NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|568914389|ref|XP_006498439|]
View 

uncharacterized protein C9orf50 homolog isoform X5 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF4685 super family cl24340
Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is ...
 199-243 9.26e-15

Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is typically between 106 and 131 amino acids in length. There are two conserved sequence motifs: SGE and VRF.


The actual alignment was detected with superfamily member pfam15737:

Pssm-ID: 464834 [Multi-domain]  Cd Length: 117  Bit Score: 69.80  E-value: 9.26e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 568914389  199 HPPAGEGSRPRKRYCPFRVRFADETLQDTALRYWERNRAVRQNIF 243
Cdd:pfam15737  71 DSSSGEGQGPRRGMSPSRVRFEDESARDAELRYWERLQQRQQQVL 115
 
Name Accession Description Interval E-value
DUF4685 pfam15737
Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is ...
 199-243 9.26e-15

Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is typically between 106 and 131 amino acids in length. There are two conserved sequence motifs: SGE and VRF.


Pssm-ID: 464834 [Multi-domain]  Cd Length: 117  Bit Score: 69.80  E-value: 9.26e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 568914389  199 HPPAGEGSRPRKRYCPFRVRFADETLQDTALRYWERNRAVRQNIF 243
Cdd:pfam15737  71 DSSSGEGQGPRRGMSPSRVRFEDESARDAELRYWERLQQRQQQVL 115
 
Name Accession Description Interval E-value
DUF4685 pfam15737
Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is ...
 199-243 9.26e-15

Domain of unknown function (DUF4685); This domain family is found in eukaryotes, and is typically between 106 and 131 amino acids in length. There are two conserved sequence motifs: SGE and VRF.


Pssm-ID: 464834 [Multi-domain]  Cd Length: 117  Bit Score: 69.80  E-value: 9.26e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 568914389  199 HPPAGEGSRPRKRYCPFRVRFADETLQDTALRYWERNRAVRQNIF 243
Cdd:pfam15737  71 DSSSGEGQGPRRGMSPSRVRFEDESARDAELRYWERLQQRQQQVL 115
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH