|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
202-963 |
5.97e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 99.75 E-value: 5.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 202 LQVADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRAldggrphdVISLEAQNISNEKLIAHLNLQIE 281
Cdd:TIGR02168 227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLE--------VSELEEEIEELQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 282 YLQETNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLEKDKEMVLEtadmELQEAKKAIQRQQREL 361
Cdd:TIGR02168 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA----ELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 362 EGQEEVISTLRRDMAdgdhvkdQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDKEMVLELERMRARHGMC 441
Cdd:TIGR02168 375 EELEEQLETLRSKVA-------QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEE 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 442 GKDHSPSRLDAFVKSLEEERNYYREEVERYRLVRGRTDRSPTPVGRGRSPRGRGS---------WHGKRDGDAELSRVVk 512
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkalLKNQSGLSGILGVLS- 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 513 erdELQSVLLGFEKHME-DIQTRVKLLTAERDQLSSQCQQA--QEELRRV---------QRELESSELQRR--------I 572
Cdd:TIGR02168 527 ---ELISVDEGYEAAIEaALGGRLQAVVVENLNAAKKAIAFlkQNELGRVtflpldsikGTEIQGNDREILkniegflgV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 573 RDDREQTEAELQRVTaerDALRDRLKVAHS--TALTDREQEEFRFL---------------------------------- 616
Cdd:TIGR02168 604 AKDLVKFDPKLRKAL---SYLLGGVLVVDDldNALELAKKLRPGYRivtldgdlvrpggvitggsaktnssilerrreie 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 617 DLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKT 696
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 697 NELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRLTV 776
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 777 TDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDEL 856
Cdd:TIGR02168 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEEL 920
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 857 KLRVHSYISEVARIEslmaAKEQENRDMLerfrsihteSEDKELKLQQSEGLNNSIrlellssDTERRHLRERVSLQDRE 936
Cdd:TIGR02168 921 REKLAQLELRLEGLE----VRIDNLQERL---------SEEYSLTLEEAEALENKI-------EDDEEEARRRLKRLENK 980
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 528511429 937 IQE----HLNALQAYE----------AQVSSLARAMSRLEE 963
Cdd:TIGR02168 981 IKElgpvNLAAIEEYEelkerydfltAQKEDLTEAKETLEE 1021
|
|
| cc_Cep135_MBD |
cd22292 |
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar ... |
83-144 |
8.04e-19 |
|
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar proteins; Cep135, also called centrosomal protein 4, is involved in early centriole assembly, duplication, biogenesis, and formation. It is required for the recruitment of CEP295 to the proximal end of new-born centrioles at the centriolar microtubule wall during early S phase in a PLK4-dependent manner. This model corresponds to a conserved coiled-coil domain of Cep135, which is critical for microtubule binding.
Pssm-ID: 412088 [Multi-domain] Cd Length: 62 Bit Score: 81.46 E-value: 8.04e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528511429 83 ENNEMHLGLLKLREEKDRISRELKAYIRKLDHETSDLKFLNNQYVQKVRSLEKDSNGKTERI 144
Cdd:cd22292 1 ENNELHLELIKLKEESDAKIKDLKSSLRKLEHENADLRFLNSQYLHKIKVLEKESKAKSEKI 62
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
577-1122 |
2.51e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.68 E-value: 2.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 577 EQTEAELQRVTAERDALRDRLKvahstALT-DREQEEfRFLDLENTIEKLEREKADLRAQVtvLKESRVVVEKELKAQSA 655
Cdd:COG1196 182 EATEENLERLEDILGELERQLE-----PLErQAEKAE-RYRELKEELKELEAELLLLKLRE--LEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 656 VLLQNVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADlsrhgssqkdevviLQNTIA 735
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE--------------LEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 736 SLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVS 815
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 816 RDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLERFRSIHTES 895
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 896 EDKELKLQQSEGLNNSI-----RLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQV-SSLARAMSRLEEEVQAAR 969
Cdd:COG1196 480 AELLEELAEAAARLLLLleaeaDYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALeAALAAALQNIVVEDDEVA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 970 AEKASVLADLASVRELCVKLDSSKELTVRQLTSKSMELERVTGELEDVRSEMELLKKQLGSErLTVRNLETLLSTNRQKE 1049
Cdd:COG1196 560 AAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT-LLGRTLVAARLEAALRR 638
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528511429 1050 FQTHIsasEKESELKVLKDRLALADSKTAGHAREVSQLRGKVSQLQTEMDVLKRQLTTERFERERAVQEMRRQ 1122
Cdd:COG1196 639 AVTLA---GRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
79-889 |
5.81e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.65 E-value: 5.81e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 79 RLVKENNEMHLGLLKLR-----EEKDRISRELKAYIRKLDHETSDLKFLNNQYVQKvrsleKDSNGKTERILQLQEKNMQ 153
Cdd:TIGR02168 217 ELKAELRELELALLVLRleelrEELEELQEELKEAEEELEELTAELQELEEKLEEL-----RLEVSELEEEIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 154 AVVQTPGGKKRSIPFRRQRMQTDELLPSSGGYVPPAVAQPDDPYIADLLQVADdRIQELQKEVAQLKLDLERAQGGIKHL 233
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE-KLEELKEELESLEAELEELEAELEEL 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 234 NKQVEERDKEIERLNRALDGGRpHDVISLEAQNISNEKLIAHLNLQIEYLQETNRSLEQRVDSLQqkKKTVSSEVADLsa 313
Cdd:TIGR02168 371 ESRLEELEEQLETLRSKVAQLE-LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEEL-- 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 314 rNQELCQELTQIDQLAQQLEKDKEMvLETADMELQEAKKAIQRQQRELEGQEEVistLRRDMADGDHVKDQLRNQ----- 388
Cdd:TIGR02168 446 -EEELEELQEELERLEEALEELREE-LEEAEQALDAAERELAQLQARLDSLERL---QENLEGFSEGVKALLKNQsglsg 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 389 ----LLDLQDQNNKME---------GLIHFLEEDKKRLQDKIEAMMQED--KEMVLELERMRARHGMCGKDHSPSRLDAF 453
Cdd:TIGR02168 521 ilgvLSELISVDEGYEaaieaalggRLQAVVVENLNAAKKAIAFLKQNElgRVTFLPLDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 454 VKSLEEERNYYRE--EVERYRLVRGRTDRSPTPVGRGRSPRGRGSWHGKRDGDAELSR--VVKERDELQSVLLGFEKHME 529
Cdd:TIGR02168 601 LGVAKDLVKFDPKlrKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGgvITGGSAKTNSSILERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 530 DIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQ-RRIRDDREQTEAELQRVTAERdalrdrlkvahstaltdr 608
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKElEELSRQISALRKDLARLEAEV------------------ 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 609 EQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQEQMEQSLSDV 688
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 689 QHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEET 768
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 769 LLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEEL---------------FSVSRDREVALRENRRLQDDLA 833
Cdd:TIGR02168 903 LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLseeysltleeaealeNKIEDDEEEARRRLKRLENKIK 982
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 528511429 834 TMTRENQAVHAEMQEALNERDELKlrvhSYISEVAR-IESLMAAKEQENRDMLERFR 889
Cdd:TIGR02168 983 ELGPVNLAAIEEYEELKERYDFLT----AQKEDLTEaKETLEEAIEEIDREARERFK 1035
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
533-1105 |
1.28e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 85.37 E-value: 1.28e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 533 TRVKLLTAE----RDQLSSQCQQA------QEELRRVQRELESSELqRRIRDDREQTEAELQRVTAERDALR---DRLKV 599
Cdd:COG1196 189 ERLEDILGElerqLEPLERQAEKAeryrelKEELKELEAELLLLKL-RELEAELEELEAELEELEAELEELEaelAELEA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 600 AHSTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQE 679
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 680 QMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQ 759
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 760 QEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQDDLATMTREN 839
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 840 QAVHAEMQEALNERDELKLRVHSYISEVAR--IESLMAAKEQEnrdmlerfrsIHTESEDKELKLQQSEGLNNSIRLELL 917
Cdd:COG1196 508 EGVKAALLLAGLRGLAGAVAVLIGVEAAYEaaLEAALAAALQN----------IVVEDDEVAAAAIEYLKAAKAGRATFL 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 918 SSDTERRHLRERVSLQDREIQEHLNALQ--AYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELCVKLD----- 990
Cdd:COG1196 578 PLDKIRARAALAAALARGAIGAAVDLVAsdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEgeggs 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 991 SSKELTVRQLTSKSMELERVTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKEFQTHISASEKESELKVLKDRL 1070
Cdd:COG1196 658 AGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREEL 737
|
570 580 590
....*....|....*....|....*....|....*....
gi 528511429 1071 ALADSKTAGHAREVSQLRG----KVSQLQTEMDVLKRQL 1105
Cdd:COG1196 738 LEELLEEEELLEEEALEELpeppDLEELERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
534-1094 |
5.03e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.45 E-value: 5.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 534 RVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQRRIRDDR-EQTEAELQRVTAERDALRDRLKVAHSTALT---DRE 609
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAElEELRLELEELELELEEAQAEEYELLAELARleqDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 610 QEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQEQMEQSLSDVQ 689
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 690 HRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETL 769
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELL 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 770 LEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALRenRRLQDDLATMTRENQAVHAEMQEA 849
Cdd:COG1196 466 AELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL--RGLAGAVAVLIGVEAAYEAALEAA 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 850 LNERDELKLRVHSyisEVARIESLMAAKEQENRDMLERFRSIHTESEDKELKLQQSEGLNNSIRLELLSSDTERRHLRER 929
Cdd:COG1196 544 LAAALQNIVVEDD---EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 930 VSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELCVKLDSSKELTVRQLTSKSMELER 1009
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 1010 VTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKEFQthisASEKESELKVLKDRLALADSKTAghAREVSQLRG 1089
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL----EEEELLEEEALEELPEPPDLEEL--ERELERLER 774
|
....*
gi 528511429 1090 KVSQL 1094
Cdd:COG1196 775 EIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
504-1028 |
8.59e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.68 E-value: 8.59e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 504 DAELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQ-RRIRDDREQTEAE 582
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDiARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 583 LQRVTAERDALRDRLKVAH---STALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQ 659
Cdd:COG1196 318 LEELEEELAELEEELEELEeelEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 660 NVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDR 739
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 740 EKDTLQDAVDQKtESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSRERE-------IASLRRQLDQSQEELF 812
Cdd:COG1196 478 ALAELLEELAEA-AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEaayeaalEAALAAALQNIVVEDD 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 813 SVSRDREVALRENR-------RLQDDLATMTRENQAVHAEMQEALNERDELkLRVHSYISEVARIESLMAAKEQENRDM- 884
Cdd:COG1196 557 EVAAAAIEYLKAAKagratflPLDKIRARAALAAALARGAIGAAVDLVASD-LREADARYYVLGDTLLGRTLVAARLEAa 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 885 LERFRSIHTESEDKELKLQQSEGLNNSIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEE 964
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528511429 965 VQAARAEKASVLADLASVRELCVKLDSSKELTVRQLTSKSMELErvtGELEDVRSEMELLKKQL 1028
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP---PDLEELERELERLEREI 776
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
288-1106 |
1.40e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.41 E-value: 1.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 288 RSLEQRVDSLQQKkktvssevADLSARNQELCQELTQIDQLAQQLE-KDKEMVLETADMELQEAKKAIQRQQRELEGQEE 366
Cdd:TIGR02168 196 NELERQLKSLERQ--------AEKAERYKELKAELRELELALLVLRlEELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 367 VISTLRRDMAdgdhvkdQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDKEMVLELErmrarhgmcgkdHS 446
Cdd:TIGR02168 268 KLEELRLEVS-------ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE------------EL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 447 PSRLDAFVKSLEEERNYYREEVERYRLVRgrtdrsptpvgrgrsprgrgswhgkrdgdAELSRVVKERDELQSVLLGFEK 526
Cdd:TIGR02168 329 ESKLDELAEELAELEEKLEELKEELESLE-----------------------------AELEELEAELEELESRLEELEE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 527 HMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELE--SSELQRRIRDDREQTEAELQRVTAERDALRDRLKVAHSTA 604
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRErlQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 605 LTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLlQEQMEQS 684
Cdd:TIGR02168 460 EEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISV-DEGYEAA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 685 LSDV--QHRLSVKTNELQAAHQQIDKLEEKiadlSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEV 762
Cdd:TIGR02168 539 IEAAlgGRLQAVVVENLNAAKKAIAFLKQN----ELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 763 HRKEETLLEVRLTVTDLENSLNQL------------------------------QAVLSSREREIASLRRQLDQSQEELF 812
Cdd:TIGR02168 615 RKALSYLLGGVLVVDDLDNALELAkklrpgyrivtldgdlvrpggvitggsaktNSSILERRREIEELEEKIEELEEKIA 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 813 SVSRDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLERFRSIH 892
Cdd:TIGR02168 695 ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 893 TESEDKELKLQQSEGLNNSIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEK 972
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 973 ASVLADLASVRELCVKLDSskeltvrQLTSKSMELERVTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKEFQT 1052
Cdd:TIGR02168 855 ESLAAEIEELEELIEELES-------ELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 528511429 1053 HISASEKESELKVLKDRLALADSKTAGHA-REVSQLRGKVSQLQTEMDVLKRQLT 1106
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTLEEAeALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
504-1024 |
2.71e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.14 E-value: 2.71e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 504 DAELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQRR-IRDDREQTEAE 582
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAeLEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 583 LQRVTAERDALRDRLKvahsTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVE 662
Cdd:COG1196 339 LEELEEELEEAEEELE----EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 663 EATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKD 742
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 743 TLQDAVDQKT--ESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRD-RE 819
Cdd:COG1196 495 LLLEAEADYEgfLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgRA 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 820 VALRENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLERFRSIHTESEDKE 899
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 900 LKLQQSEGLNNSIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADL 979
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 528511429 980 ASVRELCVKLDSSKELTVRQLTSKSMELERVTGELEDVRSEMELL 1024
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
202-716 |
2.71e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 2.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 202 LQVADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDGGRpHDVISLEAQNISNEKLIAHLNLQIE 281
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL-AELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 282 YLQETNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLEKDKEMVLETADMELQEAKKAIQRQQREL 361
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 362 EGQEEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDKEMVLELERMRARHgmc 441
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE--- 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 442 gkdhspSRLDAFVKSLEEERNYYREEVERYRLVRGRTDRSPTPVGRGRSPRGRGSWHGKRDGDAELSRVVKERDE--LQS 519
Cdd:COG1196 477 ------AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAaaLQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 520 VLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQRRIRDDREQTEAELQRVTAERDALRDRLKV 599
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 600 AHSTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQE 679
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490 500 510
....*....|....*....|....*....|....*..
gi 528511429 680 QMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADL 716
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
202-789 |
7.47e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 7.47e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 202 LQVADDRIQELQKEVAQLK------------------LDLERAQGGIKHLNKQVEERDKEIERLNRALDGGRpHDVISLE 263
Cdd:COG1196 188 LERLEDILGELERQLEPLErqaekaeryrelkeelkeLEAELLLLKLRELEAELEELEAELEELEAELEELE-AELAELE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 264 AQNISNEKLIAHLNLQIEYLQETNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLE---------- 333
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEeeleeleeel 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 334 KDKEMVLETADMELQEAKKAIQRQQRELEGQEEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRL 413
Cdd:COG1196 347 EEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 414 QDKIEAMMQEDKEMVLELERMRARHgmcgkdhspSRLDAFVKSLEEERNYYREEVERYRLVRGRTDRSPTPVGRGRSPRG 493
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEE---------AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 494 RGswhgkRDGDAELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQRRI- 572
Cdd:COG1196 498 EA-----EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAg 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 573 RDDREQTEAELQRVTAERDALRDRLKVAHSTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKA 652
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLE 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 653 QSAVLLQNVEEATQQRVESSALRLLQEQMEQslsdVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQN 732
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEE----LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 528511429 733 TIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEvrlTVTDLENSLNQLQAV 789
Cdd:COG1196 729 QLEAEREELLEELLEEEELLEEEALEELPEPPDLEELER---ELERLEREIEALGPV 782
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
501-1122 |
1.42e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 1.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 501 RDGDAELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQR--------RI 572
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLeeleskldEL 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 573 RDDREQTEAELQRVTAERDALRDRLKVAHStaltDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKA 652
Cdd:TIGR02168 336 AEELAELEEKLEELKEELESLEAELEELEA----ELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 653 QSAVLLQNVEEATQQRVESSALRLLQEQM-----EQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSR---HGSSQK 724
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAeleelEEELEELQEELERLEEALEELREELEEAEQALDAAERelaQLQARL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 725 DEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKE------ETLLEVRLT--VTDLENSLNQLQAVL------ 790
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEgyeaaiEAALGGRLQavVVENLNAAKKAIAFLkqnelg 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 791 --------SSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQDDLATmtreNQAVHAEMQEALNERDELK--LRV 860
Cdd:TIGR02168 572 rvtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLG----GVLVVDDLDNALELAKKLRpgYRI 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 861 HSYISEVARIESLMA-AKEQENRDMLERFRSIhtesEDKELKLQQSEGLNNSIRLELLSSDTERRHLRERVSLQDREIQE 939
Cdd:TIGR02168 648 VTLDGDLVRPGGVITgGSAKTNSSILERRREI----EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE 723
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 940 hlnalqaYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELCVKLDSSKELTVRQLTSKSMELERVTGELEDVRS 1019
Cdd:TIGR02168 724 -------LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 1020 EMELLKKQLGSERLTVRNLETLLSTNRQKEFQTHISASEKESELKVLKDRLALAdsktaghAREVSQLRGKVSQLQTEMD 1099
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL-------SEDIESLAAEIEELEELIE 869
|
650 660
....*....|....*....|...
gi 528511429 1100 VLKRQLTTERFERERAVQEMRRQ 1122
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALL 892
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
550-1119 |
2.62e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 550 QQAQEELRRVQRELESSElqrrirDDREQTEAELQRVTAERDALRDRLKVAHSTAltdrEQEEFRFLDLENTIEKLEREK 629
Cdd:TIGR02168 235 EELREELEELQEELKEAE------EELEELTAELQELEEKLEELRLEVSELEEEI----EELQKELYALANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 630 AdlraqvtVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKL 709
Cdd:TIGR02168 305 Q-------ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 710 EEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEetLLEVRLTVTDLENSLNQLQAV 789
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 790 LSSREREIASLRRQLDQSQEELFSVSRDrevaLRENRRLQDDLATMTRENQAVHAEMQEALNERDELKL---RVHSYISE 866
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERE----LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgVLSELISV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 867 VARIESLMAAKEQENRDMLErfrsihTESEDKELKLQQSeglnnsirleLLSSDTERRHLRERVSLQDREIQ-EHLNALQ 945
Cdd:TIGR02168 532 DEGYEAAIEAALGGRLQAVV------VENLNAAKKAIAF----------LKQNELGRVTFLPLDSIKGTEIQgNDREILK 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 946 AYEAQVSSLaramSRLEEEVQAARAEKASVLADLASVRELCVKLDSSKEL--------------------------TVRQ 999
Cdd:TIGR02168 596 NIEGFLGVA----KDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLrpgyrivtldgdlvrpggvitggsakTNSS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 1000 LTSKSMELERVTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKEFqthisasEKESELKVLKDRLALADSKTAG 1079
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE-------ELSRQISALRKDLARLEAEVEQ 744
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 528511429 1080 HAREVSQLRGKVSQLQTEMDVLKRQLTTERFERERAVQEM 1119
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
346-950 |
2.14e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 2.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 346 ELQEAKKAIQRQQRELEGQEEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDK 425
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 426 EMVLELERMRARhgmcgKDHSPSRLDAFVKSLEEERNYYREEVERYRLVRGRTDRSptpvgrgrsprgrgswhgkrdgDA 505
Cdd:COG1196 313 ELEERLEELEEE-----LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA----------------------EE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 506 ELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQRRirdDREQTEAELQR 585
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA---ELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 586 VTAERDALRDRLKVAHSTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKEsrVVVEKELKAQSAVLLQNVEEAT 665
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE--AEADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 666 QQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDevVILQNTIASLDREKDTLQ 745
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLD--KIRARAALAAALARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 746 DAVDQKTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALREN 825
Cdd:COG1196 599 AAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 826 RRLQDDLATMTRENQAVHAEMQEALNERDELKLRvhsyisevarieslMAAKEQENRDMLERFRSIHTESEDKELKLQQS 905
Cdd:COG1196 679 AELEELAERLAEEELELEEALLAEEEEERELAEA--------------EEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 528511429 906 EGLNNSIRLELLSSDTERRHLRERVSLQDREIQEH----LNALQAYEAQ 950
Cdd:COG1196 745 EELLEEEALEELPEPPDLEELERELERLEREIEALgpvnLLAIEEYEEL 793
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
198-750 |
4.56e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 4.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 198 IADLLQVADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDgGRPHDVISLEAQNISNEKLIAHLN 277
Cdd:COG1196 279 LELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE-ELEEELEELEEELEEAEEELEEAE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 278 LQIEYLQETNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLEKDKEMVLETADMELQEAKKAIQRQ 357
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 358 QRELEGQEEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAM--MQEDKEMVLELERMR 435
Cdd:COG1196 438 EEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEadYEGFLEGVKAALLLA 517
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 436 ARHGMCGKDHS------------PSRLDAFVKSLEEERNYYREEVERY--RLVRGRTDRSPTPVGRGRSPRGRGSWHGKR 501
Cdd:COG1196 518 GLRGLAGAVAVligveaayeaalEAALAAALQNIVVEDDEVAAAAIEYlkAAKAGRATFLPLDKIRARAALAAALARGAI 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 502 DGDAELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQRRIRDDREQTEA 581
Cdd:COG1196 598 GAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEA 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 582 ELQRVTAERDALRDRLKvAHSTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNV 661
Cdd:COG1196 678 EAELEELAERLAEEELE-LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEEL 756
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 662 EEATQQRVESSALRLLQEQMEQsLSDVqhrlsvktN-----ELQAAHQQIDKLEEKIADLSrhgSSQKDevviLQNTIAS 736
Cdd:COG1196 757 PEPPDLEELERELERLEREIEA-LGPV--------NllaieEYEELEERYDFLSEQREDLE---EARET----LEEAIEE 820
|
570
....*....|....*
gi 528511429 737 LDRE-KDTLQDAVDQ 750
Cdd:COG1196 821 IDREtRERFLETFDA 835
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
206-1017 |
1.33e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 1.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 206 DDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRaldggrpHDVISLEAQNISNEKLIAhlnlQIEYLQE 285
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER-------YQALLKEKREYEGYELLK----EKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 286 TNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELtqiDQLAQQLEKDKEmvletadmelqEAKKAIQRQQRELEGQe 365
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLL---EELNKKIKDLGE-----------EEQLRVKEKIGELEAE- 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 366 evISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDKEMVLELERMRARHGMCGKDH 445
Cdd:TIGR02169 303 --IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 446 SPSRldafVKSLEEERNYYREEVERYRLVRGRTDRSPTPVGRGRSPrgrgswhgkRDGDAELSRVVKERDELQSVLLGFE 525
Cdd:TIGR02169 381 AETR----DELKDYREKLEKLKREINELKRELDRLQEELQRLSEEL---------ADLNAAIAGIEAKINELEEEKEDKA 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 526 KHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQRRIRDDREQTEAELQRVT-AERDALRDRLKVAHSTA 604
Cdd:TIGR02169 448 LEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGrAVEEVLKASIQGVHGTV 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 605 LTDREQEEFRFLDLE-------------------NTIEKLEREKA------------DLRAQVTVLKESRVV------VE 647
Cdd:TIGR02169 528 AQLGSVGERYATAIEvaagnrlnnvvveddavakEAIELLKRRKAgratflplnkmrDERRDLSILSEDGVIgfavdlVE 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 648 KELKAQSAV--------LLQNVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAhqqidKLEEKIADLSRH 719
Cdd:TIGR02169 608 FDPKYEPAFkyvfgdtlVVEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSR-----SEPAELQRLRER 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 720 GSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIAS 799
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 800 LRRQLDQSQEELFSV--------SRDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDELKlrvhsyisevARIE 871
Cdd:TIGR02169 763 LEARIEELEEDLHKLeealndleARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK----------EYLE 832
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 872 SLMAAKEQENRDMLERFRSIHTESEDKELKLQQSEGLNNSIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQV 951
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528511429 952 SSLARAMSRLEEEVQAARAEKASVLADLASVRElcvklDSSKELTVRQLTSKSMELERVTGELEDV 1017
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALEEELSEIEDPKGEDEE-----IPEEELSLEDVQAELQRVEEEIRALEPV 973
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
574-799 |
8.48e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.09 E-value: 8.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 574 DDREQTEAELQRVTAERDALRDRLKVA---HSTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKEL 650
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALkkeEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 651 KAQSAVLLQNVEEAtQQRVESSALRLLQEQmeQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVIL 730
Cdd:COG4942 100 EAQKEELAELLRAL-YRLGRQPPLALLLSP--EDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528511429 731 QNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIAS 799
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
325-1071 |
2.74e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 2.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 325 IDQLAQQLEKDKEmvletaDMELQEAKKAIQRQQRELEGQEEV--ISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEGL 402
Cdd:TIGR02169 193 IDEKRQQLERLRR------EREKAERYQALLKEKREYEGYELLkeKEALERQKEAIERQLASLEEELEKLTEEISELEKR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 403 IHFLEEDKKRLQDKIEAMMQEdkEMVLELERMRARHGmcgkdhSPSRLDAFVKSLEEERNYYREEVERYRLVRGRTDRSp 482
Cdd:TIGR02169 267 LEEIEQLLEELNKKIKDLGEE--EQLRVKEKIGELEA------EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE- 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 483 tpvgrgrsprgrgswhgKRDGDAELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRE 562
Cdd:TIGR02169 338 -----------------IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 563 LESS--------ELQRRIRDDREQTEAELQRVTAERDALRDRLKVAH----------STALTDREQEEFRFLDLENTIEK 624
Cdd:TIGR02169 401 INELkreldrlqEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAleikkqewklEQLAADLSKYEQELYDLKEEYDR 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 625 LEREKADLRAQVTVLKESRVVVEKELKAQSAVL----------------LQNVEEATQQRVESSALRLLQEQMEQSLSDV 688
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARASEERVRGGRAVEevlkasiqgvhgtvaqLGSVGERYATAIEVAAGNRLNNVVVEDDAVA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 689 --------QHRLSVKT----NELQAAHQQIDKLEEKIA-----DLSRHGSSQKDEVV-ILQNTIA--SLDREKD------ 742
Cdd:TIGR02169 561 keaiellkRRKAGRATflplNKMRDERRDLSILSEDGVigfavDLVEFDPKYEPAFKyVFGDTLVveDIEAARRlmgkyr 640
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 743 --TLQDAVDQKTESVV-------LLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFS 813
Cdd:TIGR02169 641 mvTLEGELFEKSGAMTggsraprGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 814 VSRDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDmlERFRSIHT 893
Cdd:TIGR02169 721 IEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQA 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 894 ESEDKELKLQQSEGlnnsiRLELLSSDTERRHLRERvsLQDREIQEHLNALQAYEAQVSSLARAmsrlEEEVQAARAEKA 973
Cdd:TIGR02169 799 ELSKLEEEVSRIEA-----RLREIEQKLNRLTLEKE--YLEKEIQELQEQRIDLKEQIKSIEKE----IENLNGKKEELE 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 974 SVLADlasvrelcvkldssKELTVRQLTSksmelervtgELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKEFQTH 1053
Cdd:TIGR02169 868 EELEE--------------LEAALRDLES----------RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923
|
810
....*....|....*...
gi 528511429 1054 ISASEKESELKVLKDRLA 1071
Cdd:TIGR02169 924 AKLEALEEELSEIEDPKG 941
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
567-918 |
1.33e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 567 ELQRRIRDdreqTEAELQRVTAERDALRDRLKVAHSTAltdrEQEEfRFLDLENTIEKLEREKADLRaqVTVLKESRVVV 646
Cdd:TIGR02168 176 ETERKLER----TRENLDRLEDILNELERQLKSLERQA----EKAE-RYKELKAELRELELALLVLR--LEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 647 EKELKAQSAVLLQNVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDE 726
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 727 VVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQ 806
Cdd:TIGR02168 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 807 SQEELFSVSRDREVALRENRRLQDDLAtmTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLE 886
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
330 340 350
....*....|....*....|....*....|..
gi 528511429 887 RFRSIHTESEDKELKLQQSEGLNNSIRLELLS 918
Cdd:TIGR02168 483 ELAQLQARLDSLERLQENLEGFSEGVKALLKN 514
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
202-806 |
3.32e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 202 LQVADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDGgrpHDVISLEAQnisnEKLIAHLNLQIE 281
Cdd:COG4913 283 LWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG---NGGDRLEQL----EREIERLERELE 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 282 YLQETNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLekdkemvLETADMELQEAKKAIQRQQREL 361
Cdd:COG4913 356 ERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEA-------LAEAEAALRDLRRELRELEAEI 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 362 EGQEEVISTLRRDMADgdhVKDQLRNQ-------------LLDLQDQNNK----MEGLIH----FLEEDKKRLQDKIEAM 420
Cdd:COG4913 429 ASLERRKSNIPARLLA---LRDALAEAlgldeaelpfvgeLIEVRPEEERwrgaIERVLGgfalTLLVPPEHYAAALRWV 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 421 MQEDKEMVLELERMRARhgmcgkDHSPSRLDAFVKSLEEERNYYREEVERY--RLVRGRTD-----------RSPTPVGR 487
Cdd:COG4913 506 NRLHLRGRLVYERVRTG------LPDPERPRLDPDSLAGKLDFKPHPFRAWleAELGRRFDyvcvdspeelrRHPRAITR 579
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 488 GRSPRGRGSWHGKRDGDAELSRVVkerdelqsvlLGFekhmeDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSE 567
Cdd:COG4913 580 AGQVKGNGTRHEKDDRRRIRSRYV----------LGF-----DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQ 644
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 568 LQRRI----------RDDREQTEAELQRVTAERDALR---DRLKvahstALTDREQEefrfldLENTIEKLEREKADLRA 634
Cdd:COG4913 645 ERREAlqrlaeyswdEIDVASAEREIAELEAELERLDassDDLA-----ALEEQLEE------LEAELEELEEELDELKG 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 635 QVTVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQEQMEQSLSDVQHRLsvkTNELQAAHQQIDKLEEKIA 714
Cdd:COG4913 714 EIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENL---EERIDALRARLNRAEEELE 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 715 DL-SRHGSSQKDEVVILQNTIASLDREKDTLQDavdqktesvvLLQQEVHRKEETLLEVRltvtdLENSLNQLQAVLSSR 793
Cdd:COG4913 791 RAmRAFNREWPAETADLDADLESLPEYLALLDR----------LEEDGLPEYEERFKELL-----NENSIEFVADLLSKL 855
|
650
....*....|...
gi 528511429 794 EREIASLRRQLDQ 806
Cdd:COG4913 856 RRAIREIKERIDP 868
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
506-828 |
3.33e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 57.72 E-value: 3.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 506 ELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESselqrrIRDDREQTEAELQR 585
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEK------LKKENQSYKQEIKN 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 586 VTAERDALRdrLKVAHSTALTDREQEEFRFLDLENtiEKLEREKADLRAQVTVLKESRvvveKELKAQSAVLLQNVEE-- 663
Cdd:TIGR04523 389 LESQINDLE--SKIQNQEKLNQQKDEQIKKLQQEK--ELLEKEIERLKETIIKNNSEI----KDLTNQDSVKELIIKNld 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 664 --ATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREK 741
Cdd:TIGR04523 461 ntRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKI 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 742 DTLQDAVDQKTESV--VLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDRE 819
Cdd:TIGR04523 541 SDLEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620
|
....*....
gi 528511429 820 VALRENRRL 828
Cdd:TIGR04523 621 KAKKENEKL 629
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
764-1152 |
4.85e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 4.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 764 RKEETLLevRLTVTDlENsLNQLQAVLSSREREIASLRRQldqsqeelfsvsrdREVALRenrrlqddlatmtrenqavH 843
Cdd:COG1196 173 RKEEAER--KLEATE-EN-LERLEDILGELERQLEPLERQ--------------AEKAER-------------------Y 215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 844 AEMQEALNERDeLKLRVHSYISEVARIESLMAAKEQENRdmlerfrsihtESEDKELKLQQSEGLNNSIRLELLSSDTER 923
Cdd:COG1196 216 RELKEELKELE-AELLLLKLRELEAELEELEAELEELEA-----------ELEELEAELAELEAELEELRLELEELELEL 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 924 RHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELCVKLDSSKELTVRQLTSK 1003
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 1004 SMELERVTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKEFQTHISASEKESELKVLKDRLALADSKTAGHARE 1083
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528511429 1084 VSQLRGKVSQLQTEMDVLKRQLTTERFERERAVQEMRRQGLSFSSLRSSSPLSTSLSPRPASPERSILR 1152
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
698-1028 |
5.32e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 5.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 698 ELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDtLQDAVDQKTESVVLLQQEVHRKEetLLEVRLTVT 777
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA-LLKEKREYEGYELLKEKEALERQ--KEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 778 DLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALREN-RRLQDDLATMTRENQAVHAEMQEALNERDEL 856
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 857 KLRVHSYISEVARIESLMAAKEQENRDMLERFRSIHTESEDKELKLQQSEGLNNSIRLELLSsdterrhLRERVSLQDRE 936
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD-------YREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 937 IQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELCVKLDSSKELTVRQLTSKSMELERVTGELED 1016
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
|
330
....*....|..
gi 528511429 1017 VRSEMELLKKQL 1028
Cdd:TIGR02169 481 VEKELSKLQREL 492
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
547-1028 |
7.18e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 56.97 E-value: 7.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 547 SQCQQAQEELRRVQRELESSELQRRI---RDDREQTEAELQRVTAERDALRDRLKVAHSTALTDRE-QEEFRFL-----D 617
Cdd:PRK02224 183 SDQRGSLDQLKAQIEEKEEKDLHERLnglESELAELDEEIERYEEQREQARETRDEADEVLEEHEErREELETLeaeieD 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 618 LENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQsavllqnVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTN 697
Cdd:PRK02224 263 LRETIAETEREREELAEEVRDLRERLEELEEERDDL-------LAEAGLDDADAEAVEARREELEDRDEELRDRLEECRV 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 698 ELQAAHQQIDKLEEKIADLsrhgssqKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLqqevhrkEETLLEVRLTVT 777
Cdd:PRK02224 336 AAQAHNEEAESLREDADDL-------EERAEELREEAAELESELEEAREAVEDRREEIEEL-------EEEIEELRERFG 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 778 DLENSLNQLQAVLSSREREIASLRRQLDQSQEELfsvsRDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDElk 857
Cdd:PRK02224 402 DAPVDLGNAEDFLEELREERDELREREAELEATL----RTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRE-- 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 858 lrvhsyisevaRIESLMAAKEQenrdmlerfrsIHTESEDKELKLQQSEglnnsirlELLSSDTERRHLRERVSLQDREI 937
Cdd:PRK02224 476 -----------RVEELEAELED-----------LEEEVEEVEERLERAE--------DLVEAEDRIERLEERREDLEELI 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 938 QEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELCVKLDSSKEltvrQLTSKSMELERVT---GEL 1014
Cdd:PRK02224 526 AERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLA----ELKERIESLERIRtllAAI 601
|
490
....*....|....
gi 528511429 1015 EDVRSEMELLKKQL 1028
Cdd:PRK02224 602 ADAEDEIERLREKR 615
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
764-1094 |
1.09e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 764 RKEETLLEVRLTVTDLEnslnQLQAVLSSREREIASLRRQLDQSQ------EELFSVSR-----DREVALRENRRLQDDL 832
Cdd:TIGR02168 173 RRKETERKLERTRENLD----RLEDILNELERQLKSLERQAEKAErykelkAELRELELallvlRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 833 ATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIE-------SLMAAKEQENRDMLERFRSIHTESEDKELKLQQS 905
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelyalaNEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 906 EGLN-------NSIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLAD 978
Cdd:TIGR02168 329 ESKLdelaeelAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 979 LASVRELCVKLDSSKELTVRQLTSKsmELERVTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKEFQTHISASE 1058
Cdd:TIGR02168 409 LERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 528511429 1059 KESELKVLKDRLALADSKTAG------HAREVSQLRGKVSQL 1094
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGvkallkNQSGLSGILGVLSEL 528
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
199-426 |
3.36e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 199 ADLLQVADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDGGRpHDVISLEAQNISNEKLIAHLNL 278
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE-QELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 279 QIEYLQEtnrSLEQRVDSLQQKKKT------VSSEVADLSARNQELCQELTQIDQ-LAQQLEKDKEmvletadmELQEAK 351
Cdd:COG4942 98 ELEAQKE---ELAELLRALYRLGRQpplallLSPEDFLDAVRRLQYLKYLAPARReQAEELRADLA--------ELAALR 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528511429 352 KAIQRQQRELEGQEEVISTLRRDMADgdhVKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDKE 426
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEA---LKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
607-981 |
6.14e-07 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 53.67 E-value: 6.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 607 DREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVvekelKAQSAVLLQNVEEATQQRVE---------SSALRLL 677
Cdd:pfam10174 297 ELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTA-----KEQRAAILQTEVDALRLRLEekesflnkkTKQLQDL 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 678 QEQ---MEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTES 754
Cdd:pfam10174 372 TEEkstLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERI 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 755 VVLLQQEVHRKEETLLE----VRLTVTDLENSLNQLQAVLSSREREIASLRRQ---LDQSQEELFSVSRDREVALRENRr 827
Cdd:pfam10174 452 IERLKEQREREDRERLEelesLKKENKDLKEKVSALQPELTEKESSLIDLKEHassLASSGLKKDSKLKSLEIAVEQKK- 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 828 lQDDLATMTRENQAVHAEMQEALNErdELKLRVHSYISEVARIESLMAAKEQENRDMLERFRSIHTESEDKELKLQQSEG 907
Cdd:pfam10174 531 -EECSKLENQLKKAHNAEEAVRTNP--EINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELES 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 908 LN-------NSIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAyEAQVSSLARAMSRLEEEVQAARAEKASVLADLA 980
Cdd:pfam10174 608 LTlrqmkeqNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQ-QLQLEELMGALEKTRQELDATKARLSSTQQSLA 686
|
.
gi 528511429 981 S 981
Cdd:pfam10174 687 E 687
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
504-657 |
1.13e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 504 DAELSRVVKERDELQSVLLgfEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQR--RIRDDREQTEA 581
Cdd:COG4913 275 EYLRAALRLWFAQRRLELL--EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRleQLEREIERLER 352
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 528511429 582 ELQRVTAERDALRDRLKVAHSTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVL 657
Cdd:COG4913 353 ELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEI 428
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
183-633 |
1.28e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 183 GGYVPPAVAQPDDPYIADLLQVADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLnraldggrphdvisl 262
Cdd:TIGR02169 657 GGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEI--------------- 721
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 263 eaqnisnEKLIAHLNLQIEYLQETNRSLEQRVDSLQQKKKTVSSEVADLSARnqelcqeltqIDQLAQQLEKDKEMVLET 342
Cdd:TIGR02169 722 -------EKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEAR----------IEELEEDLHKLEEALNDL 784
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 343 ADMELQEAKKAIQRQQRELEGQ----EEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKmeglihfLEEDKKRLQDKIE 418
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEvsriEARLREIEQKLNRLTLEKEYLEKEIQELQEQRID-------LKEQIKSIEKEIE 857
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 419 AMMQEDKEMVLELERMRARhgmcgkdhspsrldafvksleeernyyreeveryrlvrgrtdrsptpvgrgrsprgrgswh 498
Cdd:TIGR02169 858 NLNGKKEELEEELEELEAA------------------------------------------------------------- 876
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 499 gKRDGDAELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQRRIRDDREQ 578
Cdd:TIGR02169 877 -LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED 955
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 528511429 579 TEAELQRVTAERDALRDrlkvAHSTALTDREQEEFRFLDLENTIEKLEREKADLR 633
Cdd:TIGR02169 956 VQAELQRVEEEIRALEP----VNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
513-1120 |
1.31e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.80 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 513 ERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESsELQRRIRDDREQTEAELQRVTAERDA 592
Cdd:pfam05483 177 EREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEE-EYKKEINDKEKQVSLLLIQITEKENK 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 593 LRDR---LKVAHSTALTDREQEEFRFLDLENTIEK---LEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEATQ 666
Cdd:pfam05483 256 MKDLtflLEESRDKANQLEEKTKLQDENLKELIEKkdhLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEA 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 667 QRVESSALRLLQE-----------QMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIA 735
Cdd:pfam05483 336 QMEELNKAKAAHSfvvtefeattcSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILA 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 736 sldrEKDTLQDAVDQktesVVLLQQEVHRKEETLLEVRLT----VTDLENSLNQLQAVLSSREREIASLRRQLDQSQEEL 811
Cdd:pfam05483 416 ----EDEKLLDEKKQ----FEKIAEELKGKEQELIFLLQArekeIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKN 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 812 FSVSRDREVALRENRRLQDDLATMTRENQavhaEMQEALNERDELKLRVhsyiseVARIESLmAAKEQENRDMLERFRSI 891
Cdd:pfam05483 488 IELTAHCDKLLLENKELTQEASDMTLELK----KHQEDIINCKKQEERM------LKQIENL-EEKEMNLRDELESVREE 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 892 HTESEDK-ELKLQQSEGLNNSIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARA 970
Cdd:pfam05483 557 FIQKGDEvKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEI 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 971 EKASVLADLASVRElcvKLDSSKELTVRQLTSKSMELERVTGELEDVRSEM-ELLKKQLGSERLTVRNLETLLSTNRQKE 1049
Cdd:pfam05483 637 KVNKLELELASAKQ---KFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIAdEAVKLQKEIDKRCQHKIAEMVALMEKHK 713
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528511429 1050 FQTHISASEKESELKVLKDRLALADSKTAGHAREVSQLRgkvsqlqTEMDVLKRQLTTERFERERAVQEMR 1120
Cdd:pfam05483 714 HQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIK-------AELLSLKKQLEIEKEEKEKLKMEAK 777
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
525-964 |
2.22e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.94 E-value: 2.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 525 EKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELES-SELQRRIRDDREQTEAELQRVTAERDALRDRLKvahst 603
Cdd:TIGR04523 217 ESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQlKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN----- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 604 altdreqeefrflDLENTIEKLEREKA-----DLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQ 678
Cdd:TIGR04523 292 -------------QLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESEN 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 679 EQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLL 758
Cdd:TIGR04523 359 SEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKN 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 759 QQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELfsvsrdrevalrenRRLQDDLATMTRE 838
Cdd:TIGR04523 439 NSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKEL--------------KSKEKELKKLNEE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 839 NQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLER--FRSIHTESEDKELKLQQSEGLNNSirleL 916
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFElkKENLEKEIDEKNKEIEELKQTQKS----L 580
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 528511429 917 LSSDTErrhLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEE 964
Cdd:TIGR04523 581 KKKQEE---KQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKE 625
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
659-1118 |
2.36e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 659 QNVEEATQQRVESSALRLLQEQMEQSLSDVQH-RLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASL 737
Cdd:COG4913 242 EALEDAREQIELLEPIRELAERYAAARERLAElEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 738 DREKDTLQDAVDQ-KTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSR 816
Cdd:COG4913 322 REELDELEAQIRGnGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 817 DREVALRENRRLQDDLAtmtrenqavhAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLeRFRSIHTESE 896
Cdd:COG4913 402 ALEEALAEAEAALRDLR----------RELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAEL-PFVGELIEVR 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 897 DKELKLQQS-EGLNNSIRLELLSSDT---------ERRHLRERVSLQdrEIQEHLNALQAYEAQVSSLARamsRLEEEVQ 966
Cdd:COG4913 471 PEEERWRGAiERVLGGFALTLLVPPEhyaaalrwvNRLHLRGRLVYE--RVRTGLPDPERPRLDPDSLAG---KLDFKPH 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 967 AARAEKASVLADLASVRelCVklDSSKEL--TVRQLTSKSM-------------------------------ELERVTGE 1013
Cdd:COG4913 546 PFRAWLEAELGRRFDYV--CV--DSPEELrrHPRAITRAGQvkgngtrhekddrrrirsryvlgfdnraklaALEAELAE 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 1014 LEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKEF--------QTHISASEKE--------SELKVLKDRLALADSKT 1077
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERREALQRLAEYSWdeidvasaEREIAELEAElerldassDDLAALEEQLEELEAEL 701
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 528511429 1078 AGHAREVSQLRGKVSQLQTEMDVLKRQLTTERFERERAVQE 1118
Cdd:COG4913 702 EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL 742
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
189-426 |
2.58e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.98 E-value: 2.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 189 AVAQPDDPYIADLLQVADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDggrphdvisleaqniS 268
Cdd:COG3883 5 ALAAPTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEID---------------K 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 269 NEKLIAHLNLQIEYLQETnrsLEQRVDSLQQKKKTVSSEVADLSARN-QELcqeLTQIDQLAQQLEKDKEMVLetadmEL 347
Cdd:COG3883 70 LQAEIAEAEAEIEERREE---LGERARALYRSGGSVSYLDVLLGSESfSDF---LDRLSALSKIADADADLLE-----EL 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528511429 348 QEAKKAIQRQQRELEGQEEVISTLrrdmadgdhvKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDKE 426
Cdd:COG3883 139 KADKAELEAKKAELEAKLAELEAL----------KAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAA 207
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
504-893 |
3.34e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 504 DAELSRVVKERDELQSvllgfekhmediqtrvklltaERDQLSSQCQQAQEELRRVQRELesselqrrirddrEQTEAEL 583
Cdd:TIGR02169 687 KRELSSLQSELRRIEN---------------------RLDELSQELSDASRKIGEIEKEI-------------EQLEQEE 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 584 QRVTAERDALRDRLKvahstaltdreqeefrflDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQnvEE 663
Cdd:TIGR02169 733 EKLKERLEELEEDLS------------------SLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 664 ATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDT 743
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE 872
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 744 LQDAVDQKTESVVLLQQEVHRKEETLLEVR-------LTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSR 816
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELErkieeleAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS 952
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528511429 817 DREVALrENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDM-LERFRSIHT 893
Cdd:TIGR02169 953 LEDVQA-ELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVfMEAFEAINE 1029
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
886-1115 |
6.16e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 6.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 886 ERFRSIHTESEDKELKLQQseglnnsirLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEV 965
Cdd:TIGR02168 213 ERYKELKAELRELELALLV---------LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 966 QAARAEKASVLADLASVRELCVKLDSSKELTVRQLTSKSMELERVTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTN 1045
Cdd:TIGR02168 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL 363
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 1046 RQKEFQTHISASEKESELKVLKDRLALADSKTAGHAREVSQLRGKVSQLQTEMDVLKRQLTTERFERERA 1115
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA 433
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
508-1061 |
1.09e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 508 SRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAE-------RDQLSSQCQQAQEELRRVQRELESSElqRRIRDDREQTE 580
Cdd:pfam15921 324 STVSQLRSELREAKRMYEDKIEELEKQLVLANSEltearteRDQFSQESGNLDDQLQKLLADLHKRE--KELSLEKEQNK 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 581 AELQRVTAERDALrDRLKvahsTALTDREQEEFRFLDLENTIE-----KLEREKADLRAQVTVLkESRVVVEKELKAQSA 655
Cdd:pfam15921 402 RLWDRDTGNSITI-DHLR----RELDDRNMEVQRLEALLKAMKsecqgQMERQMAAIQGKNESL-EKVSSLTAQLESTKE 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 656 VLLQNVEEATqqrvessALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIA 735
Cdd:pfam15921 476 MLRKVVEELT-------AKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQT 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 736 sldrEKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLqavlssrEREIASLRRQLDQsqeelFSVS 815
Cdd:pfam15921 549 ----ECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQL-------EKEINDRRLELQE-----FKIL 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 816 RDREVAlrENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLERFRSihtes 895
Cdd:pfam15921 613 KDKKDA--KIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRN----- 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 896 edkelKLQQSEGLNNSIRLELLSSDTERRHLRervslqdreiqehlNALQAYEAQVSSLARAMSRLEEEVQAARAEKASV 975
Cdd:pfam15921 686 -----KSEEMETTTNKLKMQLKSAQSELEQTR--------------NTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDAL 746
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 976 LADLASVRELCVKLDSSKELTVRQLTSKSMELERVTGELEDVRSEMELLKKQLGSERLTVRNLETLL--STNRQKEFQTH 1053
Cdd:pfam15921 747 QSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALdkASLQFAECQDI 826
|
....*...
gi 528511429 1054 ISASEKES 1061
Cdd:pfam15921 827 IQRQEQES 834
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
202-369 |
1.28e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 49.06 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 202 LQVADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRAL-DGGRPHDVIS--LEAQNISN--------E 270
Cdd:COG3883 46 LEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALyRSGGSVSYLDvlLGSESFSDfldrlsalS 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 271 KLIAHLNLQIEYLQETNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLEKDKEMVLEtADMELQEA 350
Cdd:COG3883 126 KIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEA-QLAELEAE 204
|
170
....*....|....*....
gi 528511429 351 KKAIQRQQRELEGQEEVIS 369
Cdd:COG3883 205 LAAAEAAAAAAAAAAAAAA 223
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
716-973 |
1.97e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 716 LSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSRER 795
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 796 EIASLRRQLDQsqeelfsvsrdrevalrenrrLQDDLATMTRENQavhaemqeALNERDELKLRVHS-YISEVARIESLM 874
Cdd:COG4942 91 EIAELRAELEA---------------------QKEELAELLRALY--------RLGRQPPLALLLSPeDFLDAVRRLQYL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 875 AAKEQENRDMLERFRSIHTESEDKELKLQQSEGLNNSIRLELlssDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSL 954
Cdd:COG4942 142 KYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL---EEERAALEALKAERQKLLARLEKELAELAAELAEL 218
|
250
....*....|....*....
gi 528511429 955 ARAMSRLEEEVQAARAEKA 973
Cdd:COG4942 219 QQEAEELEALIARLEAEAA 237
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
226-437 |
1.99e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 226 AQGGIKHLNKQVEERDKEIERLNRALDggrphdviSLEAQNISNEKLIAHLNLQIEYLQETNRSLEQRVDSLQQKKKTVS 305
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELA--------ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 306 SEVADLSARNQELCQELTQIDQLAQQLEKDKEMVLETADMELQEAKKAIQRQQRELEGQEEVISTLRRDMADGDHVKDQL 385
Cdd:COG4942 90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 528511429 386 RNQLLDLQDQNNKMEGLIHFLEEDKKR---LQDKIEAMMQEDKEMVLELERMRAR 437
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAErqkLLARLEKELAELAAELAELQQEAEE 224
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
208-994 |
3.23e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 208 RIQELQKEVAQLKLDLERAQGGIKHLN--------KQVEERDKEIERLNRALDGGRpHDVISLEAQNISNEKLIAHLNLQ 279
Cdd:TIGR02169 259 EISELEKRLEEIEQLLEELNKKIKDLGeeeqlrvkEKIGELEAEIASLERSIAEKE-RELEDAEERLAKLEAEIDKLLAE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 280 IEYLQETNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLEKDKEMVLEtadmELQEAKKAIQRQQR 359
Cdd:TIGR02169 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR----EINELKRELDRLQE 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 360 ELEGQEEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDKEMVLELERMRarhg 439
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQ---- 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 440 mcgkdhspSRLDAFVKSLEEERNYYREEVERYRLVRGRTDRSPTPVGRGRSPRGRGSWHGKRDGDAELSRVVKERDelqs 519
Cdd:TIGR02169 490 --------RELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDD---- 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 520 vllgfekhmEDIQTRVKLLtaERDQLSSQCQQAQEELRRVQRELESSELQRRIRDDREQTEAELQRVTAERDALRDRLkV 599
Cdd:TIGR02169 558 ---------AVAKEAIELL--KRRKAGRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTL-V 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 600 AHSTALTDREQEEFRFLDLENTIekleREKADLRAQVTVLKESRVVVEKELKAQSAVL------LQNVEEATQQRVESsa 673
Cdd:TIGR02169 626 VEDIEAARRLMGKYRMVTLEGEL----FEKSGAMTGGSRAPRGGILFSRSEPAELQRLrerlegLKRELSSLQSELRR-- 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 674 LRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLsrhgssqKDEVVILQNTIASLDREKDTLQDAVDQKTE 753
Cdd:TIGR02169 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL-------EEDLSSLEQEIENVKSELKELEARIEELEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 754 SVVLLQQEVHRKEETLLEVRltVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQDDLA 833
Cdd:TIGR02169 773 DLHKLEEALNDLEARLSHSR--IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 834 TMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLERFRSIHTESEDKELKLQQseglnnsiR 913
Cdd:TIGR02169 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSE--------L 922
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 914 LELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELCVKLDSSK 993
Cdd:TIGR02169 923 KAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEER 1002
|
.
gi 528511429 994 E 994
Cdd:TIGR02169 1003 K 1003
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
622-1114 |
4.09e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 622 IEKLEREKADLRAQVTVLKESRVVVEKELKAQSavllqNVEEATQQrVESSALRLLQEQMEqsLSDVQHRLSVKTNELQA 701
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTE-----NIEELIKE-KEKELEEVLREINE--ISSELPELREELEKLEK 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 702 AHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVdQKTESVVLLQQEVHRKEETLLEVRLTVTDLEN 781
Cdd:PRK03918 229 EVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI-EELEEKVKELKELKEKAEEYIKLSEFYEEYLD 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 782 SLNQLQAVLSSREREIASLRRQLdqsqEELFSVSRDREVALRENRRLQDDLatmtrenqavhaemqEALNERDELKLRVH 861
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEERI----KELEEKEERLEELKKKLKELEKRL---------------EELEERHELYEEAK 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 862 SYISEVARIESLMAAKEQEN-RDMLERFRSIHTESEDKELKLQQSEGLNNSIRLELLSSDTERRHLRERVSLQDREIQEH 940
Cdd:PRK03918 369 AKKEELERLKKRLTGLTPEKlEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 941 --LNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELCVKLDSSKEL----------TVRQLTSKSMELE 1008
Cdd:PRK03918 449 hrKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLkeleeklkkyNLEELEKKAEEYE 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 1009 RVTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKE-------------------------------FQTHISAS 1057
Cdd:PRK03918 529 KLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEeelaellkeleelgfesveeleerlkelepfYNEYLELK 608
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 528511429 1058 EKESELKVLKDRLALADSKTAGHAREVSQLRGKVSQLQTEMDVLKRQLTTERFERER 1114
Cdd:PRK03918 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR 665
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
621-811 |
4.12e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 621 TIEKLEREKADLRAQVTVLKEsrvVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQ 700
Cdd:COG4913 236 DLERAHEALEDAREQIELLEP---IRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 701 AAHQQIDKLEEKIADLSR----HGSSQKDEvviLQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRL-- 774
Cdd:COG4913 313 RLEARLDALREELDELEAqirgNGGDRLEQ---LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAea 389
|
170 180 190
....*....|....*....|....*....|....*....
gi 528511429 775 --TVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEEL 811
Cdd:COG4913 390 aaLLEALEEELEALEEALAEAEAALRDLRRELRELEAEI 428
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
622-811 |
4.20e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 4.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 622 IEKLEREKADLRAQVTVLKESRVVVEKELKA--QSAVLLQNVEEATQQRVESSALrllqEQMEQSLSDVQHRLSVKTNEL 699
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDAlqERREALQRLAEYSWDEIDVASA----EREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 700 QAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEvhrkeetLLEVRLTVTDL 779
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA-------LLEERFAAALG 760
|
170 180 190
....*....|....*....|....*....|..
gi 528511429 780 ENSLNQLQAVLssrEREIASLRRQLDQSQEEL 811
Cdd:COG4913 761 DAVERELRENL---EERIDALRARLNRAEEEL 789
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
205-419 |
4.22e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.13 E-value: 4.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 205 ADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDggrphdviSLEAQNISNEKLIAHLNLQIEYLQ 284
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE--------ALQAEIDKLQAEIAEAEAEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 285 ETnrsLEQRVDSLQQKKKTV--------SSEVADLSARNQELCQ-------ELTQIDQLAQQLEKDKEMVLETADmELQE 349
Cdd:COG3883 86 EE---LGERARALYRSGGSVsyldvllgSESFSDFLDRLSALSKiadadadLLEELKADKAELEAKKAELEAKLA-ELEA 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 350 AKKAIQRQQRELEGQeevistlrrdmadgdhvKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEA 419
Cdd:COG3883 162 LKAELEAAKAELEAQ-----------------QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
682-880 |
5.87e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 5.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 682 EQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESV--VLLQ 759
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELgeRARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 760 QEVHRKEETLLEVRLTVTDLENSLNQLQAV--LSSREREI----ASLRRQLDQSQEELfsvsrdrEVALRENRRLQDDLA 833
Cdd:COG3883 95 LYRSGGSVSYLDVLLGSESFSDFLDRLSALskIADADADLleelKADKAELEAKKAEL-------EAKLAELEALKAELE 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 528511429 834 TMTRENQAVHAEMQEALNerdELKLRVHSYISEVARIESLMAAKEQE 880
Cdd:COG3883 168 AAKAELEAQQAEQEALLA---QLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
620-849 |
7.26e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 7.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 620 NTIEKLEREKADLRAQVTVLKESRvvveKELKAQSAVLLQNVEEATQQRvesSALRLLQEQMEQSLSDVQHRLSVKTNEL 699
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL----AALKKEEKALLKQLAALERRI---AALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 700 QAAHQQIDKLEEKIAD----LSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRLT 775
Cdd:COG4942 93 AELRAELEAQKEELAEllraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528511429 776 VTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQDDLATMTRENQAVHAEMQEA 849
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
533-1118 |
9.14e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.89 E-value: 9.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 533 TRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQR--------------------RIRDDREQTEAELQRVTAER-- 590
Cdd:TIGR00618 246 TQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQerinrarkaaplaahikavtQIEQQAQRIHTELQSKMRSRak 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 591 ------DALRDRLKVAHSTALTDREQEEFRFLDLENTIEKLEREKAD----LRAQVTVLKESRVVVEKELKAQSAVLLQN 660
Cdd:TIGR00618 326 llmkraAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCqqhtLTQHIHTLQQQKTTLTQKLQSLCKELDIL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 661 VEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDRE 740
Cdd:TIGR00618 406 QREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQE 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 741 KDT----LQDAVDQKTESVVLLQQEVHRKEETLLEVRLTVT-----DLENSLNQLQAVLSSREREIASLRRQLDQSQEEL 811
Cdd:TIGR00618 486 TRKkavvLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLtrrmqRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 812 FSVSRDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHsyisevarIESLMAAKEQENRDMLERFRSI 891
Cdd:TIGR00618 566 QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQH--------ALLRKLQPEQDLQDVRLHLQQC 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 892 HTESEDKELKLQQSEglnnsirlELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAE 971
Cdd:TIGR00618 638 SQELALKLTALHALQ--------LTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLREL 709
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 972 KASVLADLASVRELCVKLDSSK------ELTVRQLTSKSMELERV----TGELEDVRSEMELLKKQLGSE--------RL 1033
Cdd:TIGR00618 710 ETHIEEYDREFNEIENASSSLGsdlaarEDALNQSLKELMHQARTvlkaRTEAHFNNNEEVTAALQTGAElshlaaeiQF 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 1034 TVRNLETLLSTNRQKEFQTHISASEKESELKVLKDRLALADSKTAGHAREVSQLRGKVSQLQTEMDVLKRQLTTERFERE 1113
Cdd:TIGR00618 790 FNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
....*
gi 528511429 1114 RAVQE 1118
Cdd:TIGR00618 870 KIIQL 874
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
275-423 |
1.59e-04 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 45.01 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 275 HLNLQIEYLQETNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLEKDKEMVLETADMELQEAKKAI 354
Cdd:smart00787 141 LLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEI 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528511429 355 QRQQRELEGQEEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEgliHFLEEDKKRLQDKIEAMMQE 423
Cdd:smart00787 221 MIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR---GFTFKEIEKLKEQLKLLQSL 286
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
279-1104 |
2.81e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 2.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 279 QIEYLQETNRSLEQRVDSLQQKKKTVS---SEVADLSARNQELCQELTQIDQLAQQLEKDKEMVLETADMELQEAKKAIQ 355
Cdd:TIGR00606 232 QLESSREIVKSYENELDPLKNRLKEIEhnlSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQ 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 356 RQQRELEGQ----EEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQE---DKEMV 428
Cdd:TIGR00606 312 RTVREKERElvdcQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFErgpFSERQ 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 429 LELERMRARHGMCGKDHSPSRLDAFVKSLEEERNYYREEVERYRLVRGRTDRSPTPVGRGRSPRGRGSWHGKRDGDAELS 508
Cdd:TIGR00606 392 IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 509 RVVKERDELQSVLLGFEKHMEDIQTRVKLltaeRDQLSSQCQQAqEELRRVQRELESSELQRRIRDDREQTEAELQRVTA 588
Cdd:TIGR00606 472 RILELDQELRKAERELSKAEKNSLTETLK----KEVKSLQNEKA-DLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMD 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 589 ERDALRDrLKVAHSTALT-------DREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLL--- 658
Cdd:TIGR00606 547 KDEQIRK-IKSRHSDELTsllgyfpNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSsye 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 659 QNVEEATQQRVESSALRLLQEQMEQSLSDVQhRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEvviLQNTIASLd 738
Cdd:TIGR00606 626 DKLFDVCGSQDEESDLERLKEEIEKSSKQRA-MLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAE---LQEFISDL- 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 739 reKDTLQDAVDQKTESVVLLQQEVHRKEETL--LEVRLTVTDL-ENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVS 815
Cdd:TIGR00606 701 --QSKLRLAPDKLKSTESELKKKEKRRDEMLglAPGRQSIIDLkEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIM 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 816 RDREVAlrenRRLQDDLATMTRenqavhAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDML-------ERF 888
Cdd:TIGR00606 779 PEEESA----KVCLTDVTIMER------FQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELdtvvskiELN 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 889 RSIHTESEDKELKLQQSEGLNNSIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRL----EEE 964
Cdd:TIGR00606 849 RKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDqqekEEL 928
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 965 VQAARAEKASVLADLASVRELCVKL--------DSSKELTVRQLTSKSMELERVTGELEDVRSEMELLKKQLGSERLTVR 1036
Cdd:TIGR00606 929 ISSKETSNKKAQDKVNDIKEKVKNIhgymkdieNKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDID 1008
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528511429 1037 NletllSTNRQKEFQTHISASEKESELKVLKDRLALADSKTAghAREVSQLRGKVSQLQTEMDVLKRQ 1104
Cdd:TIGR00606 1009 T-----QKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMG--QMQVLQMKQEHQKLEENIDLIKRN 1069
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
504-906 |
3.35e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 504 DAELSRVVKErdeLQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELE---------SSELQRrIRD 574
Cdd:TIGR00606 690 EAELQEFISD---LQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPelrnklqkvNRDIQR-LKN 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 575 DREQTEAELQRVTAERDALRDRLkvahsTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQS 654
Cdd:TIGR00606 766 DIEEQETLLGTIMPEEESAKVCL-----TDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDT 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 655 AV----LLQNVEEATQQRVESsalrlLQEQMEQSLSdvqHRLSVKTN--ELQAAHQQIDKLEEKIADLSRHGSSQKDEVV 728
Cdd:TIGR00606 841 VVskieLNRKLIQDQQEQIQH-----LKSKTNELKS---EKLQIGTNlqRRQQFEEQLVELSTEVQSLIREIKDAKEQDS 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 729 ILQNTIASLDREKDTLqdaVDQKTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQ-LQAVLSSREREIASLRRQLDQS 807
Cdd:TIGR00606 913 PLETFLEKDQQEKEEL---ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDgKDDYLKQKETELNTVNAQLEEC 989
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 808 Q-------EELFSVSRDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQE 880
Cdd:TIGR00606 990 EkhqekinEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRN 1069
|
410 420
....*....|....*....|....*.
gi 528511429 881 NRDMLERFRSIHTESEDKELKLQQSE 906
Cdd:TIGR00606 1070 HVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
200-688 |
4.39e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 200 DLLQVADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDggrphdvisleaqnisneklIAHLNLQ 279
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ--------------------LLPLYQE 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 280 IEYLQETNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLEKDKEMVLETADMELQEAKKAIQRQQR 359
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 360 ELEGQEEVISTLRRDMadgdhvkDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDKEMVLELERMRARHG 439
Cdd:COG4717 214 ELEEAQEELEELEEEL-------EQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 440 MCGKDHSPSRLDAFVKSLEEERNYYREEVERYRLVRGRTDRSPTPvGRGRSPRGRGSWHGKRDGDAELSRVVKERDELQs 519
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP-PDLSPEELLELLDRIEELQELLREAEELEEELQ- 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 520 vLLGFEKHMEDIQTRVKLLTAE----RDQLSSQCQQAQEELRRVQRELES---SELQRRIRDDREQTEAELQRVTAERDA 592
Cdd:COG4717 365 -LEELEQEIAALLAEAGVEDEEelraALEQAEEYQELKEELEELEEQLEEllgELEELLEALDEEELEEELEELEEELEE 443
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 593 LRDRLKVAHsTALTDREQeEFRFLDLENTIEKLEREKADLRAQVTvlkesrvvvEKELKAQSAVLLQNVEEATQQRVESS 672
Cdd:COG4717 444 LEEELEELR-EELAELEA-ELEQLEEDGELAELLQELEELKAELR---------ELAEEWAALKLALELLEEAREEYREE 512
|
490
....*....|....*.
gi 528511429 673 ALRLLQEQMEQSLSDV 688
Cdd:COG4717 513 RLPPVLERASEYFSRL 528
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
746-1109 |
5.25e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 5.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 746 DAVDQKTESVVLLQQEVHRKEETllevrltvtDLENSLNQLQAVLSSREREIASLRRQLDQSQEELfsvsRDREVALREN 825
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEEK---------DLHERLNGLESELAELDEEIERYEEQREQARETR----DEADEVLEEH 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 826 RRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESlmaakeqENRDMLERfrsIHTESEDKELKLQQS 905
Cdd:PRK02224 247 EERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEE-------ERDDLLAE---AGLDDADAEAVEARR 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 906 EGLnnsirlellssDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVREL 985
Cdd:PRK02224 317 EEL-----------EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREE 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 986 CVKLDSSKELTVRQLTSKSMELERVTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKEFQTHISASEKESELKV 1065
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSP 465
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 528511429 1066 LKDRLALADSKTAGHAREVSQLRGKVSQLQTEMDVLKRQLTTER 1109
Cdd:PRK02224 466 HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAED 509
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
512-984 |
6.23e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 6.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 512 KERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSsQCQQAQEELRRVQRELESSELQRRIRDDREQTEAELQRVTAERD 591
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELE-ELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 592 ALRDRLKvahstaltdreqeefrfldlenTIEKLEREKADLRAQVtvlkesrvvveKELKAQSAVLLQNVEEATQQRVES 671
Cdd:COG4717 150 ELEERLE----------------------ELRELEEELEELEAEL-----------AELQEELEELLEQLSLATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 672 SALRLlqEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGS-SQKDEVVILQNTIASLDREKDTLQDAVDQ 750
Cdd:COG4717 197 LAEEL--EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERlKEARLLLLIAAALLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 751 KTESVVLLQQevhrkeetllevrlTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQD 830
Cdd:COG4717 275 IAGVLFLVLG--------------LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 831 DLATMTRENQAVHAEMQEALNERDELKLRvhsyisevARIESLMAAKEQENRDMLERFRSIHTESEDKELKLQQSEGLNN 910
Cdd:COG4717 341 ELLDRIEELQELLREAEELEEELQLEELE--------QEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLE 412
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528511429 911 SIRLEL--LSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEE--EVQAARAEKASVLADLASVRE 984
Cdd:COG4717 413 ELLGELeeLLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAELLQELEELKAELRELAE 490
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
209-416 |
6.58e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 209 IQELQKEVAQLK---LDLERAQGGIKHLNKQVEERDKEIERLNRALDGGRPHDVIS-----------LEAQNISNEKLIA 274
Cdd:TIGR04523 259 KDEQNKIKKQLSekqKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSelknqekkleeIQNQISQNNKIIS 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 275 HLNLQIEYL-----------QETNRSLEQRVDSLQQKKKTVSS---EVADLSARNQELCQELTQIDQLAQQLE---KDKE 337
Cdd:TIGR04523 339 QLNEQISQLkkeltnsesenSEKQRELEEKQNEIEKLKKENQSykqEIKNLESQINDLESKIQNQEKLNQQKDeqiKKLQ 418
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528511429 338 MVLETADMELQEAKKAIQRQQRELEGQEEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEgliHFLEEDKKRLQDK 416
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK---QNLEQKQKELKSK 494
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
505-1008 |
8.39e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 8.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 505 AELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQ---------QAQEELRRVQRELEssELQRRIRdD 575
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllplyqeleALEAELAELPERLE--ELEERLE-E 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 576 REQTEAELQRVTAERDALRDRLKVAhstALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSA 655
Cdd:COG4717 158 LRELEEELEELEAELAELQEELEEL---LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 656 VLLQNVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIA 735
Cdd:COG4717 235 ELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 736 SLDREKdtLQDAVDQKTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQavLSSREREIASLRRQLDQSQEELFsvs 815
Cdd:COG4717 315 ELEEEE--LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQ--LEELEQEIAALLAEAGVEDEEEL--- 387
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 816 RDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRvhsyiSEVARIESLMAAKEQENRDMLERFRSIHTEs 895
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELE-----EELEELEEELEELEEELEELREELAELEAE- 461
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 896 edkelklqqseglnnsirLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKAS- 974
Cdd:COG4717 462 ------------------LEQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERLPPVLERASe 523
|
490 500 510
....*....|....*....|....*....|....
gi 528511429 975 VLADLASVRELCVKLDSSKELTVRQLTSKSMELE 1008
Cdd:COG4717 524 YFSRLTDGRYRLIRIDEDLSLKVDTEDGRTRPVE 557
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
626-852 |
8.66e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 8.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 626 EREKADLRAQVTVLKESRVVVEKELKAqsavLLQNVEEATQQrvessalrllQEQMEQSLSDVQHRLSVKTNELQAAHQQ 705
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDA----LQAELEELNEE----------YNELQAELEALQAEIDKLQAEIAEAEAE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 706 IDKLEEKIADLSRH----GSSQKDEVVILQNT--------IASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVR 773
Cdd:COG3883 81 IEERREELGERARAlyrsGGSVSYLDVLLGSEsfsdfldrLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELE 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528511429 774 LTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQDDLATMTRENQAVHAEMQEALNE 852
Cdd:COG3883 161 ALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
218-377 |
8.86e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 8.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 218 QLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDGGR-PHDVISLEAQNISNEKLIAHLNLQIEYLQETNRSLEQRVDS 296
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRqKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 297 LQQKKKTV---------SSEVADLSARNQELCQELT------------------QIDQLAQQLEKDKEMVLETADMELQE 349
Cdd:COG3206 245 LRAQLGSGpdalpellqSPVIQQLRAQLAELEAELAelsarytpnhpdvialraQIAALRAQLQQEAQRILASLEAELEA 324
|
170 180
....*....|....*....|....*...
gi 528511429 350 AKKAIQRQQRELEGQEEVISTLRRDMAD 377
Cdd:COG3206 325 LQAREASLQAQLAQLEARLAELPELEAE 352
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
674-1103 |
9.72e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 9.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 674 LRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDevviLQNTIASLDREKDTLQDAVDQKTE 753
Cdd:TIGR04523 164 LKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKS----LESQISELKKQNNQLKDNIEKKQQ 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 754 SVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALreNRRLQDDLA 833
Cdd:TIGR04523 240 EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDW--NKELKSELK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 834 TMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLERFRSIHTESEDKELKLQQSEGLNNSIR 913
Cdd:TIGR04523 318 NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 914 LELLSSDTERRHLRERV-------SLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELC 986
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIkklqqekELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 987 VKLDSSKELTVRQLTSKSMELERVTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKefqthisASEKESELKVL 1066
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESK-------ISDLEDELNKD 550
|
410 420 430
....*....|....*....|....*....|....*..
gi 528511429 1067 KDRLaladsKTAGHAREVSQLRGKVSQLQTEMDVLKR 1103
Cdd:TIGR04523 551 DFEL-----KKENLEKEIDEKNKEIEELKQTQKSLKK 582
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
70-889 |
1.34e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 70 LEPYKTENARLVKENNEMHLGLLKLREEKDRISRELKAYIRKLDHETSDLKFLNNQYV----------QKVRSLEKDSNG 139
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLklneeridllQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 140 KTERILQLQEKNMQAVVQTPGGKKRSIPF--RRQRMQTDELLPSSGGYVPPAVAQPDDpyiADLLQVADDRIQELQKEVA 217
Cdd:pfam02463 255 SSKQEIEKEEEKLAQVLKENKEEEKEKKLqeEELKLLAKEEEELKSELLKLERRKVDD---EEKLKESEKEKKKAEKELK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 218 QLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDGGRPH-----DVISLEAQNISNEKLIAHLNLQIEYLQETNRSLEQ 292
Cdd:pfam02463 332 KEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLeeellAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 293 RvdsLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLEKDKEMVLETADMELQEAKKAIQRQQRELEGQEEVIS-TL 371
Cdd:pfam02463 412 E---LARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQlEL 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 372 RRDMADGDHVKDQL---RNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDKEMVLELERMRARHGMCGKDHSPS 448
Cdd:pfam02463 489 LLSRQKLEERSQKEskaRSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVR 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 449 RLDAFVKSLEEERNYYREEVERYRLVRGRTDRSPTPVGRGRSPRGRGSWHGKRDGDAELSRVVKERDELQSVLLGFEKHM 528
Cdd:pfam02463 569 ALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGL 648
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 529 EDIQTRVKLLTA--ERDQLSSQCQQAQEELRRVQRELESSELQRRIRDDREQTEAELQRVTAERDALRD---RLKVAHST 603
Cdd:pfam02463 649 RKGVSLEEGLAEksEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLeaeELLADRVQ 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 604 ALTDREQEEFRFLDLENTIEKLEREKADLRA-QVTVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQEQME 682
Cdd:pfam02463 729 EAQDKINEELKLLKQKIDEEEEEEEKSRLKKeEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEE 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 683 QSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQK---DEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQ 759
Cdd:pfam02463 809 ELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKlaeEELERLEEEITKEELLQELLLKEEELEEQKLKDEL 888
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 760 QEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQDDLAtmTREN 839
Cdd:pfam02463 889 ESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERN--KRLL 966
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|
gi 528511429 840 QAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLERFR 889
Cdd:pfam02463 967 LAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETC 1016
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
730-904 |
1.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 730 LQNTIASLDREKDTLQDAVDQKTESVVLLQQE---VHRKEETLLEVRlTVTDLENSLNQLQAVLSSREREIASLRRQLDQ 806
Cdd:COG3206 173 ARKALEFLEEQLPELRKELEEAEAALEEFRQKnglVDLSEEAKLLLQ-QLSELESQLAEARAELAEAEARLAALRAQLGS 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 807 SQEELFSVSRDREVA--LRENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHSYISEV-----ARIESLmAAKEQ 879
Cdd:COG3206 252 GPDALPELLQSPVIQqlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIlasleAELEAL-QAREA 330
|
170 180
....*....|....*....|....*
gi 528511429 880 ENRDMLERFRSIHTESEDKELKLQQ 904
Cdd:COG3206 331 SLQAQLAQLEARLAELPELEAELRR 355
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
506-1028 |
1.71e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 506 ELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQRRIRDDREQTEAELQR 585
Cdd:PRK03918 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 586 VTAERDALRDRLKVAHSTaLTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEAt 665
Cdd:PRK03918 312 IEKRLSRLEEEINGIEER-IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 666 qqrvessalrllqeqmeqslsdvqhrlsvkTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQ 745
Cdd:PRK03918 390 ------------------------------EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 746 DAVDQKTEsvvllqqevHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEelfsVSRDREVAlREN 825
Cdd:PRK03918 440 VCGRELTE---------EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE----LIKLKELA-EQL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 826 RRLQDDLATMTRENQAVHAEMQEALNER-DELKLRVHSYISEVARIESL---MAAKEQENRDMLERFRSIHTE------- 894
Cdd:PRK03918 506 KELEEKLKKYNLEELEKKAEEYEKLKEKlIKLKGEIKSLKKELEKLEELkkkLAELEKKLDELEEELAELLKEleelgfe 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 895 -SEDKELKLQQSEGLNNSIrLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRL-----EEEVQAA 968
Cdd:PRK03918 586 sVEELEERLKELEPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELekkysEEEYEEL 664
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 969 RAEKASVLADLASVRELCVKLDSSKELTVRQLTsksmELERVTGELEDVRSEMELLKKQL 1028
Cdd:PRK03918 665 REEYLELSRELAGLRAELEELEKRREEIKKTLE----KLKEELEEREKAKKELEKLEKAL 720
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
529-717 |
1.77e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 529 EDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELE---------------SSELQR--RIRDDREQTEAELQRVTAERD 591
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEefrqknglvdlseeaKLLLQQlsELESQLAEARAELAEAEARLA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 592 ALRDRLKVAHSTALTDREQEEFRflDLENTIEKLEREKADLRA-------QVTVLKESRVVVEKELKAQSAVLLQNVE-E 663
Cdd:COG3206 244 ALRAQLGSGPDALPELLQSPVIQ--QLRAQLAELEAELAELSArytpnhpDVIALRAQIAALRAQLQQEAQRILASLEaE 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 528511429 664 ATQQRVESSALRLLQEQMEQ---SLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLS 717
Cdd:COG3206 322 LEALQAREASLQAQLAQLEArlaELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
506-670 |
1.79e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 506 ELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELEssELQRRIRDDREQ-----TE 580
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIE--EVEARIKKYEEQlgnvrNN 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 581 AELQRVTAERDALRDRLKVAhstaltdreqeEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQN 660
Cdd:COG1579 89 KEYEALQKEIESLKRRISDL-----------EDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAE 157
|
170
....*....|
gi 528511429 661 VEEATQQRVE 670
Cdd:COG1579 158 LEELEAEREE 167
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
207-426 |
1.87e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 207 DRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDggrphdviSLEAQNISNEKLIAHLNLQIEYLQET 286
Cdd:TIGR04523 440 SEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLE--------QKQKELKSKEKELKKLNEEKKELEEK 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 287 NRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQL-------AQQLEKDKEMVletadmELQEAKKAIQRQQR 359
Cdd:TIGR04523 512 VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFElkkenleKEIDEKNKEIE------ELKQTQKSLKKKQE 585
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528511429 360 ELE----GQEEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDKE 426
Cdd:TIGR04523 586 EKQelidQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
525-1121 |
2.32e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 525 EKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQRRIRDDREQTEAELQRVTAERDALRDRLKVAHSTA 604
Cdd:pfam02463 211 EYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 605 LTDREQEEfrfldlENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQ----------NVEEATQQRVESSAL 674
Cdd:pfam02463 291 LAKEEEEL------KSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEElekelkeleiKREAEEEEEEELEKL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 675 RLLQEQMEQSLSDVQHRLSVKTNELQAAHQQ----IDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQ 750
Cdd:pfam02463 365 QEKLEQLEEELLAKKKLESERLSSAAKLKEEelelKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQG 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 751 KTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREVALRENRRLQD 830
Cdd:pfam02463 445 KLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRI 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 831 DLATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLERFRSIHTESEDKELKLQQSEGLNN 910
Cdd:pfam02463 525 ISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILN 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 911 SIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELCVKLD 990
Cdd:pfam02463 605 LAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEK 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 991 SSKELT----VRQLTSKSMELERVTGELEDVRSEMELLKKQLGSERLTVRNLETLLSTNRQKEFQTHISASEKESELKVL 1066
Cdd:pfam02463 685 AESELAkeeiLRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEE 764
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 528511429 1067 KDRLALADSKTAGHAREVSQLRGKVSQLQTEMDVLKRQLTTERFERERAVQEMRR 1121
Cdd:pfam02463 765 EKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEE 819
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
504-1071 |
2.41e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 504 DAELSRVVKERDELQSVLLGFEKhmEDIQTRvKLLTAERDQLSSQCQQAQEELRRVQRELES--SELQRRIRDDREQTEA 581
Cdd:pfam12128 314 DAAVAKDRSELEALEDQHGAFLD--ADIETA-AADQEQLPSWQSELENLEERLKALTGKHQDvtAKYNRRRSKIKEQNNR 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 582 ELQRVTAERDALR---DRLKVAHSTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELK---AQSA 655
Cdd:pfam12128 391 DIAGIKDKLAKIRearDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLlqlENFD 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 656 VLLQNVEEATQQRV--------ESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDK--------LEEKIADLSRH 719
Cdd:pfam12128 471 ERIERAREEQEAANaeverlqsELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPqagtllhfLRKEAPDWEQS 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 720 GSSQKDEVVILQntiASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEvrltvTDLENSLNQLQAVLSSREREIAS 799
Cdd:pfam12128 551 IGKVISPELLHR---TDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASE-----EELRERLDKAEEALQSAREKQAA 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 800 LRRQLDQSQEELFSVSRDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDELKlrvhsyISEVARIESLMAAKEQ 879
Cdd:pfam12128 623 AEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSA------NERLNSLEAQLKQLDK 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 880 ENRDMLERFRSIHTE-SEDKELKLQQSEG-LNNSIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLARA 957
Cdd:pfam12128 697 KHQAWLEEQKEQKREaRTEKQAYWQVVEGaLDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKRE 776
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 958 MSRLEEEVQAARAEKASVLadlasvrelcvkldsskELTVRQLTSKSMELERVTGELEDVRSEMELLKKQLGSERLTVRN 1037
Cdd:pfam12128 777 IRTLERKIERIAVRRQEVL-----------------RYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKL 839
|
570 580 590
....*....|....*....|....*....|....
gi 528511429 1038 LETLLSTNRQKEFQTHISASEKESELKVLKDRLA 1071
Cdd:pfam12128 840 RRAKLEMERKASEKQQVRLSENLRGLRCEMSKLA 873
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
534-826 |
2.55e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 534 RVKLLTAERDQLSSQCQQAQEELRRVQR---------------------ELESSELQRRIR---DDREQTEAELQRVTAE 589
Cdd:COG3096 786 RLEELRAERDELAEQYAKASFDVQKLQRlhqafsqfvgghlavafapdpEAELAALRQRRSeleRELAQHRAQEQQLRQQ 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 590 RDALRDRLkvahstALTDREQEEFRFLDLENTIEKLErekaDLRAQVTVLKESRvvvekelkaqsAVLLQNVEEATQQRV 669
Cdd:COG3096 866 LDQLKEQL------QLLNKLLPQANLLADETLADRLE----ELREELDAAQEAQ-----------AFIQQHGKALAQLEP 924
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 670 ESSALRLLQEQMEQslsdVQHRLSVKTNELQAAHQQIDKLEEKIAdlSRHGSSQKDEVVILQNTIASLDREKDTLQDAVD 749
Cdd:COG3096 925 LVAVLQSDPEQFEQ----LQADYLQAKEQQRRLKQQIFALSEVVQ--RRPHFSYEDAVGLLGENSDLNEKLRARLEQAEE 998
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528511429 750 QKTESVVLLQQEVHRKEETLLEvrltVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDR-EVALRENR 826
Cdd:COG3096 999 ARREAREQLRQAQAQYSQYNQV----LASLKSSRDAKQQTLQELEQELEELGVQADAEAEERARIRRDElHEELSQNR 1072
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
203-300 |
2.61e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.77 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 203 QVADDRIQELQKEVAQLKLDLERAQGGIKHLNKQVEERDKEIERLNRALDGGRphdviSLEAQNISNEKLIAHLNLQIEY 282
Cdd:COG2433 402 EHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEAR-----SEERREIRKDREISRLDREIER 476
|
90
....*....|....*...
gi 528511429 283 LQETNRSLEQRVDSLQQK 300
Cdd:COG2433 477 LERELEEERERIEELKRK 494
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
504-968 |
2.73e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.05 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 504 DAELSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQE-----ELRRVQRELESSELQRRIRDDREQ 578
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkadEAKKAEEKKKADEAKKKAEEAKKA 1317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 579 TEAELQRVTAER--DALRDRLKVAHSTALTDREQEEFRFLDLENTIEK-----LEREKADLRAQVTVLKESRVVVEKELK 651
Cdd:PTZ00121 1318 DEAKKKAEEAKKkaDAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKaeaaeKKKEEAKKKADAAKKKAEEKKKADEAK 1397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 652 AQSAVLLQNVEEATQQRVESSALRLLQEQMEQSLSDVQHR-----------LSVKTNELQAAHQQIDKLEE-KIADLSRH 719
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKkkaeeakkadeAKKKAEEAKKAEEAKKKAEEaKKADEAKK 1477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 720 GSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETL--LEVRLTVTDLENSLNQLQA--VLSSRER 795
Cdd:PTZ00121 1478 KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkkAEEAKKADEAKKAEEKKKAdeLKKAEEL 1557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 796 EIASLRRQLDQSQEElfsvSRDREVALRENRRLQDdlATMTRENQAVHAEMQEALNERDELKLrvhsyiSEVARIESLMA 875
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKA----EEDKNMALRKAEEAKK--AEEARIEEVMKLYEEEKKMKAEEAKK------AEEAKIKAEEL 1625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 876 AKEQENRDMLERFRSIHTESEDKELKLQQSEGLNNSIRLELLSSDTERRHLRERVSLQDREIQEHLNALQAYEAQVSSLA 955
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
490
....*....|...
gi 528511429 956 RAMSRLEEEVQAA 968
Cdd:PTZ00121 1706 ELKKKEAEEKKKA 1718
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
649-980 |
2.87e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 2.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 649 ELKAQSAVLLQNVEEATQQRV-ESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGssqkdev 727
Cdd:pfam07888 38 ECLQERAELLQAQEAANRQREkEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASS------- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 728 vilqntiASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQS 807
Cdd:pfam07888 111 -------EELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 808 QEELFSVSRDrevaLRENRRLQDDLATMTRENQAVHAEMQEALNERDELKLRVHSYISEVARIESLMAAKEQENRDMLER 887
Cdd:pfam07888 184 EEELRSLSKE----FQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEE 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 888 FRSIHTESEDKELKLQQSEGLNNSIRLELLSSdteRRHLRERVSLQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQA 967
Cdd:pfam07888 260 LSSMAAQRDRTQAELHQARLQAAQLTLQLADA---SLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQE 336
|
330
....*....|...
gi 528511429 968 ARAEKASVLADLA 980
Cdd:pfam07888 337 ERMEREKLEVELG 349
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
346-605 |
3.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 346 ELQEAKKAIQRQQRELEGQEEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKMEGLIHFLEEDKKRLQDKIEAMMQEDK 425
Cdd:COG4942 28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 426 EMVLELERMRARhgmcgkdhspSRLDAFVKSLEEERNYYREEVERYrLVRGRTDRsptpvgrgrsprgrgswhgkrdgda 505
Cdd:COG4942 108 ELLRALYRLGRQ----------PPLALLLSPEDFLDAVRRLQYLKY-LAPARREQ------------------------- 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 506 eLSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQ-RRIRDDREQTEAELQ 584
Cdd:COG4942 152 -AEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAElAELQQEAEELEALIA 230
|
250 260
....*....|....*....|.
gi 528511429 585 RVTAERDALRDRLKVAHSTAL 605
Cdd:COG4942 231 RLEAEAAAAAERTPAAGFAAL 251
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
271-824 |
4.31e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 4.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 271 KLIAHLNLQIEYLQE---TNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLEKDKEmvletadmEL 347
Cdd:PRK03918 169 EVIKEIKRRIERLEKfikRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE--------EI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 348 QEAKKAIQRQQRELEGQEEVISTLRRDMADGDHVKDQLRNQ---LLDLQDQNNKMEGLIHFLEEDKKRLQD------KIE 418
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKvkeLKELKEKAEEYIKLSEFYEEYLDELREiekrlsRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 419 AMMQEDKEMVLELERMRARHGmcgkdhspsRLDAFVKSLEEERNYYREEVERYRLVRGRTDRsptpvgrgrsprgrGSWH 498
Cdd:PRK03918 321 EEINGIEERIKELEEKEERLE---------ELKKKLKELEKRLEELEERHELYEEAKAKKEE--------------LERL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 499 GKRDGDAELSRVVKERDELqsvllgfEKHMEDIQTRVKLLTAERDQL---SSQCQQAQEELRRVQR----------ELES 565
Cdd:PRK03918 378 KKRLTGLTPEKLEKELEEL-------EKAKEEIEEEISKITARIGELkkeIKELKKAIEELKKAKGkcpvcgreltEEHR 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 566 SELQRRIRDDREQTEAELQRVTAERDALRDRLKVAHSTALTDRE--------------QEEFRFLDLENT------IEKL 625
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESEliklkelaeqlkelEEKLKKYNLEELekkaeeYEKL 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 626 EREKADLRAQVTVLKEsRVVVEKELKAQSAVLLQNVEEATQQRveSSALRLLQEQMEQSLSDVQHRLSvktnELQAAHQQ 705
Cdd:PRK03918 531 KEKLIKLKGEIKSLKK-ELEKLEELKKKLAELEKKLDELEEEL--AELLKELEELGFESVEELEERLK----ELEPFYNE 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 706 IDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHR-KEETLLEVRLTVTDLENSLN 784
Cdd:PRK03918 604 YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEeLREEYLELSRELAGLRAELE 683
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 528511429 785 QLQAVLSSREREIASLRRQLDQSQE-----ELFSVSRDREVALRE 824
Cdd:PRK03918 684 ELEKRREEIKKTLEKLKEELEEREKakkelEKLEKALERVEELRE 728
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
207-366 |
4.96e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 207 DRIQELQKEVAQLKLDLEraqggikhlnKQVEERDKEIERlnraldggrphdvisLEAQNISNEKliaHLNLQIEYLQET 286
Cdd:PRK12704 57 EALLEAKEEIHKLRNEFE----------KELRERRNELQK---------------LEKRLLQKEE---NLDRKLELLEKR 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 287 NRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQqlEKDKEMVLETADMELqEAKKAIQRQQRELEGQEE 366
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTA--EEAKEILLEKVEEEA-RHEAAVLIKEIEEEAKEE 185
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
698-855 |
5.22e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 698 ELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEETLLEVRltvt 777
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR---- 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528511429 778 dlenSLNQLQAVlssrEREIASLRRQLDQSQEELFSVSRDREVALRENRRLQDDLATMTRENQAVHAEMQEALNERDE 855
Cdd:COG1579 87 ----NNKEYEAL----QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
533-1104 |
5.32e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 40.94 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 533 TRVKLLTAERDQLSSQCQQAQEELRRVQRELESSELQR--------------------RIRDDREQTEAELQRVTAERDA 592
Cdd:PRK10246 250 TRLDELQQEASRRQQALQQALAAEEKAQPQLAALSLAQparqlrphweriqeqsaalaHTRQQIEEVNTRLQSTMALRAR 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 593 LRDRLKVAHSTALTDR--------EQEEFRFLDLE-----NTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQ 659
Cdd:PRK10246 330 IRHHAAKQSAELQAQQqslntwlaEHDRFRQWNNElagwrAQFSQQTSDREQLRQWQQQLTHAEQKLNALPAITLTLTAD 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 660 NVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVIL------QNT 733
Cdd:PRK10246 410 EVAAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVkticeqEAR 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 734 IASLDREKDTLQDAvdqktESVVLLQQEVHRKEETLLEvrLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEELfs 813
Cdd:PRK10246 490 IKDLEAQRAQLQAG-----QPCPLCGSTSHPAVEAYQA--LEPGVNQSRLDALEKEVKKLGEEGAALRGQLDALTKQL-- 560
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 814 vSRDREvalrENRRLQDDLATMTRENQAVHAEMQEALNERDELKlrvhSYISEVARIESLMAAKEQenRDMLERFRSIHT 893
Cdd:PRK10246 561 -QRDES----EAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQ----PWLDAQEEHERQLRLLSQ--RHELQGQIAAHN 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 894 ESE---DKELKLQQSEGLN--NSIRLELLSSDTERRHLRERVSlQDREIQEHLNALQAYEAQVSSLARAMSRLEEEVQAA 968
Cdd:PRK10246 630 QQIiqyQQQIEQRQQQLLTalAGYALTLPQEDEEASWLATRQQ-EAQSWQQRQNELTALQNRIQQLTPLLETLPQSDDLP 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 969 RAEKASVLADLASVRELCVKLDSSKELTVRQLTSKSMELERVTGEL---------------------EDVRSEMELLKKQ 1027
Cdd:PRK10246 709 HSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFdtalqasvfddqqaflaalldEETLTQLEQLKQN 788
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528511429 1028 LGSERLTVrnleTLLSTNRQKEFQTHISASEKESELKVLKDRLALADSKTAGHAREVSQLRGKVSQlQTEMDVLKRQ 1104
Cdd:PRK10246 789 LENQRQQA----QTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQ-QLKQDADNRQ 860
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
197-399 |
5.57e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 5.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 197 YIADLLQV----ADDRIQELQKEVAQLKLDLERAQggikhlnkqveerdKEIERLNRAldggrpHDVISLEAQNISNEKL 272
Cdd:COG3206 161 YLEQNLELrreeARKALEFLEEQLPELRKELEEAE--------------AALEEFRQK------NGLVDLSEEAKLLLQQ 220
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 273 IAHLNLQIEYLQETNRSLEQRVDSLQQKKKTVSSEVADLSArNQELCQELTQIDQLAQQLEKDKEMVLETADmELQEAKK 352
Cdd:COG3206 221 LSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQ-SPVIQQLRAQLAELEAELAELSARYTPNHP-DVIALRA 298
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 528511429 353 AIQRQQRELEGQ-EEVISTLRRDMADGDHVKDQLRNQLLDLQDQNNKM 399
Cdd:COG3206 299 QIAALRAQLQQEaQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
622-1040 |
5.76e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 622 IEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEATQQRVESSALRLLQEQMEQSLSDVQHRLSVKTNELQA 701
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 702 --AHQQIDKLEEKIADLS---RHGSSQKDEVVILQNTIASLDREKDTLQDAVDQktesvvLLQQEVHRKEETLLEVRLTV 776
Cdd:COG4717 128 lpLYQELEALEAELAELPerlEELEERLEELRELEEELEELEAELAELQEELEE------LLEQLSLATEEELQDLAEEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 777 TDLENSLNQLQAVLSSREREIASLRRQLDQSQEELFSVSRDREvaLRENRRLQDDLATMTRENQAVHAEMQEALNERDEL 856
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER--LKEARLLLLIAAALLALLGLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 857 KLRVhSYISEVARIESLMAAKEQENRDMLERFRSIHTESEDKELKLQQSEGLNNSIRLELLSSDTERRHLRERVSLQDRE 936
Cdd:COG4717 280 FLVL-GLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEE 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 937 IQEHLNALQAYEAQVSSLARAMSRLEEEVQAARAEKASVLADLASVRELCVKLDSSKELTVRQLTSKS-----MELERVT 1011
Cdd:COG4717 359 LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeeleEELEELE 438
|
410 420
....*....|....*....|....*....
gi 528511429 1012 GELEDVRSEMELLKKQLGSERLTVRNLET 1040
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQLEE 467
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
608-871 |
6.78e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 608 REQEEFRFLDLENTIEKLEREKADLRAQvtvLKESRVVVEKELKAQSAVLLQNVEEATQQRVEssalrllqeQMEQSLSD 687
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKE---LEEAEAALEEFRQKNGLVDLSEEAKLLLQQLS---------ELESQLAE 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 688 VQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKdevviLQNTIASLDREKDTLQDAVDQKTESVVLLQQEVHRKEE 767
Cdd:COG3206 231 ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQ-----LRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 768 TLL-EVRLTVTDLENSLNQLQAVLSSREREIASLRRQLDQSQEelfsvsrdrevalrenrrLQDDLATMTRENQAVHAEM 846
Cdd:COG3206 306 QLQqEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPE------------------LEAELRRLEREVEVARELY 367
|
250 260
....*....|....*....|....*
gi 528511429 847 QEALNERDELKLRVHSYISEVARIE 871
Cdd:COG3206 368 ESLLQRLEEARLAEALTVGNVRVID 392
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
279-350 |
7.51e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 40.05 E-value: 7.51e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528511429 279 QIEYLQETNRSLEQRVDSLQQKKKTVSSEVADLSARNQELCQELTQIDQLAQQLeKDKEMVLETADMELQEA 350
Cdd:PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEI-KALEAELDELEAELEEL 99
|
|
| CCCAP |
pfam15964 |
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in ... |
507-853 |
7.88e-03 |
|
Centrosomal colon cancer autoantigen protein family; CCCAP is a family of proteins found in eukaryotes. CCCAP is also known as SDCCAG8, serologically defined colon cancer antigen 8. It is associated with the centrosome.
Pssm-ID: 435040 [Multi-domain] Cd Length: 703 Bit Score: 40.27 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 507 LSRVVKERDELQSVLLGFEKHMEDIQTRVKLLTAERDQLSSQCQQAQEELRR--VQRELESSELQRRIRDDREQTEAELQ 584
Cdd:pfam15964 302 IERLTKERDDLMSALVSVRSSLAEAQQRESSAYEQVKQAVQMTEEANFEKTKalIQCEQLKSELERQKERLEKELASQQE 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 585 RVTAERDALRDRLKVAHSTALTDREQEEFRFLDLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSAVLLQNVEEA 664
Cdd:pfam15964 382 KRAQEKEALRKEMKKEREELGATMLALSQNVAQLEAQVEKVTREKNSLVSQLEEAQKQLASQEMDVTKVCGEMRYQLNQT 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 665 TQQRVESsalrllQEQMEQSLSDVQHRLSVKTNELQAAHQQIDKLEEKIADLSRHGSSQKDEVVILQNTIASLDR----- 739
Cdd:pfam15964 462 KMKKDEA------EKEHREYRTKTGRQLEIKDQEIEKLGLELSESKQRLEQAQQDAARAREECLKLTELLGESEHqlhlt 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 740 --EKDTLQDAVDQKTESVVLlqQEVHRKEETLLEVRLTVTDLENSLNQLQAVLSSREREIASLRRQ---LDQSQEELFSV 814
Cdd:pfam15964 536 rlEKESIQQSFSNEAKAQAL--QAQQREQELTQKMQQMEAQHDKTVNEQYSLLTSQNTFIAKLKEEcctLAKKLEEITQK 613
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 528511429 815 SRDREVAL-RENRRLQDDLATMTRENQAV------HAEMQEALNER 853
Cdd:pfam15964 614 SRSEVEQLsQEKEYLQDRLEKLQKRNEELeeqcvqHGRMHERMKQR 659
|
|
| PRK11519 |
PRK11519 |
tyrosine-protein kinase Wzc; |
617-809 |
8.66e-03 |
|
tyrosine-protein kinase Wzc;
Pssm-ID: 183173 [Multi-domain] Cd Length: 719 Bit Score: 40.14 E-value: 8.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 617 DLENTIEKLEREKADLRAQVTVLKESRVVVEKELKAQSA-VLLQNVEEATQQRVESsaLRLLQEQmeqsLSDVQHRLSVK 695
Cdd:PRK11519 213 NLQNNLTVTENGKDTGVLSLTYTGEDREQIRDILNSITRnYLEQNIERKSEEASKS--LAFLAQQ----LPEVRSRLDVA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528511429 696 TNELQAAHQQIDKLeekiaDLSRHGSSQKDEVVILQNTIASLdrekdTLQDAVDQKtesvvlLQQEVHRKEETLLEVRLT 775
Cdd:PRK11519 287 ENKLNAFRQDKDSV-----DLPLEAKAVLDSMVNIDAQLNEL-----TFKEAEISK------LYTKEHPAYRTLLEKRKA 350
|
170 180 190
....*....|....*....|....*....|....
gi 528511429 776 VTDLENSLNQLQAVLSSREREIASLRRQLDQSQE 809
Cdd:PRK11519 351 LEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQ 384
|
|
| |
