 67.12  E-value: 9.61e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 198 SGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 277
Cdd:PLN03088   3 KDLEDKAKEAFVDDDFALAVDLYTQAID-LDPN---NAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 278 RRAMAYETLEQYRNAyvdyKTVLQIdcGIQLASDSAnRIARILTELDGSKWRERLPPIPAVPTSEPLRVWLPAAETPDQD 357
Cdd:PLN03088  75 RKGTACMKLEEYQTA----KAALEK--GASLAPGDS-RFTKLIKECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADAT 147


                 .
gi 568990480 358 P 358
Cdd:PLN03088 148 P 148
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
187-337 2.23e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 64.17  E-value: 2.23e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 187 YPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRAL 266
Cdd:COG4785   63 IDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE-LDP-------DLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568990480 267 ELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCgiqlaSDSANRIARILTE--LDGSKWRERLPPIPA 337
Cdd:COG4785  135 ELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP-----NDPERALWLYLAErkLDPEKALALLLEDWA 202
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
2-83 3.22e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 63.40  E-value: 3.22e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   2 YYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:COG4785   62 RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYA 141


                 ..
gi 568990480  82 LA 83
Cdd:COG4785  142 YA 143
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-80 5.17e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.78  E-value: 5.17e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG3914  100 LYRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDN 179
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-83 1.85e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.86  E-value: 1.85e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   2 YYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG3914  134 ALRRALALNPdFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDN 213


                 ...
gi 568990480  81 DLA 83
Cdd:COG3914  214 ADA 216
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
195-455 7.95e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.02  E-value: 7.95e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 195 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVK 274
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-LDP-------DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 275 PLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldgskwrerlppipavptseplrvwlpaaetp 354
Cdd:COG0457   78 ALNNLGLALQALGRYEEALEDYDKALELD--------------------------------------------------- 106

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 355 dqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQAL 434
Cdd:COG0457  107 -----PDD----------AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171

                        250       260
                 ....*....|....*....|.
gi 568990480 435 QIDGENVKASHRLALAQKGLE 455
Cdd:COG0457  172 AAALAALLAAALGEAALALAA 192
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
369-480 1.69e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.86  E-value: 1.69e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 369 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 448
Cdd:COG0457   38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117

                         90       100       110
                 ....*....|....*....|....*....|...
gi 568990480 449 LAQKGLENCRESGVDPSQVL-LSPDSSEAARHL 480
Cdd:COG0457  118 LALLELGRYDEAIEAYERALeLDPDDADALYNL 150
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 2-453 2.98e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.00  E-value: 2.98e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480    2 YYTRSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:TIGR00990 149 LYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   82 laKKTLSEVERDLKN---SEPVSELQTKGKRMviEEVENSGDEGGKGSADEREDGGSD------EAAMGNIQKKLMVRRS 152
Cdd:TIGR00990 229 --EQSAQAVERLLKKfaeSKAKEILETKPENL--PSVTFVGNYLQSFRPKPRPAGLEDsneldeETGNGQLQLGLKSPES 304

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  153 EGGRRSRRGRTPGPRAEQQGGLRETATAStgdshypeepraadnpsgLKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgs 232
Cdd:TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIA------------------LNLRGTFKCLKGKHLEALADLSKSI-ELDP--- 362

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  233 anadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCG-----IQ 307
Cdd:TIGR00990 363 ----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDfifshIQ 438

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  308 LASDS--ANRIARILTELdgSKWRERLPPIPAVPTseplrvwlpaaetpdqdpcpnncmpsitdekmFQAlkeegnQLVK 385
Cdd:TIGR00990 439 LGVTQykEGSIASSMATF--RRCKKNFPEAPDVYN--------------------------------YYG------ELLL 478

                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480  386 DKN-YKDAISKYNECLKINSKACAIYT------NRALCYLKLGQ-FEEAKLDCEQALQIDGENVKASHRLA--LAQKG 453
Cdd:TIGR00990 479 DQNkFDEAIEKFDTAIELEKETKPMYMnvlpliNKALALFQWKQdFIEAENLCEKALIIDPECDIAVATMAqlLLQQG 556
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 326-463 3.51e-09

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 60.00  E-value: 3.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  326 SKWRERLPPIPAVPTSEPlrvwlpAAETPDQDPCPNNCMPSITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSK 405
Cdd:TIGR00990  86 GKTEEKKSTAPKNAPVEP------ADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD 159

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480  406 AcAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVD 463
Cdd:TIGR00990 160 P-VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 13-80 6.03e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 6.03e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN 84
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 13-96 8.71e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 8.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83


                 ....
gi 568990480  93 DLKN 96
Cdd:COG4783   84 KAGD 87
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
369-480 1.08e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 1.08e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 369 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 448
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                         90       100       110
                 ....*....|....*....|....*....|...
gi 568990480 449 LAQKGLENCRESGVDPSQVL-LSPDSSEAARHL 480
Cdd:COG0457   84 LALQALGRYEEALEDYDKALeLDPDDAEALYNL 116
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
2-79 2.02e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.09  E-value: 2.02e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568990480   2 YYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEdCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPD 79
Cdd:COG3063   14 YYEKALELDPdNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 2-81 2.14e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 2.14e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   2 YYTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG4235   39 AYEKALRLDPdNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118


                 .
gi 568990480  81 D 81
Cdd:COG4235  119 A 119
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 13-98 2.69e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.27  E-value: 2.69e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:COG4783   38 PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117


                 ....*.
gi 568990480  93 DLKNSE 98
Cdd:COG4783  118 ALGRPD 123
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
2-83 2.80e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.01  E-value: 2.80e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG0457   98 DYDKALELDPDdAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177


                 ...
gi 568990480  81 DLA 83
Cdd:COG0457  178 LLA 180
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 13-96 3.12e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.93  E-value: 3.12e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:COG3914   78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157


                 ....
gi 568990480  93 DLKN 96
Cdd:COG3914  158 RLGR 161
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 13-98 3.70e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 55.12  E-value: 3.70e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:COG2956  144 AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYE 223


                 ....*.
gi 568990480  93 DLKNSE 98
Cdd:COG2956  224 KLGDPE 229
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
374-452 7.51e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.77  E-value: 7.51e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568990480 374 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQK 452
Cdd:COG4785  108 EAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAER 186
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 374-480 7.84e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 55.38  E-value: 7.84e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 374 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA--- 450
Cdd:COG3914   79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAlrr 158

                         90       100       110
                 ....*....|....*....|....*....|....
gi 568990480 451 ----QKGLENCRESgvdpsqVLLSPDSSEAARHL 480
Cdd:COG3914  159 lgrlEEAIAALRRA------LELDPDNAEALNNL 186
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 2-82 1.03e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 53.96  E-value: 1.03e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   2 YYTRSLSALPTAI-AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG2956  166 ALEKALKLDPDCArALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245


                 ..
gi 568990480  81 DL 82
Cdd:COG2956  246 DL 247
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
365-450 1.26e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.00  E-value: 1.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 365 PSITDEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKAS 444
Cdd:COG4785   65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAY 144


                 ....*.
gi 568990480 445 HRLALA 450
Cdd:COG4785  145 LNRGIA 150
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 2-80 1.52e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.96  E-value: 1.52e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:COG4783   60 LLHEALELDPDePEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 383-459 1.79e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 1.79e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568990480 383 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRE 459
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 167-452 2.00e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.23  E-value: 2.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 167 RAEQQGGLRETATASTGDSHYPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIA-QLEPTGSANADELSILYSNR 245
Cdd:COG3914    5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAaGEAAAAAAALLLLAALLELA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 246 AACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldg 325
Cdd:COG3914   85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---------------------- 142

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 326 skwrerlppipavptseplrvwlpaaetPDqdpcpnncmpsitdekMFQALKEEGNQLVKDKNYKDAISKYNECLKINSK 405
Cdd:COG3914  143 ----------------------------PD----------------FAEAYLNLGEALRRLGRLEEAIAALRRALELDPD 178

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 568990480 406 ACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKA-SHRLALAQK 452
Cdd:COG3914  179 NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAhSNLLFALRQ 226
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2-78 2.11e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 2.11e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480   2 YYTRSLSALPT-AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEP 78
Cdd:COG5010   76 LLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 198-456 3.56e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 3.56e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 198 SGLKRRGNELFRGGQFAEAAAQYsVAIAQLEPtgsANADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLL 277
Cdd:COG2956    9 LGWYFKGLNYLLNGQPDKAIDLL-EEALELDP---ETVE----AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 278 RRAMAYETLEQYRNAYVDYKTVLQIDcgiQLASDSANRIARILTELdgSKWRErlppipAVPTSEPLrvwlpAAETPDQD 357
Cdd:COG2956   81 ELAQDYLKAGLLDRAEELLEKLLELD---PDDAEALRLLAEIYEQE--GDWEK------AIEVLERL-----LKLGPENA 144

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 358 pcpnncmpsitdekmfQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 437
Cdd:COG2956  145 ----------------HAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208

                        250
                 ....*....|....*....
gi 568990480 438 GENVKASHRLALAQKGLEN 456
Cdd:COG2956  209 PDYLPALPRLAELYEKLGD 227
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 3-106 4.68e-07

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 52.48  E-value: 4.68e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   3 YTRSLSALP-TAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDND 81
Cdd:PLN03088  25 YTQAIDLDPnNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104

                         90       100
                 ....*....|....*....|....*
gi 568990480  82 LAKKTLSEVerDLKNSEPVSELQTK 106
Cdd:PLN03088 105 RFTKLIKEC--DEKIAEEEKDLVQP 127
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 369-454 9.82e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.92  E-value: 9.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 369 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLA 448
Cdd:COG3914  108 NPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187


                 ....*.
gi 568990480 449 LAQKGL 454
Cdd:COG3914  188 NALQDL 193
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
22-98 2.06e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.32  E-value: 2.06e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568990480  22 AEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVdDLRKVLQVEPDNDLAKKTLSEVERDLKNSE 98
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYD 76
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 195-303 2.08e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.31  E-value: 2.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 195 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIaQLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVK 274
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKAL-RLDPD---NAD----ALLDLAEALLAAGDTEEAEELLERALALDPDNPE 86

                         90       100
                 ....*....|....*....|....*....
gi 568990480 275 PLLRRAMAYETLEQYRNAYVDYKTVLQID 303
Cdd:COG4235   87 ALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 9-98 2.30e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.03  E-value: 2.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   9 ALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLS 88
Cdd:COG5010   50 LAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLA 129

                         90
                 ....*....|
gi 568990480  89 EVERDLKNSE 98
Cdd:COG5010  130 ALLLSLGQDD 139
TPR_1 pfam00515
Tetratricopeptide repeat;
13-46 2.36e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 2.36e-06
                          10        20        30
                  ....*....|....*....|....*....|....
gi 568990480   13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 46
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
409-440 2.43e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.33  E-value: 2.43e-06
                          10        20        30
                  ....*....|....*....|....*....|..
gi 568990480  409 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:pfam00515   3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 15-98 3.26e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 3.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  15 AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDL 94
Cdd:COG2956  112 ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ 191


                 ....
gi 568990480  95 KNSE 98
Cdd:COG2956  192 GDYE 195
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 374-459 4.32e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.72  E-value: 4.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 374 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKG 453
Cdd:COG4783   39 EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118


                 ....*.
gi 568990480 454 LENCRE 459
Cdd:COG4783  119 LGRPDE 124
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
383-450 6.77e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.78  E-value: 6.77e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480 383 LVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAkLDCEQALQIDGENVKASHRLALA 450
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAEL 68
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 409-440 7.30e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 7.30e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568990480   409 IYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 13-46 7.97e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.82  E-value: 7.97e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568990480    13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGN 46
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 374-450 1.52e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.18  E-value: 1.52e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568990480 374 QALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 450
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 15-98 1.59e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 1.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  15 AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDL 94
Cdd:COG2956   78 ALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQ 157


                 ....
gi 568990480  95 KNSE 98
Cdd:COG2956  158 GDYD 161
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 32-103 2.91e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 44.23  E-value: 2.91e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568990480  32 ALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSEL 103
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL 73
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 386-562 3.84e-05

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 46.32  E-value: 3.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 386 DKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLEncresgvdps 465
Cdd:PLN03088  15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE---------- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 466 qvllspdSSEAARHLDTKNDTAPPSKGRERRRIqvQEVDGSSDEEPERPAEASATSAPARDGVEDGGSAEPAEKLDVSKP 545
Cdd:PLN03088  85 -------EYQTAKAALEKGASLAPGDSRFTKLI--KECDEKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPPSKP 155

                        170       180
                 ....*....|....*....|.
gi 568990480 546 TNAYEFGQ----VLSTISARK 562
Cdd:PLN03088 156 KYRHEFYQkpeeVVVTVFAKG 176
TPR_12 pfam13424
Tetratricopeptide repeat;
12-76 9.48e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 41.22  E-value: 9.48e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568990480   12 TAIAYNNRAQAEIKLQRWSSALEDCEKALEL--------DPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQV 76
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 195-303 1.34e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.49  E-value: 1.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 195 DNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsaNADELSILYsNRAACYLKEGNCRDCIQDCNRALELHPFSVK 274
Cdd:COG4783   36 DNPEAFALLGEILLQLGDLDEAIVLLHEALEL-------DPDEPEARL-NLGLALLKAGDYDEALALLEKALKLDPEHPE 107

                         90       100
                 ....*....|....*....|....*....
gi 568990480 275 PLLRRAMAYETLEQYRNAYVDYKTVLQID 303
Cdd:COG4783  108 AYLRLARAYRALGRPDEAIAALEKALELD 136
TPR_1 pfam00515
Tetratricopeptide repeat;
47-80 1.34e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.33  E-value: 1.34e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 568990480   47 VKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
369-437 1.60e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 1.60e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568990480 369 DEKMFQALKEEGNQLVKDKNYKDAIsKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 437
Cdd:COG3063   22 DPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
TPR_17 pfam13431
Tetratricopeptide repeat;
36-67 1.64e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 39.06  E-value: 1.64e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 568990480   36 CEKALELDPGNVKALLRRATTYKHQNKLQEAV 67
Cdd:pfam13431   2 YLKALELDPNNADAYYNLAVLLLELGQSETAL 33
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 380-450 1.64e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.92  E-value: 1.64e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568990480 380 GNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 450
Cdd:COG4235   24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 192-455 1.74e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 1.74e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 192 RAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQleptgsaNADELSILYsNRAACYLKEGNCRDCIQDCNRALELHPF 271
Cdd:COG2956   71 RDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEL-------DPDDAEALR-LLAEIYEQEGDWEKAIEVLERLLKLGPE 142

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 272 SVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteldgskwrerlppipavptseplrvwlpaa 351
Cdd:COG2956  143 NAHAYCELAELYLEQGDYDEAIEALEKALKLD------------------------------------------------ 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 352 etpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCE 431
Cdd:COG2956  175 --------PDC----------ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR 236

                        250       260
                 ....*....|....*....|....*.
gi 568990480 432 QALQIDGEN--VKASHRLALAQKGLE 455
Cdd:COG2956  237 KALELDPSDdlLLALADLLERKEGLE 262
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 193-346 2.54e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.21  E-value: 2.54e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 193 AADNPSGLKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHP-- 270
Cdd:COG3914  142 NPDFAEAYLNLGEALRRLGRLEEAIAALRRAL-ELDP-------DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPdn 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 271 FSVKPLLRRAM-------AYETLEQYRNAYVDYKTVLQIDCGIQLASDSAN---RIARILTELDGSKWRERLPPIPAVP- 339
Cdd:COG3914  214 ADAHSNLLFALrqacdweVYDRFEELLAALARGPSELSPFALLYLPDDDPAellALARAWAQLVAAAAAPELPPPPNPRd 293


                 ....*..
gi 568990480 340 TSEPLRV 346
Cdd:COG3914  294 PDRKLRI 300
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
400-476 2.55e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 2.55e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480 400 LKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVDPSQVL-LSPDSSEA 476
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALeLDPDDAEA 78
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 9-327 2.75e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 2.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   9 ALPTAIAYNNRAQAEIKLQ--RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKT 86
Cdd:COG2956    2 LLPVAAALGWYFKGLNYLLngQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  87 LSEVERDLKNSEPVSELqtkgkrmvIEEVensgdeggkgsADEREDGGSDEAAMGNI---QKKLmvrrseggrrsrrgrt 163
Cdd:COG2956   82 LAQDYLKAGLLDRAEEL--------LEKL-----------LELDPDDAEALRLLAEIyeqEGDW---------------- 126

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 164 pgPRAEQQggLRETATASTGDSHYpeepraadnpsgLKRRGNELFRGGQFAEAAAQYSVAIAqleptgsANADELSILYs 243
Cdd:COG2956  127 --EKAIEV--LERLLKLGPENAHA------------YCELAELYLEQGDYDEAIEALEKALK-------LDPDCARALL- 182

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 244 NRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCGiqlaSDSANRIARILTEL 323
Cdd:COG2956  183 LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS----DDLLLALADLLERK 258


                 ....
gi 568990480 324 DGSK 327
Cdd:COG2956  259 EGLE 262
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 20-84 3.09e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.39  E-value: 3.09e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568990480  20 AQAEIKLQR--WSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAK 84
Cdd:cd24142    5 EKAEELLDQgnFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEK 71
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 206-319 3.27e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.75  E-value: 3.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 206 ELFRGGQFAEAAAQYSvAIAQLEPTGSANADelsILYsNRAACYLKEGNCRDCIQDCNRALELHPFSVK---PLLRRAMA 282
Cdd:COG1729    2 ALLKAGDYDEAIAAFK-AFLKRYPNSPLAPD---ALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLS 76

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 568990480 283 YETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARI 319
Cdd:COG1729   77 YLELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
40-332 3.56e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 42.69  E-value: 3.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  40 LELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNsepvselqtkgkrmvieevensg 119
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR----------------------- 57

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 120 deggkgsaderedggsDEAAMGNIQKKLMVrrseggrrsrrgrtpgpraeqqgglretatastgdshypeeprAADNPSG 199
Cdd:COG0457   58 ----------------YEEALADYEQALEL-------------------------------------------DPDDAEA 78

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 200 LKRRGNELFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRR 279
Cdd:COG0457   79 LNNLGLALQALGRYEEALEDYDKAL-ELDP-------DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568990480 280 AMAYETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARILTELDGSKWRERL 332
Cdd:COG0457  151 GIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 242-270 3.56e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.20  E-value: 3.56e-04
                           10        20
                   ....*....|....*....|....*....
gi 568990480   242 YSNRAACYLKEGNCRDCIQDCNRALELHP 270
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 13-45 3.80e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 38.27  E-value: 3.80e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 568990480   13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPG 45
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 47-80 5.38e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 5.38e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568990480    47 VKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
207-303 6.65e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 6.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 207 LFRGGQFAEAAAQYSVAIAqLEPtgsanadELSILYSNRAACYLKEGNCRDCIQdCNRALELHPFSVKPLLRRAMAYETL 286
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALE-LDP-------DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72

                         90
                 ....*....|....*..
gi 568990480 287 EQYRNAYVDYKTVLQID 303
Cdd:COG3063   73 GDYDEALAYLERALELD 89
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 15-92 8.70e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 8.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480  15 AYNNRAQAEIKLQRWSSALEDCEKALELDPGNVK---ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVE 91
Cdd:COG1729   32 ALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARLA 111


                 .
gi 568990480  92 R 92
Cdd:COG1729  112 R 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 207-303 9.50e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 9.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 207 LFRGGQFAEAAAQYSVAIaQLEPtgsanadELSILYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETL 286
Cdd:COG5010   64 YNKLGDFEESLALLEQAL-QLDP-------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135

                         90
                 ....*....|....*..
gi 568990480 287 EQYRNAYVDYKTVLQID 303
Cdd:COG5010  136 GQDDEAKAALQRALGTS 152
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-96 1.15e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.38  E-value: 1.15e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480   19 RAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKN 96
Cdd:TIGR02917 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGR 344
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 409-437 1.73e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 36.35  E-value: 1.73e-03
                          10        20
                  ....*....|....*....|....*....
gi 568990480  409 IYTNRALCYLKLGQFEEAKLDCEQALQID 437
Cdd:pfam07719   3 ALYNLGLAYYKLGDYEEALEAYEKALELD 31
TPR_8 pfam13181
Tetratricopeptide repeat;
409-437 1.78e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 36.22  E-value: 1.78e-03
                          10        20
                  ....*....|....*....|....*....
gi 568990480  409 IYTNRALCYLKLGQFEEAKLDCEQALQID 437
Cdd:pfam13181   3 AYYNLGLIYLKLGDYEEAKEYYEKALELD 31
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 28-80 2.81e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 2.81e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 568990480   28 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDN 80
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 369-437 3.24e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.79  E-value: 3.24e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568990480 369 DEKMFQALKEEGNQLVKDKNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQID 437
Cdd:COG5010   84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 245-440 4.22e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 38.25  E-value: 4.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 245 RAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDcgiqlasdsanriarilteld 324
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD--------------------- 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 325 gskwrerlppipavptseplrvwlpaaetpdqdpcPNNcmpsitdekmFQALKEEGNQLVKDKNYKDAISKYNECLKINS 404
Cdd:COG4783   69 -----------------------------------PDE----------PEARLNLGLALLKAGDYDEALALLEKALKLDP 103

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 568990480 405 KACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:COG4783  104 EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR_19 pfam14559
Tetratricopeptide repeat;
28-85 4.60e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 4.60e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 568990480   28 RWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKK 85
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
TPR_1 pfam00515
Tetratricopeptide repeat;
242-270 5.17e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.09  E-value: 5.17e-03
                          10        20
                  ....*....|....*....|....*....
gi 568990480  242 YSNRAACYLKEGNCRDCIQDCNRALELHP 270
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNP 32
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 187-303 7.23e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.63  E-value: 7.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 187 YPEEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQLEPTGSANADELSILYSNRAACYLKEGNCRDCIQDCNRAL 266
Cdd:COG5010    2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 568990480 267 ELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQID 303
Cdd:COG5010   82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 404-450 7.67e-03

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 38.47  E-value: 7.67e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 568990480  404 SKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALA 450
Cdd:TIGR02521  28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALY 74
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 387-440 8.09e-03

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 37.27  E-value: 8.09e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 568990480  387 KNYKDAISKYNECLKINSKACAIYTNRALCYLKLGQFEEAKLDCEQALQIDGEN 440
Cdd:TIGR02552  65 KEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 13-106 8.76e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 8.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480   13 AIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNVKALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVER 92
Cdd:TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYL 544

                          90
                  ....*....|....
gi 568990480   93 DLKNSEPVSELQTK 106
Cdd:TIGR02917 545 RTGNEEEAVAWLEK 558
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 202-324 9.30e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.09  E-value: 9.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568990480 202 RRGNELFRGGQFAEAAAQYSVAIaQLEPTgsaNADelsiLYSNRAACYLKEGNCRDCIQDCNRALELHPFSVKPLLRRAM 281
Cdd:COG4783    9 ALAQALLLAGDYDEAEALLEKAL-ELDPD---NPE----AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 568990480 282 AYETLEQYRNAYVDYKTVLQIDcgiQLASDSANRIARILTELD 324
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLD---PEHPEAYLRLARAYRALG 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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