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Conserved domains on  [gi|568923775|ref|XP_006502009|]
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uncharacterized protein C4orf17 homolog isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPATIAL super family cl21114
SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be ...
 2-76 3.77e-30

SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be involved in spermatid differentiation.


The actual alignment was detected with superfamily member pfam15256:

Pssm-ID: 464596  Cd Length: 201  Bit Score: 109.77  E-value: 3.77e-30
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568923775    2 CSAAAFQSSDAMSNRMDGNENTVHIPNYLDQEIKILAKLSEILHTDSLAEVLNWLLQASNKEKEWVSALVHSELA 76
Cdd:pfam15256 127 RATSRRSSSQSRRSKASSKGKTVCIPNYQDQELLILELLCQILQTDSLSAVQQWLLSAGPKEKDLVMGLIQSAVA 201
 
Name Accession Description Interval E-value
SPATIAL pfam15256
SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be ...
 2-76 3.77e-30

SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be involved in spermatid differentiation.


Pssm-ID: 464596  Cd Length: 201  Bit Score: 109.77  E-value: 3.77e-30
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568923775    2 CSAAAFQSSDAMSNRMDGNENTVHIPNYLDQEIKILAKLSEILHTDSLAEVLNWLLQASNKEKEWVSALVHSELA 76
Cdd:pfam15256 127 RATSRRSSSQSRRSKASSKGKTVCIPNYQDQELLILELLCQILQTDSLSAVQQWLLSAGPKEKDLVMGLIQSAVA 201
 
Name Accession Description Interval E-value
SPATIAL pfam15256
SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be ...
 2-76 3.77e-30

SPATIAL; SPATIAL (stromal protein associated with thymii and lymph node) proteins may be involved in spermatid differentiation.


Pssm-ID: 464596  Cd Length: 201  Bit Score: 109.77  E-value: 3.77e-30
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568923775    2 CSAAAFQSSDAMSNRMDGNENTVHIPNYLDQEIKILAKLSEILHTDSLAEVLNWLLQASNKEKEWVSALVHSELA 76
Cdd:pfam15256 127 RATSRRSSSQSRRSKASSKGKTVCIPNYQDQELLILELLCQILQTDSLSAVQQWLLSAGPKEKDLVMGLIQSAVA 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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