|
Name |
Accession |
Description |
Interval |
E-value |
| MEF2_binding |
pfam09047 |
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the ... |
2186-2220 |
1.07e-15 |
|
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription.
Pssm-ID: 370261 [Multi-domain] Cd Length: 35 Bit Score: 72.58 E-value: 1.07e-15
10 20 30
....*....|....*....|....*....|....*
gi 530419694 2186 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2220
Cdd:pfam09047 1 TLLSPKGSISEETKQKLKNAILSAQSAANVKKDSL 35
|
|
| MEF2_binding |
cd13839 |
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; ... |
2186-2220 |
6.15e-14 |
|
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; The myocyte enhancer factor-2 (MEF2) binding domain, as found in the calcineurin-binding protein cabin-1, adopts an amphipathic alpha-helical structure, which allows it to bind to a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription. Cabin-1 inhibits calcineurin-mediated signal transduction in T-cell receptor-mediated signalling pathways, by binding to the activated form of calcineurin. Cabin-1 acts as a co-repressor of MEF2, the mycocyte enhancer factor-2, which regulates transcription in a calcium-dependent manner and plays vital roles in T-cell development and function.
Pssm-ID: 260103 [Multi-domain] Cd Length: 35 Bit Score: 67.41 E-value: 6.15e-14
10 20 30
....*....|....*....|....*....|....*
gi 530419694 2186 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2220
Cdd:cd13839 1 TLLSPKGSISEETKQKLKNAILSSQSAANVKKDTL 35
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
30-205 |
2.77e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.18 E-value: 2.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEasllreavssgdekeglKHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-----------------LDPDD---AEALYNLGLAYLRLGRYEEA 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDC 189
Cdd:COG0457 62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
|
170
....*....|....*.
gi 530419694 190 RYSKGLVLKEKIFEEQ 205
Cdd:COG0457 142 DDADALYNLGIALEKL 157
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1944-2187 |
4.84e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 68.81 E-value: 4.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1944 AAAQRQASGDTPTTPKHPKDSRENFFP----VTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASAS--- 2016
Cdd:PHA03247 2752 GGPARPARPPTTAGPPAPAPPAAPAAGpprrLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLppp 2831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2017 TLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFP-PQEPRHSPQVKMA--PTSSPAEPHCWPAEaalgtgaE 2093
Cdd:PHA03247 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAkPAAPARPPVRRLArpAVSRSTESFALPPD-------Q 2904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2094 PTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP-LPNMPKLVIPSAAt 2172
Cdd:PHA03247 2905 PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgRVAVPRFRVPQPA- 2983
|
250
....*....|....*
gi 530419694 2173 kfPPEITVTPPTPTL 2187
Cdd:PHA03247 2984 --PSREAPASSTPPL 2996
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1944-2213 |
3.69e-10 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 64.98 E-value: 3.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1944 AAAQRQASGDTPTTPKHPKdSRENFFPVTVVPTAPDPV----PADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLD 2019
Cdd:pfam17823 120 SSSPSSAAQSLPAAIAALP-SEAFSAPRAAACRANASAapraAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTA 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2020 QSKDPGPPRPHRPEATPSMASLGPE-GEELARVaeGTSFPpqeprhspqvkMAPTSSPAEPHCWPAE-AALGTGAEPTCS 2097
Cdd:pfam17823 199 ASSAPATLTPARGISTAATATGHPAaGTALAAV--GNSSP-----------AAGTVTAAVGTVTPAAlATLAAAAGTVAS 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2098 QEGKLR---PEPRRDGEAQEAASETQPLS-SPPTAASSKAPSS--GSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPS-- 2169
Cdd:pfam17823 266 AAGTINmgdPHARRLSPAKHMPSDTMARNpAAPMGAQAQGPIIqvSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTnl 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 530419694 2170 -------AATKFPPEITVtPPTPTLLSPKGSISEETKQklKSAILSAQSAA 2213
Cdd:pfam17823 346 avvtttkAQAKEPSASPV-PVLHTSMIPEVEATSPTTQ--PSPLLPTQGAA 393
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
1922-2185 |
6.42e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 48.23 E-value: 6.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1922 IKQVDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPKHPKDSRenffpvtvvPTAPDPvpadsvqrpsdaHTKPRPALA 2001
Cdd:NF033839 248 IDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKK---------PSAPKP------------GMQPSPQPE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2002 AAttiitcPPSASASTLDQSKDPGPPRPhRPEATPSmaslgPEGEElarvaegTSFPPQEPRHSPQVKMAPTSSPAEPHC 2081
Cdd:NF033839 307 KK------EVKPEPETPKPEVKPQLEKP-KPEVKPQ-----PEKPK-------PEVKPQLETPKPEVKPQPEKPKPEVKP 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2082 WPAEAALGTGAEPTcsqegklRPEPRRDGEAQEAASETQPlsSPPTAASSKAPSSGSAQP---PEGHPGKPE--PSRAKS 2156
Cdd:NF033839 368 QPEKPKPEVKPQPE-------TPKPEVKPQPEKPKPEVKP--QPEKPKPEVKPQPEKPKPevkPQPEKPKPEvkPQPEKP 438
|
250 260 270
....*....|....*....|....*....|...
gi 530419694 2157 ----RPLPNMPKLVIPSAATKFPPEITVTPPTP 2185
Cdd:NF033839 439 kpevKPQPEKPKPEVKPQPETPKPEVKPQPEKP 471
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
2023-2163 |
1.70e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 46.30 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2023 DPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHC------WPAEAALGTGAEPTC 2096
Cdd:NF040712 189 DPDFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRrragveQPEDEPVGPGAAPAA 268
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530419694 2097 SQEGKLRPEPRRdgEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSR-PLPNMP 2163
Cdd:NF040712 269 EPDEATRDAGEP--PAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRRrRRASVP 334
|
|
| PBP1 |
COG5180 |
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
1943-2185 |
1.76e-03 |
|
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];
Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 43.51 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1943 GAAAQRQASGDTPTTPKH----PKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTiitcpPSASASTL 2018
Cdd:COG5180 152 AALLQRSDPILAKDPDGDsastLPPPAEKLDKVLTEPRDALKDSPEKLDRPKVEVKDEAQEEPPDLT-----GGADHPRP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2019 DQSKDPGPPRPHRPEATPSMASLGPEGEEL-------ARVAEGTSFPPQEPRHSPQ-------VKMAPTSSPAEPHCWPA 2084
Cdd:COG5180 227 EAASSPKVDPPSTSEARSRPATVDAQPEMRppadakeRRRAAIGDTPAAEPPGLPVleagsepQSDAPEAETARPIDVKG 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2085 EAALGTGAEPTCSQEGKLRPEPRRDGEAQEaasetQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKS------RP 2158
Cdd:COG5180 307 VASAPPATRPVRPPGGARDPGTPRPGQPTE-----RPAGVPEAASDAGQPPSAYPPAEEAVPGKPLEQGAPRpgssggDG 381
|
250 260
....*....|....*....|....*..
gi 530419694 2159 LPNMPKLVIPSAATKFPPeiTVTPPTP 2185
Cdd:COG5180 382 APFQPPNGAPQPGLGRRG--APGPPMG 406
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
36-119 |
1.87e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 36 AFALYHKALDLQKHDRFEESAKAYHELLEaslLREAVSSGDekeglkHPGLILkysTYKNLAQLAAQREDLETAMEFYLE 115
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALE---IARRLLGPD------HPLTAT---TLLNLGRLYLELGRYEEALELLER 70
|
....
gi 530419694 116 AVML 119
Cdd:pfam13424 71 ALAL 74
|
|
| sucB |
TIGR01347 |
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ... |
2045-2155 |
2.01e-03 |
|
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]
Pssm-ID: 273565 [Multi-domain] Cd Length: 403 Bit Score: 42.80 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2045 GEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHcwPAEAALGTGAEPTCSQEGKlrpEPRRDGEAQEAASETQPLSS 2124
Cdd:TIGR01347 68 GQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAA--PTAAANRPSLSPAARRLAK---EHGIDLSAVPGTGVTGRVTK 142
|
90 100 110
....*....|....*....|....*....|.
gi 530419694 2125 PPTAASSKAPSsgSAQPPEGHPGKPEPSRAK 2155
Cdd:TIGR01347 143 EDIIKKTEAPA--SAQPPAAAAAAAAPAAAT 171
|
|
| KLF9_13_N-like |
cd21975 |
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ... |
2030-2173 |
5.74e-03 |
|
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.
Pssm-ID: 409240 [Multi-domain] Cd Length: 163 Bit Score: 39.67 E-value: 5.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2030 HRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEGKLRPEPRRD 2109
Cdd:cd21975 19 HGVRPDPEGAGLAAGLDVRATREVAKGPGPPGPAWKPDGADSPGLVTAAPHLLAANVLAPLRGPSVEGSSLESGDADMGS 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530419694 2110 GEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGkPEPSRAKSRPLPNMPKLVIPSAATK 2173
Cdd:cd21975 99 DSDVAPASGAAASTSPESSSDAASSPSPLSLLHPGEAG-LEPERPRPRVRRGVRRRGVTPAAKR 161
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MEF2_binding |
pfam09047 |
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the ... |
2186-2220 |
1.07e-15 |
|
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription.
Pssm-ID: 370261 [Multi-domain] Cd Length: 35 Bit Score: 72.58 E-value: 1.07e-15
10 20 30
....*....|....*....|....*....|....*
gi 530419694 2186 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2220
Cdd:pfam09047 1 TLLSPKGSISEETKQKLKNAILSAQSAANVKKDSL 35
|
|
| MEF2_binding |
cd13839 |
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; ... |
2186-2220 |
6.15e-14 |
|
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; The myocyte enhancer factor-2 (MEF2) binding domain, as found in the calcineurin-binding protein cabin-1, adopts an amphipathic alpha-helical structure, which allows it to bind to a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription. Cabin-1 inhibits calcineurin-mediated signal transduction in T-cell receptor-mediated signalling pathways, by binding to the activated form of calcineurin. Cabin-1 acts as a co-repressor of MEF2, the mycocyte enhancer factor-2, which regulates transcription in a calcium-dependent manner and plays vital roles in T-cell development and function.
Pssm-ID: 260103 [Multi-domain] Cd Length: 35 Bit Score: 67.41 E-value: 6.15e-14
10 20 30
....*....|....*....|....*....|....*
gi 530419694 2186 TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL 2220
Cdd:cd13839 1 TLLSPKGSISEETKQKLKNAILSSQSAANVKKDTL 35
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
30-205 |
2.77e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 66.18 E-value: 2.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEasllreavssgdekeglKHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-----------------LDPDD---AEALYNLGLAYLRLGRYEEA 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDC 189
Cdd:COG0457 62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
|
170
....*....|....*.
gi 530419694 190 RYSKGLVLKEKIFEEQ 205
Cdd:COG0457 142 DDADALYNLGIALEKL 157
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1944-2187 |
4.84e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 68.81 E-value: 4.84e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1944 AAAQRQASGDTPTTPKHPKDSRENFFP----VTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASAS--- 2016
Cdd:PHA03247 2752 GGPARPARPPTTAGPPAPAPPAAPAAGpprrLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLppp 2831
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2017 TLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFP-PQEPRHSPQVKMA--PTSSPAEPHCWPAEaalgtgaE 2093
Cdd:PHA03247 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAkPAAPARPPVRRLArpAVSRSTESFALPPD-------Q 2904
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2094 PTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP-LPNMPKLVIPSAAt 2172
Cdd:PHA03247 2905 PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPgRVAVPRFRVPQPA- 2983
|
250
....*....|....*
gi 530419694 2173 kfPPEITVTPPTPTL 2187
Cdd:PHA03247 2984 --PSREAPASSTPPL 2996
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1942-2192 |
1.30e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 67.27 E-value: 1.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1942 LGAAAQRQASGDTPTTPKHPKDSRenffpVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQS 2021
Cdd:PHA03247 2723 PGPAAARQASPALPAAPAPPAVPA-----GPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2022 KdPGPPRPhrpeATPSMASLGPEGEELARVAEGTSFPPqePRHSPQVKMAPTSSPAEPHCwPAEAALGTGAEPTcsqegk 2101
Cdd:PHA03247 2798 L-PSPWDP----ADPPAAVLAPAAALPPAASPAGPLPP--PTSAQPTAPPPPPGPPPPSL-PLGGSVAPGGDVR------ 2863
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2102 lRPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSgSAQPPEGHPGKPEPSrAKSRPLPNMPKLVIPSAATKFPPEITVT 2181
Cdd:PHA03247 2864 -RRPPSRSPAAKPAAPARPPVRRLARPAVSRSTES-FALPPDQPERPPQPQ-APPPPQPQPQPPPPPQPQPPPPPPPRPQ 2940
|
250
....*....|.
gi 530419694 2182 PPTPTLLSPKG 2192
Cdd:PHA03247 2941 PPLAPTTDPAG 2951
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1955-2225 |
1.42e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 67.27 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1955 PTTPKHPKDSRENFFPVTVVPTAPDPVPADS-VQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHRPE 2033
Cdd:PHA03247 2629 PSPSPAANEPDPHPPPTVPPPERPRDDPAPGrVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTP 2708
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2034 ATPSMASLGPEGEELARVAEGTSFPPqeprhsPQVKMAPTSSPAEPHCWPAEAALGTGAEPTcsqeGKLRPEPRRDGEAQ 2113
Cdd:PHA03247 2709 EPAPHALVSATPLPPGPAAARQASPA------LPAAPAPPAVPAGPATPGGPARPARPPTTA----GPPAPAPPAAPAAG 2778
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2114 EAASETQPLSSPPTAASSKAPS-SGSAQPPEGHPGKPEPSRAKSRPLPNMPKlviPSAATKFPPEITVTPPTPTL----- 2187
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSpWDPADPPAAVLAPAAALPPAASPAGPLPP---PTSAQPTAPPPPPGPPPPSLplggs 2855
|
250 260 270
....*....|....*....|....*....|....*...
gi 530419694 2188 LSPKGSISEETKQKLKSAILSAQSAANVRkeSLCQPAL 2225
Cdd:PHA03247 2856 VAPGGDVRRRPPSRSPAAKPAAPARPPVR--RLARPAV 2891
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1950-2216 |
2.03e-10 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 66.73 E-value: 2.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1950 ASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATT--IITCPPSASA----STLDQSKD 2023
Cdd:PHA03307 124 ASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPeeTARAPSSPPAepppSTPPAAAS 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2024 PGPPRPHRPEATPSM--ASLGPEGEELARVAEGTSFPPQEPRHSP--QVKMAPTSSPAEPHC--WPAEAALGTGAEPTCS 2097
Cdd:PHA03307 204 PRPPRRSSPISASASspAPAPGRSAADDAGASSSDSSSSESSGCGwgPENECPLPRPAPITLptRIWEASGWNGPSSRPG 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2098 QEGKLRPEPRRDGEAQEAASETQPLSSPPT----------AASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNmpklvi 2167
Cdd:PHA03307 284 PASSSSSPRERSPSPSPSSPGSGPAPSSPRasssssssreSSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPP------ 357
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 530419694 2168 PSAATKFPPE-ITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVR 2216
Cdd:PHA03307 358 PPADPSSPRKrPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
1944-2213 |
3.69e-10 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 64.98 E-value: 3.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1944 AAAQRQASGDTPTTPKHPKdSRENFFPVTVVPTAPDPV----PADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLD 2019
Cdd:pfam17823 120 SSSPSSAAQSLPAAIAALP-SEAFSAPRAAACRANASAapraAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTA 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2020 QSKDPGPPRPHRPEATPSMASLGPE-GEELARVaeGTSFPpqeprhspqvkMAPTSSPAEPHCWPAE-AALGTGAEPTCS 2097
Cdd:pfam17823 199 ASSAPATLTPARGISTAATATGHPAaGTALAAV--GNSSP-----------AAGTVTAAVGTVTPAAlATLAAAAGTVAS 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2098 QEGKLR---PEPRRDGEAQEAASETQPLS-SPPTAASSKAPSS--GSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPS-- 2169
Cdd:pfam17823 266 AAGTINmgdPHARRLSPAKHMPSDTMARNpAAPMGAQAQGPIIqvSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTnl 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 530419694 2170 -------AATKFPPEITVtPPTPTLLSPKGSISEETKQklKSAILSAQSAA 2213
Cdd:pfam17823 346 avvtttkAQAKEPSASPV-PVLHTSMIPEVEATSPTTQ--PSPLLPTQGAA 393
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
34-199 |
5.26e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 62.33 E-value: 5.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 34 AEAFALYHKALDLQkhdrfEESAKAYHELleASLLREAvssGDEKEGLKH--------PGLIlkySTYKNLAQLAAQRED 105
Cdd:COG0457 25 EEAIEDYEKALELD-----PDDAEALYNL--GLAYLRL---GRYEEALADyeqaleldPDDA---EALNNLGLALQALGR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 106 LETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKAL 185
Cdd:COG0457 92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
170
....*....|....
gi 530419694 186 EKDCRYSKGLVLKE 199
Cdd:COG0457 172 AAALAALLAAALGE 185
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
30-188 |
2.29e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 62.70 E-value: 2.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEAsllreavssgdekeglkHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALAL-----------------NPDN---AEALFNLGNLLLALGRLEEA 131
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530419694 110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1951-2224 |
6.57e-09 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 61.88 E-value: 6.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1951 SGDTPttPKHPKDSRENFFPVTVVPTAPDPVPADSVQRpSDAHTKPRPALAAATTIITCPPSASASTLDQSkdPGPPRPH 2030
Cdd:PHA03247 2548 AGDPP--PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVT-SRARRPDAPPQSARPRAPVDDRGDPRGPAPPS--PLPPDTH 2622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2031 RPEATPSMASlgPEGEELARVAEGTSFPPQEPRHSPQVK-----------------MAPTSSPAEPHCWPAEAALGTGAE 2093
Cdd:PHA03247 2623 APDPPPPSPS--PAANEPDPHPPPTVPPPERPRDDPAPGrvsrprrarrlgraaqaSSPPQRPRRRAARPTVGSLTSLAD 2700
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2094 PTcsqegklrPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKP----EPSRAKSRPLPNMPklviPS 2169
Cdd:PHA03247 2701 PP--------PPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPatpgGPARPARPPTTAGP----PA 2768
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 530419694 2170 AAtkfPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPA 2224
Cdd:PHA03247 2769 PA---PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
30-205 |
9.03e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.97 E-value: 9.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEAS---------LLREAVSSGDEKEGLKHPGLILKYS-----TYKN 95
Cdd:COG2956 70 ERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDpddaealrlLAEIYEQEGDWEKAIEVLERLLKLGpenahAYCE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 96 LAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYT 175
Cdd:COG2956 150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229
|
170 180 190
....*....|....*....|....*....|
gi 530419694 176 TCLYFICKALEKDCRYSKGLVLKEKIFEEQ 205
Cdd:COG2956 230 EALELLRKALELDPSDDLLLALADLLERKE 259
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
33-188 |
5.45e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.66 E-value: 5.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 33 EAEAFALYHKALDLQKHDRFEESAKAYHELLEASllreavssGDEKEGlkhpglilkystYKNLAQLAAQREDLETAMEF 112
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELD--------PDNPEA------------FALLGEILLQLGDLDEAIVL 60
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530419694 113 YLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG4783 61 LHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1951-2213 |
1.24e-07 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 57.23 E-value: 1.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1951 SGDTPTTPK-HPKDS-RENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPP- 2027
Cdd:pfam05109 483 SGASPVTPSpSPRDNgTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAv 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2028 RPHRPEAT-PSMASLGPEGEELARVAEGTSfpPQEPRHSPQVK-----MAPTSSPAEPHCWP--AEAALGTGAEPTCSQE 2099
Cdd:pfam05109 563 TTPTPNATiPTLGKTSPTSAVTTPTPNATS--PTVGETSPQANttnhtLGGTSSTPVVTSPPknATSAVTTGQHNITSSS 640
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2100 G---KLRPEPRRDG---EAQEAASETQPL--SSPPTAA---SSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMpklviP 2168
Cdd:pfam05109 641 TssmSLRPSSISETlspSTSDNSTSHMPLltSAHPTGGeniTQVTPASTSTHHVSTSSPAPRPGTTSQASGPGN-----S 715
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 530419694 2169 SAATKfPPEITVTPPTPtllsPKGSISEETKQKLKSAILSAQSAA 2213
Cdd:pfam05109 716 STSTK-PGEVNVTKGTP----PKNATSPQAPSGQKTAVPTVTSTG 755
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1975-2214 |
2.59e-07 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 56.01 E-value: 2.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1975 PTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTldqskdpgPPRPHRPEATPSMASLGPEGEELARVAEG 2054
Cdd:PRK07003 374 ARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAA--------AAAATRAEAPPAAPAPPATADRGDDAADG 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2055 TSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTG-AEPTCSQEgklrPEPRRDGEAQEAASETQPLSSPPTAASSKA 2133
Cdd:PRK07003 446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASdAPPDAAFE----PAPRAAAPSAATPAAVPDARAPAAASREDA 521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2134 PSSGSAQPPEGHPGKP----EPSRA--------------------KSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLS 2189
Cdd:PRK07003 522 PAAAAPPAPEARPPTPaaaaPAARAggaaaaldvlrnagmrvssdRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRA 601
|
250 260
....*....|....*....|....*
gi 530419694 2190 PKGSiseeTKQKLKSAILSAQSAAN 2214
Cdd:PRK07003 602 RAAT----GDAPPNGAARAEQAAES 622
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1953-2226 |
1.00e-06 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 54.30 E-value: 1.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1953 DTPTTPKHP---KDSRENFFPVTVVPTAP---DPVPADSVQRPSdAHTKPRPALAAATTIITCPPSASAstldQSKDPGP 2026
Cdd:PHA03378 607 EPPTTQSHIpetSAPRQWPMPLRPIPMRPlrmQPITFNVLVFPT-PHQPPQVEITPYKPTWTQIGHIPY----QPSPTGA 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2027 PRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPaephcwpaeaalgtgaeptcsqeGKLRPep 2106
Cdd:PHA03378 682 NTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAP-----------------------GRARP-- 736
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2107 rrdgeAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSrpLPNMPKLVIPSAATKFPPeiTVTPPTPT 2186
Cdd:PHA03378 737 -----PAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQ--APPAPQQRPRGAPTPQPP--PQAGPTSM 807
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 530419694 2187 LLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQPALE 2226
Cdd:PHA03378 808 QLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALE 847
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1950-2200 |
1.23e-06 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 53.92 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1950 ASGDTPTTP--KHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIitcPPSASAstldqskdPGPP 2027
Cdd:PHA03378 646 LVFPTPHQPpqVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPM---RPPAAP--------PGRA 714
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2028 RPhrPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAephcwPAEAALGTGAEPTCSQEGKLRPEPR 2107
Cdd:PHA03378 715 QR--PAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG-----RARPPAAAPGAPTPQPPPQAPPAPQ 787
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2108 RdgEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRplpNMPKLVIPSAATKFPPEItvtpPTPtl 2187
Cdd:PHA03378 788 Q--RPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKR---GRPSLKKPAALERQAAAG----PTP-- 856
|
250
....*....|...
gi 530419694 2188 lSPKGSISEETKQ 2200
Cdd:PHA03378 857 -SPGSGTSDKIVQ 868
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
1972-2191 |
1.25e-06 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 53.68 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1972 TVVPTAPDPVPADSVQRPSDAHTKPRPAlaaattiitcpPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARV 2051
Cdd:PRK14086 91 SAGEPAPPPPHARRTSEPELPRPGRRPY-----------EGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWP 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2052 AEGTSFPPQEPRHSPqvkmaptsSPAEPHCWPAEAAlgTGAEPTCSQEGKLRPE---PRRDGEAQEaasetqPLSSPPTA 2128
Cdd:PRK14086 160 RAADDYGWQQQRLGF--------PPRAPYASPASYA--PEQERDREPYDAGRPEydqRRRDYDHPR------PDWDRPRR 223
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530419694 2129 ASSKAP--SSGSAQPPEGHPGKPEPSRAKSRPlpnmpklVIPSAATKFP--PEITVTPPTPTL-LSPK 2191
Cdd:PRK14086 224 DRTDRPepPPGAGHVHRGGPGPPERDDAPVVP-------IRPSAPGPLAaqPAPAPGPGEPTArLNPK 284
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1949-2175 |
1.39e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 53.73 E-value: 1.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1949 QASGDT-PTTPKHPKDSRENffPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASA-STLDQSKDPGP 2026
Cdd:PRK12323 367 QSGGGAgPATAAAAPVAQPA--PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlAAARQASARGP 444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2027 PRPHRPEATPSMAslgPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEGKLRPEP 2106
Cdd:PRK12323 445 GGAPAPAPAPAAA---PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW 521
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 530419694 2107 RRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRpLPNMPKLVIPSAATKFP 2175
Cdd:PRK12323 522 VAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG-LPDMFDGDWPALAARLP 589
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1938-2163 |
1.69e-06 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.45 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1938 CQVHLGAAAQRQASGDTPTTPKHPKDSRENffpvTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASAST 2017
Cdd:PRK07764 582 WQVEAVVGPAPGAAGGEGPPAPASSGPPEE----AARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2018 LDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHcWPAEAALGTGAEPTCS 2097
Cdd:PRK07764 658 AVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ-PPQAAQGASAPSPAAD 736
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530419694 2098 QEGKLRPEPRRDGEAQEAasetqPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMP 2163
Cdd:PRK07764 737 DPVPLPPEPDDPPDPAGA-----PAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1976-2183 |
2.53e-06 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 52.96 E-value: 2.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1976 TAPDPVPADSVQRPSDAHTKPRPALAAATTiitcPPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGT 2055
Cdd:PRK12323 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAA----PPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2056 SFPPQEPRHSPQVKMAPTSSPAEPhcwpaEAALGTGAEPTCSQEGKLRPEPRRDGEAQEAASEtqpLSSPPTAASSKAPs 2135
Cdd:PRK12323 448 PAPAPAPAAAPAAAARPAAAGPRP-----VAAAAAAAPARAAPAAAPAPADDDPPPWEELPPE---FASPAPAQPDAAP- 518
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 530419694 2136 SGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPP 2183
Cdd:PRK12323 519 AGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
38-188 |
2.57e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 2.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 38 ALYHKALDLQKHDRFEESAKAYHELLEASLLREAVSSGDEKEGLKHPGLILKYSTYKNLAQLAAQREDLETAMEFYLEAV 117
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530419694 118 MLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1943-2163 |
3.13e-06 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 52.87 E-value: 3.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1943 GAAAQRQASGDTPTTPKHPKDSREnfFPVTVVPTAPDPVPADSVQRPSDahtkprPALAAATtiitcPPSASASTLDQSK 2022
Cdd:PHA03307 76 GTEAPANESRSTPTWSLSTLAPAS--PAREGSPTPPGPSSPDPPPPTPP------PASPPPS-----PAPDLSEMLRPVG 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2023 DPGPPRPHRPEATPSMASLGPEGEE-------LARVAEGTSFPPQEPRHSPQVKMAP---TSSPAEPHCWPAEAALGTGA 2092
Cdd:PHA03307 143 SPGPPPAASPPAAGASPAAVASDAAssrqaalPLSSPEETARAPSSPPAEPPPSTPPaaaSPRPPRRSSPISASASSPAP 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2093 EPTCSQEGKLR--------PEPRRDGEAQE-------AASETQPLS----SPPTAASSKAPSSGSAQPPEGHPGKPEPSR 2153
Cdd:PHA03307 223 APGRSAADDAGasssdsssSESSGCGWGPEnecplprPAPITLPTRiweaSGWNGPSSRPGPASSSSSPRERSPSPSPSS 302
|
250
....*....|
gi 530419694 2154 AKSRPLPNMP 2163
Cdd:PHA03307 303 PGSGPAPSSP 312
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
99-188 |
4.20e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.09 E-value: 4.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 99 LAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARhAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCL 178
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|
gi 530419694 179 YFICKALEKD 188
Cdd:COG3063 80 AYLERALELD 89
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
1986-2191 |
4.56e-06 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 52.08 E-value: 4.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1986 VQRPSDAHTKPRPALAAATTIITCPPSASASTLD-QSKDPGPPRPHRPEATPSMASLGPEGEELarvaegtsFPPQEPrh 2064
Cdd:pfam03154 174 LQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPpQGSPATSQPPNQTQSTAAPHTLIQQTPTL--------HPQRLP-- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2065 SPQVKMAPTSSPAEPHCWPAEAAlgtgAEPTCSQEGKLRPEPRRDGEAQ-EAASETQPLSSPPTAASSKAPSSGSAQ--- 2140
Cdd:pfam03154 244 SPHPPLQPMTQPPPPSQVSPQPL----PQPSLHGQMPPMPHSLQTGPSHmQHPVPPQPFPLTPQSSQSQVPPGPSPAapg 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2141 ---------PPEGHPGKPEPSRakSRPLPNMPkLVIPSAAtkfPPEITVTPPTPTLLSPK 2191
Cdd:pfam03154 320 qsqqrihtpPSQSQLQSQQPPR--EQPLPPAP-LSMPHIK---PPPTTPIPQLPNPQSHK 373
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
1943-2205 |
6.34e-06 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 51.69 E-value: 6.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1943 GAAAQRQASGDTPTTPKHPKDSRENffpvtvvPTAPDPVPADSVQRPSdahTKPRPALAAATTIiTCPPSASASTLDQSK 2022
Cdd:pfam03154 319 GQSQQRIHTPPSQSQLQSQQPPREQ-------PLPPAPLSMPHIKPPP---TTPIPQLPNPQSH-KHPPHLSGPSPFQMN 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2023 DPGPPRP-----------HRPEATPSMASLGPEGEELARvaegtsfPPQEPRHSPQVKMAPTSSPAEPHcwpaeaalGTG 2091
Cdd:pfam03154 388 SNLPPPPalkplsslsthHPPSAHPPPLQLMPQSQQLPP-------PPAQPPVLTQSQSLPPPAASHPP--------TSG 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2092 AEPTCSQEgklrPEPRRDGEAQEAASETQPlSSPPTAASSKAPSSgsaQPPEghpgkpEPSRAKSRPLPNMPKLVIPSAA 2171
Cdd:pfam03154 453 LHQVPSQS----PFPQHPFVPGGPPPITPP-SGPPTSTSSAMPGI---QPPS------SASVSSSGPVPAAVSCPLPPVQ 518
|
250 260 270
....*....|....*....|....*....|....*....
gi 530419694 2172 TKFPP-----EITVTPPTPTLLSPKGSISEETKQKLKSA 2205
Cdd:pfam03154 519 IKEEAldeaeEPESPPPPPRSPSPEPTVVNTPSHASQSA 557
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
1949-2194 |
9.82e-06 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 51.21 E-value: 9.82e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1949 QASGDTPTTPKHPKDSrenffPVTVVP----TAPDPVPADSVQRPSDAHTKPRPaLAAATTIITCP-------PSASAST 2017
Cdd:PHA03379 407 KASEPTYGTPRPPVEK-----PRPEVPqsleTATSHGSAQVPEPPPVHDLEPGP-LHDQHSMAPCPvaqlppgPLQDLEP 480
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2018 LDQskDPGPPRPHRPEATPSMASLGP---EGEELARVAEGTSFPPQEPRHSP-QVKMAPTSSPAEPHC-WPAEAALGTGA 2092
Cdd:PHA03379 481 GDQ--LPGVVQDGRPACAPVPAPAGPivrPWEASLSQVPGVAFAPVMPQPMPvEPVPVPTVALERPVCpAPPLIAMQGPG 558
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2093 EPTCSQEGKLR---------------PEPRRDGEAQ---EAASETQPLSSPP---TAASSKAPSSGSAQPPEG-HPGKPE 2150
Cdd:PHA03379 559 ETSGIVRVRERwrpapwtpnpprspsQMSVRDRLARlraEAQPYQASVEVQPpqlTQVSPQQPMEYPLEPEQQmFPGSPF 638
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 530419694 2151 PSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSI 2194
Cdd:PHA03379 639 SQVADVMRAGGVPAMQPQYFDLPLQQPISQGAPLAPLRASMGPV 682
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
29-174 |
1.40e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 48.37 E-value: 1.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 29 KEAQEAEAFALYHKALDLQKHDRF-----EESAKAYHELLEASLLREAVSSGDEK--EGLKHPGLIlkySTYKNLAQLAA 101
Cdd:COG4785 8 LLLALALAAAAASKAAILLAALLFaavlaLAIALADLALALAAAALAAAALAAERidRALALPDLA---QLYYERGVAYD 84
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530419694 102 QREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG4785 85 SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRY 157
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1944-2197 |
1.99e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 50.17 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1944 AAAQRQASGDTPTT-PKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPalaaattiitcPPSASASTLDQSK 2022
Cdd:PHA03307 60 AACDRFEPPTGPPPgPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPD-----------PPPPTPPPASPPP 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2023 DPGPPRPH-----RPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAAlGTGAEPTCs 2097
Cdd:PHA03307 129 SPAPDLSEmlrpvGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP-PAAASPRP- 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2098 qegklrpePRRDGEAQEAASETQPlSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPpe 2177
Cdd:PHA03307 207 --------PRRSSPISASASSPAP-APGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGW-- 275
|
250 260
....*....|....*....|
gi 530419694 2178 iTVTPPTPTLLSPKGSISEE 2197
Cdd:PHA03307 276 -NGPSSRPGPASSSSSPRER 294
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
95-174 |
2.10e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.15 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 95 NLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG4235 22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1971-2187 |
2.93e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.60 E-value: 2.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1971 VTVVPtAPDPVPADSVQRPSDAHTKPRPALAAATtiitcPPSASASTlDQSKDPGPPRPHRPEATPSMASLGPEGEELAR 2050
Cdd:PRK07764 584 VEAVV-GPAPGAAGGEGPPAPASSGPPEEAARPA-----APAAPAAP-AAPAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2051 VAEGTSFPPQEPRHSPQVKMAPTSSPAEPhcwpAEAALGTGAEPTCSQEGKLRPEPRRDGEAQEAASETQplsSPPTAAS 2130
Cdd:PRK07764 657 VAVPDASDGGDGWPAKAGGAAPAAPPPAP----APAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPP---QAAQGAS 729
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 530419694 2131 SKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTL 2187
Cdd:PRK07764 730 APSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMA 786
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1944-2116 |
3.44e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.21 E-value: 3.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1944 AAAQRQASGDTPTTPKHPKDSRENFFPVTVVPTAPDPVPaDSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKD 2023
Cdd:PRK07764 622 AAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP-DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2024 PGPPRPHRP------EATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCS 2097
Cdd:PRK07764 701 PAPAPAATPpagqadDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780
|
170 180
....*....|....*....|..
gi 530419694 2098 QEGKLRPEPRR---DGEAQEAA 2116
Cdd:PRK07764 781 EEEEMAEDDAPsmdDEDRRDAE 802
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1944-2163 |
4.00e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 49.08 E-value: 4.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1944 AAAQRQASGDTPTTPKHPKdsrenffPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKD 2023
Cdd:PRK07003 395 AVPAVTAVTGAAGAALAPK-------AAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERD 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2024 PGPPRPHRPEATPSMASLGPEGEELA--------------RVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHC-WPAEAAL 2088
Cdd:PRK07003 468 AQPPADSGSASAPASDAPPDAAFEPApraaapsaatpaavPDARAPAAASREDAPAAAAPPAPEARPPTPAAaAPAARAG 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2089 GTGAEPTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSK---------APSSGSAQPPEghPGKPEPSRAKSR-- 2157
Cdd:PRK07003 548 GAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRvavqvptprARAATGDAPPN--GAARAEQAAESRga 625
|
....*...
gi 530419694 2158 --PLPNMP 2163
Cdd:PRK07003 626 ppPWEDIP 633
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1-155 |
4.48e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 4.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1 MIRIAALNASSTIEDDHEGSFKSHKTQTKEAQEAEAFALYHKALDLQKhdRFEESAKAYHELLEAsllreavssgdekeg 80
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG--DFEESLALLEQALQL--------------- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530419694 81 lkHPGlilKYSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNP 155
Cdd:COG5010 84 --DPN---NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PHA02682 |
PHA02682 |
ORF080 virion core protein; Provisional |
1970-2076 |
4.96e-05 |
|
ORF080 virion core protein; Provisional
Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 47.55 E-value: 4.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1970 PVTVVPTAPDP-VPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHR--PEAT------PSMAS 2040
Cdd:PHA02682 76 PSGQSPLAPSPaCAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPacPPSTrqcppaPPLPT 155
|
90 100 110
....*....|....*....|....*....|....*..
gi 530419694 2041 LGPEGEELARVAEGTSFPPQEPRHS-PQVKMAPTSSP 2076
Cdd:PHA02682 156 PKPAPAAKPIFLHNQLPPPDYPAAScPTIETAPAASP 192
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1970-2158 |
5.48e-05 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 48.63 E-value: 5.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1970 PVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAA-----TTIITCPPSASASTLDQSKDPGPpRPHRPEATPSMASLGPE 2044
Cdd:PHA03307 25 PATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGaaacdRFEPPTGPPPGPGTEAPANESRS-TPTWSLSTLAPASPARE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2045 GEELARVAEGTSFPPQ-EPRHSPqvkmAPTSSPAEPHCWPAEAALGTGAEPtcsqegklRPEPRRDGEAQEAASETQPLS 2123
Cdd:PHA03307 104 GSPTPPGPSSPDPPPPtPPPASP----PPSPAPDLSEMLRPVGSPGPPPAA--------SPPAAGASPAAVASDAASSRQ 171
|
170 180 190
....*....|....*....|....*....|....*
gi 530419694 2124 SPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRP 2158
Cdd:PHA03307 172 AALPLSSPEETARAPSSPPAEPPPSTPPAAASPRP 206
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
2010-2223 |
5.92e-05 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 48.38 E-value: 5.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2010 PPSASASTldQSKDPGPPRPHRPEATPSMASLGPEGEELAR---VAEGTSF----PPQEPRHSPQVKMAPTSSPAEPHCW 2082
Cdd:PLN03209 329 PPKESDAA--DGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVprpLSPYTAYedlkPPTSPIPTPPSSSPASSKSVDAVAK 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2083 PAEAALGTGAEPTCS-QEGKLRPEPR---RDGEAQEAASETQPLSSP-PTAASSKAPSSGSAQPPEGHPGKPEPSRAKSR 2157
Cdd:PLN03209 407 PAEPDVVPSPGSASNvPEVEPAQVEAkktRPLSPYARYEDLKPPTSPsPTAPTGVSPSVSSTSSVPAVPDTAPATAATDA 486
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530419694 2158 PLPNMPKlviPSAATKFPPEITVTPPT-PTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLCQP 2223
Cdd:PLN03209 487 AAPPPAN---MRPLSPYAVYDDLKPPTsPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQP 550
|
|
| PspC_subgroup_2 |
NF033839 |
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ... |
1922-2185 |
6.42e-05 |
|
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.
Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 48.23 E-value: 6.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1922 IKQVDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPKHPKDSRenffpvtvvPTAPDPvpadsvqrpsdaHTKPRPALA 2001
Cdd:NF033839 248 IDNVNTKVEIENTVHKIFADMDAVVTKFKKGLTQDTPKEPGNKK---------PSAPKP------------GMQPSPQPE 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2002 AAttiitcPPSASASTLDQSKDPGPPRPhRPEATPSmaslgPEGEElarvaegTSFPPQEPRHSPQVKMAPTSSPAEPHC 2081
Cdd:NF033839 307 KK------EVKPEPETPKPEVKPQLEKP-KPEVKPQ-----PEKPK-------PEVKPQLETPKPEVKPQPEKPKPEVKP 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2082 WPAEAALGTGAEPTcsqegklRPEPRRDGEAQEAASETQPlsSPPTAASSKAPSSGSAQP---PEGHPGKPE--PSRAKS 2156
Cdd:NF033839 368 QPEKPKPEVKPQPE-------TPKPEVKPQPEKPKPEVKP--QPEKPKPEVKPQPEKPKPevkPQPEKPKPEvkPQPEKP 438
|
250 260 270
....*....|....*....|....*....|...
gi 530419694 2157 ----RPLPNMPKLVIPSAATKFPPEITVTPPTP 2185
Cdd:NF033839 439 kpevKPQPEKPKPEVKPQPETPKPEVKPQPEKP 471
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1955-2226 |
8.26e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 48.14 E-value: 8.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1955 PTTPKHPKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAAttiitcPPSASASTLDQSKDPGPPRPHRPEA 2034
Cdd:PHA03378 676 PSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRA------RPPAAAPGRARPPAAAPGRARPPAA 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2035 TPSMA---SLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPA---EPHCWPAEAALGTGAEPTCSQEGKLRPEPRR 2108
Cdd:PHA03378 750 APGRArppAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTpqpPPQAGPTSMQLMPRAAPGQQGPTKQILRQLL 829
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2109 DGEAQEA-ASETQPLSSPPTAASSKAPSSGSA------QPPEGHPGKPEPSRAKSRplPNMPKLVIPSAATKFPPEIT-- 2179
Cdd:PHA03378 830 TGGVKRGrPSLKKPAALERQAAAGPTPSPGSGtsdkivQAPVFYPPVLQPIQVMRQ--LGSVRAAAASTVTQAPTEYTge 907
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 530419694 2180 ---VTPPTPTLLSPKGSISEETKQKLKSAILSAQSAANVRKESLC---QPALE 2226
Cdd:PHA03378 908 rrgVGPMHPTDIPPSKRAKTDAYVESQPPHGGQSHSFSVIWENVSqgqQQTLE 960
|
|
| SepH |
NF040712 |
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ... |
2023-2163 |
1.70e-04 |
|
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.
Pssm-ID: 468676 [Multi-domain] Cd Length: 346 Bit Score: 46.30 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2023 DPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHC------WPAEAALGTGAEPTC 2096
Cdd:NF040712 189 DPDFGRPLRPLATVPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRrragveQPEDEPVGPGAAPAA 268
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530419694 2097 SQEGKLRPEPRRdgEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSR-PLPNMP 2163
Cdd:NF040712 269 EPDEATRDAGEP--PAPGAAETPEAAEPPAPAPAAPAAPAAPEAEEPARPEPPPAPKPKRRrRRASVP 334
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
1923-2160 |
2.44e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.62 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1923 KQVDEEAALEQAVKfcqvhlGAAAQRQA---SGDTPTTPKHPK-DSRENFFPVT--VVPTAPDPVPADSVQRPSDAHTkP 1996
Cdd:PRK10263 270 KRMDDDEEITYTAR------GVAADPDDvlfSGNRATQPEYDEyDPLLNGAPITepVAVAAAATTATQSWAAPVEPVT-Q 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1997 RPALAAATTIITCPpsasasTLDQSKDPGPprpHRPEatPSMASlGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSP 2076
Cdd:PRK10263 343 TPPVASVDVPPAQP------TVAWQPVPGP---QTGE--PVIAP-APEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAP 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2077 AEPHCWPAEAALGTGAEPTCSQEGKLRPEPRRDGEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKS 2156
Cdd:PRK10263 411 AAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVV 490
|
....
gi 530419694 2157 RPLP 2160
Cdd:PRK10263 491 EPEP 494
|
|
| PHA03291 |
PHA03291 |
envelope glycoprotein I; Provisional |
1968-2191 |
3.00e-04 |
|
envelope glycoprotein I; Provisional
Pssm-ID: 223033 [Multi-domain] Cd Length: 401 Bit Score: 45.72 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1968 FFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTiiTCPPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEgee 2047
Cdd:PHA03291 203 FVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPST--TIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPE--- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2048 larvaegtsfppqEPRHspQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEGKLRPEPRRdgeaqeaASETQPLSSPPT 2127
Cdd:PHA03291 278 -------------ASRY--ELTVTQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRPAR-------IYRPPSPVAPSI 335
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530419694 2128 AASSKAPSSGSAQPPEGHPGKPePSRAKSRPLPN-MPKLVIPSAATKFP--PEITVTPPTPTLLSPK 2191
Cdd:PHA03291 336 SAVNEAALARLGDELKRHPPES-PRRSKRRSSQTmVPSLTAISEESEAPavVELSRSPRRPGGPTAR 401
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
2033-2190 |
3.17e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.02 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2033 EATPSMASLGPEGEELARVAEGTSFPPqeprhspqvkmAPTSSPAEPHCWPAEAAlgtGAEPTCSQEGKLRPEPRRDGEA 2112
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAP-----------APAAPPAAPAAAPAAAA---AARAVAAAPARRSPAPEALAAA 436
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530419694 2113 QEAASETQPLSSPPTAASSKAPSsgSAQPPEGHPGKPEPSRAKSRPLPNMPKLViPSAATKFPPEITVTPPTPTLLSP 2190
Cdd:PRK12323 437 RQASARGPGGAPAPAPAPAAAPA--AAARPAAAGPRPVAAAAAAAPARAAPAAA-PAPADDDPPPWEELPPEFASPAP 511
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1988-2214 |
4.02e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 45.64 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1988 RPSDAHTKPRPALAAATTIITCPPSASASTldqskdPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEP----R 2063
Cdd:PRK12323 364 RPGQSGGGAGPATAAAAPVAQPAPAAAAPA------AAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAlaaaR 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2064 HSPQVKMAPTSSPAephcwPAEAALGTGAEPTCSQEgkLRPEPRrdgeaqeAASETQPLSSPPTAAsskAPSSGSAQPPE 2143
Cdd:PRK12323 438 QASARGPGGAPAPA-----PAPAAAPAAAARPAAAG--PRPVAA-------AAAAAPARAAPAAAP---APADDDPPPWE 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2144 GHPGK-PEPSRAKSRPLPNM--------PKLVIPSAATKFPPEITVTPPTPTLLSPKGSISEETKQKLKSAILSAQSAAN 2214
Cdd:PRK12323 501 ELPPEfASPAPAQPDAAPAGwvaesipdPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
|
|
| PHA03381 |
PHA03381 |
tegument protein VP22; Provisional |
1961-2101 |
5.20e-04 |
|
tegument protein VP22; Provisional
Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 44.23 E-value: 5.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1961 PKDSRENFFPVTVVPTAPDPVPAD-SVQRPSDAHTKPRPALAAAT----------TIITCPPSASASTLDQSKDPGPPRP 2029
Cdd:PHA03381 11 PHGTDEVEADVYYDFISPDASPARvSFEEPADRARRGAGQARGRSqaerrfhhydEARADYPYYTGSSSEDERPADPRPS 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530419694 2030 HRPEATPSM----ASLGPEGEELARVAEGTSFPPqEPRHSPQVKMAPTSSPAEPHCwPAEAALGTGAEPTCSQEGK 2101
Cdd:PHA03381 91 RRPHAQPEAsgpgPARGARGPAGSRGRGRRAESP-SPRDPPNPKGASAPRGRKSAC-ADSAALLDAPAPAAPKRQK 164
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
92-158 |
5.98e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 5.98e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530419694 92 TYKNLAQLAAQREDLETAMEFyLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHW 158
Cdd:COG3063 28 ALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1979-2190 |
8.26e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.93 E-value: 8.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1979 DPVPADSV-QRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHRPEATPSMASLGP-------------- 2043
Cdd:PHA03247 2452 DPFFARTIlGAPFSLSLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPailpdepvgepvhp 2531
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2044 ------EG-EELARVAEGTSFPPQEPRHSPQV--KMAPTSSPAePHcwPAEAALGTGAE----PTCSQEGKLRPEPRRDG 2110
Cdd:PHA03247 2532 rmltwiRGlEELASDDAGDPPPPLPPAAPPAApdRSVPPPRPA-PR--PSEPAVTSRARrpdaPPQSARPRAPVDDRGDP 2608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2111 EAQEAASETQPLSSPPTAASSkAPSSGSAQPPEGHP-GKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTP--PTPTL 2187
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPP-SPSPAANEPDPHPPpTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPqrPRRRA 2687
|
...
gi 530419694 2188 LSP 2190
Cdd:PHA03247 2688 ARP 2690
|
|
| PHA03325 |
PHA03325 |
nuclear-egress-membrane-like protein; Provisional |
2013-2182 |
9.23e-04 |
|
nuclear-egress-membrane-like protein; Provisional
Pssm-ID: 223044 Cd Length: 418 Bit Score: 44.10 E-value: 9.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2013 ASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQ-----VKMAPTSSPAEPhcwPAEAA 2087
Cdd:PHA03325 259 SSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPppvrrPRVKHPEAGKEE---PDGAR 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2088 LGTGAEPTCSQEGKLRPeprrdgeAQEAASETQPLSSPPTAASSKApSSGSAQPPEGHPGKPEPSRAKSRPLPnmpklvi 2167
Cdd:PHA03325 336 NAEAKEPAQPATSTSSK-------GSSSAQNKDSGSTGPGSSLAAA-SSFLEDDDFGSPPLDLTTSLRHMPSP------- 400
|
170
....*....|....*
gi 530419694 2168 PSAATKFPPEITVTP 2182
Cdd:PHA03325 401 SVTSAPEPPSIPLTY 415
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
2024-2161 |
1.11e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.21 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2024 PGPPRPHRPEATPSMASLGPEGEelarvaegtsfPPQEPRHSPQVKMAPTSSPAEPHCwPAEAALGTGAEPtcsqegklr 2103
Cdd:PRK07764 396 AAAPSAAAAAPAAAPAPAAAAPA-----------AAAAPAPAAAPQPAPAPAPAPAPP-SPAGNAPAGGAP--------- 454
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 530419694 2104 pePRRDGEAQEAASETQPLSSPPTAASSkAPSSGSAQPPEGHPGKPEPSRAKSRPLPN 2161
Cdd:PRK07764 455 --SPPPAAAPSAQPAPAPAAAPEPTAAP-APAPPAAPAPAAAPAAPAAPAAPAGADDA 509
|
|
| PLN03209 |
PLN03209 |
translocon at the inner envelope of chloroplast subunit 62; Provisional |
1958-2190 |
1.25e-03 |
|
translocon at the inner envelope of chloroplast subunit 62; Provisional
Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 43.76 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1958 PKHPkDSRENFFPVTVVPTAPD-PVPADSVQRPSDAHTKPRPA--------LAAATTIITCPPS---ASASTLDQSKDPG 2025
Cdd:PLN03209 330 PKES-DAADGPKPVPTKPVTPEaPSPPIEEEPPQPKAVVPRPLspytayedLKPPTSPIPTPPSsspASSKSVDAVAKPA 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2026 PPRPH-RPEATPSMASLGPEGEELARVAEGTSF-------PPQEPRHSPQVKMAPTSSPAephcwPAEAALGTGAEPTCS 2097
Cdd:PLN03209 409 EPDVVpSPGSASNVPEVEPAQVEAKKTRPLSPYaryedlkPPTSPSPTAPTGVSPSVSST-----SSVPAVPDTAPATAA 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2098 QEGKLRPEPRrdgeaqeaaseTQPLSSPPTAASSKAPSSGSaqppeghPGKPEPSRAKSRPlPNMPKLVIPSAATKFPPE 2177
Cdd:PLN03209 484 TDAAAPPPAN-----------MRPLSPYAVYDDLKPPTSPS-------PAAPVGKVAPSST-NEVVKVGNSAPPTALADE 544
|
250
....*....|...
gi 530419694 2178 ITVTPPTPTLLSP 2190
Cdd:PLN03209 545 QHHAQPKPRPLSP 557
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1945-2187 |
1.38e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1945 AAQRQASGDTPT-TPKHPKDSRENFFPV---------TVVPTAPDPVPADSVQRPSDAHTKPRpalaAATTIITCP-PSA 2013
Cdd:PHA03247 270 ETARGATGPPPPpEAAAPNGAAAPPDGVwgaalagapLALPAPPDPPPPAPAGDAEEEDDEDG----AMEVVSPLPrPRQ 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2014 SASTldqskdpGPPRPHRPEATP--SMASLGpEGEELARVAEgtsfPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTG 2091
Cdd:PHA03247 346 HYPL-------GFPKRRRPTWTPpsSLEDLS-AGRHHPKRAS----LPTRKRRSARHAATPFARGPGGDDQTRPAAPVPA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2092 AEPTCSQEGKLRPEPrrdgeaqeaasetqPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLPNMPKlVIPSAA 2171
Cdd:PHA03247 414 SVPTPAPTPVPASAP--------------PPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRK-ALDALR 478
|
250
....*....|....*.
gi 530419694 2172 TKFPPEitvtPPTPTL 2187
Cdd:PHA03247 479 ERRPPE----PPGADL 490
|
|
| PBP1 |
COG5180 |
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ... |
1943-2185 |
1.76e-03 |
|
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];
Pssm-ID: 444064 [Multi-domain] Cd Length: 548 Bit Score: 43.51 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1943 GAAAQRQASGDTPTTPKH----PKDSRENFFPVTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTiitcpPSASASTL 2018
Cdd:COG5180 152 AALLQRSDPILAKDPDGDsastLPPPAEKLDKVLTEPRDALKDSPEKLDRPKVEVKDEAQEEPPDLT-----GGADHPRP 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2019 DQSKDPGPPRPHRPEATPSMASLGPEGEEL-------ARVAEGTSFPPQEPRHSPQ-------VKMAPTSSPAEPHCWPA 2084
Cdd:COG5180 227 EAASSPKVDPPSTSEARSRPATVDAQPEMRppadakeRRRAAIGDTPAAEPPGLPVleagsepQSDAPEAETARPIDVKG 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2085 EAALGTGAEPTCSQEGKLRPEPRRDGEAQEaasetQPLSSPPTAASSKAPSSGSAQPPEGHPGKPEPSRAKS------RP 2158
Cdd:COG5180 307 VASAPPATRPVRPPGGARDPGTPRPGQPTE-----RPAGVPEAASDAGQPPSAYPPAEEAVPGKPLEQGAPRpgssggDG 381
|
250 260
....*....|....*....|....*..
gi 530419694 2159 LPNMPKLVIPSAATKFPPeiTVTPPTP 2185
Cdd:COG5180 382 APFQPPNGAPQPGLGRRG--APGPPMG 406
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
36-119 |
1.87e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 36 AFALYHKALDLQKHDRFEESAKAYHELLEaslLREAVSSGDekeglkHPGLILkysTYKNLAQLAAQREDLETAMEFYLE 115
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALE---IARRLLGPD------HPLTAT---TLLNLGRLYLELGRYEEALELLER 70
|
....
gi 530419694 116 AVML 119
Cdd:pfam13424 71 ALAL 74
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
2024-2142 |
1.90e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.44 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2024 PGPPRPHRPEATPSMASLGPEgeelarvAEGTSFPPQEPRHSPQVKMAPTSSPAEPhcwPAEAALGTGAEPTCSQEGKLR 2103
Cdd:PRK07764 394 PAAAAPSAAAAAPAAAPAPAA-------AAPAAAAAPAPAAAPQPAPAPAPAPAPP---SPAGNAPAGGAPSPPPAAAPS 463
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 530419694 2104 PEPRR---DGEAQEAASETQPLSSPPTAASSKAPSSGSAQPP 2142
Cdd:PRK07764 464 AQPAPapaAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
|
|
| sucB |
TIGR01347 |
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This ... |
2045-2155 |
2.01e-03 |
|
2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component); This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. [Energy metabolism, TCA cycle]
Pssm-ID: 273565 [Multi-domain] Cd Length: 403 Bit Score: 42.80 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2045 GEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHcwPAEAALGTGAEPTCSQEGKlrpEPRRDGEAQEAASETQPLSS 2124
Cdd:TIGR01347 68 GQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAA--PTAAANRPSLSPAARRLAK---EHGIDLSAVPGTGVTGRVTK 142
|
90 100 110
....*....|....*....|....*....|.
gi 530419694 2125 PPTAASSKAPSsgSAQPPEGHPGKPEPSRAK 2155
Cdd:TIGR01347 143 EDIIKKTEAPA--SAQPPAAAAAAAAPAAAT 171
|
|
| Treacle |
pfam03546 |
Treacher Collins syndrome protein Treacle; |
1982-2216 |
2.03e-03 |
|
Treacher Collins syndrome protein Treacle;
Pssm-ID: 460967 [Multi-domain] Cd Length: 531 Bit Score: 43.14 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1982 PADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKDPGPPRPHRPEATPSMASLGPEGEELARvaEGTSFPPQE 2061
Cdd:pfam03546 168 DSESSSEESDSEGEAPPAATQAKPSGKILQVRPASGPAKGAAPAPPQKAGPVATQVKAERSKEDSESSE--ESSDSEEEA 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2062 PRHSPQVKMAPTSSPAEPHCWPAEaalGTGAEPTCSQEGKLR---PEPRRDGEAQEAASetqpLSSPPTAASSKAP---S 2135
Cdd:pfam03546 246 PAAATPAQAKPALKTPQTKASPRK---GTPITPTSAKVPPVRvgtPAPWKAGTVTSPAC----ASSPAVARGAQRPeedS 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2136 SGSAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTLLSPKGSI-----------SEETKQKLKS 2204
Cdd:pfam03546 319 SSSEESESEEETAPAAAVGQAKSVGKGLQGKAASAPTKGPSGQGTAPVPPGKTGPAVAQvkaeaqedsesSEEESDSEEA 398
|
250
....*....|..
gi 530419694 2205 AILSAQSAANVR 2216
Cdd:pfam03546 399 AATPAQVKASGK 410
|
|
| PHA03321 |
PHA03321 |
tegument protein VP11/12; Provisional |
1948-2192 |
2.47e-03 |
|
tegument protein VP11/12; Provisional
Pssm-ID: 223041 [Multi-domain] Cd Length: 694 Bit Score: 43.02 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1948 RQASGDTPTTPKHPKDSRENFFPVT-----------VVPTAPDPVPAdSVQRPSDAHTK---PRPAlaaattiitcPPSA 2013
Cdd:PHA03321 447 RARPGSTPACARRARAQRARDAGPEyvdplgalrrlPAGAAPPPEPA-AAPSPATYYTRmggGPPR----------LPPR 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2014 SASTLDQSKDPGPPRPHRPEATPSmASLGPEGEELARVAEGTSFPPQEPRHSPqvkmAPTSSPaephcwPAEaALGTGAE 2093
Cdd:PHA03321 516 NRATETLRPDWGPPAAAPPEQMED-PYLEPDDDRFDRRDGAAAAATSHPREAP----APDDDP------IYE-GVSDSEE 583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2094 PTCSQegklRPEPR----RDGEAQEAASETQPLSSPptaassKAPSSGSAQPPEGHPGKP--EPSRAKSRPLPnmpklvi 2167
Cdd:PHA03321 584 PVYEE----IPTPRvyqnPLPRPMEGAGEPPDLDAP------TSPWVEEENPIYGWGDSPlfSPPPAARFPPP------- 646
|
250 260
....*....|....*....|....*
gi 530419694 2168 PSAATKFPPEITVTPPTPTLLSPKG 2192
Cdd:PHA03321 647 DPALSPEPPALPAHRPRPGALAPDG 671
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1925-2159 |
3.30e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 42.56 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1925 VDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPkhpkdsrenffpvtvvptAPDPVPADSVQRPSDAHTKPRPALA-AA 2003
Cdd:PRK12323 395 AAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP------------------APEALAAARQASARGPGGAPAPAPApAA 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2004 TTIITCPPSASASTLDQSKDPGPPRPHRPEATPSMASLG-PEGEELarvaegtsfpPQEPrhspqvkmaPTSSPAEPHCW 2082
Cdd:PRK12323 457 APAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDpPPWEEL----------PPEF---------ASPAPAQPDAA 517
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530419694 2083 PAEAALGTGAEPTCSQEGKLRPEPRrdgEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGKpEPSRAKSRPL 2159
Cdd:PRK12323 518 PAGWVAESIPDPATADPDDAFETLA---PAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD-WPALAARLPV 590
|
|
| TPR_21 |
pfam09976 |
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat. |
48-151 |
3.64e-03 |
|
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
Pssm-ID: 430959 [Multi-domain] Cd Length: 194 Bit Score: 41.03 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 48 KHDRFEESAKAYHELLEAsllreaVSSGDEKEGL--------KHPGlilkySTYKNLAQL-----AAQREDLETAMEfYL 114
Cdd:pfam09976 32 QRSQAEEASALYQQLLEA------VAAGDAAKAQaaaaqlkdEYGG-----TGYAALAALllakaAVEAGDLAAAKA-QL 99
|
90 100 110
....*....|....*....|....*....|....*...
gi 530419694 115 EAVMLDSTDVNLwykiGHVA-LRLIRIPLARHAFEEGL 151
Cdd:pfam09976 100 EWVADNAKDEAL----KALArLRLARVLLAQGKYDEAL 133
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
34-174 |
3.65e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.64 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 34 AEAFALYHKALDLQKHDRFEESAKAYHELLEasllreavssgdekeglKHPGLIlkySTYKNLAQLAAQREDLETAMEFY 113
Cdd:COG2956 6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALE-----------------LDPETV---EAHLALGNLYRRRGEYDRAIRIH 65
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530419694 114 LEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG2956 66 QKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW 126
|
|
| PHA03369 |
PHA03369 |
capsid maturational protease; Provisional |
2037-2224 |
4.22e-03 |
|
capsid maturational protease; Provisional
Pssm-ID: 223061 [Multi-domain] Cd Length: 663 Bit Score: 42.29 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2037 SMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALgTGAEPTCSQEGKLRPEPRRDGEAQEAA 2116
Cdd:PHA03369 349 KTASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPM-TAYPPVPQFCGDPGLVSPYNPQSPGTS 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2117 SETQPLSS-PPT-AASSKAPSSGSAQPPEGHPGKPEPSRAKSRPLP-NMPKLVIPSAATKFPPEITVTPPTPTLLSPKGS 2193
Cdd:PHA03369 428 YGPEPVGPvPPQpTNPYVMPISMANMVYPGHPQEHGHERKRKRGGElKEELIETLKLVKKLKEEQESLAKELEATAHKSE 507
|
170 180 190
....*....|....*....|....*....|.
gi 530419694 2194 ISEETKQKLKSAILSAQSAANVRKESLCQPA 2224
Cdd:PHA03369 508 IKKIAESEFKNAGAKTAAANIEPNCSADAAA 538
|
|
| PRK12727 |
PRK12727 |
flagellar biosynthesis protein FlhF; |
1971-2185 |
4.31e-03 |
|
flagellar biosynthesis protein FlhF;
Pssm-ID: 237182 [Multi-domain] Cd Length: 559 Bit Score: 42.28 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 1971 VTVVPTAPDPVPADSVQRPSDAHTKPRPALAAATTIITCPPSASASTLDQSKdpgpprPHRPEATPSMASLGpegeelAR 2050
Cdd:PRK12727 62 TPATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMA------LRQPVSVPRQAPAA------AP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2051 VAEGTSFPPQEPRHSPQVKMapTSSPAEPHCWPAEAALGTGAEPTCSQegklRPEPRRDGEAQEAASETqPLSSPPTAAS 2130
Cdd:PRK12727 130 VRAASIPSPAAQALAHAAAV--RTAPRQEHALSAVPEQLFADFLTTAP----VPRAPVQAPVVAAPAPV-PAIAAALAAH 202
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 530419694 2131 SKAPSSGSAQPPEGHPGKPEPSrAKSRPLPNMPKLVIPSAATKFPPEITVTPPTP 2185
Cdd:PRK12727 203 AAYAQDDDEQLDDDGFDLDDAL-PQILPPAALPPIVVAPAAPAALAAVAAAAPAP 256
|
|
| KLF9_13_N-like |
cd21975 |
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like ... |
2030-2173 |
5.74e-03 |
|
Kruppel-like factor (KLF) 9, KLF13, KLF14, KLF16, and similar proteins; Kruppel/Krueppel-like transcription factors (KLFs) belong to a family of proteins, called the Specificity Protein (SP)/KLF family, characterized by a C-terminal DNA-binding domain of 81 amino acids consisting of three Kruppel-like C2H2 zinc fingers. These factors bind to a loose consensus motif, namely NNRCRCCYY (where N is any nucleotide; R is A/G, and Y is C/T), such as the recurring motifs in GC and GT boxes (5'-GGGGCGGGG-3' and 5-GGTGTGGGG-3') that are present in promoters and more distal regulatory elements of mammalian genes. Members of the KLF family can act as activators or repressors of transcription depending on cell and promoter context. KLFs regulate various cellular functions, such as proliferation, differentiation, and apoptosis, as well as the development and homeostasis of several types of tissue. KLF9, KLF10, KLF11, KLF13, KLF14, and KLF16 share a conserved alpha-helical motif AA/VXXL that mediates their binding to Sin3A and their activities as transcriptional repressors. In addition to the C-terminal DNA-binding domain, each KLF also has a unique N-terminal activation/repression domain that confers specificity and allows it to bind specifically to a certain partner, leading to distinct activities in vivo. This model represents the related N-terminal domains of KLF9, KLF13, KLF14, KLF16, and similar proteins.
Pssm-ID: 409240 [Multi-domain] Cd Length: 163 Bit Score: 39.67 E-value: 5.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2030 HRPEATPSMASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEGKLRPEPRRD 2109
Cdd:cd21975 19 HGVRPDPEGAGLAAGLDVRATREVAKGPGPPGPAWKPDGADSPGLVTAAPHLLAANVLAPLRGPSVEGSSLESGDADMGS 98
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530419694 2110 GEAQEAASETQPLSSPPTAASSKAPSSGSAQPPEGHPGkPEPSRAKSRPLPNMPKLVIPSAATK 2173
Cdd:cd21975 99 DSDVAPASGAAASTSPESSSDAASSPSPLSLLHPGEAG-LEPERPRPRVRRGVRRRGVTPAAKR 161
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
2028-2219 |
9.01e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 9.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2028 RPHRPEATPSM---ASLGPEGEELARVAEGTSFPPQEPRHSPQVKMAPTSSPAEPHCWPAEAALGTGAEPTCSQEgklRP 2104
Cdd:PRK07994 360 HPAAPLPEPEVppqSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQG---AT 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530419694 2105 EPRRDGEAqeAASETQPLSSPPTAASSKAPssgSAQPPEGHPGKPEPSRAKSR-PLPNMPKLVIPSAATKFPPEITVTPP 2183
Cdd:PRK07994 437 KAKKSEPA--AASRARPVNSALERLASVRP---APSALEKAPAKKEAYRWKATnPVEVKKEPVATPKALKKALEHEKTPE 511
|
170 180 190
....*....|....*....|....*....|....*....
gi 530419694 2184 TPTLLSPKGSISE---ETKQKLKSAILSAQSAANVRKES 2219
Cdd:PRK07994 512 LAAKLAAEAIERDpwaALVSQLGLPGLVEQLALNAWKEE 550
|
|
| |
