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Conserved domains on  [gi|530411724|ref|XP_005257182|]
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centrosomal protein of 112 kDa isoform X9 [Homo sapiens]

Protein Classification

coiled-coil domain-containing protein( domain architecture ID 1000037)

coiled-coil domain-containing protein contains a region with alpha-helical coiled-coil sequence signatures that is being annotated by a variety of protein family models, not necessarily indicating family membership

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 66-626 5.62e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 65.73  E-value: 5.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  66 LQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSEL 145
Cdd:COG1196  232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 146 QEVKARRNTLHKEKDHLVNDyeqnmkllqtkyDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLR 225
Cdd:COG1196  312 RELEERLEELEEELAELEEE------------LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 226 DQENKFQMEKSHLKHIYEKKAHDLQSE-LDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVE 304
Cdd:COG1196  380 ELEELAEELLEALRAAAELAAQLEELEeAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 305 LNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEflWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHE 384
Cdd:COG1196  460 ALLELLAELLEEAALLEAALAELLEELAEAAARL--LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 385 REIEN----LEKQLRAANMEHENQIQEFKKRD----AQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRAT 456
Cdd:COG1196  538 AALEAalaaALQNIVVEDDEVAAAAIEYLKAAkagrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 457 REHEIVVNKLKAESEKMKIELKKTHAAEtemtlekanskLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 536
Cdd:COG1196  618 LGDTLLGRTLVAARLEAALRRAVTLAGR-----------LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 537 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASlRQEL 616
Cdd:COG1196  687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD-LEEL 765

                        570
                 ....*....|
gi 530411724 617 EDTISSLKSQ 626
Cdd:COG1196  766 ERELERLERE 775
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 66-626 5.62e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 65.73  E-value: 5.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  66 LQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSEL 145
Cdd:COG1196  232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 146 QEVKARRNTLHKEKDHLVNDyeqnmkllqtkyDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLR 225
Cdd:COG1196  312 RELEERLEELEEELAELEEE------------LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 226 DQENKFQMEKSHLKHIYEKKAHDLQSE-LDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVE 304
Cdd:COG1196  380 ELEELAEELLEALRAAAELAAQLEELEeAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 305 LNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEflWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHE 384
Cdd:COG1196  460 ALLELLAELLEEAALLEAALAELLEELAEAAARL--LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 385 REIEN----LEKQLRAANMEHENQIQEFKKRD----AQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRAT 456
Cdd:COG1196  538 AALEAalaaALQNIVVEDDEVAAAAIEYLKAAkagrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 457 REHEIVVNKLKAESEKMKIELKKTHAAEtemtlekanskLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 536
Cdd:COG1196  618 LGDTLLGRTLVAARLEAALRRAVTLAGR-----------LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 537 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASlRQEL 616
Cdd:COG1196  687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD-LEEL 765

                        570
                 ....*....|
gi 530411724 617 EDTISSLKSQ 626
Cdd:COG1196  766 ERELERLERE 775
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 113-432 1.19e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.98  E-value: 1.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   113 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEhalsA 192
Cdd:TIGR02168  661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKD----L 735

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   193 SKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyEKKAHDLQSELDKGKEDTQKKIHKFEEALK 272
Cdd:TIGR02168  736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA-----EAEIEELEAQIEQLKEELKALREALDELRA 810

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   273 EKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKvyAEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEQ 352
Cdd:TIGR02168  811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI--EELSEDIESLAAEIEELEELIEELESE-LEALLNERASLEE 887

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   353 QIVELKL----------EHEQEKTHLLQQHNAEKDSLVRDHER------EIENLEKQLRA-ANMEHENQIQEFKKRDAQv 415
Cdd:TIGR02168  888 ALALLRSeleelseelrELESKRSELRRELEELREKLAQLELRleglevRIDNLQERLSEeYSLTLEEAEALENKIEDD- 966

                          330
                   ....*....|....*..
gi 530411724   416 IADMEAQVHKLREELIN 432
Cdd:TIGR02168  967 EEEARRRLKRLENKIKE 983
PTZ00121 PTZ00121
MAEBL; Provisional
 217-603 1.12e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.98  E-value: 1.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  217 ELQRKQQLRDQENKFQMEKSHLKHIYEKKAhdlqSELDKGKEDTQKKihkfEEALKEKEEQLTRVTEVQRLQAQQADAAL 296
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKA----DEAKKKAEEAKKK----ADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  297 EEFKRQVELnsekvyAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEqqivELKLEHEQEKthllqqhNAEK 376
Cdd:PTZ00121 1360 EAAEEKAEA------AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----ELKKAAAAKK-------KADE 1422

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  377 DSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQlvELGLLREEEKQRAT 456
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKAD 1500

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  457 REHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 536
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530411724  537 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETK 603
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 327-592 3.82e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 47.04  E-value: 3.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  327 RSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLV-RDHEREIENLEKQLraanmehENQI 405
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL-------ERIR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  406 QEFKKRDAQVIADME--AQVHKLRE-ELINVNSQRKQQLVELGL-------LREEEKQRATREHEIVVNKLKAESEKMKI 475
Cdd:pfam17380 355 QEERKRELERIRQEEiaMEISRMRElERLQMERQQKNERVRQELeaarkvkILEEERQRKIQQQKVEMEQIRAEQEEARQ 434

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  476 ELKKTHAAETEMTLEkansKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 555
Cdd:pfam17380 435 REVRRLEEERAREME----RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE 510

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 530411724  556 DNDQAiKVLQDELENRSNQVRCAEKKLQHKELESQEQ 592
Cdd:pfam17380 511 EERKR-KLLEKEMEERQKAIYEEERRREAEEERRKQQ 546
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 292-604 1.28e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 41.92  E-value: 1.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 292 ADAALEEFKRQVELNSEKVYAEMKEQMEKVeadltrskslREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKT----- 366
Cdd:NF033838  52 GNESQKEHAKEVESHLEKILSEIQKSLDKR----------KHTQNVALNKKLSDIKTEYLYELNVLKEKSEAELTsktkk 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 367 ------HLLQQHNAEKDSLVRDHEREIENLEKQLRAANME-HENQIQEFKKRDAQVIADMEAQVHKLREELINVN---SQ 436
Cdd:NF033838 122 eldaafEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEdRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEakePR 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 437 RKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK----------EYTQK 506
Cdd:NF033838 202 DEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKrgvlgepatpDKKEN 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 507 LAKSSQIIAELQTTIS-SLKEEnsQQQLAAERRLQDVRQKFEDEKKQLIRD-NDQAIKVLQDELENRSNQVRCAEKKL-- 582
Cdd:NF033838 282 DAKSSDSSVGEETLPSpSLKPE--KKVAEAEKKVEEAKKKAKDQKEEDRRNyPTNTYKTLELEIAESDVKVKEAELELvk 359

                        330       340
                 ....*....|....*....|...
gi 530411724 583 -QHKELESQEQITYIRQEYETKL 604
Cdd:NF033838 360 eEAKEPRNEEKIKQAKAKVESKK 382
 
Name Accession Description Interval E-value
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 66-626 5.62e-11

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 65.73  E-value: 5.62e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  66 LQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSEL 145
Cdd:COG1196  232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 146 QEVKARRNTLHKEKDHLVNDyeqnmkllqtkyDADINLLKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLR 225
Cdd:COG1196  312 RELEERLEELEEELAELEEE------------LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 226 DQENKFQMEKSHLKHIYEKKAHDLQSE-LDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVE 304
Cdd:COG1196  380 ELEELAEELLEALRAAAELAAQLEELEeAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 305 LNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEflWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHE 384
Cdd:COG1196  460 ALLELLAELLEEAALLEAALAELLEELAEAAARL--LLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYE 537

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 385 REIEN----LEKQLRAANMEHENQIQEFKKRD----AQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRAT 456
Cdd:COG1196  538 AALEAalaaALQNIVVEDDEVAAAAIEYLKAAkagrATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYV 617

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 457 REHEIVVNKLKAESEKMKIELKKTHAAEtemtlekanskLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 536
Cdd:COG1196  618 LGDTLLGRTLVAARLEAALRRAVTLAGR-----------LREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 537 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMPASlRQEL 616
Cdd:COG1196  687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD-LEEL 765

                        570
                 ....*....|
gi 530411724 617 EDTISSLKSQ 626
Cdd:COG1196  766 ERELERLERE 775
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 258-569 1.27e-08

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 58.41  E-value: 1.27e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 258 EDTQKKIHKFEEALKEKEEQLTRVtEVQRLQAQQADAALEEFK-RQVELNSEKvYAEMKEQMEKVEADLTRSKSLREKQS 336
Cdd:COG1196  182 EATEENLERLEDILGELERQLEPL-ERQAEKAERYRELKEELKeLEAELLLLK-LRELEAELEELEAELEELEAELEELE 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 337 KEF-LWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEfKKRDAQV 415
Cdd:COG1196  260 AELaELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE-LEELEEE 338

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 416 IADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSK 495
Cdd:COG1196  339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530411724 496 LKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELE 569
Cdd:COG1196  419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 113-432 1.19e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 51.98  E-value: 1.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   113 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKyDADINLLKQEhalsA 192
Cdd:TIGR02168  661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL-SRQISALRKD----L 735

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   193 SKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyEKKAHDLQSELDKGKEDTQKKIHKFEEALK 272
Cdd:TIGR02168  736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA-----EAEIEELEAQIEQLKEELKALREALDELRA 810

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   273 EKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKvyAEMKEQMEKVEADLTRSKSLREKQSKEfLWQLEDIRQRYEQ 352
Cdd:TIGR02168  811 ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQI--EELSEDIESLAAEIEELEELIEELESE-LEALLNERASLEE 887

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   353 QIVELKL----------EHEQEKTHLLQQHNAEKDSLVRDHER------EIENLEKQLRA-ANMEHENQIQEFKKRDAQv 415
Cdd:TIGR02168  888 ALALLRSeleelseelrELESKRSELRRELEELREKLAQLELRleglevRIDNLQERLSEeYSLTLEEAEALENKIEDD- 966

                          330
                   ....*....|....*..
gi 530411724   416 IADMEAQVHKLREELIN 432
Cdd:TIGR02168  967 EEEARRRLKRLENKIKE 983
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 4-569 1.52e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 51.48  E-value: 1.52e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   4 KRLLESLKRKTLIRDCQVIRETKEDQIAELKKICEQSTESLNndwekKLHNAVAEMEQEKFDLQKQHTENIQELLEDTN- 82
Cdd:COG1196  222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELA-----ELEAELEELRLELEELELELEEAQAEEYELLAe 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  83 -VRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDH 161
Cdd:COG1196  297 lARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 162 LVNDYEQNMKLLQTKYDADINLLKQEHALSASkassmIEELEQNVCQLKQQLQESELQRKQQLRDQEnkfqmekshlkhi 241
Cdd:COG1196  377 AEEELEELAEELLEALRAAAELAAQLEELEEA-----EEALLERLERLEEELEELEEALAELEEEEE------------- 438

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 242 yEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKV 321
Cdd:COG1196  439 -EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLA 517

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 322 EAD-LTRSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNA--------EKDSLVRDHEREIENLEK 392
Cdd:COG1196  518 GLRgLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflplDKIRARAALAAALARGAI 597

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 393 QLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEK 472
Cdd:COG1196  598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 473 MKIELKKTHAAEtEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQttiSSLKEENSQQQLAAERRLQDVRQKFEDEKKQ 552
Cdd:COG1196  678 EAELEELAERLA-EEELELEEALLAEEEEERELAEAEEERLEEELE---EEALEEQLEAEREELLEELLEEEELLEEEAL 753

                        570
                 ....*....|....*..
gi 530411724 553 LIRDNDQAIKVLQDELE 569
Cdd:COG1196  754 EELPEPPDLEELERELE 770
PTZ00121 PTZ00121
MAEBL; Provisional
 217-603 1.12e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.98  E-value: 1.12e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  217 ELQRKQQLRDQENKFQMEKSHLKHIYEKKAhdlqSELDKGKEDTQKKihkfEEALKEKEEQLTRVTEVQRLQAQQADAAL 296
Cdd:PTZ00121 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKA----DEAKKKAEEAKKK----ADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  297 EEFKRQVELnsekvyAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEqqivELKLEHEQEKthllqqhNAEK 376
Cdd:PTZ00121 1360 EAAEEKAEA------AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD----ELKKAAAAKK-------KADE 1422

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  377 DSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQlvELGLLREEEKQRAT 456
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKAD 1500

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  457 REHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAE 536
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 530411724  537 RRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETK 603
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 272-492 1.23e-05

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 48.67  E-value: 1.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 272 KEKEEQLTRVTEVQRLQAQQADAALEEFKRQVelnsEKVYAEMKEQMEKVEAdltRSKSLREKQskeflwqlediRQRYE 351
Cdd:PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEA----EKLKEELEEKKEKLQE---EEDKLLEEA-----------EKEAQ 576

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 352 QQIVELKLEHEQEKTHLLQQHNAEKDSLVrdhEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLRE--E 429
Cdd:PRK00409 577 QAIKEAKKEADEIIKELRQLQKGGYASVK---AHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQkgE 653

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530411724 430 LINVNSQRKQQL--------VELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKA 492
Cdd:PRK00409 654 VLSIPDDKEAIVqagimkmkVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLELDLRGMRYEEALERLDKY 724
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 308-599 3.32e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 47.36  E-value: 3.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   308 EKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQivelkleheQEKTHLLQQHNAEKDSLVRDHEREI 387
Cdd:TIGR02168  192 EDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEEL---------REELEELQEELKEAEEELEELTAEL 262

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   388 ENLEKQ---LRAANMEHENQIQEFKKR---DAQVIADMEAQVHKLREELINVNSQRKQQLVELGLL--REEEKQRATREH 459
Cdd:TIGR02168  263 QELEEKleeLRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQLEELEAQLEELesKLDELAEELAEL 342

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   460 EIVVNKLKAESEKMKIELKkthaaETEMTLEKANSKLKQIEKEYTQKLAKSSQI---IAELQTTISSLKEENSQQQLAAE 536
Cdd:TIGR02168  343 EEKLEELKEELESLEAELE-----ELEAELEELESRLEELEEQLETLRSKVAQLelqIASLNNEIERLEARLERLEDRRE 417

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530411724   537 RRLQ---DVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQE 599
Cdd:TIGR02168  418 RLQQeieELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 327-592 3.82e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 47.04  E-value: 3.82e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  327 RSKSLREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLV-RDHEREIENLEKQLraanmehENQI 405
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyAEQERMAMEREREL-------ERIR 354

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  406 QEFKKRDAQVIADME--AQVHKLRE-ELINVNSQRKQQLVELGL-------LREEEKQRATREHEIVVNKLKAESEKMKI 475
Cdd:pfam17380 355 QEERKRELERIRQEEiaMEISRMRElERLQMERQQKNERVRQELeaarkvkILEEERQRKIQQQKVEMEQIRAEQEEARQ 434

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  476 ELKKTHAAETEMTLEkansKLKQIEKEYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR 555
Cdd:pfam17380 435 REVRRLEEERAREME----RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIE 510

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 530411724  556 DNDQAiKVLQDELENRSNQVRCAEKKLQHKELESQEQ 592
Cdd:pfam17380 511 EERKR-KLLEKEMEERQKAIYEEERRREAEEERRKQQ 546
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 108-647 5.53e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.59  E-value: 5.53e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   108 ARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYeQNMKLLQTKYDADINLLKQE 187
Cdd:TIGR02168  232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-YALANEISRLEQQKQILRER 310

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   188 HALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHlkhiyeKKAHDLQSELDKGKEDTQKKIHKF 267
Cdd:TIGR02168  311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL------EELEAELEELESRLEELEEQLETL 384

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   268 EEALKEKEEQLtrvtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIR 347
Cdd:TIGR02168  385 RSKVAQLELQI----ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   348 QRYE--QQIVELKLEHEQEKTHLLQQHNAEKDSLVRDhEREIENLEKQLRAAnMEHENQIQEFKKRDAQVI---ADMEAQ 422
Cdd:TIGR02168  461 EALEelREELEEAEQALDAAERELAQLQARLDSLERL-QENLEGFSEGVKAL-LKNQSGLSGILGVLSELIsvdEGYEAA 538

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   423 VHKLREELIN--VNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEK--------- 491
Cdd:TIGR02168  539 IEAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfdpklrkal 618

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   492 ---------------ANSKLKQIEKEYT-----------------------QKLAKSSQIIAELQTTISSL--KEENSQQ 531
Cdd:TIGR02168  619 syllggvlvvddldnALELAKKLRPGYRivtldgdlvrpggvitggsaktnSSILERRREIEELEEKIEELeeKIAELEK 698

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   532 QLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYiRQEYETKLKGLMPA- 610
Cdd:TIGR02168  699 ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE-IEELEERLEEAEEEl 777

                          570       580       590       600
                   ....*....|....*....|....*....|....*....|.
gi 530411724   611 ----SLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 647
Cdd:TIGR02168  778 aeaeAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 299-630 6.79e-05

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 46.20  E-value: 6.79e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   299 FKRQVELnsEKVYAEMKEQMEKVEADLTRSKSLREKQSkEFLWQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDs 378
Cdd:TIGR02168  673 LERRREI--EELEEKIEELEEKIAELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER- 748

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   379 lVRDHEREIENLEKQlRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREeekqratre 458
Cdd:TIGR02168  749 -IAQLSKELTELEAE-IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE--------- 817

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   459 hEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEytqkLAKSSQIIAELQTTISSLKEENSQQQLAAERR 538
Cdd:TIGR02168  818 -EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNERASLEEALALL 892

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   539 LQDVRQKFEDekkqlIRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLKGLMP-----ASLR 613
Cdd:TIGR02168  893 RSELEELSEE-----LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEAlenkiEDDE 967

                          330
                   ....*....|....*..
gi 530411724   614 QELEDTISSLKSQVNFL 630
Cdd:TIGR02168  968 EEARRRLKRLENKIKEL 984
PTZ00121 PTZ00121
MAEBL; Provisional
 4-570 1.03e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 45.90  E-value: 1.03e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724    4 KRLLESLKRKTLIRDCQVIRETKE-DQIAELKKICEQSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTN 82
Cdd:PTZ00121 1277 ARKADELKKAEEKKKADEAKKAEEkKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAA 1356

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   83 VRLNKMESEYMAQTQSTNHMIKELEArvqqLTGEAENsnLQRQKLIQEKAELERCYQITCSELQEVKARRNTLhKEKDHL 162
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKADA----AKKKAEE--KKKADEAKKKAEEDKKKADELKKAAAAKKKADEA-KKKAEE 1429

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  163 VNDYEQNMKLLQTKYDADINLLKQEHALSASKASSMIEElEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIY 242
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE-AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  243 EKKAHDLQSELDKGKEDTQKKIHKfeealKEKEEQLTRVTEVQRLqaqqadaalEEFKRQVELNSEKvyaEMKEQMEKVE 322
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEAKKAEE-----AKKADEAKKAEEKKKA---------DELKKAEELKKAE---EKKKAEEAKK 1571

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  323 ADLTRSKSLRekqskeflwQLEDIRQRYEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQlraaNMEHE 402
Cdd:PTZ00121 1572 AEEDKNMALR---------KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK----KVEQL 1638

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  403 NQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHA 482
Cdd:PTZ00121 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKA 1718

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  483 AETEMTLEKANSKLKQIEK--EYTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLIR-DNDQ 559
Cdd:PTZ00121 1719 EELKKAEEENKIKAEEAKKeaEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRmEVDK 1798

                         570
                  ....*....|.
gi 530411724  560 AIKVLQDELEN 570
Cdd:PTZ00121 1799 KIKDIFDNFAN 1809
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
290-527 1.36e-04

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 45.29  E-value: 1.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  290 QQADAALEEFKRqvelnsekvYAEMKEQMEKVEADLTRSKSLREKQSKefLWQLEDIRQRYEQQIVELKLEHEQEKTHLL 369
Cdd:COG4913   225 EAADALVEHFDD---------LERAHEALEDAREQIELLEPIRELAER--YAAARERLAELEYLRAALRLWFAQRRLELL 293

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  370 QQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQ---QLVELGL 446
Cdd:COG4913   294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARleaLLAALGL 373

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  447 LREEEKQRATREHEivvnKLKAESEKMKIELKKTHAAETEM--TLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTISSL 524
Cdd:COG4913   374 PLPASAEEFAALRA----EAAALLEALEEELEALEEALAEAeaALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449


                  ...
gi 530411724  525 KEE 527
Cdd:COG4913   450 AEA 452
PTZ00121 PTZ00121
MAEBL; Provisional
 185-605 2.20e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.75  E-value: 2.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  185 KQEHALSASKASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKhiyEKKAHDLQSELDKGKEDTQKK- 263
Cdd:PTZ00121 1310 KAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE---KAEAAEKKKEEAKKKADAAKKk 1386

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  264 ---IHKFEEALKEKEEQLTRVTEVQRLQAQQADAalEEFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFL 340
Cdd:PTZ00121 1387 aeeKKKADEAKKKAEEDKKKADELKKAAAAKKKA--DEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  341 WQLEDIRQRYEQQivelKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIAD-- 418
Cdd:PTZ00121 1464 KKAEEAKKADEAK----KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADea 1539

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  419 MEAQVHKLREELINVNSQRKQQLVElgllREEEKQR-------ATREHEIV--VNKLKAESEKMKIELKKTHAAETEMTL 489
Cdd:PTZ00121 1540 KKAEEKKKADELKKAEELKKAEEKK----KAEEAKKaeedknmALRKAEEAkkAEEARIEEVMKLYEEEKKMKAEEAKKA 1615

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  490 EKANSKLKQIEKEYTQKlAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKK-QLIRDNDQAIKVLQDEL 568
Cdd:PTZ00121 1616 EEAKIKAEELKKAEEEK-KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKaEEAKKAEEDEKKAAEAL 1694

                         410       420       430
                  ....*....|....*....|....*....|....*..
gi 530411724  569 ENRSNQVRCAEKKLQHKELESQEQITYIRQEYETKLK 605
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
 247-609 2.21e-04

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 44.34  E-value: 2.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  247 HDLQSELDKGKEDTQKKIHKFE-EALKEKEEQLTRVTEVQRLQAQQADAALEEFKRQVEL--NSEKVYAEMKEQMEKVEA 323
Cdd:pfam17380 276 HIVQHQKAVSERQQQEKFEKMEqERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIyaEQERMAMERERELERIRQ 355

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  324 DlTRSKSLREKQSKEFLWQLEDIRQryeqqIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHEN 403
Cdd:pfam17380 356 E-ERKRELERIRQEEIAMEISRMRE-----LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  404 QiqEFKKRDAQVIADMEA-QVHKLREElinvNSQRKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHA 482
Cdd:pfam17380 430 E--EARQREVRRLEEERArEMERVRLE----EQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  483 AETEMTLEKANSKLKQIEKEYTQKlakssqIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQLirdndqaik 562
Cdd:pfam17380 504 RKQAMIEEERKRKLLEKEMEERQK------AIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRL--------- 568

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 530411724  563 vlqDELENRSNQVR-CAEKKLQHKELESQEQITYIRQEYETKLKGLMP 609
Cdd:pfam17380 569 ---EAMEREREMMRqIVESEKARAEYEATTPITTIKPIYRPRISEYQP 613
PTZ00121 PTZ00121
MAEBL; Provisional
 208-512 2.22e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 44.75  E-value: 2.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  208 QLKQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEAlKEKEEQLTRVTEVQRL 287
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEA-KIKAEELKKAEEEKKK 1634

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  288 QAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQQ---IVELKLEHEQE 364
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEakkAEELKKKEAEE 1714

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  365 KTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEHEnqiQEFKKRDAQVIADMEAQVHKLREELINVNSQRKQQLVEL 444
Cdd:PTZ00121 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530411724  445 GLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQ 512
Cdd:PTZ00121 1792 RRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNE 1859
PRK12704 PRK12704
phosphodiesterase; Provisional
 210-364 2.45e-04

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 44.00  E-value: 2.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 210 KQQLQESELQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQA 289
Cdd:PRK12704  30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKRE 109

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530411724 290 QQADAALEEFKRQvELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLwqLEDIRQRYEQQIVELKLEHEQE 364
Cdd:PRK12704 110 EELEKKEKELEQK-QQELEKKEEELEELIEEQLQELERISGLTAEEAKEIL--LEKVEEEARHEAAVLIKEIEEE 181
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
72-627 4.43e-04

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 43.51  E-value: 4.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  72 ENIQELLEDTNVRLNKMEsEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQitcsELQEVKAR 151
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEE 239

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 152 RNTLHKEKDHLvndyEQNMKLLQTKydadinllKQEHALSASKASSMIEELEQNVCQLKQQLQESELQRK-QQLRDQENK 230
Cdd:PRK03918 240 IEELEKELESL----EGSKRKLEEK--------IRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKlSEFYEEYLD 307

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 231 FQMEKSHLKHIYEKKAHDLQS-------------ELDKGKEDTQKKIHKFEEALKEKEEQLTRVTEVQRLQAQQADAALE 297
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEErikeleekeerleELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE 387

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 298 EFKRQVElNSEKVYAEMKEQMEKVEADLTRSKSlREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEkthLLQQHNAEKD 377
Cdd:PRK03918 388 KLEKELE-ELEKAKEEIEEEISKITARIGELKK-EIKELKKAIEELKKAKGKCPVCGRELTEEHRKE---LLEEYTAELK 462

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 378 SlVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQviadmeaqvHKLREELINVnsqrKQQLVELGLLREEEKQRATR 457
Cdd:PRK03918 463 R-IEKELKEIEEKERKLRKELRELEKVLKKESELIKL---------KELAEQLKEL----EEKLKKYNLEELEKKAEEYE 528

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 458 EHEIVVNKLKAESEKMKIELKKTHA-----AETEMTLEKANSKLKQIEKEYTQKLAKSsqiIAELQTTISSLKE--ENSQ 530
Cdd:PRK03918 529 KLKEKLIKLKGEIKSLKKELEKLEElkkklAELEKKLDELEEELAELLKELEELGFES---VEELEERLKELEPfyNEYL 605

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 531 QQLAAERRLQDVRQKFEDEKKQL--IRDNDQAIKVLQDELENRSNQVRCAEKKLQHKELEsqEQITYIRQEYETKLKGLM 608
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELdkAFEELAETEKRLEELRKELEELEKKYSEEEYEELR--EEYLELSRELAGLRAELE 683

                        570       580
                 ....*....|....*....|
gi 530411724 609 PA-SLRQELEDTISSLKSQV 627
Cdd:PRK03918 684 ELeKRREEIKKTLEKLKEEL 703
PLN02939 PLN02939
transferase, transferring glycosyl groups
 39-368 5.05e-04

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 43.35  E-value: 5.05e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  39 QSTESLNNDWEKKLHNAVAEMEQEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQTQSTNHMIKELEARVQQ------ 112
Cdd:PLN02939  66 QSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNaeknil 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 113 LTGEAENSNLQR-QKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLqtkydadiNLLKQEHALS 191
Cdd:PLN02939 146 LLNQARLQALEDlEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLR--------NELLIRGATE 217

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 192 ASKASSMIEEL----EQNVcQLKQQLQESELQRKQQLRDQENKFQMEKSHlkHIYEKKAHDLQSELDKGKEDTQKKIHKF 267
Cdd:PLN02939 218 GLCVHSLSKELdvlkEENM-LLKDDIQFLKAELIEVAETEERVFKLEKER--SLLDASLRELESKFIVAQEDVSKLSPLQ 294

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 268 EEALKEKEEQLTRVTEVQRLQAQQADAALE---EFKRQVE-----LNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEF 339
Cdd:PLN02939 295 YDCWWEKVENLQDLLDRATNQVEKAALVLDqnqDLRDKVDkleasLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEI 374

                        330       340       350
                 ....*....|....*....|....*....|....
gi 530411724 340 LWQLedirQRYEQQIVEL-----KLEHEQEKTHL 368
Cdd:PLN02939 375 HSYI----QLYQESIKEFqdtlsKLKEESKKRSL 404
PRK00409 PRK00409
recombination and DNA strand exchange inhibitor protein; Reviewed
 194-334 5.81e-04

recombination and DNA strand exchange inhibitor protein; Reviewed


Pssm-ID: 234750 [Multi-domain]  Cd Length: 782  Bit Score: 42.89  E-value: 5.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 194 KASSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQ-MEKSHLKhiYEKKAHDLQSELDKGKEDTQKKIHK-FEEAL 271
Cdd:PRK00409 506 EAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKeAEKLKEE--LEEKKEKLQEEEDKLLEEAEKEAQQaIKEAK 583

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530411724 272 KEKEEQLTRVTEVQRLQ-----AQQADAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREK 334
Cdd:PRK00409 584 KEADEIIKELRQLQKGGyasvkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQK 651
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 198-643 6.76e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 42.80  E-value: 6.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   198 MIEELEQNVCQLKQQLQES-ELQRKQQ---------LRDQENKFQMEKSHLKHIYEKKAhdlQSELDKgKEDTQKKIHKF 267
Cdd:pfam15921   79 VLEEYSHQVKDLQRRLNESnELHEKQKfylrqsvidLQTKLQEMQMERDAMADIRRRES---QSQEDL-RNQLQNTVHEL 154

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   268 EEALKEKEEQL----TRVTEVQRLQAQQaDAALEEFKRQVELNSEKVYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQL 343
Cdd:pfam15921  155 EAAKCLKEDMLedsnTQIEQLRKMMLSH-EGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEI 233

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   344 EDIRQR---YEQQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHEREIENLEKQLRAANMEhENQIQefkkrdaqviadme 420
Cdd:pfam15921  234 SYLKGRifpVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQ-ANSIQ-------------- 298

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   421 AQVHKLREELINVNSQRKQQLVELgllreeekqratrehEIVVNKLKAESEKMKiELKKTHAAETEMTLEKANSKLKQIE 500
Cdd:pfam15921  299 SQLEIIQEQARNQNSMYMRQLSDL---------------ESTVSQLRSELREAK-RMYEDKIEELEKQLVLANSELTEAR 362

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   501 KEYTQKLAKSSQIIAELQTTISSLkeensqqqlaaERRLQDVRQKFEDEKKQLIRDNDQAIKV--LQDELENRSNQVRCA 578
Cdd:pfam15921  363 TERDQFSQESGNLDDQLQKLLADL-----------HKREKELSLEKEQNKRLWDRDTGNSITIdhLRRELDDRNMEVQRL 431

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 530411724   579 EKKLQHKELESQEQITYIRQEYETKLKGLMP-ASLRQELEDTISSLKSQVNFLQKRASILQEELTT 643
Cdd:pfam15921  432 EALLKAMKSECQGQMERQMAAIQGKNESLEKvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERT 497
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
249-467 8.87e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 42.31  E-value: 8.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 249 LQSELDKGKEDTQKKIHKFEEALKEKEEQLtrvtevqrlqaQQADAALEEFKRQ---VELNSE-----KVYAEMKEQMEK 320
Cdd:COG3206  162 LEQNLELRREEARKALEFLEEQLPELRKEL-----------EEAEAALEEFRQKnglVDLSEEaklllQQLSELESQLAE 230

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 321 VEADLTRSKSLR---EKQSKEFLWQLEDIR-----QRYEQQIVELKLEHEQEKTHLLQQHNAekdslVRDHEREIENLEK 392
Cdd:COG3206  231 ARAELAEAEARLaalRAQLGSGPDALPELLqspviQQLRAQLAELEAELAELSARYTPNHPD-----VIALRAQIAALRA 305

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530411724 393 QLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELINVNSQRkQQLVELgllrEEEKQRATREHEIVVNKLK 467
Cdd:COG3206  306 QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE-AELRRL----EREVEVARELYESLLQRLE 375
PRK01156 PRK01156
chromosome segregation protein; Provisional
 113-633 1.02e-03

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 42.20  E-value: 1.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 113 LTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHKEKDHLVNDYEQNMKLLQTKydadiNLLKQEHALSA 192
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMK-----NRYESEIKTAE 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 193 SKAsSMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLKHiYEKKAHDLQSELDKGKEDtqkkIHKFEEALK 272
Cdd:PRK01156 263 SDL-SMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIEN-KKQILSNIDAEINKYHAI----IKKLSVLQK 336

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 273 EKEEQLTRVTEVQRLQAQQADAALEEFKRQVELNSekvYAEMKEQMEKVEADLTRSKSLREKQSKEFLWQLEDIRQRYEQ 352
Cdd:PRK01156 337 DYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKS---IESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNE 413

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 353 QIVELkleheQEKTHLLQQHNAEKDSLvRDHEREIENLEKQLRAANM-------EHENQIQEFKKRDAQVIADMEAQVHK 425
Cdd:PRK01156 414 INVKL-----QDISSKVSSLNQRIRAL-RENLDELSRNMEMLNGQSVcpvcgttLGEEKSNHIINHYNEKKSRLEEKIRE 487

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 426 LREELINVNSQRKQQLVELGLLREEEKQRATREHEIvVNKLKAESEKMKI---ELKKTHAAETEMTLEKANSKLKQIEKE 502
Cdd:PRK01156 488 IEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNK-IESARADLEDIKIkinELKDKHDKYEEIKNRYKSLKLEDLDSK 566

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 503 YTQKLAKSSQIIAELQTTISSLKEENSQQQLAAERRLQDVRQKFEDEKKQlirdNDQAIKVLQDELENRSNQVRCAEKKL 582
Cdd:PRK01156 567 RTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSY----IDKSIREIENEANNLNNKYNEIQENK 642

                        490       500       510       520       530
                 ....*....|....*....|....*....|....*....|....*....|.
gi 530411724 583 QHKElESQEQITYIRQEYeTKLKGLMPAslRQELEDTISSLKSQVNFLQKR 633
Cdd:PRK01156 643 ILIE-KLRGKIDNYKKQI-AEIDSIIPD--LKEITSRINDIEDNLKKSRKA 689
PspC_subgroup_1 NF033838
pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, ...
 292-604 1.28e-03

pneumococcal surface protein PspC, choline-binding form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A. The other form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site.


Pssm-ID: 468201 [Multi-domain]  Cd Length: 684  Bit Score: 41.92  E-value: 1.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 292 ADAALEEFKRQVELNSEKVYAEMKEQMEKVeadltrskslREKQSKEFLWQLEDIRQRYEQQIVELKLEHEQEKT----- 366
Cdd:NF033838  52 GNESQKEHAKEVESHLEKILSEIQKSLDKR----------KHTQNVALNKKLSDIKTEYLYELNVLKEKSEAELTsktkk 121

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 367 ------HLLQQHNAEKDSLVRDHEREIENLEKQLRAANME-HENQIQEFKKRDAQVIADMEAQVHKLREELINVN---SQ 436
Cdd:NF033838 122 eldaafEQFKKDTLEPGKKVAEATKKVEEAEKKAKDQKEEdRRNYPTNTYKTLELEIAESDVEVKKAELELVKEEakePR 201

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 437 RKQQLVELGLLREEEKQRATREHEIVVNKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEK----------EYTQK 506
Cdd:NF033838 202 DEEKIKQAKAKVESKKAEATRLEKIKTDREKAEEEAKRRADAKLKEAVEKNVATSEQDKPKRRAKrgvlgepatpDKKEN 281

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 507 LAKSSQIIAELQTTIS-SLKEEnsQQQLAAERRLQDVRQKFEDEKKQLIRD-NDQAIKVLQDELENRSNQVRCAEKKL-- 582
Cdd:NF033838 282 DAKSSDSSVGEETLPSpSLKPE--KKVAEAEKKVEEAKKKAKDQKEEDRRNyPTNTYKTLELEIAESDVKVKEAELELvk 359

                        330       340
                 ....*....|....*....|...
gi 530411724 583 -QHKELESQEQITYIRQEYETKL 604
Cdd:NF033838 360 eEAKEPRNEEKIKQAKAKVESKK 382
COG5022 COG5022
Myosin heavy chain [General function prediction only];
2-235 1.65e-03

Myosin heavy chain [General function prediction only];


Pssm-ID: 227355 [Multi-domain]  Cd Length: 1463  Bit Score: 41.60  E-value: 1.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724    2 KLKRLLESLKRKTLIRDCQVIRETKEDQIAELKkiceQSTESLNNdwekkLHNAVAEMEQEKFDLQKQHTENIQ---ELL 78
Cdd:COG5022   856 KAKKRFSLLKKETIYLQSAQRVELAERQLQELK----IDVKSISS-----LKLVNLELESEIIELKKSLSSDLIenlEFK 926

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   79 EDTNVRLNKMESEYMAQTQSTNHMIK-ELEARVQQLTGEAENSNLQRQKLIQEKAELERCYQITCSELQEVKARRNTLHK 157
Cdd:COG5022   927 TELIARLKKLLNNIDLEEGPSIEYVKlPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSK 1006

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724  158 EKDHLVNDYEQ--NMKLLQTKYDADINLLKQEHALSASKASS--MIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQM 233
Cdd:COG5022  1007 QYGALQESTKQlkELPVEVAELQSASKIISSESTELSILKPLqkLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQL 1086


                  ..
gi 530411724  234 EK 235
Cdd:COG5022  1087 ES 1088
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
 83-385 1.76e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 41.58  E-value: 1.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724    83 VRLNKMESEYMAQTQSTNHMIKELEARVQQLTGEAENSNLQRQKLIQEKAELErcyqitcSELQEVKARRNTLHKEKDHl 162
Cdd:TIGR02168  235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ-------KELYALANEISRLEQQKQI- 306

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   163 vndYEQNMKLLQTKYDadinllkqehalsaskassMIEELEQNVCQLKQQLQESELQRKQQLRDQENKFQMEKSHLkhiy 242
Cdd:TIGR02168  307 ---LRERLANLERQLE-------------------ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL---- 360

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   243 eKKAHDLQSELDKGKEDTQKKIHKFEEALKEKEEQLtrvtEVQRLQAQQADAALEEFKRQVELNSEKVYAEMKEQMEKVE 322
Cdd:TIGR02168  361 -EELEAELEELESRLEELEEQLETLRSKVAQLELQI----ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 530411724   323 ADLTRSKSLREKQSKEFLWQLEDIRQRYE--QQIVELKLEHEQEKTHLLQQHNAEKDSLVRDHER 385
Cdd:TIGR02168  436 KELQAELEELEEELEELQEELERLEEALEelREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
417-647 1.95e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 41.16  E-value: 1.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 417 ADMEAQVHKLREELiNVNSQRKQQLVELGLlREEEKQRATReheiVVNKLKAESEKMKIELKKTHAAET----EMTLEKA 492
Cdd:COG3206  114 ASREAAIERLRKNL-TVEPVKGSNVIEISY-TSPDPELAAA----VANALAEAYLEQNLELRREEARKAleflEEQLPEL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 493 NSKLKQIEKEYTQKLAKSSQIIAELQTTISSLK-EENSQQQLAAERRLQDVRQKFEDEKKQLIRDNDQAIKVLQD-ELEN 570
Cdd:COG3206  188 RKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpVIQQ 267

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 530411724 571 RSNQVRCAEKKLQhkELESQEQITYIR-QEYETKLKGLMpASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQGR 647
Cdd:COG3206  268 LRAQLAELEAELA--ELSARYTPNHPDvIALRAQIAALR-AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
 369-644 2.18e-03

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 41.21  E-value: 2.18e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   369 LQQHNAEKDSLVRDHE------REIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREelinvnSQRKQQLV 442
Cdd:TIGR02169  676 LQRLRERLEGLKRELSslqselRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE------LEEDLSSL 749

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   443 ELGLLREEEKQRatreheivvnKLKAESEKMKIELKKTHAAETEMTLEKANSKLKQIEKEYTQKLAKSSQIIAELQTTIS 522
Cdd:TIGR02169  750 EQEIENVKSELK----------ELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   523 SLKEENSQQQLAAERRlqdvrqkfeDEKKQLIRDNDQAIKVLQDELEN-----RSNQVRCAEKKLQHKELESQ-EQITYI 596
Cdd:TIGR02169  820 KLNRLTLEKEYLEKEI---------QELQEQRIDLKEQIKSIEKEIENlngkkEELEEELEELEAALRDLESRlGDLKKE 890

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 530411724   597 RQEYETKLKGLMPAslRQELEDTISSLKSQVNFLQKRASILQEELTTY 644
Cdd:TIGR02169  891 RDELEAQLRELERK--IEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 384-645 2.24e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 41.08  E-value: 2.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 384 EREIENLEKQLRAAnMEHENQIQEFKKRDAQVIAdmeAQVHKLREELINVNSQRKQQLVELgllREEEKQRATREHEIVV 463
Cdd:COG1196  199 ERQLEPLERQAEKA-ERYRELKEELKELEAELLL---LKLRELEAELEELEAELEELEAEL---EELEAELAELEAELEE 271

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 464 NKLKAESEKMKIELKKTHAAETEMTLEKANSKL---KQIEKEYTQKLAKSSQIIAELQTTISSLKE---ENSQQQLAAER 537
Cdd:COG1196  272 LRLELEELELELEEAQAEEYELLAELARLEQDIarlEERRRELEERLEELEEELAELEEELEELEEeleELEEELEEAEE 351

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 538 RLQDVRQKFEDEKKQLIRDNDQAIKVLQDELENRSNQvrcAEKKLQHKELESQEQITYIRQEYETKLKGLMPASLRQELE 617
Cdd:COG1196  352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL---LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428

                        250       260
                 ....*....|....*....|....*...
gi 530411724 618 DTISSLKSQVNFLQKRASILQEELTTYQ 645
Cdd:COG1196  429 ALAELEEEEEEEEEALEEAAEEEAELEE 456
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
 296-504 4.16e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 40.30  E-value: 4.16e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 296 LEEFKRQVELNSEKVYAEMKEQMEKVEadltrskslrekqskeflwQLEDIRQRYEQQIVELK--------LEHEQEKTH 367
Cdd:PRK05771  84 LEELIKDVEEELEKIEKEIKELEEEIS-------------------ELENEIKELEQEIERLEpwgnfdldLSLLLGFKY 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 368 LlqqhnaekdsLVRDHEREIENLEKQLRAANMEHENQIQEFKKRDAQVIADMEAQVHKLREELiNVNSQRKQQLVELGLL 447
Cdd:PRK05771 145 V----------SVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEEL-KKLGFERLELEEEGTP 213

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 530411724 448 RE------EEKQRATREHEIVVNKLKAESEKMKIELKKTHaAETEMTLEKANSKLKQIEKEYT 504
Cdd:PRK05771 214 SElireikEELEEIEKERESLLEELKELAKKYLEELLALY-EYLEIELERAEALSKFLKTDKT 275
PRK05771 PRK05771
V-type ATP synthase subunit I; Validated
 437-645 4.73e-03

V-type ATP synthase subunit I; Validated


Pssm-ID: 235600 [Multi-domain]  Cd Length: 646  Bit Score: 39.91  E-value: 4.73e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 437 RKQQLVELGLLREEEK----QRATREHEIV---VNKLKAESEKMKI---ELKKTHAAETEMTLEKANSKLKQIEKEYTQK 506
Cdd:PRK05771  26 HELGVVHIEDLKEELSnerlRKLRSLLTKLseaLDKLRSYLPKLNPlreEKKKVSVKSLEELIKDVEEELEKIEKEIKEL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724 507 LAKssqiIAELQTTISSLKEENSQQQ--------LAAERRLQDVRQKF----EDEKKQLIRDNDQAIKVLQDELENRSNQ 574
Cdd:PRK05771 106 EEE----ISELENEIKELEQEIERLEpwgnfdldLSLLLGFKYVSVFVgtvpEDKLEELKLESDVENVEYISTDKGYVYV 181

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 530411724 575 VRCAEKKLQHKELESQEQITYIRQEYETKLKglmPASLRQELEDTISSLKSQVNFLQKRASILQEELTTYQ 645
Cdd:PRK05771 182 VVVVLKELSDEVEEELKKLGFERLELEEEGT---PSELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
 27-643 5.45e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 40.10  E-value: 5.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724    27 EDQIAELKKICEQSTESLNNDWEKKLHNAVAEME------QEKFDLQKQHTENIQELLEDTNVRLNKMESEYMAQtqstn 100
Cdd:pfam15921  244 EDQLEALKSESQNKIELLLQQHQDRIEQLISEHEveitglTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQ----- 318

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   101 hmIKELEARVQQLTGEAENSNLQRQKLIQEkaeLERCYQITCSELQEVKARRNTLHKEKDHLvndYEQNMKLLqtkydAD 180
Cdd:pfam15921  319 --LSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQESGNL---DDQLQKLL-----AD 385

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   181 INLLKQEHALSASKASSMIEELEQNVCQLKQQLQESElQRKQQLRDQENKFQMEKSHLKHIYEKKAHDLQseldkGKEDT 260
Cdd:pfam15921  386 LHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD-DRNMEVQRLEALLKAMKSECQGQMERQMAAIQ-----GKNES 459

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   261 QKKIHKFEEALKEKEEQLTRVTEvqrlqaqqadaaleefkrqvELNSEKVYAEmkeQMEKVEADLTRSKSLREKQSKEFL 340
Cdd:pfam15921  460 LEKVSSLTAQLESTKEMLRKVVE--------------------ELTAKKMTLE---SSERTVSDLTASLQEKERAIEATN 516

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   341 WQLEDIRQRYEQQIVELK--------LEHEQEKTHLLQQHNAEKDSLVRDHEREIENLekqlraanmehenqiQEFKKRD 412
Cdd:pfam15921  517 AEITKLRSRVDLKLQELQhlknegdhLRNVQTECEALKLQMAEKDKVIEILRQQIENM---------------TQLVGQH 581

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   413 AQVIADMEAQVHKLREELinvnSQRKQQLVELGLLREEeKQRATREHEIVVNKLKAESEKmkielkkthaaetemtLEKA 492
Cdd:pfam15921  582 GRTAGAMQVEKAQLEKEI----NDRRLELQEFKILKDK-KDAKIRELEARVSDLELEKVK----------------LVNA 640

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 530411724   493 NSKLKQIEKEYTQKlakSSQIIAELQTTISSLKEENSQQQLAaERRLQDVRQKFEDEKKQLirdnDQAIKVLQDELENRS 572
Cdd:pfam15921  641 GSERLRAVKDIKQE---RDQLLNEVKTSRNELNSLSEDYEVL-KRNFRNKSEEMETTTNKL----KMQLKSAQSELEQTR 712

                          570       580       590       600       610       620       630
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 530411724   573 NQVRCAEKKLQHK---ELESQEQITYIRQEYETKlkglmpASLRQELEDTISSLKSQVNFLQKRASILQEELTT 643
Cdd:pfam15921  713 NTLKSMEGSDGHAmkvAMGMQKQITAKRGQIDAL------QSKIQFLEEAMTNANKEKHFLKEEKNKLSQELST 780
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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