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Conserved domains on  [gi|568968318|ref|XP_006514071|]
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cilia- and flagella-associated protein 410 isoform X1 [Mus musculus]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 1903219)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

CATH:  3.80.10.10
Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPP1R42 super family cl42388
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 40-130 6.45e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


The actual alignment was detected with superfamily member cd21340:

Pssm-ID: 455733 [Multi-domain]  Cd Length: 220  Bit Score: 54.79  E-value: 6.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968318  40 PSLEVITLSVNSVSTLEPVRSCRRLSELYLRRNRIPSLNELF-YLKDLPHLRVLWLAENPCCgtSPHLYRMTVLRNLPHL 118
Cdd:cd21340  120 NSLRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLdLLSSWPSLRELDLTGNPVC--KKPKYRDKIILASKSL 197

                         90
                 ....*....|..
gi 568968318 119 QKLDNQAVTEEE 130
Cdd:cd21340  198 EVLDGKEITDTE 209
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 40-130 6.45e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 54.79  E-value: 6.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968318  40 PSLEVITLSVNSVSTLEPVRSCRRLSELYLRRNRIPSLNELF-YLKDLPHLRVLWLAENPCCgtSPHLYRMTVLRNLPHL 118
Cdd:cd21340  120 NSLRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLdLLSSWPSLRELDLTGNPVC--KKPKYRDKIILASKSL 197

                         90
                 ....*....|..
gi 568968318 119 QKLDNQAVTEEE 130
Cdd:cd21340  198 EVLDGKEITDTE 209
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
15-122 1.59e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 54.94  E-value: 1.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968318  15 SELHNVRKLNCWGSQLTDISIC-REMPSLEVITLSVNSVSTL-EPVRSCRRLSELYLRRNRIPSLNELfyLKDLPHLRVL 92
Cdd:COG4886  110 SNLTNLESLDLSGNQLTDLPEElANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLPEE--LGNLTNLKEL 187

                         90       100       110
                 ....*....|....*....|....*....|
gi 568968318  93 WLAENPCCGTSPHLYrmtvlrNLPHLQKLD 122
Cdd:COG4886  188 DLSNNQITDLPEPLG------NLTNLEELD 211
LRR_9 pfam14580
Leucine-rich repeat;
64-134 2.05e-03

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 38.21  E-value: 2.05e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568968318   64 LSELYLRRNRIPSLNELFYLKDLPHLRVLWLAENPCCgTSPHlYRMTVLRNLPHLQKLDNQAVTEEELTRA 134
Cdd:pfam14580  90 LTELILTNNNLQELGDLDPLASLKKLTFLSLLRNPVT-NKPH-YRLYVIYKVPQLRLLDFRKVKQKERQAA 158
 
Name Accession Description Interval E-value
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 40-130 6.45e-09

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 54.79  E-value: 6.45e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968318  40 PSLEVITLSVNSVSTLEPVRSCRRLSELYLRRNRIPSLNELF-YLKDLPHLRVLWLAENPCCgtSPHLYRMTVLRNLPHL 118
Cdd:cd21340  120 NSLRVLNISGNNIDSLEPLAPLRNLEQLDASNNQISDLEELLdLLSSWPSLRELDLTGNPVC--KKPKYRDKIILASKSL 197

                         90
                 ....*....|..
gi 568968318 119 QKLDNQAVTEEE 130
Cdd:cd21340  198 EVLDGKEITDTE 209
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
15-122 1.59e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 54.94  E-value: 1.59e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968318  15 SELHNVRKLNCWGSQLTDISIC-REMPSLEVITLSVNSVSTL-EPVRSCRRLSELYLRRNRIPSLNELfyLKDLPHLRVL 92
Cdd:COG4886  110 SNLTNLESLDLSGNQLTDLPEElANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLPEE--LGNLTNLKEL 187

                         90       100       110
                 ....*....|....*....|....*....|
gi 568968318  93 WLAENPCCGTSPHLYrmtvlrNLPHLQKLD 122
Cdd:COG4886  188 DLSNNQITDLPEPLG------NLTNLEELD 211
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
15-122 2.18e-08

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 54.55  E-value: 2.18e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968318  15 SELHNVRKLNCWGSQLTDI-SICREMPSLEVITLSVNSVSTL-EPVRSCRRLSELYLRRNRIPSLNElfYLKDLPHLRVL 92
Cdd:COG4886  133 ANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLPE--PLGNLTNLEEL 210

                         90       100       110
                 ....*....|....*....|....*....|....
gi 568968318  93 WLAENpccgtsphlyRMT----VLRNLPHLQKLD 122
Cdd:COG4886  211 DLSGN----------QLTdlpePLANLTNLETLD 234
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
15-139 2.76e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 51.09  E-value: 2.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968318  15 SELHNVRKLNCWGSQLTDISIC-REMPSLEVITLSVNSVSTLEPVRSCRRLSELYLRRNRIPSLNElfyLKDLPHLRVLW 93
Cdd:COG4886  202 GNLTNLEELDLSGNQLTDLPEPlANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPP---LANLTNLKTLD 278

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 568968318  94 LAENPCcgTSPHLYRMTVLRNLPHLQKLDNQAVTEEELTRALMEGD 139
Cdd:COG4886  279 LSNNQL--TDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTT 322
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 23-130 7.27e-05

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 42.85  E-value: 7.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568968318  23 LNCWGSQLTDISICREMPSLEVITLSVNSVSTLEPVRSCRRLSELYLRRNRIPSLNelfYLKDLPHLRVLWLAENpccgt 102
Cdd:cd21340    7 LYLNDKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIE---NLENLVNLKKLYLGGN----- 78

                         90       100       110
                 ....*....|....*....|....*....|...
gi 568968318 103 sphlyRMTV---LRNLPHLQ--KLDNQAVTEEE 130
Cdd:cd21340   79 -----RISVvegLENLTNLEelHIENQRLPPGE 106
LRR_9 pfam14580
Leucine-rich repeat;
64-134 2.05e-03

Leucine-rich repeat;


Pssm-ID: 405295 [Multi-domain]  Cd Length: 175  Bit Score: 38.21  E-value: 2.05e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568968318   64 LSELYLRRNRIPSLNELFYLKDLPHLRVLWLAENPCCgTSPHlYRMTVLRNLPHLQKLDNQAVTEEELTRA 134
Cdd:pfam14580  90 LTELILTNNNLQELGDLDPLASLKKLTFLSLLRNPVT-NKPH-YRLYVIYKVPQLRLLDFRKVKQKERQAA 158
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 40-80 8.32e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 33.76  E-value: 8.32e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 568968318   40 PSLEVITLSVNSVSTLEPVRSCRRLSELYLRRN-RIPSLNEL 80
Cdd:pfam12799   1 PNLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDL 42
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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