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Conserved domains on  [gi|564389155|ref|XP_006253203|]
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LRP2-binding protein isoform X1 [Rattus norvegicus]

Protein Classification

SEL1-like repeat protein( domain architecture ID 11434924)

SEL1-like repeat family protein may function as an adaptor protein for the assembly of macromolecular complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  16870393
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
56-271 1.73e-33

TPR repeat [General function prediction only];


:

Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 124.27  E-value: 1.73e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  56 ANLVDTALQFLKERIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTVADAEKGVGYMKK 135
Cdd:COG0790   13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 136 ILDSSCPQtmhlkfaAAYNLGRAYFEGKGVKRSDEEAERLWLYAADNGNPKAsvkaQSILGLFYSMKE--PKDLEKAFFW 213
Cdd:COG0790   93 AAEQGDAE-------AQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 564389155 214 HSEACGNGNLESQGALGLMYFYGQGIRQDTDAALHCLREAAERGNVYAQGILVEYYYK 271
Cdd:COG0790  162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 313-347 1.63e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


:

Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.61  E-value: 1.63e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 564389155   313 AMASFYYARCLQLGLGITKDEASAKHYYSKACRLN 347
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
56-271 1.73e-33

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 124.27  E-value: 1.73e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  56 ANLVDTALQFLKERIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTVADAEKGVGYMKK 135
Cdd:COG0790   13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 136 ILDSSCPQtmhlkfaAAYNLGRAYFEGKGVKRSDEEAERLWLYAADNGNPKAsvkaQSILGLFYSMKE--PKDLEKAFFW 213
Cdd:COG0790   93 AAEQGDAE-------AQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 564389155 214 HSEACGNGNLESQGALGLMYFYGQGIRQDTDAALHCLREAAERGNVYAQGILVEYYYK 271
Cdd:COG0790  162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 224-258 3.74e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 40.23  E-value: 3.74e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 564389155   224 ESQGALGLMYFYGQGIRQDTDAALHCLREAAERGN 258
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 224-257 8.35e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.43  E-value: 8.35e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 564389155  224 ESQGALGLMYFYGQGIRQDTDAALHCLREAAERG 257
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 313-347 1.63e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.61  E-value: 1.63e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 564389155   313 AMASFYYARCLQLGLGITKDEASAKHYYSKACRLN 347
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 313-347 2.99e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 34.80  E-value: 2.99e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 564389155  313 AMASFYYARCLQLGLGITKDEASAKHYYSKACRLN 347
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
 
Name Accession Description Interval E-value
TPR COG0790
TPR repeat [General function prediction only];
56-271 1.73e-33

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 124.27  E-value: 1.73e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  56 ANLVDTALQFLKERIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTVADAEKGVGYMKK 135
Cdd:COG0790   13 AAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFEK 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 136 ILDSSCPQtmhlkfaAAYNLGRAYFEGKGVKRSDEEAERLWLYAADNGNPKAsvkaQSILGLFYSMKE--PKDLEKAFFW 213
Cdd:COG0790   93 AAEQGDAE-------AQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADA----QYNLGLLYLNGEgvPKDPAKAAEW 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 564389155 214 HSEACGNGNLESQGALGLMYFYGQGIRQDTDAALHCLREAAERGNVYAQGILVEYYYK 271
Cdd:COG0790  162 YRKAAEQGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQGDADAQYNLGRLYLN 219
TPR COG0790
TPR repeat [General function prediction only];
31-256 6.84e-29

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 111.94  E-value: 6.84e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  31 SLSQYAAKQQTFFQWKKEKPDYYRHANLVDTALQFLKERIRKGDAMAYFLRGQLYfEEGW-----YEEALAQFEEIQEKD 105
Cdd:COG0790   19 AAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMY-AEGRgvpkdYEKALEWFEKAAEQG 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 106 H-QAIYQLGVMYYDGLGTVADAEKGVGYMKKILDSSCPQtmhlkfaAAYNLGRAYFEGKGVKRSDEEAERLWLYAADNGN 184
Cdd:COG0790   98 DaEAQYNLGLMYEEGLGVPQDYAKALEWYEKAAEQGDAD-------AQYNLGLLYLNGEGVPKDPAKAAEWYRKAAEQGD 170

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564389155 185 PKAsvkaQSILGLFYSMKE--PKDLEKAFFWHSEACGNGNLESQGALGLMYFYGQGIRQDTDAALHCLREAAER 256
Cdd:COG0790  171 ADA----QYNLGVLYENGRgvPKDPAKALEWYRKAAEQGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
150-346 3.55e-28

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 110.02  E-value: 3.55e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 150 AAAYNLGRAYFEGKGVKRSDEEAERLWLYAADNGNPKAsvkaQSILGLFYSMKE--PKDLEKAFFWHSEACGNGNLESQG 227
Cdd:COG0790   64 EAQYNLGLMYAEGRGVPKDYEKALEWFEKAAEQGDAEA----QYNLGLMYEEGLgvPQDYAKALEWYEKAAEQGDADAQY 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 228 ALGLMYFYGQGIRQDTDAALHCLREAAERGNVYAQGILVEYYYKMKF----FTKCVSFSKRIADydevhdipmiahvtdc 303
Cdd:COG0790  140 NLGLLYLNGEGVPKDPAKAAEWYRKAAEQGDADAQYNLGVLYENGRGvpkdPAKALEWYRKAAE---------------- 203

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 564389155 304 lpefisKGMAMASFYYARCLQLGLGITKDEASAKHYYSKACRL 346
Cdd:COG0790  204 ------QGDADAQYNLGRLYLNGEGVEKDLEKALRWLRKAAEQ 240
TPR COG0790
TPR repeat [General function prediction only];
150-347 9.02e-19

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 84.21  E-value: 9.02e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 150 AAAYNLGRAYFEGKGVKRSDEEAERLWLYAADNGNPKASVKAQSILGLFYSMKE--PKDLEKAFFWHSEACGNGNLESQG 227
Cdd:COG0790   24 AAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRgvPKDYEKALEWFEKAAEQGDAEAQY 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 228 ALGLMYFYGQGIRQDTDAALHCLREAAERGNVYAQGILVEYYYKMKFFTKcvSFSKRIADYDEVHDipmiahvtdclpef 307
Cdd:COG0790  104 NLGLMYEEGLGVPQDYAKALEWYEKAAEQGDADAQYNLGLLYLNGEGVPK--DPAKAAEWYRKAAE-------------- 167

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 564389155 308 isKGMAMASFYYARCLQLGLGITKDEASAKHYYSKACRLN 347
Cdd:COG0790  168 --QGDADAQYNLGVLYENGRGVPKDPAKALEWYRKAAEQG 205
TPR COG0790
TPR repeat [General function prediction only];
172-347 9.14e-11

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 61.48  E-value: 9.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 172 AERLWLYAADNGNPKASVKAQSILGLFYSMKEPKDLEKAFFWHSEACGNGNLESQGALGLMYFYGQGIRQDTDAALHCLR 251
Cdd:COG0790   12 AAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAEGRGVPKDYEKALEWFE 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 252 EAAERGNVYAQGILVEYYYK----MKFFTKCVSFSKRIADydevhdipmiahvtdclpefisKGMAMASFYYARCLQLGL 327
Cdd:COG0790   92 KAAEQGDAEAQYNLGLMYEEglgvPQDYAKALEWYEKAAE----------------------QGDADAQYNLGLLYLNGE 149

                        170       180
                 ....*....|....*....|
gi 564389155 328 GITKDEASAKHYYSKACRLN 347
Cdd:COG0790  150 GVPKDPAKAAEWYRKAAEQG 169
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 75-354 2.89e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.19  E-value: 2.89e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  75 AMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAI---YQLGVMYYDgLGtvaDAEKGVGYMKKILDSScPQtmhlKFAA 151
Cdd:COG2956    8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVeahLALGNLYRR-RG---EYDRAIRIHQKLLERD-PD----RAEA 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 152 AYNLGRAYFEGKgvkrSDEEAERLWLYAADNgNPKAsVKAQSILGLFYSMKepKDLEKAFFWHSEACGNGNLESQGALGL 231
Cdd:COG2956   79 LLELAQDYLKAG----LLDRAEELLEKLLEL-DPDD-AEALRLLAEIYEQE--GDWEKAIEVLERLLKLGPENAHAYCEL 150

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 232 MYFYGQgiRQDTDAALHCLREA--AERGNVYAQGILVEYYYKMKFFTKCVSFSKRIADYDevhdipmiahvtdclPEFIS 309
Cdd:COG2956  151 AELYLE--QGDYDEAIEALEKAlkLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD---------------PDYLP 213

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 564389155 310 KGMAMASFYYARclqlglgitKDEASAKHYYSKACRLNPTLADEL 354
Cdd:COG2956  214 ALPRLAELYEKL---------GDPEEALELLRKALELDPSDDLLL 249
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 53-256 3.66e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.80  E-value: 3.66e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  53 YRHANLVDTALQFLKERIRKGD--AMAYFLRGQLYFEEGWYEEALAQFEEIQEKDH---QAIYQLGVMYYDglgtVADAE 127
Cdd:COG2956   52 YRRRGEYDRAIRIHQKLLERDPdrAEALLELAQDYLKAGLLDRAEELLEKLLELDPddaEALRLLAEIYEQ----EGDWE 127

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 128 KGVGYMKKILDSScPQTMHlkfaAAYNLGRAYFEgkgvKRSDEEAERLWLYAADNgNPKaSVKAQSILGLFYSMKepKDL 207
Cdd:COG2956  128 KAIEVLERLLKLG-PENAH----AYCELAELYLE----QGDYDEAIEALEKALKL-DPD-CARALLLLAELYLEQ--GDY 194

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 564389155 208 EKAFFWHSEACGNGNLESQGALGLMYFYGQgiRQDTDAALHCLREAAER 256
Cdd:COG2956  195 EEAIAALERALEQDPDYLPALPRLAELYEK--LGDPEEALELLRKALEL 241
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 224-258 3.74e-05

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 40.23  E-value: 3.74e-05
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 564389155   224 ESQGALGLMYFYGQGIRQDTDAALHCLREAAERGN 258
Cdd:smart00671   2 EAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 32-128 6.73e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.60  E-value: 6.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  32 LSQYAAKQQTFFQWKKEKPDYYR-HANL---------VDTALQFLKE--RIRKGDAMAYFLRGQLYFEEGWYEEALAQFE 99
Cdd:COG3914   91 LGRYEEALALYRRALALNPDNAEaLFNLgnlllalgrLEEALAALRRalALNPDFAEAYLNLGEALRRLGRLEEAIAALR 170

                         90       100       110
                 ....*....|....*....|....*....|..
gi 564389155 100 ---EIQEKDHQAIYQLGVMYYDgLGTVADAEK 128
Cdd:COG3914  171 ralELDPDNAEALNNLGNALQD-LGRLEEAIA 201
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 60-272 7.94e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.95  E-value: 7.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  60 DTALQFLKE--RIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQ---AIYQLGVMYYDgLGTVADAEKgvgYMK 134
Cdd:COG2956   25 DKAIDLLEEalELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDraeALLELAQDYLK-AGLLDRAEE---LLE 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 135 KILDSScpqtmHLKFAAAYNLGRAYFEGKGVKRSDEEAERLwlyAADNGNpkaSVKAQSILGLFYSMKepKDLEKAFFWH 214
Cdd:COG2956  101 KLLELD-----PDDAEALRLLAEIYEQEGDWEKAIEVLERL---LKLGPE---NAHAYCELAELYLEQ--GDYDEAIEAL 167

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564389155 215 SEACG--NGNLESQGALGLMYFygqgIRQDTDAALHCLREAAERGNVYAQGI--LVEYYYKM 272
Cdd:COG2956  168 EKALKldPDCARALLLLAELYL----EQGDYEEAIAALERALEQDPDYLPALprLAELYEKL 225
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 224-257 8.35e-05

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 39.43  E-value: 8.35e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 564389155  224 ESQGALGLMYFYGQGIRQDTDAALHCLREAAERG 257
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
69-271 8.86e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.46  E-value: 8.86e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  69 RIRKGDAMAYFLRGQLYFEEGWYEEALAQFE---EIQEKDHQAIYQLGVMYYDgLGTVADAEKgvgYMKKILDsscpqtM 145
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEkalELDPDDAEALYNLGLAYLR-LGRYEEALA---DYEQALE------L 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 146 HLKFAAAY-NLGRAYFEgkgvKRSDEEAERLWLYAADNgNPKaSVKAQSILGLFYSMKepKDLEKAFFWHSEAC--GNGN 222
Cdd:COG0457   72 DPDDAEALnNLGLALQA----LGRYEEALEDYDKALEL-DPD-DAEALYNLGLALLEL--GRYDEAIEAYERALelDPDD 143

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 564389155 223 LESQGALGLMYFYgqgiRQDTDAALHCLREAAERGNVYAQGILVEYYYK 271
Cdd:COG0457  144 ADALYNLGIALEK----LGRYEEALELLEKLEAAALAALLAAALGEAAL 188
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 151-184 1.34e-04

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 38.69  E-value: 1.34e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 564389155   151 AAYNLGRAYFEGKGVKRSDEEAERLWLYAADNGN 184
Cdd:smart00671   3 AQYNLGQMYEYGLGVPKDLEKALEYYKKAAELGN 36
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 51-177 2.30e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 2.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  51 DYYRHANLVDTALQFLKE--RIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEI--QEKDHQAIYQLGVMYYDGLGTVADA 126
Cdd:COG2956  152 ELYLEQGDYDEAIEALEKalKLDPDCARALLLLAELYLEQGDYEEAIAALERAleQDPDYLPALPRLAELYEKLGDPEEA 231

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 564389155 127 EKgvgYMKKILDSscpqtmHLKFAAAYNLGRAYFEGKGvkrsDEEAERLWL 177
Cdd:COG2956  232 LE---LLRKALEL------DPSDDLLLALADLLERKEG----LEAALALLE 269
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 150-183 2.53e-04

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 37.89  E-value: 2.53e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 564389155  150 AAAYNLGRAYFEGKGVKRSDEEAERLWLYAADNG 183
Cdd:pfam08238   2 EAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 62-192 3.55e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 39.99  E-value: 3.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  62 ALQFLKERIRK--GDAMAYFLRGQLYFEEGWYEEALAQFE---EIQEKDHQAIYQLGVMYYDGlgtvADAEKGVGYMKKI 136
Cdd:COG4235    2 AIARLRQALAAnpNDAEGWLLLGRAYLRLGRYDEALAAYEkalRLDPDNADALLDLAEALLAA----GDTEEAEELLERA 77

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564389155 137 L--DSSCPQtmhlkfaAAYNLGRAYFEgkgvKRSDEEAERLW---LYAADNGNPKASVKAQ 192
Cdd:COG4235   78 LalDPDNPE-------ALYLLGLAAFQ----QGDYAEAIAAWqklLALLPADAPARLLEAS 127
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
60-161 3.94e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.53  E-value: 3.94e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  60 DTALQFLKE--RIRKGDAMAYFLRGQLYFEEGWYEEALAQFE---EIQEKDHQAIYQLGVMYYDgLGTVADAEKgvgYMK 134
Cdd:COG0457   25 EEAIEDYEKalELDPDDAEALYNLGLAYLRLGRYEEALADYEqalELDPDDAEALNNLGLALQA-LGRYEEALE---DYD 100

                         90       100
                 ....*....|....*....|....*...
gi 564389155 135 KILDsscpqtMHLKFAAAY-NLGRAYFE 161
Cdd:COG0457  101 KALE------LDPDDAEALyNLGLALLE 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 60-182 1.12e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.02  E-value: 1.12e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  60 DTALQFLKERIRK--GDAMAYFLRGQLYFEEGWYEEALAQFEE---IQEKDHQAIYQLGVMYYDgLGTVADAEKgvgYMK 134
Cdd:COG4783   21 DEAEALLEKALELdpDNPEAFALLGEILLQLGDLDEAIVLLHEaleLDPDEPEARLNLGLALLK-AGDYDEALA---LLE 96

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 564389155 135 KILDSScPQTMhlkfAAAYNLGRAYFEGKGVKRSDEEAERLWLYAADN 182
Cdd:COG4783   97 KALKLD-PEHP----EAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
SEL1 smart00671
Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
 313-347 1.63e-03

Sel1-like repeats; These represent a subfamily of TPR (tetratricopeptide repeat) sequences.


Pssm-ID: 214772 [Multi-domain]  Cd Length: 36  Bit Score: 35.61  E-value: 1.63e-03
                           10        20        30
                   ....*....|....*....|....*....|....*
gi 564389155   313 AMASFYYARCLQLGLGITKDEASAKHYYSKACRLN 347
Cdd:smart00671   1 AEAQYNLGQMYEYGLGVPKDLEKALEYYKKAAELG 35
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 51-118 2.28e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.68  E-value: 2.28e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564389155  51 DYYRHANLVDTALQFLKE--RIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDH---QAIYQLGVMYYD 118
Cdd:COG4235   25 RAYLRLGRYDEALAAYEKalRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPdnpEALYLLGLAAFQ 97
Sel1 pfam08238
Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.
 313-347 2.99e-03

Sel1 repeat; This short repeat is found in the Sel1 protein. It is related to TPR repeats.


Pssm-ID: 429881 [Multi-domain]  Cd Length: 35  Bit Score: 34.80  E-value: 2.99e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 564389155  313 AMASFYYARCLQLGLGITKDEASAKHYYSKACRLN 347
Cdd:pfam08238   1 AEAQYRLGYLYLYGLGVPKDPEKALEWYEKAAELG 35
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 53-128 3.59e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 3.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  53 YRHANLVDTALQFLKE--RIRKGDAMAYFLRGQLYFEEGWYEEALAQFE---EIQEKDHQAIYQLGVMYYDgLGTVADAE 127
Cdd:COG4783   48 LLQLGDLDEAIVLLHEalELDPDEPEARLNLGLALLKAGDYDEALALLEkalKLDPEHPEAYLRLARAYRA-LGRPDEAI 126


                 .
gi 564389155 128 K 128
Cdd:COG4783  127 A 127
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
53-128 4.03e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 38.45  E-value: 4.03e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  53 YRHANLVDTALQFLKE--RIRKGDAMAYFLRGQLYFEEGWYEEALAQFE---EIQEKDHQAIYQLGVMYYDgLGTVADAE 127
Cdd:COG0457   86 LQALGRYEEALEDYDKalELDPDDAEALYNLGLALLELGRYDEAIEAYEralELDPDDADALYNLGIALEK-LGRYEEAL 164


                 .
gi 564389155 128 K 128
Cdd:COG0457  165 E 165
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 75-210 5.78e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 38.82  E-value: 5.78e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  75 AMAYFLRGQLYFEEGWYEEALAQFE---EIQEKDHQAIYQLGVMYYDgLGTVADAEKgvgYMKKILDsscpqtMHLKFAA 151
Cdd:COG3914   78 AALLELAALLLQALGRYEEALALYRralALNPDNAEALFNLGNLLLA-LGRLEEALA---ALRRALA------LNPDFAE 147

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155 152 AY-NLGRAYFEgkgvKRSDEEAERLWLYAADNgNPKaSVKAQSILGLFYsmKEPKDLEKA 210
Cdd:COG3914  148 AYlNLGEALRR----LGRLEEAIAALRRALEL-DPD-NAEALNNLGNAL--QDLGRLEEA 199
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
52-128 8.88e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.15  E-value: 8.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564389155  52 YYRHANLVDTALQFLKE--RIRKGDAMAYFLRGQLYFEEGWYEEALA--QFEEIQEKDHQAIYQLGVMYYDgLGTVADAE 127
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKalELDPDNADALNNLGLLLLEQGRYDEAIAleKALKLDPNNAEALLNLAELLLE-LGDYDEAL 79


                 .
gi 564389155 128 K 128
Cdd:COG3063   80 A 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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