|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
56-237 |
1.24e-55 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
:
Pssm-ID: 214560 Cd Length: 184 Bit Score: 191.42 E-value: 1.24e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 56 GFNLIRRLNLM-KTSAIKKIRNPKGP-LILRLG-AAPLTQATRRVFPRGLPEEFALVLTVLLKKhtfRNTWYLFQVTDAN 132
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 133 GYPQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDCVSASSQPLGPR--QPIRPGG 210
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 564353025 211 HVFLGLDAEQGKPVSFDLQQAHIYCDP 237
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1051-1273 |
2.26e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 105.37 E-value: 2.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1051 GSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGP 1130
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1131 RGERGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKaGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDG 1210
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564353025 1211 LDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1273
Cdd:NF038329 276 KDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
550-809 |
1.14e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 87.65 E-value: 1.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 550 EGLGTVGLKGDRGDPGIQGMKGEKGEPcsscssgvgaqhlGPSTGvnedmgspvHGLPGLPGKPGIPGPRGMKGEKGSFG 629
Cdd:NF038329 108 EGLQQLKGDGEKGEPGPAGPAGPAGEQ-------------GPRGD---------RGETGPAGPAGPPGPQGERGEKGPAG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 630 DAGPAGVAGPPGPVGPAGIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGLKGQKG 709
Cdd:NF038329 166 PQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTG 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 710 DAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGAltdVSGLPGKPGPKGEPGPEGVgrPGKPGQPG 789
Cdd:NF038329 246 EDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG---KDGLPGKDGKDGQNGKDGL--PGKDGKDG 320
|
250 260
....*....|....*....|
gi 564353025 790 LPGVQGPPGLKGTQGEPGPP 809
Cdd:NF038329 321 QPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1210-1509 |
1.80e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 68.39 E-value: 1.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1210 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPgppghlgp 1289
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPR-------- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1290 qgppgqpgppglstmGLKGDRGSPGERGLAGlpgqpgtpghpgppgEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQ 1369
Cdd:NF038329 198 ---------------GETGPAGEQGPAGPAG---------------PDGEAGPAGEDGPAGPAG-------------DGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1370 KGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvNYDDikrfirqeiiklfderm 1449
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQ--NGKD----------------- 295
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1450 ayytsrmqfpmevaaapGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPG 1509
Cdd:NF038329 296 -----------------GLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
845-1130 |
3.44e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.16 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 845 GAQGPPGPKGATGPMGPPGASisGPPGQKGSRGEKGEPGEcscpsRGEPIFSGMPGAPGlwmgsssqpgpqgPPGVPGPP 924
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPR--GDRGETGPAGPAGPPGP-----QGERGEKGPAGPQG-------------EAGPQGPA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 925 GPPGMPGLQGVPGHNGLPGQPGLTAELGslpieqhllksicgdcAQGQAAHSASllvKGEKGDQGVPGVPGfndcarcfi 1004
Cdd:NF038329 177 GKDGEAGAKGPAGEKGPQGPRGETGPAG----------------EQGPAGPAGP---DGEAGPAGEDGPAG--------- 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1005 ererpraeeARGDNSEGEPGCPGSPGLPGPPGMPGQRGEEGPPGMRGSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPG 1084
Cdd:NF038329 229 ---------PAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPG 299
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 564353025 1085 YPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGP 1130
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
384-439 |
8.63e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
:
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.93 E-value: 8.63e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 564353025 384 GEKGESGDLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQ 439
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
56-237 |
1.24e-55 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 191.42 E-value: 1.24e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 56 GFNLIRRLNLM-KTSAIKKIRNPKGP-LILRLG-AAPLTQATRRVFPRGLPEEFALVLTVLLKKhtfRNTWYLFQVTDAN 132
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 133 GYPQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDCVSASSQPLGPR--QPIRPGG 210
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 564353025 211 HVFLGLDAEQGKPVSFDLQQAHIYCDP 237
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1051-1273 |
2.26e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 105.37 E-value: 2.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1051 GSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGP 1130
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1131 RGERGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKaGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDG 1210
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564353025 1211 LDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1273
Cdd:NF038329 276 KDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
550-809 |
1.14e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 87.65 E-value: 1.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 550 EGLGTVGLKGDRGDPGIQGMKGEKGEPcsscssgvgaqhlGPSTGvnedmgspvHGLPGLPGKPGIPGPRGMKGEKGSFG 629
Cdd:NF038329 108 EGLQQLKGDGEKGEPGPAGPAGPAGEQ-------------GPRGD---------RGETGPAGPAGPPGPQGERGEKGPAG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 630 DAGPAGVAGPPGPVGPAGIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGLKGQKG 709
Cdd:NF038329 166 PQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTG 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 710 DAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGAltdVSGLPGKPGPKGEPGPEGVgrPGKPGQPG 789
Cdd:NF038329 246 EDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG---KDGLPGKDGKDGQNGKDGL--PGKDGKDG 320
|
250 260
....*....|....*....|
gi 564353025 790 LPGVQGPPGLKGTQGEPGPP 809
Cdd:NF038329 321 QPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1096-1411 |
7.48e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 82.26 E-value: 7.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1096 GIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGfqgqpgfpgppgppgfpgKAGAPGPPGP 1175
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQG------------------EAGPQGPAGK 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1176 QAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGlmgppgfKGKTGHPGLPGPKGDCG 1255
Cdd:NF038329 179 DGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQ-------QGPDGDPGPTGEDGPQG 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1256 KPGPPGSSGRPGAEGEPGamgpqgrpgppghlgpqgppgqpgppglstmgLKGDRGSPGERGLAGLPGQPGtpghpgppg 1335
Cdd:NF038329 252 PDGPAGKDGPRGDRGEAG--------------------------------PDGPDGKDGERGPVGPAGKDG--------- 290
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564353025 1336 epgsdgAAGKEGPPGKQGlygppgpkgdpgpagQKGQAgekGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGP 1411
Cdd:NF038329 291 ------QNGKDGLPGKDG---------------KDGQN---GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
727-884 |
1.57e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 74.94 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 727 GMSGEPGVRGPAGPKGEKGDgctacpslqgalTDVSGLPGKPGPKGEPGPEG-VGRPGKPGQPGLPGVQGPPGLKGTQGE 805
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGP------------RGDRGETGPAGPAGPPGPQGeRGEKGPAGPQGEAGPQGPAGKDGEAGA 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 806 PGPPG-TGAEGPQGEPGtpglpgiqgppgprgppgSTGEHGAQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGE 884
Cdd:NF038329 185 KGPAGeKGPQGPRGETG------------------PAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGE 246
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1210-1509 |
1.80e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 68.39 E-value: 1.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1210 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPgppghlgp 1289
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPR-------- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1290 qgppgqpgppglstmGLKGDRGSPGERGLAGlpgqpgtpghpgppgEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQ 1369
Cdd:NF038329 198 ---------------GETGPAGEQGPAGPAG---------------PDGEAGPAGEDGPAGPAG-------------DGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1370 KGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvNYDDikrfirqeiiklfderm 1449
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQ--NGKD----------------- 295
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1450 ayytsrmqfpmevaaapGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPG 1509
Cdd:NF038329 296 -----------------GLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1239-1518 |
1.08e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 65.70 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1239 KGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHLGPQGPPGQPgppglstmGLKGDRGSPGERGL 1318
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA--------GAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1319 AGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQKGQAGEKGRSGMPGGPGKsgsmgpigppg 1398
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-------------DGQQGPDGDPGPTGEDGPQGP----------- 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1399 pageRGHPGSPGPAGNPGLPGLPGSMGDmvnyddikrfirqeiiklfdermayytsrmqfpmevAAAPGRPGPPGKDGAP 1478
Cdd:NF038329 253 ----DGPAGKDGPRGDRGEAGPDGPDGK------------------------------------DGERGPVGPAGKDGQN 292
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 564353025 1479 GRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1518
Cdd:NF038329 293 GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
845-1130 |
3.44e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.16 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 845 GAQGPPGPKGATGPMGPPGASisGPPGQKGSRGEKGEPGEcscpsRGEPIFSGMPGAPGlwmgsssqpgpqgPPGVPGPP 924
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPR--GDRGETGPAGPAGPPGP-----QGERGEKGPAGPQG-------------EAGPQGPA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 925 GPPGMPGLQGVPGHNGLPGQPGLTAELGslpieqhllksicgdcAQGQAAHSASllvKGEKGDQGVPGVPGfndcarcfi 1004
Cdd:NF038329 177 GKDGEAGAKGPAGEKGPQGPRGETGPAG----------------EQGPAGPAGP---DGEAGPAGEDGPAG--------- 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1005 ererpraeeARGDNSEGEPGCPGSPGLPGPPGMPGQRGEEGPPGMRGSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPG 1084
Cdd:NF038329 229 ---------PAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPG 299
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 564353025 1085 YPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGP 1130
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1305-1518 |
5.90e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.39 E-value: 5.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1305 GLKGDRGSPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGlygppgpkgDPGPAGQKGQAGEKGRSGMPGG 1384
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAG---------PQGEAGPQGPAGKDGEAGAKGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1385 PGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRfirqeiiklfdermayytsRMQFPMEVAA 1464
Cdd:NF038329 188 AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD-------------------GDPGPTGEDG 248
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564353025 1465 APGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1518
Cdd:NF038329 249 PQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
851-1144 |
6.00e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.39 E-value: 6.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 851 GPKGATGPMGPPGASisGPPGQKGSRGEKGEPGEcscpsrgepifsgmpgapglwmgsssqpgpqgppgvpgppgppgmp 930
Cdd:NF038329 117 GEKGEPGPAGPAGPA--GEQGPRGDRGETGPAGP---------------------------------------------- 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 931 glqgvPGHNGLPGQPGLTAELGslpieqhllksicgdcAQGQAAHSASLLVKGEKGDQGVPGVPGFNDcarcfiERERPR 1010
Cdd:NF038329 149 -----AGPPGPQGERGEKGPAG----------------PQGEAGPQGPAGKDGEAGAKGPAGEKGPQG------PRGETG 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1011 AEEARGDNSEGEPGCPGSPGLPGPPGMPGQRGEEGPPGMRGSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGAMG 1090
Cdd:NF038329 202 PAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 564353025 1091 PPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKG 1144
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
405-772 |
1.83e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 58.76 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 405 GQKGEKGDGGLKGLPGKPGRDGRPGEIcviGPKGQKGDPGFVGPEGLAGEPGPPGLpgppgiglpgtpgdpggppgpkga 484
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGET---GPAGPAGPPGPQGERGEKGPAGPQGE------------------------ 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 485 kgsSGIPGKEGPGGKPGKPGVPGTKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPAPAreGLGTVGLKGDRGDP 564
Cdd:NF038329 170 ---AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPA--GDGQQGPDGDPGPT 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 565 GIQGMKGEKGEPCSScssgvgaqhlgpstgvnedmgspvhGLPGLPGKPGIPGPRGMKGEKGSFGDAGpagvagppgpvg 644
Cdd:NF038329 245 GEDGPQGPDGPAGKD-------------------------GPRGDRGEAGPDGPDGKDGERGPVGPAG------------ 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 645 pagikgakgepcepcaslsklQDGDTQVVHLPGPAGekgepgppgsglpgKQGRAGERGLKGQKGDAGNPGDPGTPGITG 724
Cdd:NF038329 288 ---------------------KDGQNGKDGLPGKDG--------------KDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 564353025 725 QPGMSGEPGVRGPAGP-KGEKGDGCTACPSLQGALTDVSGLPGKPGPKG 772
Cdd:NF038329 333 KDGQPGKPAPKTPEVPqKPDTAPHTPKTPQIPGQSKDVTPAPQNPSNRG 381
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1089-1142 |
3.58e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 45.56 E-value: 3.58e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 564353025 1089 MGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGE 1142
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1369-1547 |
8.13e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 47.21 E-value: 8.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1369 QKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvnyddikrfirqeiiklfder 1448
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------------------- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1449 mayytsrmqfpmevaaaPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG-VGIAGENGL 1527
Cdd:NF038329 170 -----------------AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGeDGPAGPAGD 232
|
170 180
....*....|....*....|
gi 564353025 1528 PGPPGPQGPPGYGKMGATGP 1547
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGP 252
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
699-870 |
5.03e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 44.64 E-value: 5.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 699 AGERGLKGQKGDAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGALTDvsglPGKPGPKGEPGPEG 778
Cdd:COG5164 66 AGNQGATGPAQNQGGTTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTT----PPSGGSTTPPGDGG 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 779 VGRPGkPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPPGSTGEHGAQGPPGPKGATGP 858
Cdd:COG5164 142 STPPG-PGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNP 220
|
170
....*....|..
gi 564353025 859 mgPPGASISGPP 870
Cdd:COG5164 221 --PDDRGGKTGP 230
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1466-1518 |
6.16e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 6.16e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 564353025 1466 PGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1518
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
1045-1273 |
1.12e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 43.48 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1045 GPPGMRGSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAG---PAGEKGESGPPGSEGL 1121
Cdd:COG5164 19 TPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGgttPAQNQGGTRPAGNTGG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1122 PGPQGPAGPRGERGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGMrGPSGLPGSPGPPGPPG 1201
Cdd:COG5164 99 TTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTTPPGD-GGSTTPPGPGGSTTPP 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564353025 1202 IQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHP----GLPGPKGDCGKPGPPGSSGRPGAEGEPG 1273
Cdd:COG5164 178 DDGGSTTPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPIERRGPERPEAAAL 253
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
766-884 |
4.86e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 766 GKPGPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPPGSTGEHG 845
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110
....*....|....*....|....*....|....*....
gi 564353025 846 AQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGE 884
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
384-439 |
8.63e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.93 E-value: 8.63e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 564353025 384 GEKGESGDLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQ 439
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
347-429 |
8.82e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 40.66 E-value: 8.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 347 DQGLTGPSGPKGEKGARGndcvrisPDGP-----LQCAEGPKGEKGESGDLGPSGLPGPTGQKGQKGEkgdgglKGLPGK 421
Cdd:NF038329 264 DRGEAGPDGPDGKDGERG-------PVGPagkdgQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGK------DGLPGK 330
|
....*...
gi 564353025 422 PGRDGRPG 429
Cdd:NF038329 331 DGKDGQPG 338
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
56-237 |
1.24e-55 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 191.42 E-value: 1.24e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 56 GFNLIRRLNLM-KTSAIKKIRNPKGP-LILRLG-AAPLTQATRRVFPRGLPEEFALVLTVLLKKhtfRNTWYLFQVTDAN 132
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 133 GYPQVSLEVNSQERTLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVASRVASVHVDCVSASSQPLGPR--QPIRPGG 210
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 564353025 211 HVFLGLDAEQGKPVSFDLQQAHIYCDP 237
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1051-1273 |
2.26e-23 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 105.37 E-value: 2.26e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1051 GSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGP 1130
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1131 RGERGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKaGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDG 1210
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564353025 1211 LDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1273
Cdd:NF038329 276 KDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
550-809 |
1.14e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 87.65 E-value: 1.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 550 EGLGTVGLKGDRGDPGIQGMKGEKGEPcsscssgvgaqhlGPSTGvnedmgspvHGLPGLPGKPGIPGPRGMKGEKGSFG 629
Cdd:NF038329 108 EGLQQLKGDGEKGEPGPAGPAGPAGEQ-------------GPRGD---------RGETGPAGPAGPPGPQGERGEKGPAG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 630 DAGPAGVAGPPGPVGPAGIKGAKGEPCEPCASLSKLQDGDTQVVHLPGPAGEKGEPGPPGSGLPGKQGRAGERGLKGQKG 709
Cdd:NF038329 166 PQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTG 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 710 DAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGAltdVSGLPGKPGPKGEPGPEGVgrPGKPGQPG 789
Cdd:NF038329 246 EDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG---KDGLPGKDGKDGQNGKDGL--PGKDGKDG 320
|
250 260
....*....|....*....|
gi 564353025 790 LPGVQGPPGLKGTQGEPGPP 809
Cdd:NF038329 321 QPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1096-1411 |
7.48e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 82.26 E-value: 7.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1096 GIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGfqgqpgfpgppgppgfpgKAGAPGPPGP 1175
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQG------------------EAGPQGPAGK 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1176 QAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGlmgppgfKGKTGHPGLPGPKGDCG 1255
Cdd:NF038329 179 DGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQ-------QGPDGDPGPTGEDGPQG 251
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1256 KPGPPGSSGRPGAEGEPGamgpqgrpgppghlgpqgppgqpgppglstmgLKGDRGSPGERGLAGLPGQPGtpghpgppg 1335
Cdd:NF038329 252 PDGPAGKDGPRGDRGEAG--------------------------------PDGPDGKDGERGPVGPAGKDG--------- 290
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564353025 1336 epgsdgAAGKEGPPGKQGlygppgpkgdpgpagQKGQAgekGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGP 1411
Cdd:NF038329 291 ------QNGKDGLPGKDG---------------KDGQN---GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
727-884 |
1.57e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 74.94 E-value: 1.57e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 727 GMSGEPGVRGPAGPKGEKGDgctacpslqgalTDVSGLPGKPGPKGEPGPEG-VGRPGKPGQPGLPGVQGPPGLKGTQGE 805
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGP------------RGDRGETGPAGPAGPPGPQGeRGEKGPAGPQGEAGPQGPAGKDGEAGA 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 806 PGPPG-TGAEGPQGEPGtpglpgiqgppgprgppgSTGEHGAQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGE 884
Cdd:NF038329 185 KGPAGeKGPQGPRGETG------------------PAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGE 246
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1210-1509 |
1.80e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 68.39 E-value: 1.80e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1210 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPgppghlgp 1289
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPR-------- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1290 qgppgqpgppglstmGLKGDRGSPGERGLAGlpgqpgtpghpgppgEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQ 1369
Cdd:NF038329 198 ---------------GETGPAGEQGPAGPAG---------------PDGEAGPAGEDGPAGPAG-------------DGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1370 KGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvNYDDikrfirqeiiklfderm 1449
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQ--NGKD----------------- 295
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1450 ayytsrmqfpmevaaapGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPG 1509
Cdd:NF038329 296 -----------------GLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1239-1518 |
1.08e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 65.70 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1239 KGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPGPPGHLGPQGPPGQPgppglstmGLKGDRGSPGERGL 1318
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA--------GAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1319 AGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQKGQAGEKGRSGMPGGPGKsgsmgpigppg 1398
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-------------DGQQGPDGDPGPTGEDGPQGP----------- 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1399 pageRGHPGSPGPAGNPGLPGLPGSMGDmvnyddikrfirqeiiklfdermayytsrmqfpmevAAAPGRPGPPGKDGAP 1478
Cdd:NF038329 253 ----DGPAGKDGPRGDRGEAGPDGPDGK------------------------------------DGERGPVGPAGKDGQN 292
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 564353025 1479 GRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1518
Cdd:NF038329 293 GKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
845-1130 |
3.44e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 64.16 E-value: 3.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 845 GAQGPPGPKGATGPMGPPGASisGPPGQKGSRGEKGEPGEcscpsRGEPIFSGMPGAPGlwmgsssqpgpqgPPGVPGPP 924
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPR--GDRGETGPAGPAGPPGP-----QGERGEKGPAGPQG-------------EAGPQGPA 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 925 GPPGMPGLQGVPGHNGLPGQPGLTAELGslpieqhllksicgdcAQGQAAHSASllvKGEKGDQGVPGVPGfndcarcfi 1004
Cdd:NF038329 177 GKDGEAGAKGPAGEKGPQGPRGETGPAG----------------EQGPAGPAGP---DGEAGPAGEDGPAG--------- 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1005 ererpraeeARGDNSEGEPGCPGSPGLPGPPGMPGQRGEEGPPGMRGSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPG 1084
Cdd:NF038329 229 ---------PAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPG 299
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 564353025 1085 YPGAMGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGP 1130
Cdd:NF038329 300 KDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1305-1518 |
5.90e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.39 E-value: 5.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1305 GLKGDRGSPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGlygppgpkgDPGPAGQKGQAGEKGRSGMPGG 1384
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAG---------PQGEAGPQGPAGKDGEAGAKGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1385 PGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRfirqeiiklfdermayytsRMQFPMEVAA 1464
Cdd:NF038329 188 AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD-------------------GDPGPTGEDG 248
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564353025 1465 APGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1518
Cdd:NF038329 249 PQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
851-1144 |
6.00e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.39 E-value: 6.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 851 GPKGATGPMGPPGASisGPPGQKGSRGEKGEPGEcscpsrgepifsgmpgapglwmgsssqpgpqgppgvpgppgppgmp 930
Cdd:NF038329 117 GEKGEPGPAGPAGPA--GEQGPRGDRGETGPAGP---------------------------------------------- 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 931 glqgvPGHNGLPGQPGLTAELGslpieqhllksicgdcAQGQAAHSASLLVKGEKGDQGVPGVPGFNDcarcfiERERPR 1010
Cdd:NF038329 149 -----AGPPGPQGERGEKGPAG----------------PQGEAGPQGPAGKDGEAGAKGPAGEKGPQG------PRGETG 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1011 AEEARGDNSEGEPGCPGSPGLPGPPGMPGQRGEEGPPGMRGSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGAMG 1090
Cdd:NF038329 202 PAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 564353025 1091 PPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKG 1144
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
405-772 |
1.83e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 58.76 E-value: 1.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 405 GQKGEKGDGGLKGLPGKPGRDGRPGEIcviGPKGQKGDPGFVGPEGLAGEPGPPGLpgppgiglpgtpgdpggppgpkga 484
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGET---GPAGPAGPPGPQGERGEKGPAGPQGE------------------------ 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 485 kgsSGIPGKEGPGGKPGKPGVPGTKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPAPAreGLGTVGLKGDRGDP 564
Cdd:NF038329 170 ---AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPA--GDGQQGPDGDPGPT 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 565 GIQGMKGEKGEPCSScssgvgaqhlgpstgvnedmgspvhGLPGLPGKPGIPGPRGMKGEKGSFGDAGpagvagppgpvg 644
Cdd:NF038329 245 GEDGPQGPDGPAGKD-------------------------GPRGDRGEAGPDGPDGKDGERGPVGPAG------------ 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 645 pagikgakgepcepcaslsklQDGDTQVVHLPGPAGekgepgppgsglpgKQGRAGERGLKGQKGDAGNPGDPGTPGITG 724
Cdd:NF038329 288 ---------------------KDGQNGKDGLPGKDG--------------KDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 564353025 725 QPGMSGEPGVRGPAGP-KGEKGDGCTACPSLQGALTDVSGLPGKPGPKG 772
Cdd:NF038329 333 KDGQPGKPAPKTPEVPqKPDTAPHTPKTPQIPGQSKDVTPAPQNPSNRG 381
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1089-1142 |
3.58e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 45.56 E-value: 3.58e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 564353025 1089 MGPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGE 1142
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1369-1547 |
8.13e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 47.21 E-value: 8.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1369 QKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvnyddikrfirqeiiklfder 1448
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------------------- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1449 mayytsrmqfpmevaaaPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG-VGIAGENGL 1527
Cdd:NF038329 170 -----------------AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGeDGPAGPAGD 232
|
170 180
....*....|....*....|
gi 564353025 1528 PGPPGPQGPPGYGKMGATGP 1547
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGP 252
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
699-870 |
5.03e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 44.64 E-value: 5.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 699 AGERGLKGQKGDAGNPGDPGTPGITGQPGMSGEPGVRGPAGPKGEKGDGCTACPSLQGALTDvsglPGKPGPKGEPGPEG 778
Cdd:COG5164 66 AGNQGATGPAQNQGGTTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTT----PPSGGSTTPPGDGG 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 779 VGRPGkPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPPGSTGEHGAQGPPGPKGATGP 858
Cdd:COG5164 142 STPPG-PGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNP 220
|
170
....*....|..
gi 564353025 859 mgPPGASISGPP 870
Cdd:COG5164 221 --PDDRGGKTGP 230
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1466-1518 |
6.16e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 6.16e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 564353025 1466 PGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKGDIG 1518
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1465-1515 |
7.07e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.01 E-value: 7.07e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 564353025 1465 APGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGDKG 1515
Cdd:pfam01391 5 PPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
1045-1273 |
1.12e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 43.48 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1045 GPPGMRGSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYAG---PAGEKGESGPPGSEGL 1121
Cdd:COG5164 19 TPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGgttPAQNQGGTRPAGNTGG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1122 PGPQGPAGPRGERGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPPGPQAEKGSEGMrGPSGLPGSPGPPGPPG 1201
Cdd:COG5164 99 TTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTTPPGD-GGSTTPPGPGGSTTPP 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564353025 1202 IQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHP----GLPGPKGDCGKPGPPGSSGRPGAEGEPG 1273
Cdd:COG5164 178 DDGGSTTPPNKGETGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPddrgGKTGPKDQRPKTNPIERRGPERPEAAAL 253
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1090-1134 |
2.11e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.86 E-value: 2.11e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 564353025 1090 GPPGLPGIKGERGYAGPAGEKGESGPPGSEGLPGPQGPAGPRGER 1134
Cdd:pfam01391 13 GPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
766-884 |
4.86e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 766 GKPGPKGEPGPEGVGRPGKPGQPGLPGVQGPPGLKGTQGEPGPPGTGAEGPQGEPGTPGLPGIQGPPGPRGPPGSTGEHG 845
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110
....*....|....*....|....*....|....*....
gi 564353025 846 AQGPPGPKGATGPMGPPGASISGPPGQKGSRGEKGEPGE 884
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
1051-1270 |
7.66e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 40.78 E-value: 7.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1051 GSPGLPGPVGLQGERGPTGLTGDKGEPGPPGQPGYPGAMGPPGlpgikgERGYAGPAGEKGESGPPGSEGLPGPQGPAGP 1130
Cdd:COG5164 7 GKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQ------NQGSTTPAGNTGGTRPAGNQGATGPAQNQGG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1131 RGERGPQGSSGEKGDQGFQGQPGFPgppgppgfpgkaGAPGPPGPQAEKGSEGMRGPSGLPGSPGPPGPPGIQGPAGLDG 1210
Cdd:COG5164 81 TTPAQNQGGTRPAGNTGGTTPAGDG------------GATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPG 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 1211 LDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGhPGLPGPKGDCGKPGPPGSSGRPGAEG 1270
Cdd:COG5164 149 STGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGG-STTPPNKGETGTDIPTGGTPRQGPDG 207
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
384-439 |
8.63e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.93 E-value: 8.63e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 564353025 384 GEKGESGDLGPSGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDGRPGEICVIGPKGQ 439
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
347-429 |
8.82e-03 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 40.66 E-value: 8.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564353025 347 DQGLTGPSGPKGEKGARGndcvrisPDGP-----LQCAEGPKGEKGESGDLGPSGLPGPTGQKGQKGEkgdgglKGLPGK 421
Cdd:NF038329 264 DRGEAGPDGPDGKDGERG-------PVGPagkdgQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGK------DGLPGK 330
|
....*...
gi 564353025 422 PGRDGRPG 429
Cdd:NF038329 331 DGKDGQPG 338
|
|
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