|
Name |
Accession |
Description |
Interval |
E-value |
| Filament |
pfam00038 |
Intermediate filament protein; |
27-383 |
1.43e-99 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 307.23 E-value: 1.43e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 27 QEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAYEAELADARKTLDSVAKERARLQLELSKV 106
Cdd:pfam00038 1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 107 REDYKELKARNGKKeadlesalarlkdlesllnskdaslstaLGEKRTLEVEVRDLKaqlaklegslndakKQLQDEMLR 186
Cdd:pfam00038 81 RLAAEDFRQKYEDE----------------------------LNLRTSAENDLVGLR--------------KDLDEATLA 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 187 RVDAENRIQTLKEELEFQKNIYSEELRESKRR--YESRVVEIDSGRQQDyeskLADALTDLRNQHEEQLRIYKEEIEKTY 264
Cdd:pfam00038 119 RVDLEAKIESLKEELAFLKKNHEEEVRELQAQvsDTQVNVEMDAARKLD----LTSALAEIRAQYEEIAAKNREEAEEWY 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 265 NSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAE 344
Cdd:pfam00038 195 QSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQELISELEAELQE 274
|
330 340 350
....*....|....*....|....*....|....*....
gi 528504246 345 MRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEER 383
Cdd:pfam00038 275 TRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
|
|
| LTD |
pfam00932 |
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ... |
452-559 |
1.15e-18 |
|
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.
Pssm-ID: 460003 [Multi-domain] Cd Length: 108 Bit Score: 81.70 E-value: 1.15e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 452 ASASGRVTVDEVDLEG-----KFVRLNNKSDQDQSLGHWQVKRQIGSgtpiVYKFPPKFNLKAGQTVTIWAAG----AGG 522
Cdd:pfam00932 1 SSATGDVVISEVVYDGsggndEFIELYNTGSKAVDLSGWKLQDASGG----TYTFPNGTTLAPGQTVVVWTGSgtnsATA 76
|
90 100 110
....*....|....*....|....*....|....*..
gi 528504246 523 THSPPSDLVWKTQNSWgsgdlfqTTLISSSGEEMAMR 559
Cdd:pfam00932 77 GYWGPSNAVWNNGGDA-------VALYDANGELVDSV 106
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
94-383 |
1.07e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.05 E-value: 1.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 94 KERARLQLELSKVRedYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSL 173
Cdd:COG1196 220 EELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 174 NDAKKQLQDEMLRRVDAENRIQTLKEELEfQKNIYSEELRESKRRYESRVVEIDSgRQQDYESKLADALTDLRNQHEEQL 253
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELA-ELEEELEELEEELEELEEELEEAEE-ELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 254 RIyKEEIEKTYNSKLENARSSAERNSHLVGAAhEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALsRERDILRR 333
Cdd:COG1196 376 EA-EEELEELAEELLEALRAAAELAAQLEELE-EAEEALLERLERLEEELEELEEALAELEEEEEEEEEAL-EEAAEEEA 452
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 528504246 334 RLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEER 383
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEAD 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
69-358 |
1.36e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.67 E-value: 1.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 69 RELSGMKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTA 148
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 149 LGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRESKRRYESRVVEIDs 228
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR- 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 229 gRQQDYESKLADALTDLRNQHEEQLRIYKEEIEktynsklenARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQK 308
Cdd:COG1196 394 -AAAELAAQLEELEEAEEALLERLERLEEELEE---------LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 528504246 309 QLAAREAKIRELEEALSRerdilRRRLEDKEKEMAEMRQRMQQQLDEYQE 358
Cdd:COG1196 464 LLAELLEEAALLEAALAE-----LLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
66-378 |
2.19e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.03 E-value: 2.19e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 66 EISRELSGMkAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEadlesalaRLKDLESLLnsKDASL 145
Cdd:TIGR02169 157 KIIDEIAGV-AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE--------RYQALLKEK--REYEG 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 146 STALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELefqKNIYSEELRESKRRYESRVVE 225
Cdd:TIGR02169 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI---KDLGEEEQLRVKEKIGELEAE 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 226 IDSGR--QQDYESKLADAltdlrnqhEEQLRIYKEEIEKTyNSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQL 303
Cdd:TIGR02169 303 IASLErsIAEKERELEDA--------EERLAKLEAEIDKL-LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 304 SQLQKQLAAREAKIRELEEALS----------RERDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAY 373
Cdd:TIGR02169 374 EEVDKEFAETRDELKDYREKLEklkreinelkRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ 453
|
....*
gi 528504246 374 RKLLE 378
Cdd:TIGR02169 454 EWKLE 458
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
60-385 |
1.64e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 1.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 60 ITESETEIsRELSGMKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLN 139
Cdd:TIGR02168 672 ILERRREI-EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 140 SKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDemlrrvdAENRIQTLKEELEFQKNIYSE---ELRESK 216
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ-------LKEELKALREALDELRAELTLlneEAANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 217 RRYESRVVEIDSGRQQdyeskladaLTDLRNQHEEQlriyKEEIEKtYNSKLENARSSAERnshlvgaAHEELQQTRVRM 296
Cdd:TIGR02168 824 ERLESLERRIAATERR---------LEDLEEQIEEL----SEDIES-LAAEIEELEELIEE-------LESELEALLNER 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 297 EGVSSQLSQLQKQLAAREAKIRELEEALSRERDiLRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDME-ISAYRK 375
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRR-ELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEeAEALEN 961
|
330
....*....|
gi 528504246 376 LLEGEEERLR 385
Cdd:TIGR02168 962 KIEDDEEEAR 971
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
29-354 |
7.22e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 7.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 29 KEDLSNLndRLAVYIDKVRSLEVENAGLRMRITESETEIsRELSGMKAAYEAELADARKTLDSVAKERARLQlelskvrE 108
Cdd:TIGR02168 219 KAELREL--ELALLVLRLEELREELEELQEELKEAEEEL-EELTAELQELEEKLEELRLEVSELEEEIEELQ-------K 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 109 DYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRV 188
Cdd:TIGR02168 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 189 DAENRIQTLKEELEFQKNIYSEELREskrryesrvVEIDSGRQQDYESKLADAltdlrnqhEEQLRIYKEEIEKTYNSKL 268
Cdd:TIGR02168 369 ELESRLEELEEQLETLRSKVAQLELQ---------IASLNNEIERLEARLERL--------EDRRERLQQEIEELLKKLE 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 269 ENARSSAERNSHLVGAAHEELQQTRVRMEgvsSQLSQLQKQLAAREAKIRELEEALSRER---DILRRRLEDKEKEMAEM 345
Cdd:TIGR02168 432 EAELKELQAELEELEEELEELQEELERLE---EALEELREELEEAEQALDAAERELAQLQarlDSLERLQENLEGFSEGV 508
|
....*....
gi 528504246 346 RQRMQQQLD 354
Cdd:TIGR02168 509 KALLKNQSG 517
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
42-385 |
1.33e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.76 E-value: 1.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 42 YIDKVRSLEVENAGLRMRITESETEIS------RELSGMKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKA 115
Cdd:PRK02224 347 LREDADDLEERAEELREEAAELESELEeareavEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 116 RNGKKEADLESALARLKDLESLLNS----------KDASLSTALGEKR----TLEVEVRDLKAQLAKLEGSLNDAK---- 177
Cdd:PRK02224 427 REAELEATLRTARERVEEAEALLEAgkcpecgqpvEGSPHVETIEEDRerveELEAELEDLEEEVEEVEERLERAEdlve 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 178 --KQLQDEMLRRVDAENRIQTLKEELEfQKNIYSEELRESKRRYESRVVEI--DSGRQQDYESKLADALTDLrnqhEEQL 253
Cdd:PRK02224 507 aeDRIERLEERREDLEELIAERRETIE-EKRERAEELRERAAELEAEAEEKreAAAEAEEEAEEAREEVAEL----NSKL 581
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 254 RIYKEEIEktynsKLENARSSAErnshLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRErdilrr 333
Cdd:PRK02224 582 AELKERIE-----SLERIRTLLA----AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA------ 646
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 528504246 334 RLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEgEEERLR 385
Cdd:PRK02224 647 RIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE-ELEELR 697
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
27-383 |
2.18e-11 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 66.24 E-value: 2.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 27 QEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSgMKAAYEAELADARKTLDSVAKERARLQLELSKV 106
Cdd:pfam19220 3 QRNELLRVRLGEMADRLEDLRSLKADFSQLIEPIEAILRELPQAKS-RLLELEALLAQERAAYGKLRRELAGLTRRLSAA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 107 REDYKELKARNGKKEADLESALA-------RLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGslndakkq 179
Cdd:pfam19220 82 EGELEELVARLAKLEAALREAEAakeelriELRDKTAQAEALERQLAAETEQNRALEEENKALREEAQAAEK-------- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 180 lqdemlRRVDAENRIQTLKEELEfqknIYSEELRESKRRYESRVVEIDS--GRQQDYESKLADALTDLRNQHEEQLRIYK 257
Cdd:pfam19220 154 ------ALQRAEGELATARERLA----LLEQENRRLQALSEEQAAELAEltRRLAELETQLDATRARLRALEGQLAAEQA 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 258 EEIEKTYNSKLENARSSAERNShlvgaAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEAL---SRERDILRRR 334
Cdd:pfam19220 224 ERERAEAQLEEAVEAHRAERAS-----LRMKLEALTARAAATEQLLAEARNQLRDRDEAIRAAERRLkeaSIERDTLERR 298
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 528504246 335 LEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEER 383
Cdd:pfam19220 299 LAGLEADLERRTQQFQEMQRARAELEERAEMLTKALAAKDAALERAEER 347
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
94-359 |
2.40e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 2.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 94 KERARLQLELSKVRedYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSL 173
Cdd:TIGR02168 220 AELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 174 NDAKKQLQ--DEMLRRVDAEN-RIQTLKEELEFQKNIYSEELRESKRRYESRVVEIDSGRQQDYESK-----LADALTDL 245
Cdd:TIGR02168 298 SRLEQQKQilRERLANLERQLeELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEaeleeLESRLEEL 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 246 RNQHEEQLRIYKEEIEKTY--NSKLENARSSAERNSHLVGAAHEELQQtrVRMEGVSSQLSQLQKQLAAREAKIRELEEA 323
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQIAslNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEE 455
|
250 260 270
....*....|....*....|....*....|....*.
gi 528504246 324 LSRerdiLRRRLEDKEKEMAEMRQRMQQQLDEYQEL 359
Cdd:TIGR02168 456 LER----LEEALEELREELEEAEQALDAAERELAQL 487
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
93-349 |
5.19e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.79 E-value: 5.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 93 AKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGS 172
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 173 LNDAKKQLQdEMLRRVDAENRIQTLKEELEfqkniySEELRESKRRYEsrvveidsgrqqdyeskLADALTDLRNQHEEQ 252
Cdd:COG4942 99 LEAQKEELA-ELLRALYRLGRQPPLALLLS------PEDFLDAVRRLQ-----------------YLKYLAPARREQAEE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 253 LRIYKEEIEKTyNSKLENARSSAErnshlvgAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILR 332
Cdd:COG4942 155 LRADLAELAAL-RAELEAERAELE-------ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE 226
|
250
....*....|....*..
gi 528504246 333 RRLEDKEKEMAEMRQRM 349
Cdd:COG4942 227 ALIARLEAEAAAAAERT 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
119-400 |
1.20e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 63.63 E-value: 1.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 119 KKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDemlrrvdAENRIQTLK 198
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAE-------LEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 199 EELEFQKNIYSEELRESkrryesrvveidsgrqqdYESKLADALTDLRNQHEEQLRIYKEEIEKTYNSKLENARssaern 278
Cdd:COG4942 97 AELEAQKEELAELLRAL------------------YRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA------ 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 279 shlvgaahEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQRMQQQLDEYQE 358
Cdd:COG4942 153 --------EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 528504246 359 LLDIKLALDMEISAYRKLLEGEEERLRLSPSPPPARGVTVTR 400
Cdd:COG4942 225 LEALIARLEAEAAAAAERTPAAGFAALKGKLPWPVSGRVVRR 266
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
8-330 |
2.50e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 2.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 8 RSSRGGVTNVLSPTR-ISRLQEK-----EDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAA---- 77
Cdd:TIGR02168 663 GGSAKTNSSILERRReIEELEEKieeleEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLeaev 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 78 --YEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTL 155
Cdd:TIGR02168 743 eqLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 156 EVEVRDLKAQLAKLEGSLNDA---KKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRESKRRYESRVVEID--SGR 230
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLeeqIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEelSEE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 231 QQDYESKLADALTDLR--NQHEEQLRIYKEEIEKTYNSKLENARSSAERNSHLVGA------------------------ 284
Cdd:TIGR02168 903 LRELESKRSELRRELEelREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEAlenkieddeeearrrlkrlenkik 982
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 528504246 285 --------AHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIREL-EEALSRERDI 330
Cdd:TIGR02168 983 elgpvnlaAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIdREARERFKDT 1037
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
18-358 |
5.30e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.48 E-value: 5.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 18 LSPTRISRLQEKEDLSNLNDRLAV---YIDKVRSLEVENAGLRMRITESETEISRELSGMKAAYEAELADARKTLDSVAK 94
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEEleeRLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 95 ERARLQLELSKVREDYKELKARNGKKEADLESA--LARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLA----- 167
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAalEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLvlgll 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 168 --------KLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRESKRRYESRVVEIDSGRQQDYESKLA 239
Cdd:COG4717 287 allflllaREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLE 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 240 DALTDLRN--------------QHEEQLRIYKEEIEK--TYNSKLENARSSAERNSHLVGAA--HEELQQTRVRMEGVSS 301
Cdd:COG4717 367 ELEQEIAAllaeagvedeeelrAALEQAEEYQELKEEleELEEQLEELLGELEELLEALDEEelEEELEELEEELEELEE 446
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528504246 302 QLSQLQKQLAAREAKIRELEE-----ALSRERDILRRRLEDKEKEMAEMR---QRMQQQLDEYQE 358
Cdd:COG4717 447 ELEELREELAELEAELEQLEEdgelaELLQELEELKAELRELAEEWAALKlalELLEEAREEYRE 511
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
22-384 |
1.35e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.23 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 22 RISRLQEK-EDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESET--EISRELSGMKAAYEA-ELADARKTLDSVAKERA 97
Cdd:PRK03918 322 EINGIEERiKELEEKEERLEELKKKLKELEKRLEELEERHELYEEakAKKEELERLKKRLTGlTPEKLEKELEELEKAKE 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 98 RLQLELSKVREDYKELKarngKKEADLESALARLK----------------DLESLLNSKDASLSTALGEKRTLEVEVRD 161
Cdd:PRK03918 402 EIEEEISKITARIGELK----KEIKELKKAIEELKkakgkcpvcgrelteeHRKELLEEYTAELKRIEKELKEIEEKERK 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 162 LKAQLAKLEGSLNDakkqlQDEMLRRVDAENRIQTLKEELefqKNIYSEELRESKRRYES------------RVVEIDSG 229
Cdd:PRK03918 478 LRKELRELEKVLKK-----ESELIKLKELAEQLKELEEKL---KKYNLEELEKKAEEYEKlkekliklkgeiKSLKKELE 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 230 RQQDYESKLADALTDLRNQHEEQLRIYKEEIEKTYNSKLENARSSAERnshlvgaahEELQQTRVRMEGVSSQLSQLQKQ 309
Cdd:PRK03918 550 KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKEL---------EPFYNEYLELKDAEKELEREEKE 620
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528504246 310 LAAREAKIRELEEALSRerdiLRRRLEDKEKEMAEMRQRMQQqlDEYQELLDIKLALDMEISAYRKLLEGEEERL 384
Cdd:PRK03918 621 LKKLEEELDKAFEELAE----TEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRR 689
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
29-321 |
3.45e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.08 E-value: 3.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 29 KEDLSNLNDRLAVYIDKVRSLEVEnaglrMRITESETEISRELSGMKAAYEaELADARKTLDSVAKErarlqlELSKVRE 108
Cdd:PRK03918 458 TAELKRIEKELKEIEEKERKLRKE-----LRELEKVLKKESELIKLKELAE-QLKELEEKLKKYNLE------ELEKKAE 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 109 DYKELKARNGKKEADLESALARLKDLESLLNskdaslstalgEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMlrrv 188
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKLEELKK-----------KLAELEKKLDELEEELAELLKELEELGFESVEEL---- 590
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 189 daENRIQTLKEelefqknIYSE--ELRESKRRYESRVVEIDSGRQQ--DYESKLADALTD---LRNQHEEQLRIYKEEie 261
Cdd:PRK03918 591 --EERLKELEP-------FYNEylELKDAEKELEREEKELKKLEEEldKAFEELAETEKRleeLRKELEELEKKYSEE-- 659
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 262 ktynsKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELE 321
Cdd:PRK03918 660 -----EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
22-384 |
5.58e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.31 E-value: 5.58e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 22 RISRLQE-KEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEIS-------------------RELSGMKAAYEAE 81
Cdd:PRK03918 229 EVKELEElKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEeleekvkelkelkekaeeyIKLSEFYEEYLDE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 82 LADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEaDLESALARLKDLESLLNSKDASLSTALG-EKRTLEVEVR 160
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLK-ELEKRLEELEERHELYEEAKAKKEELERlKKRLTGLTPE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 161 DLKAQLAKLEgslnDAKKQLQDEMLRRVDAENRIQTLKEELEfqKNIysEELRESKRRYESRVVEIDSGRQQD----YES 236
Cdd:PRK03918 388 KLEKELEELE----KAKEEIEEEISKITARIGELKKEIKELK--KAI--EELKKAKGKCPVCGRELTEEHRKElleeYTA 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 237 KLADALTDLR--NQHEEQLRIYKEEIEKTYNSK------------LENARSSAER-NSHLVGAAHEELQQTRVRMEGVSS 301
Cdd:PRK03918 460 ELKRIEKELKeiEEKERKLRKELRELEKVLKKEseliklkelaeqLKELEEKLKKyNLEELEKKAEEYEKLKEKLIKLKG 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 302 QLS----------QLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKlaldMEIS 371
Cdd:PRK03918 540 EIKslkkelekleELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAE----KELE 615
|
410
....*....|...
gi 528504246 372 AYRKLLEGEEERL 384
Cdd:PRK03918 616 REEKELKKLEEEL 628
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
189-385 |
9.56e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 9.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 189 DAENRIQTLKEELEfqkniyseELRESKRRYESRVVEIDsgRQQDYESKLADALTDLRNQHEEQLRI--YKEEIEKtyns 266
Cdd:COG4913 607 DNRAKLAALEAELA--------ELEEELAEAEERLEALE--AELDALQERREALQRLAEYSWDEIDVasAEREIAE---- 672
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 267 kLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMR 346
Cdd:COG4913 673 -LEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL 751
|
170 180 190
....*....|....*....|....*....|....*....
gi 528504246 347 QRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEERLR 385
Cdd:COG4913 752 EERFAAALGDAVERELRENLEERIDALRARLNRAEEELE 790
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
5-359 |
1.14e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 5 GQKRSSRGGVTNVLS-PTRISRLQEK-EDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAYEA-- 80
Cdd:TIGR02169 657 GGSRAPRGGILFSRSePAELQRLRERlEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKlk 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 81 ---------------ELADARKTLDSVAKERARLQLELSKVREDYKELKARNG------------KKEADLESALARLKD 133
Cdd:TIGR02169 737 erleeleedlssleqEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLShsripeiqaelsKLEEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 134 LESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEEL-EFQKNIysEEL 212
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLgDLKKER--DEL 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 213 RESKRRYESRVVEIDSGRQQdyeskladaltdlrnqheeqlriyKEEIEKTYNSKLENArssAERNSHLvgaahEELQQT 292
Cdd:TIGR02169 895 EAQLRELERKIEELEAQIEK------------------------KRKRLSELKAKLEAL---EEELSEI-----EDPKGE 942
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528504246 293 RVRMEGVSSQLSQLQKQLAAREAKIRELEE----ALSRERDILRRRLEDKEKEMAEMRQR--MQQQLDEYQEL 359
Cdd:TIGR02169 943 DEEIPEEELSLEDVQAELQRVEEEIRALEPvnmlAIQEYEEVLKRLDELKEKRAKLEEERkaILERIEEYEKK 1015
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
44-384 |
1.74e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.88 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 44 DKVRSLEVENAGLRMRITESETEISRELSGMKAAyEAELADARKTLDSvakERARLQLELSKVREDYKELKARNGKKEAD 123
Cdd:pfam01576 338 EETRSHEAQLQEMRQKHTQALEELTEQLEQAKRN-KANLEKAKQALES---ENAELQAELRTLQQAKQDSEHKRKKLEGQ 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 124 LESALARLKDLE----------SLLNSKDASLSTALGEkrtLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENR 193
Cdd:pfam01576 414 LQELQARLSESErqraelaeklSKLQSELESVSSLLNE---AEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTR 490
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 194 IQTLKEELEFQKNIYSEElRESKRRYESRVveidsgrqqdyeSKLADALTDLRNQHEEQLRIYK--EEIEKTYNSKLENA 271
Cdd:pfam01576 491 LRQLEDERNSLQEQLEEE-EEAKRNVERQL------------STLQAQLSDMKKKLEEDAGTLEalEEGKKRLQRELEAL 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 272 RSSAERNShlvgAAHEELQQTRVRMEG----VSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQ 347
Cdd:pfam01576 558 TQQLEEKA----AAYDKLEKTKNRLQQelddLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEARE 633
|
330 340 350
....*....|....*....|....*....|....*..
gi 528504246 348 RMQQQLDEYQELLDIKLALDmEISAYRKLLEGEEERL 384
Cdd:pfam01576 634 KETRALSLARALEEALEAKE-ELERTNKQLRAEMEDL 669
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
56-386 |
2.42e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.38 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 56 LRMRITESETEISRE--LSGMKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKkeadlesalarlkd 133
Cdd:PRK03918 174 IKRRIERLEKFIKRTenIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEE-------------- 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 134 leslLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELR 213
Cdd:PRK03918 240 ----IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 214 ESKRRYESRVVEidsgRQQDYESKLADALTDLRNQHEEQLRIYK--EEIEKTYN---SKLENARS-SAERNSHLVGAAHE 287
Cdd:PRK03918 316 LSRLEEEINGIE----ERIKELEEKEERLEELKKKLKELEKRLEelEERHELYEeakAKKEELERlKKRLTGLTPEKLEK 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 288 ELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERD------ILRRRLEDKEKE--MAEMRQRMQQQLDEYQEL 359
Cdd:PRK03918 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpVCGRELTEEHRKelLEEYTAELKRIEKELKEI 471
|
330 340
....*....|....*....|....*..
gi 528504246 360 LDIKLALDMEISAYRKLLEGEEERLRL 386
Cdd:PRK03918 472 EEKERKLRKELRELEKVLKKESELIKL 498
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
121-363 |
2.43e-08 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 57.61 E-value: 2.43e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 121 EADLESALARLKDLEsLLNSKDASLSTALGEkrTLevevrDLKAQLAKLEGSLNDAKKQLQDemlrrvdAENRIQTLKEE 200
Cdd:PRK11281 38 EADVQAQLDALNKQK-LLEAEDKLVQQDLEQ--TL-----ALLDKIDRQKEETEQLKQQLAQ-------APAKLRQAQAE 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 201 LEFQKNIYSEELREskrRYESRVVEidsgrqqDYESKLADALTDLrNQHEEQLriykeeieKTYNSKLENARSSAERNSH 280
Cdd:PRK11281 103 LEALKDDNDEETRE---TLSTLSLR-------QLESRLAQTLDQL-QNAQNDL--------AEYNSQLVSLQTQPERAQA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 281 LVGAAHEELQQTRVRMEGVS--------SQLSQLQKQLAAREAKIrELEEALSRERDILRRRLEDKEKEMAEMRQRMQQQ 352
Cdd:PRK11281 164 ALYANSQRLQQIRNLLKGGKvggkalrpSQRVLLQAEQALLNAQN-DLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQ 242
|
250
....*....|.
gi 528504246 353 LDEYQELLDIK 363
Cdd:PRK11281 243 LQLLQEAINSK 253
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
84-390 |
3.76e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.85 E-value: 3.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 84 DARKTLDSVAKERARLQLELSKVREDYKELKARngkkEADLESALARLKDLESLLNSkDASLSTALGEKRTLEVEVRDLK 163
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAE----LDALQERREALQRLAEYSWD-EIDVASAEREIAELEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 164 A---QLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFqkniYSEELRESKRRYESRVVEIDSGRQQDYESKLAD 240
Cdd:COG4913 682 AssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQ----AEEELDELQDRLEAAEDLARLELRALLEERFAA 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 241 ALTDlrNQHEEQLRIYKEEIEKtYNSKLENARssaernSHLVGAAHEELQQTRVRMEGVSsqlsqlqkqlaareAKIREL 320
Cdd:COG4913 758 ALGD--AVERELRENLEERIDA-LRARLNRAE------EELERAMRAFNREWPAETADLD--------------ADLESL 814
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 321 EEALSRERDILRRRLEDKEKEMAEMRQRmqqqlDEYQELLDIKLALDMEISAYRKLLE-----------GEEERLRLSPS 389
Cdd:COG4913 815 PEYLALLDRLEEDGLPEYEERFKELLNE-----NSIEFVADLLSKLRRAIREIKERIDplndslkripfGPGRYLRLEAR 889
|
.
gi 528504246 390 P 390
Cdd:COG4913 890 P 890
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
27-362 |
1.07e-07 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 55.29 E-value: 1.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 27 QEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRelsgMKAAYEAELADARKTLDSVAKERARLQLELSKV 106
Cdd:PRK01156 346 SRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIER----MSAFISEILKIQEIDPDAIKKELNEINVKLQDI 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 107 REDYKELKARNGKKEADLESALARLKDLESllNSKDASLSTALGEKRTLEVeVRDLKAQLAKLEGSLNDAKKQLQDEMLR 186
Cdd:PRK01156 422 SSKVSSLNQRIRALRENLDELSRNMEMLNG--QSVCPVCGTTLGEEKSNHI-INHYNEKKSRLEEKIREIEIEVKDIDEK 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 187 RVDAENRIQTLKEElEFQKNIYSEELRESKRrYESRVVEIDSGRQQDYESKLADALTDLRNQHEEQLRIYKEEIEKTY-- 264
Cdd:PRK01156 499 IVDLKKRKEYLESE-EINKSINEYNKIESAR-ADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALav 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 265 --NSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSS----QLSQLQKQLAAREAKIRELEEaLSRERDILRRRLEDK 338
Cdd:PRK01156 577 isLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSyidkSIREIENEANNLNNKYNEIQE-NKILIEKLRGKIDNY 655
|
330 340
....*....|....*....|....
gi 528504246 339 EKEMAEMRQRMQQQLDEYQELLDI 362
Cdd:PRK01156 656 KKQIAEIDSIIPDLKEITSRINDI 679
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
71-383 |
1.70e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.66 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 71 LSGMKAAYEA-ELADARKTLDSVAKERARLQLELSKVREdyKELKARNGKKEADL-----ESALARLKDLESLLNSKDAS 144
Cdd:PRK02224 189 LDQLKAQIEEkEEKDLHERLNGLESELAELDEEIERYEE--QREQARETRDEADEvleehEERREELETLEAEIEDLRET 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 145 LSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDE-------MLRRVDAENRIQTLKEELEFQK------NIYSEE 211
Cdd:PRK02224 267 IAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDdadaeavEARREELEDRDEELRDRLEECRvaaqahNEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 212 LRESKRRYESRVVEIDSgRQQDYESKLADALTDLRNQhEEQLRIYKEEIE------------------------------ 261
Cdd:PRK02224 347 LREDADDLEERAEELRE-EAAELESELEEAREAVEDR-REEIEELEEEIEelrerfgdapvdlgnaedfleelreerdel 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 262 ----KTYNSKLENARSSAERNSHLV-------------GAAH-EELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEA 323
Cdd:PRK02224 425 rereAELEATLRTARERVEEAEALLeagkcpecgqpveGSPHvETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL 504
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528504246 324 --LSRERDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEER 383
Cdd:PRK02224 505 veAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
135-460 |
2.33e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 53.30 E-value: 2.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 135 ESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRE 214
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 215 SKRryesrvveidSGRQQDYESKL------------ADALTDLRNQHEEQLRIYKEEIEktynsKLENARSSAErnshlv 282
Cdd:COG3883 95 LYR----------SGGSVSYLDVLlgsesfsdfldrLSALSKIADADADLLEELKADKA-----ELEAKKAELE------ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 283 gAAHEELQQTRVRMEgvsSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDI 362
Cdd:COG3883 154 -AKLAELEALKAELE---AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAA 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 363 KLALDMEISAYRKLLEGEEERLRLSPSPPPARGVTVTRSSGSGSHTRVVQSSTSRTSSGSAKKRRLNDNDSDASSVVGGT 442
Cdd:COG3883 230 AAAAAAAAAAAAAAASAAGAGAAGAAGAAAGSAGAAGAAAGAAGAGAAAASAAGGGAGGAGGGGGGGGAASGGSGGGSGG 309
|
330
....*....|....*...
gi 528504246 443 VTRTRISQQASASGRVTV 460
Cdd:COG3883 310 AGGVGSGGGAGAVVGGAS 327
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
79-227 |
2.83e-07 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 51.85 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 79 EAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSkdaslstALGEKrtlevE 158
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGN-------VRNNK-----E 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528504246 159 VRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKniysEELRESKRRYESRVVEID 227
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELE----AELEEKKAELDEELAELE 155
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
70-385 |
4.94e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.26 E-value: 4.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 70 ELSGMKAAYEAELADARKTLDSV-----AKERARLQLELS----KVREDyKELKARNGKKEADLESALARLKDLESLLNS 140
Cdd:pfam01576 682 ELERSKRALEQQVEEMKTQLEELedelqATEDAKLRLEVNmqalKAQFE-RDLQARDEQGEEKRRQLVKQVRELEAELED 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 141 KDASLSTALGEKRTLEVEVRDLKA--------------QLAKLEGSLNDAKKQLQDEMLRRVDA-------ENRIQTLKE 199
Cdd:pfam01576 761 ERKQRAQAVAAKKKLELDLKELEAqidaankgreeavkQLKKLQAQMKDLQRELEEARASRDEIlaqskesEKKLKNLEA 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 200 E-LEFQKNIYSEE--------------------------LRESKRRYESRVVEIDsgRQQDYESKLADALTDLRNQHEEQ 252
Cdd:pfam01576 841 ElLQLQEDLAASErarrqaqqerdeladeiasgasgksaLQDEKRRLEARIAQLE--EELEEEQSNTELLNDRLRKSTLQ 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 253 LRIYKEEI--EKTYNSKLENARSSAERNSHLVGAAHEELQQTrVRmegvssqlSQLQKQLAAREAKIRELEEAL---SRE 327
Cdd:pfam01576 919 VEQLTTELaaERSTSQKSESARQQLERQNKELKAKLQEMEGT-VK--------SKFKSSIAALEAKIAQLEEQLeqeSRE 989
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528504246 328 RDI---LRRRLEDKEKEMAEMRQRMQQQLDEYQELLDiKLALDMEiSAYRKLLEGEEERLR 385
Cdd:pfam01576 990 RQAankLVRRTEKKLKEVLLQVEDERRHADQYKDQAE-KGNSRMK-QLKRQLEEAEEEASR 1048
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
59-392 |
6.54e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.82 E-value: 6.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 59 RITESETEISRELSGMKAAYEAELA-----DARKTL----DSVAKERARlqlELSKVREDYKELKARNGKKEaDLESALA 129
Cdd:pfam17380 300 RLRQEKEEKAREVERRRKLEEAEKArqaemDRQAAIyaeqERMAMERER---ELERIRQEERKRELERIRQE-EIAMEIS 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 130 RLKDLESLlnskdaslstalgekrtlEVEvRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENR-IQTLKEELEFQKNIY 208
Cdd:pfam17380 376 RMRELERL------------------QME-RQQKNERVRQELEAARKVKILEEERQRKIQQQKVeMEQIRAEQEEARQRE 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 209 SEELRESKRRYESRVVEIDSGRQQDYESkladaltdLRNQHEEQLRiYKEEIEKtynSKLENARSSAERNSHLvgaaHEE 288
Cdd:pfam17380 437 VRRLEEERAREMERVRLEEQERQQQVER--------LRQQEEERKR-KKLELEK---EKRDRKRAEEQRRKIL----EKE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 289 LQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEalSRERDILRRrledKEKEMAEmRQRMQQQLDEYQELLDIKLALDM 368
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKEMEERQKAIYEEER--RREAEEERR----KQQEMEE-RRRIQEQMRKATEERSRLEAMER 573
|
330 340
....*....|....*....|....
gi 528504246 369 EISAYRKLLEGEEERLRLSPSPPP 392
Cdd:pfam17380 574 EREMMRQIVESEKARAEYEATTPI 597
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
25-385 |
8.25e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 52.48 E-value: 8.25e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 25 RLQEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKaayeaELADARKTLDSvakERARLQLELS 104
Cdd:pfam01576 154 RKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQ-----ELEKAKRKLEG---ESTDLQEQIA 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 105 KVREDYKELKARNGKKEADLESALARLKDlesllnskdaslstALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEM 184
Cdd:pfam01576 226 ELQAQIAELRAQLAKKEEELQAALARLEE--------------ETAQKNNALKKIRELEAQISELQEDLESERAARNKAE 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 185 LRRVDAENRIQTLKEELE--FQKNIYSEELReSKRryESRVVEIDsgRQQDYESKLADA-LTDLRNQHEEQLRIYKEEIE 261
Cdd:pfam01576 292 KQRRDLGEELEALKTELEdtLDTTAAQQELR-SKR--EQEVTELK--KALEEETRSHEAqLQEMRQKHTQALEELTEQLE 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 262 KTYNSK--LENARSSAERNSHLVGAAHEELQQTRVRME----GVSSQLSQLQKQLAAREAKIRELEEALSR---ERDILR 332
Cdd:pfam01576 367 QAKRNKanLEKAKQALESENAELQAELRTLQQAKQDSEhkrkKLEGQLQELQARLSESERQRAELAEKLSKlqsELESVS 446
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 528504246 333 RRLEDKEKEMAEMRQRMQQ---QLDEYQELLDIKLALDMEISAYRKLLEGEEERLR 385
Cdd:pfam01576 447 SLLNEAEGKNIKLSKDVSSlesQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQ 502
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
152-394 |
1.14e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.94 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 152 KRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDemlrrvdAENRIQTLKEE-----LEFQKNIYSEELREskrrYESRVVEI 226
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEE-------AEAALEEFRQKnglvdLSEEAKLLLQQLSE----LESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 227 DSgRQQDYESKLADALTDLRNQHEEQLRIYKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRvrmegvsSQLSQL 306
Cdd:COG3206 232 RA-ELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALR-------AQIAAL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 307 QKQLAAReakIRELEEALSRERDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEE-RLR 385
Cdd:COG3206 304 RAQLQQE---AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEaRLA 380
|
....*....
gi 528504246 386 LSPSPPPAR 394
Cdd:COG3206 381 EALTVGNVR 389
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
74-349 |
1.44e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.76 E-value: 1.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 74 MKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGE-K 152
Cdd:pfam12128 598 SEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAErK 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 153 RTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLR-RVDAENRIQTLKEELEFQKNIYSEELresKRRYESRVVEIDsGRQ 231
Cdd:pfam12128 678 DSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREaRTEKQAYWQVVEGALDAQLALLKAAI---AARRSGAKAELK-ALE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 232 QDYESKLADALTDlrnqhEEQLRIYKEEIeKTYNSKLENArssaERNSHLVGAAHEELQQT--------RVRMEGVSSQL 303
Cdd:pfam12128 754 TWYKRDLASLGVD-----PDVIAKLKREI-RTLERKIERI----AVRRQEVLRYFDWYQETwlqrrprlATQLSNIERAI 823
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 528504246 304 SQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQRM 349
Cdd:pfam12128 824 SELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEM 869
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
238-387 |
1.64e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.17 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 238 LADALTDLRNQHEEQLRIYKEEIEKtYNSKLENARSSAE--RNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREA 315
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPE-LRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 316 KIRELEEALSRERDILRRRLEDkeKEMAEMRQRMQQQLDEYQELL--------DIKlALDMEISAYRKLLEGEEERLRLS 387
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQS--PVIQQLRAQLAELEAELAELSarytpnhpDVI-ALRAQIAALRAQLQQEAQRILAS 317
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
165-359 |
2.11e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.54 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 165 QLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEfQKNIYSEELRESKRRYESRVVEIDSgRQQDYESKLADALTd 244
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLE-AAKTELEDLEKEIKRLELEIEEVEA-RIKKYEEQLGNVRN- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 245 lrnqhEEQLRIYKEEIEKtynskLENARSSAErnshlvgaahEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEAL 324
Cdd:COG1579 88 -----NKEYEALQKEIES-----LKRRISDLE----------DEILELMERIEELEEELAELEAELAELEAELEEKKAEL 147
|
170 180 190
....*....|....*....|....*....|....*.
gi 528504246 325 SRERDILRRRLEDKEKEMAEMRQRMQQQL-DEYQEL 359
Cdd:COG1579 148 DEELAELEAELEELEAEREELAAKIPPELlALYERI 183
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
103-351 |
2.11e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 2.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 103 LSKVREDYKELKARngkkeadLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKqlqd 182
Cdd:PRK03918 167 LGEVIKEIKRRIER-------LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE---- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 183 emlrrvdaenriqtLKEELEfQKNIYSEELRESKRRYESRVVEIDSGRQQDYEskladaltdlrnqHEEQLRIYKEEIEK 262
Cdd:PRK03918 236 --------------LKEEIE-ELEKELESLEGSKRKLEEKIRELEERIEELKK-------------EIEELEEKVKELKE 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 263 TYNSKLENARSSAERNSHLvgaahEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRR--RLEDKEK 340
Cdd:PRK03918 288 LKEKAEEYIKLSEFYEEYL-----DELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRleELEERHE 362
|
250
....*....|.
gi 528504246 341 EMAEMRQRMQQ 351
Cdd:PRK03918 363 LYEEAKAKKEE 373
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
104-385 |
2.17e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 104 SKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDE 183
Cdd:TIGR04523 120 NKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 184 MLRRVDAENRIQTLKE------ELEFQKNIYSEELRESKRRYESRVVEIDSGRQQ-----DYESKLADALTDLRNQHEE- 251
Cdd:TIGR04523 200 ELLLSNLKKKIQKNKSlesqisELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQlnqlkDEQNKIKKQLSEKQKELEQn 279
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 252 -QLRIYKEEIEKTYNSKLENARSSAERNshLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSR---E 327
Cdd:TIGR04523 280 nKKIKELEKQLNQLKSEISDLNNQKEQD--WNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNsesE 357
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 528504246 328 RDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEERLR 385
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK 415
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
121-348 |
2.71e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.68 E-value: 2.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 121 EADLESALARLKDLESLLNSkdasLSTALGEKRTLEvEVRDLKAQLAKLEGSLNDAkkQLQDEMLRRVDAENRIQTLKEE 200
Cdd:COG4913 224 FEAADALVEHFDDLERAHEA----LEDAREQIELLE-PIRELAERYAAARERLAEL--EYLRAALRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 201 LEfqkniyseELRESKRRYESRVVEIDSGRQQdyeskLADALTDLRNQHEE----QLRIYKEEIEKTyNSKLENARSSAE 276
Cdd:COG4913 297 LE--------ELRAELARLEAELERLEARLDA-----LREELDELEAQIRGnggdRLEQLEREIERL-ERELEERERRRA 362
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528504246 277 RNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQR 348
Cdd:COG4913 363 RLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
28-387 |
2.80e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 2.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 28 EKEDLSnlnDRLAVYIDKVRSLEVENAGLRMRITESETEISR------ELSGMKAAYEAELADARKTLDSVAKERARLQL 101
Cdd:PRK02224 273 EREELA---EEVRDLRERLEELEEERDDLLAEAGLDDADAEAvearreELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 102 ELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDAslstalgEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQ 181
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE-------EIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 182 DEMLRRVDAENRIQTLKEELEfqkniYSEELRESKRRYE--------SRVVEIDSGRQQdyESKLADALTDLRNQHEE-Q 252
Cdd:PRK02224 423 ELREREAELEATLRTARERVE-----EAEALLEAGKCPEcgqpvegsPHVETIEEDRER--VEELEAELEDLEEEVEEvE 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 253 LRIYKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDilr 332
Cdd:PRK02224 496 ERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEARE--- 572
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 333 rRLEDKEKEMAEMRQRMqQQLDEYQELLDIKLALDMEISAYRKLLEG-----EEERLRLS 387
Cdd:PRK02224 573 -EVAELNSKLAELKERI-ESLERIRTLLAAIADAEDEIERLREKREAlaelnDERRERLA 630
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
96-324 |
2.89e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.54 E-value: 2.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 96 RARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEgslnd 175
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE----- 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 176 AKKQLQDEMLRRVDAENRIQTLKEELefqkniysEELRESKRRYESRVVEIDSGRQQdyeskladaLTDLRNQHEEQLRI 255
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERL--------EELEERLEELRELEEELEELEAE---------LAELQEELEELLEQ 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528504246 256 YKEEIEKTYNSKLENARSSAERnshlVGAAHEELQQTRVRMEGVSSQLSQLQKQLaAREAKIRELEEAL 324
Cdd:COG4717 186 LSLATEEELQDLAEELEELQQR----LAELEEELEEAQEELEELEEELEQLENEL-EAAALEERLKEAR 249
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
93-384 |
3.95e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 3.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 93 AKERARLQLELSKVRE-DYKELKARNgkkeaDLESALARLKDLESLLNSKDASLSTALGEKRTLEvEVRDLKAQLAKLEG 171
Cdd:TIGR02169 152 PVERRKIIDEIAGVAEfDRKKEKALE-----ELEEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREYEG 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 172 SLNDAKKQLQDEMLRRVDAEnrIQTLKEELEFQKniysEELRESKRRYESRVVEIDSgrqqdyESKLADALTDlrnqhEE 251
Cdd:TIGR02169 226 YELLKEKEALERQKEAIERQ--LASLEEELEKLT----EEISELEKRLEEIEQLLEE------LNKKIKDLGE-----EE 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 252 QLRIyKEEIEKTyNSKLENARSSAERNShlvgaaheelqqtrvrmegvssqlsQLQKQLAAREAKIRELEEALSRERDIL 331
Cdd:TIGR02169 289 QLRV-KEKIGEL-EAEIASLERSIAEKE-------------------------RELEDAEERLAKLEAEIDKLLAEIEEL 341
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 528504246 332 RRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEERL 384
Cdd:TIGR02169 342 EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKL 394
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
31-374 |
4.16e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 4.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 31 DLSNLNDRLAVYIDKVRSLEVENAGLRMRITES-ETEISRELSGMKAAYEA---ELADARKTLDSVAKE-RARLQLELSK 105
Cdd:pfam12128 355 ELENLEERLKALTGKHQDVTAKYNRRRSKIKEQnNRDIAGIKDKLAKIREArdrQLAVAEDDLQALESElREQLEAGKLE 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 106 VREDYKELKARNGKKEADLESALARLKDLESLLNSKDAsLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEML 185
Cdd:pfam12128 435 FNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDER-IERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASR 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 186 RRVDAENRIQTLKEELEFQKNIYSEELRESKRRYESRVVEIDSGRQ--------QDYESKLADALT------DLRN---- 247
Cdd:pfam12128 514 RLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQSIGKVISPELlhrtdldpEVWDGSVGGELNlygvklDLKRidvp 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 248 ---QHEEQLRIYKEEIEKTY-----------------NSKLENARSSAERNSHLVGAAHEELQQTRVRMEgvsSQLSQLQ 307
Cdd:pfam12128 594 ewaASEEELRERLDKAEEALqsarekqaaaeeqlvqaNGELEKASREETFARTALKNARLDLRRLFDEKQ---SEKDKKN 670
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528504246 308 KQLAAREAKIRELEEALSRERDILRRR----LEDKEKEMAEMRQRMQQQLDEYQELLDIKLA-LDMEISAYR 374
Cdd:pfam12128 671 KALAERKDSANERLNSLEAQLKQLDKKhqawLEEQKEQKREARTEKQAYWQVVEGALDAQLAlLKAAIAARR 742
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
68-346 |
4.89e-06 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 48.75 E-value: 4.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 68 SRELSGMKAAYEAELADARKTLDSVAKERARLQLELSKVRE-------DYKELKARNGKKEADLESALARLKDLESLLNS 140
Cdd:COG1340 3 TDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEkrdelnaQVKELREEAQELREKRDELNEKVKELKEERDE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 141 KDASLSTALGEKRTLevevRDLKAQLAKLEGSLNDAKKQLQDEmlrrvdaENRIQTLKEELEFQKNIYsEELRESKRRYE 220
Cdd:COG1340 83 LNEKLNELREELDEL----RKELAELNKAGGSIDKLRKEIERL-------EWRQQTEVLSPEEEKELV-EKIKELEKELE 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 221 SRVVEIDSGRQQDYESKLADALTDLRNQHEEQLRIYKEEIEKTYNsKLENARSSAERNSHLVGAAHEELQQTRVRMEGVS 300
Cdd:COG1340 151 KAKKALEKNEKLKELRAELKELRKEAEEIHKKIKELAEEAQELHE-EMIELYKEADELRKEADELHKEIVEAQEKADELH 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 528504246 301 SQLSQLQKqlaareaKIRELEEALSRERDILRRRLEDKEKEMAEMR 346
Cdd:COG1340 230 EEIIELQK-------ELRELRKELKKLRKKQRALKREKEKEELEEK 268
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
25-371 |
4.98e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 4.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 25 RLQEK-----EDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGmkaayeaeLADARKTLDSV------- 92
Cdd:COG3096 344 RQQEKieryqEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQ--------LADYQQALDVQqtraiqy 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 93 -----AKERARLQLELSKVREDykELKARNGKKEADLESALARLKDLESLLNSKDA-------------------SLSTA 148
Cdd:COG3096 416 qqavqALEKARALCGLPDLTPE--NAEDYLAAFRAKEQQATEEVLELEQKLSVADAarrqfekayelvckiagevERSQA 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 149 LGEKRTLEVEVRDLKAQLAKLEGslndAKKQLQdEMLRRVDAENRIQTLKEELefqkniyseelreskrryesrvveids 228
Cdd:COG3096 494 WQTARELLRRYRSQQALAQRLQQ----LRAQLA-ELEQRLRQQQNAERLLEEF--------------------------- 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 229 GRQQDYESKLADALTDLRNQHEEQLriykEEIEktynsklENARSSAERNShlvgaaheELQQTRVrmegvssQLSQLQK 308
Cdd:COG3096 542 CQRIGQQLDAAEELEELLAELEAQL----EELE-------EQAAEAVEQRS--------ELRQQLE-------QLRARIK 595
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 309 QLAAREAKIRELEEALSRERDILRRRLEDKekemAEMRQRMQQQLD-------EYQELLDIKLALDMEIS 371
Cdd:COG3096 596 ELAARAPAWLAAQDALERLREQSGEALADS----QEVTAAMQQLLErereatvERDELAARKQALESQIE 661
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
167-349 |
6.67e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 49.01 E-value: 6.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 167 AKLEGSLNDAKKQLQDemlrrvdAENRIQTLKEELEFQ-KNIYSEELRESKRRYESRVVEIdsgrqQDYESKLadaltdl 245
Cdd:PRK12704 31 AKIKEAEEEAKRILEE-------AKKEAEAIKKEALLEaKEEIHKLRNEFEKELRERRNEL-----QKLEKRL------- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 246 rNQHEEQLRIYKEEIEKTyNSKLENARSSAERNSHLVGAAHEELQQTrvrmegVSSQLSQLQK--QLAAREAK---IREL 320
Cdd:PRK12704 92 -LQKEENLDRKLELLEKR-EEELEKKEKELEQKQQELEKKEEELEEL------IEEQLQELERisGLTAEEAKeilLEKV 163
|
170 180
....*....|....*....|....*....
gi 528504246 321 EEALSRERDILRRRLEDKEKEMAEMRQRM 349
Cdd:PRK12704 164 EEEARHEAAVLIKEIEEEAKEEADKKAKE 192
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
28-385 |
7.33e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 7.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 28 EKEDLSNLNDRLAVYIDKVRSLEVENAGLRM------RITESETEISRELSGMKAAYEAELADARktldsvakerarLQL 101
Cdd:pfam05483 392 ELEEMTKFKNNKEVELEELKKILAEDEKLLDekkqfeKIAEELKGKEQELIFLLQAREKEIHDLE------------IQL 459
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 102 ELSKVREDYKELKARNGKKEADLEsalaRLKDLESLLNSKDASLstalgEKRTLEVEVRDLKAQLAKLEGSLNDAKKQlQ 181
Cdd:pfam05483 460 TAIKTSEEHYLKEVEDLKTELEKE----KLKNIELTAHCDKLLL-----ENKELTQEASDMTLELKKHQEDIINCKKQ-E 529
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 182 DEMLRRVDA-ENRIQTLKEELEFQKNIYSEELRESKRRYE-----SRVVEIDSGRQQDYESKLADALTDLRNQHEEQLRI 255
Cdd:pfam05483 530 ERMLKQIENlEEKEMNLRDELESVREEFIQKGDEVKCKLDkseenARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKN 609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 256 YKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRVRM---EGVSSQLSQLQKQLAAREAKIRELE-------EALS 325
Cdd:pfam05483 610 IEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQkfeEIIDNYQKEIEDKKISEEKLLEEVEkakaiadEAVK 689
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528504246 326 RERDIlRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLAL----DMEISAYRKLLEGEEERLR 385
Cdd:pfam05483 690 LQKEI-DKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLyknkEQEQSSAKAALEIELSNIK 752
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
69-358 |
8.45e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.18 E-value: 8.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 69 RELSGMKAAYEAELADARKTLdsvAKERARLQlelsKVREDYKELKARNGKKEADLESALARLK---------------- 132
Cdd:COG3096 281 RELSERALELRRELFGARRQL---AEEQYRLV----EMARELEELSARESDLEQDYQAASDHLNlvqtalrqqekieryq 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 133 -DLESL----------LNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLndakkqlqDEMLRR-------VDAENRI 194
Cdd:COG3096 354 eDLEELterleeqeevVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL--------DVQQTRaiqyqqaVQALEKA 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 195 QTLKEELEFQKNIYSEELRESKRRYEsrvvEIDSGRqQDYESKLADAlTDLRNQHEEQLRIYK--------EEIEKTYNS 266
Cdd:COG3096 426 RALCGLPDLTPENAEDYLAAFRAKEQ----QATEEV-LELEQKLSVA-DAARRQFEKAYELVCkiageverSQAWQTARE 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 267 KLENARSS---AERNSHLvGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSrERDILRRRLEDKEKEMA 343
Cdd:COG3096 500 LLRRYRSQqalAQRLQQL-RAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLA-ELEAQLEELEEQAAEAV 577
|
330
....*....|....*
gi 528504246 344 EMRQRMQQQLDEYQE 358
Cdd:COG3096 578 EQRSELRQQLEQLRA 592
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
25-363 |
8.63e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 8.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 25 RLQEKEDLSNLNDRLavyidkvRSLEVENAGLRMRITESETEIsrELSGMKAAYEAELADAR-KTLDSVAKERARLQLEL 103
Cdd:pfam15921 529 KLQELQHLKNEGDHL-------RNVQTECEALKLQMAEKDKVI--EILRQQIENMTQLVGQHgRTAGAMQVEKAQLEKEI 599
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 104 SKVREDYKELKARNGKKEADLESALARLKDLE----SLLNSKDASLSTalgekrtleveVRDLKAQLAKLEGSLNDAKKQ 179
Cdd:pfam15921 600 NDRRLELQEFKILKDKKDAKIRELEARVSDLElekvKLVNAGSERLRA-----------VKDIKQERDQLLNEVKTSRNE 668
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 180 LQD-----EMLRRvdaenRIQTLKEELEFQKNIYSEELRESKRRYESRVVEIDSGRQQD-YESKLADALTDLRNQHEEQL 253
Cdd:pfam15921 669 LNSlsedyEVLKR-----NFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDgHAMKVAMGMQKQITAKRGQI 743
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 254 RIYKEEIEktynsKLENARSSAERNSHLVGAAHEELQQtrvRMEGVSSQLSQLQKQLAAREAKIRELEEALSRerdiLRR 333
Cdd:pfam15921 744 DALQSKIQ-----FLEEAMTNANKEKHFLKEEKNKLSQ---ELSTVATEKNKMAGELEVLRSQERRLKEKVAN----MEV 811
|
330 340 350
....*....|....*....|....*....|....*
gi 528504246 334 RLEDKEKEMAEMRQRMQQQLDE-----YQELLDIK 363
Cdd:pfam15921 812 ALDKASLQFAECQDIIQRQEQEsvrlkLQHTLDVK 846
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
293-385 |
8.66e-06 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 48.92 E-value: 8.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 293 RVRMEGVS--SQLSQLQKQLAA----REAKIRELEEALSRERDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLAL 366
Cdd:COG0542 401 RVRMEIDSkpEELDELERRLEQleieKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEEL 480
|
90 100
....*....|....*....|..
gi 528504246 367 D---MEISAYRKLLEGEEERLR 385
Cdd:COG0542 481 EqryGKIPELEKELAELEEELA 502
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
37-361 |
1.00e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.07 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 37 DRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKelkar 116
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVA----- 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 117 ngKKEADLESALARLKDLEsllnskDASLSTALGEKRTL---EVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENR 193
Cdd:pfam12128 319 --KDRSELEALEDQHGAFL------DADIETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNR 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 194 -IQTLKEELEFQkniyseelreskrrYESRVveidsgRQQDYESKLADAL-TDLRNQHEEQLRIYKEEiEKTYNSKLENA 271
Cdd:pfam12128 391 dIAGIKDKLAKI--------------REARD------RQLAVAEDDLQALeSELREQLEAGKLEFNEE-EYRLKSRLGEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 272 RSSAERnshlVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAkireleeaLSRERDILRRRLEDKEKEMAEMRQRMQQ 351
Cdd:pfam12128 450 KLRLNQ----ATATPELLLQLENFDERIERAREEQEAANAEVER--------LQSELRQARKRRDQASEALRQASRRLEE 517
|
330
....*....|...
gi 528504246 352 Q---LDEYQELLD 361
Cdd:pfam12128 518 RqsaLDELELQLF 530
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
76-386 |
1.02e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.61 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 76 AAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKarngkKEADLESALARLKDLESLLNSKDA---SLSTALGEK 152
Cdd:COG4717 84 EEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-----KLLQLLPLYQELEALEAELAELPErleELEERLEEL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 153 RTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRV-DAENRIQTLKEELEFQKniysEELRESKRRYESRVVEIDSGRQ 231
Cdd:COG4717 159 RELEEELEELEAELAELQEELEELLEQLSLATEEELqDLAEELEELQQRLAELE----EELEEAQEELEELEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 232 QDYESKLADALTDLR---------------NQHEEQLRIYKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRVRM 296
Cdd:COG4717 235 ELEAAALEERLKEARlllliaaallallglGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALE 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 297 EGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQrmQQQLDEYQELLDIKLALDMEisAYRKL 376
Cdd:COG4717 315 ELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL--EELEQEIAALLAEAGVEDEE--ELRAA 390
|
330
....*....|
gi 528504246 377 LEGEEERLRL 386
Cdd:COG4717 391 LEQAEEYQEL 400
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
81-263 |
1.21e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 81 ELADARKTLDSVAKERARLQLELSKVREDYKELKARngkkeadLESALARLKDLESllnskdaslstalgEKRTLEVEVR 160
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEAR-------LEAAKTELEDLEK--------------EIKRLELEIE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 161 DLKAQLAKLEGSLNDAKKQ-----LQDEM----LRRVDAENRIQTLKEELEFQKniysEELRESKRRYESRVVEIDsgrq 231
Cdd:COG1579 70 EVEARIKKYEEQLGNVRNNkeyeaLQKEIeslkRRISDLEDEILELMERIEELE----EELAELEAELAELEAELE---- 141
|
170 180 190
....*....|....*....|....*....|..
gi 528504246 232 qDYESKLADALTDLRNQhEEQLRIYKEEIEKT 263
Cdd:COG1579 142 -EKKAELDEELAELEAE-LEELEAEREELAAK 171
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
44-347 |
1.70e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.89 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 44 DKVRSLEVENAGLRMRITESETEISRELSGMKAAYEAeLADARKTLDSVAKERAR----LQLELSKVREDYKELKARNGK 119
Cdd:pfam10174 408 EQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEA-LSEKERIIERLKEQRERedreRLEELESLKKENKDLKEKVSA 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 120 KEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLndaKKQLQDEMLRRVDAE--NRIQTL 197
Cdd:pfam10174 487 LQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQL---KKAHNAEEAVRTNPEinDRIRLL 563
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 198 KEELEFQKNIYSEELRESKRRYES-RVVEIDsgrQQDYESKLADALTDLRNQHEEQ------LRIYKEEIEKTYNSKLEN 270
Cdd:pfam10174 564 EQEVARYKEESGKAQAEVERLLGIlREVENE---KNDKDKKIAELESLTLRQMKEQnkkvanIKHGQQEMKKKGAQLLEE 640
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528504246 271 ARSsaERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEdkekEMAEMRQ 347
Cdd:pfam10174 641 ARR--REDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLE----EILEMKQ 711
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
201-385 |
2.87e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 201 LEFQKNIYSEELRESKRRYES---RVVEIDSGRQQDYESKLADALTDLR--NQHEEQLRIYKEEIEKTYNsKLENARSSA 275
Cdd:COG4717 40 LAFIRAMLLERLEKEADELFKpqgRKPELNLKELKELEEELKEAEEKEEeyAELQEELEELEEELEELEA-ELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 276 ERNSHLVGA--AHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEaLSRERDILRRRLEDKEKEM-AEMRQRMQQQ 352
Cdd:COG4717 119 EKLEKLLQLlpLYQELEALEAELAELPERLEELEERLEELRELEEELEE-LEAELAELQEELEELLEQLsLATEEELQDL 197
|
170 180 190
....*....|....*....|....*....|...
gi 528504246 353 LDEYQELLDIKLALDMEISAYRKLLEGEEERLR 385
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
37-278 |
2.96e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 37 DRLAVYIDKVRSLEVENAGLRMRITESETEIsRELSGMKAAYEA---------ELADARKTLDSVAKERAR--------- 98
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLEALEAEL-DALQERREALQRlaeyswdeiDVASAEREIAELEAELERldassddla 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 99 -LQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAK 177
Cdd:COG4913 689 aLEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR 768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 178 KQLQDemlRRVDAENRIQTLKEELEfqkniysEELRESKRRYESRVVEIDSG--RQQDYESKLADALTDLRNQHEEQLRI 255
Cdd:COG4913 769 ENLEE---RIDALRARLNRAEEELE-------RAMRAFNREWPAETADLDADleSLPEYLALLDRLEEDGLPEYEERFKE 838
|
250 260
....*....|....*....|....*..
gi 528504246 256 YKEEIEKT----YNSKLENARSSAERN 278
Cdd:COG4913 839 LLNENSIEfvadLLSKLRRAIREIKER 865
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
79-384 |
2.97e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.48 E-value: 2.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 79 EAELADARKTLDSVAKERARLQLELSKVREDY---KELKARngkkeadlesALARLKDLESLLNSKDASL-------STA 148
Cdd:pfam01576 25 ESELKELEKKHQQLCEEKNALQEQLQAETELCaeaEEMRAR----------LAARKQELEEILHELESRLeeeeersQQL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 149 LGEKRTLEVEVRDLKAQLAKLEGslndAKKQLQdemLRRVDAENRIQTLKEE---LEFQKNIYSEElresKRRYESRVVE 225
Cdd:pfam01576 95 QNEKKKMQQHIQDLEEQLDEEEA----ARQKLQ---LEKVTTEAKIKKLEEDillLEDQNSKLSKE----RKLLEERISE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 226 IDSgrQQDYESKLADALTDLRNQHEE-----QLRIYKEE-----IEK----------TYNSKLENARSSAERNSHLVGAA 285
Cdd:pfam01576 164 FTS--NLAEEEEKAKSLSKLKNKHEAmisdlEERLKKEEkgrqeLEKakrklegestDLQEQIAELQAQIAELRAQLAKK 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 286 HEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRER-----------------DILRRRLEDK---------- 338
Cdd:pfam01576 242 EEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERaarnkaekqrrdlgeelEALKTELEDTldttaaqqel 321
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528504246 339 ----------------------EKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEERL 384
Cdd:pfam01576 322 rskreqevtelkkaleeetrshEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAEL 389
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
62-384 |
3.27e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 3.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 62 ESETEISRELSGMKAAYEAELADARKTLDsvakeraRLQLELSKVREDYKELKARNGKkeadLESALARLKDLESLLNSK 141
Cdd:PRK04863 365 EEQNEVVEEADEQQEENEARAEAAEEEVD-------ELKSQLADYQQALDVQQTRAIQ----YQQAVQALERAKQLCGLP 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 142 DASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAkkqlqDEMLRRVD-AENRIQTLKEELEfqKNIYSEELRESKRRYE 220
Cdd:PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVA-----QAAHSQFEqAYQLVRKIAGEVS--RSEAWDVARELLRRLR 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 221 SRVVEidSGRQQDYESKLADALTDLRNQH--EEQLRIYKEEIEKTYNSK--LENARSSAERNSHLVGAAHEELQQTRVRM 296
Cdd:PRK04863 507 EQRHL--AEQLQQLRMRLSELEQRLRQQQraERLLAEFCKRLGKNLDDEdeLEQLQEELEARLESLSESVSEARERRMAL 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 297 EGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMrQRMQQQLDEYQELLDiklaldmEISAYRKL 376
Cdd:PRK04863 585 RQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYM-QQLLERERELTVERD-------ELAARKQA 656
|
....*...
gi 528504246 377 LEGEEERL 384
Cdd:PRK04863 657 LDEEIERL 664
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
130-359 |
4.30e-05 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 45.96 E-value: 4.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 130 RLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSlndakkqlqDEMLRRVDAENRIQTlkeelefQKNIYS 209
Cdd:pfam15905 95 RLQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRV---------NELLKAKFSEDGTQK-------KMSSLS 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 210 EELRESKRRYESRVVEIdSGRQQDYESKLADALTDLRN------QHEEQLR-IYKEEIEK--------TYNSKLENARSS 274
Cdd:pfam15905 159 MELMKLRNKLEAKMKEV-MAKQEGMEGKLQVTQKNLEHskgkvaQLEEKLVsTEKEKIEEksetekllEYITELSCVSEQ 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 275 AERNSHLVGAAHEELQQTRVRMEGVSSQLSQ----LQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQRMQ 350
Cdd:pfam15905 238 VEKYKLDIAQLEELLKEKNDEIESLKQSLEEkeqeLSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLT 317
|
....*....
gi 528504246 351 QQLDEYQEL 359
Cdd:pfam15905 318 LEEQEHQKL 326
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
109-202 |
4.69e-05 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 46.26 E-value: 4.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 109 DYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKL-EGSLNDAKKQLQDemlrr 187
Cdd:TIGR04320 255 SLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALQTaQNNLATAQAALAN----- 329
|
90
....*....|....*
gi 528504246 188 vdAENRIQTLKEELE 202
Cdd:TIGR04320 330 --AEARLAKAKEALA 342
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
22-385 |
5.16e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 5.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 22 RISRLQEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAY--EAELADARKTLDSV--AKERA 97
Cdd:TIGR00618 278 VLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVkqQSSIEEQRRLLQTLhsQEIHI 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 98 RLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLndaK 177
Cdd:TIGR00618 358 RDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQ---E 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 178 KQLQDEMLRRVDAENRIQTLKeelefQKNIyseELRESKRRYESRVveidsgrQQdyeskladaLTDLRNQHEEQLRIYK 257
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEK-----LEKI---HLQESAQSLKERE-------QQ---------LQTKEQIHLQETRKKA 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 258 EEiEKTYNSKLENARSSAERNSHLVGAAHE--ELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILrRRL 335
Cdd:TIGR00618 491 VV-LARLLELQEEPCPLCGSCIHPNPARQDidNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM-QEI 568
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 528504246 336 EDKEKEMAEMRQRMQQQLDEYQELLD-IKLALDMEISAYRKLLEGEEERLR 385
Cdd:TIGR00618 569 QQSFSILTQCDNRSKEDIPNLQNITVrLQDLTEKLSEAEDMLACEQHALLR 619
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
70-345 |
8.64e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 45.45 E-value: 8.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 70 ELSGMKAAYEA------ELADARKTLDSVAKERARLQLELskvredyKELKARNGKK--EADLESALARLKDLESLLNSk 141
Cdd:COG0497 156 LLEEYREAYRAwralkkELEELRADEAERARELDLLRFQL-------EELEAAALQPgeEEELEEERRRLSNAEKLREA- 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 142 dasLSTALgekrtlevevrdlkAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEfqkNIYSE--ELRESKRRY 219
Cdd:COG0497 228 ---LQEAL--------------EALSGGEGGALDLLGQALRALERLAEYDPSLAELAERLE---SALIEleEAASELRRY 287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 220 ESRVvEIDSGRQQDYESKLaDALTDLrnqheeqLRIYKEEIEKtynsklenarssaernshlVGAAHEELQQTRVRMEGV 299
Cdd:COG0497 288 LDSL-EFDPERLEEVEERL-ALLRRL-------ARKYGVTVEE-------------------LLAYAEELRAELAELENS 339
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 528504246 300 SSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDK-EKEMAEM 345
Cdd:COG0497 340 DERLEELEAELAEAEAELLEAAEKLSAARKKAAKKLEKAvTAELADL 386
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
75-363 |
8.99e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 8.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 75 KAAYEAELADARKTldsvAKERARLQLELSKVREDYKelKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRT 154
Cdd:PTZ00121 1438 KKAEEAKKADEAKK----KAEEAKKAEEAKKKAEEAK--KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 155 LEvEVRdlKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKniySEELR--ESKRRYESR---------- 222
Cdd:PTZ00121 1512 AD-EAK--KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKK---AEEKKkaEEAKKAEEDknmalrkaee 1585
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 223 VVEIDSGRQQD----YESKLADALTDLRNQHEEQLR---IYKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRVR 295
Cdd:PTZ00121 1586 AKKAEEARIEEvmklYEEEKKMKAEEAKKAEEAKIKaeeLKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE 1665
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 528504246 296 MEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQrmQQQLDEYQELLDIK 363
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK--AEELKKAEEENKIK 1731
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
75-241 |
1.44e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 75 KAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLES------------------ 136
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAeieerreelgeraralyr 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 137 ----------LLNSKDAS--------LSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLK 198
Cdd:COG3883 98 sggsvsyldvLLGSESFSdfldrlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQ 177
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 528504246 199 EELEFQKNIYSEELRESKRRYESRVVEIDSGRQQDYESKLADA 241
Cdd:COG3883 178 AEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAA 220
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
111-378 |
1.51e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.04 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 111 KELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDA 190
Cdd:TIGR00606 691 AELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQ 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 191 ENRIQTLKEELEFQKNI---------YSEELRESKRRYESRVVEIDSgrqqdyeSKLADALTDLRNQHEEQlriyKEEIE 261
Cdd:TIGR00606 771 ETLLGTIMPEEESAKVCltdvtimerFQMELKDVERKIAQQAAKLQG-------SDLDRTVQQVNQEKQEK----QHELD 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 262 KTYNSKLENARSSAERNSHL--VGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKE 339
Cdd:TIGR00606 840 TVVSKIELNRKLIQDQQEQIqhLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLE 919
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 528504246 340 KEMAEMRQRMQQQLDEYQ----ELLDIKLALDmEISAYRKLLE 378
Cdd:TIGR00606 920 KDQQEKEELISSKETSNKkaqdKVNDIKEKVK-NIHGYMKDIE 961
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
25-361 |
1.57e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.89 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 25 RLQEKEDLSNLNDRLAVYIDKVRsLEVENAGLRMRITESETEISR---ELSGMKAAYEaELADARKTL----DSVAKERA 97
Cdd:pfam07888 48 QAQEAANRQREKEKERYKRDREQ-WERQRRELESRVAELKEELRQsreKHEELEEKYK-ELSASSEELseekDALLAQRA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 98 RLQLELSKVREDYKELKARNGKKEADLE-------SALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLE 170
Cdd:pfam07888 126 AHEARIRELEEDIKTLTQRVLERETELErmkerakKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRD 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 171 GSLndakKQLQDEMLRRVDAENRIQTLKEELEFQKniysEELRESKRRYES--RVVEIDSGRQQDYESKLADALTDLRNQ 248
Cdd:pfam07888 206 TQV----LQLQDTITTLTQKLTTAHRKEAENEALL----EELRSLQERLNAseRKVEGLGEELSSMAAQRDRTQAELHQA 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 249 HEEQLRIYKEEIEKTYNSKLENARSSAERNSHLVGAaheelQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRER 328
Cdd:pfam07888 278 RLQAAQLTLQLADASLALREGRARWAQERETLQQSA-----EADKDRIEKLSAELQRLEERLQEERMEREKLEVELGREK 352
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 528504246 329 DILRRRLEDKEKEMAEMRQRMQ-------QQLDEYQELLD 361
Cdd:pfam07888 353 DCNRVQLSESRRELQELKASLRvaqkekeQLQAEKQELLE 392
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
21-261 |
1.63e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 21 TRISRLQEK-EDLSNLNDRLAVYIDKVRSLE-VENAGLRMRITESETEISRELSGMKAAYEAE--LADARKTLDSVAKER 96
Cdd:COG4913 225 EAADALVEHfDDLERAHEALEDAREQIELLEpIRELAERYAAARERLAELEYLRAALRLWFAQrrLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 97 ARLQLELSKVREDYKELKAR-NGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLND 175
Cdd:COG4913 305 ARLEAELERLEARLDALREElDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAA 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 176 AKKQLQDEMLRRVDAENRIQTLKEELEfqkniysEELRESKRRYESRVVEIDS--GRQQDYESKLADALTDLRNQ---HE 250
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAE-------AALRDLRRELRELEAEIASleRRKSNIPARLLALRDALAEAlglDE 457
|
250
....*....|.
gi 528504246 251 EQLRIYKEEIE 261
Cdd:COG4913 458 AELPFVGELIE 468
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
79-370 |
1.75e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.51 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 79 EAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVE 158
Cdd:COG4372 44 QEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 159 VRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRESKRRYESRVVEIDSGRQQdyesKL 238
Cdd:COG4372 124 RQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAE----KE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 239 ADALTDLRNQHEEQLRIYKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIR 318
Cdd:COG4372 200 EELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELE 279
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 528504246 319 ELEEALSRERDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEI 370
Cdd:COG4372 280 IAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
109-358 |
3.21e-04 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 43.98 E-value: 3.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 109 DYKELKARNGKKEADLESAL-ARLKDLESLLNSKDASLSTALGEKRtlevevRDLKAQLAKLEGSLNDAKKQLQDEM-LR 186
Cdd:pfam09731 111 DAAEAKAQLPKSEQEKEKALeEVLKEAISKAESATAVAKEAKDDAI------QAVKAHTDSLKEASDTAEISREKATdSA 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 187 RVDAENRIQTLKEELEFQKNIYSEELRE----SKRRYESRVVEIDSGRQQDYESK-LADALTDLRNQHEEQLRIYKEEIE 261
Cdd:pfam09731 185 LQKAEALAEKLKEVINLAKQSEEEAAPPlldaAPETPPKLPEHLDNVEEKVEKAQsLAKLVDQYKELVASERIVFQQELV 264
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 262 KTYN-----SKLENARSSAERNShLVGAAHEELQQTRVRMEGVSSQLSQ-LQKQLAAREAKIRELEEALSRE----RDIL 331
Cdd:pfam09731 265 SIFPdiipvLKEDNLLSNDDLNS-LIAHAHREIDQLSKKLAELKKREEKhIERALEKQKEELDKLAEELSARleevRAAD 343
|
250 260
....*....|....*....|....*...
gi 528504246 332 RRRLEDK-EKEMAEMRQRMQQQLDEYQE 358
Cdd:pfam09731 344 EAQLRLEfEREREEIRESYEEKLRTELE 371
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
282-372 |
3.43e-04 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 43.30 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 282 VGAAHEELQQTRVRM----------------EGVSSQLSQLQKQLAAREAKIRELEEAL---SRERDILRRRLEDKEKEM 342
Cdd:COG3524 186 VERAEERLRDAREALlafrnrngildpeataEALLQLIATLEGQLAELEAELAALRSYLspnSPQVRQLRRRIAALEKQI 265
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 528504246 343 AEMRQRM---------QQQLDEYQEL-LDIKLALDMEISA 372
Cdd:COG3524 266 AAERARLtgasggdslASLLAEYERLeLEREFAEKAYTSA 305
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
24-359 |
3.45e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 24 SRLQEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAyEAELADARKTLDSVAKERARLQLEL 103
Cdd:COG1196 380 ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL-EEEEEEEEEALEEAAEEEAELEEEE 458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 104 SKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDA----------------------SLSTALGEKRTLEVEVRD 161
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEaeadyegflegvkaalllaglrGLAGAVAVLIGVEAAYEA 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 162 ---------------------------LKAQ---------LAKLEGSLNDAKKQLQDEMLRRVDA------------ENR 193
Cdd:COG1196 539 aleaalaaalqnivveddevaaaaieyLKAAkagratflpLDKIRARAALAAALARGAIGAAVDLvasdlreadaryYVL 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 194 IQTLKEELEFQKNIYSEELRESKRRYESRVVEIDSGRQQDYESKLADALTDLRNQ--HEEQLRIYKEEIEKTYNSKLENA 271
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAAllEAEAELEELAERLAEEELELEEA 698
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 272 RSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQRMQQ 351
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
410
....*....|....*
gi 528504246 352 -------QLDEYQEL 359
Cdd:COG1196 779 lgpvnllAIEEYEEL 793
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
164-378 |
3.69e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 43.48 E-value: 3.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 164 AQLAKLEGSLNDAKKQLQ---DEMLRRVDAENRIQTLkEELEFQKniySEELRESKRRYESRVVEIDSgrqqdYESKLAD 240
Cdd:pfam05667 290 TDTGLTKGSRFTHTEKLQftnEAPAATSSPPTKVETE-EELQQQR---EEELEELQEQLEDLESSIQE-----LEKEIKK 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 241 aLTDLRNQHEEQLRIYKEEiektyNSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQL-AARE---AK 316
Cdd:pfam05667 361 -LESSIKQVEEELEELKEQ-----NEELEKQYKVKKKTLDLLPDAEENIAKLQALVDASAQRLVELAGQWeKHRVpliEE 434
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528504246 317 IRELEEALSRERDILRRRLEdkekEMAEMRQRMQQQLDE-------YQELLDI--KLALDMEISAY-RKLLE 378
Cdd:pfam05667 435 YRALKEAKSNKEDESQRKLE----EIKELREKIKEVAEEakqkeelYKQLVAEyeRLPKDVSRSAYtRRILE 502
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
131-339 |
3.84e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 42.82 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 131 LKDLESLLNS-KDASLSTALGEKRTLEVEVRDL-------KAQLAKLEGSLNDAKKQLQDemlrrvdAENRIQTLKEELE 202
Cdd:pfam09787 20 LQSKEKLIASlKEGSGVEGLDSSTALTLELEELrqerdllREEIQKLRGQIQQLRTELQE-------LEAQQQEEAESSR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 203 FQKNIYSEELRESKRRYESRVVEIDsgRQQDYESKLADALTDLRNQHEEQLRIYKEEIEKTYN---SKLENARSSAERNS 279
Cdd:pfam09787 93 EQLQELEEQLATERSARREAEAELE--RLQEELRYLEEELRRSKATLQSRIKDREAEIEKLRNqltSKSQSSSSQSELEN 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 280 HLvGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSRERDILRRRLEDKE 339
Cdd:pfam09787 171 RL-HQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTSINMEGISDGE 229
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
75-365 |
4.40e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 75 KAAYEAELADARKTLDSVAKERARLQLELSKVREDYK------ELKARNGKKEAD-LESALARLKDLESLLNSKDASLST 147
Cdd:PTZ00121 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkadeaKKKAEEDKKKADeLKKAAAAKKKADEAKKKAEEKKKA 1433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 148 ALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQ-----DEMLRRVDAENRIQTLKEELEFQKNiYSEELR----ESKRR 218
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEeakkaDEAKKKAEEAKKADEAKKKAEEAKK-KADEAKkaaeAKKKA 1512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 219 YESRVVE----IDSGRQQDYESKLADALTDLRNQHEEQLRIYKEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRV 294
Cdd:PTZ00121 1513 DEAKKAEeakkADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 528504246 295 RMEGVsSQLSQLQKQLAAREAKIRELE----EALSRERDILRRRLEDKEKEMAEMRQrmQQQLDEYQELLDIKLA 365
Cdd:PTZ00121 1593 RIEEV-MKLYEEEKKMKAEEAKKAEEAkikaEELKKAEEEKKKVEQLKKKEAEEKKK--AEELKKAEEENKIKAA 1664
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
142-328 |
5.46e-04 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 43.13 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 142 DASLSTALGE--KRTLEVEVRDLKAQLAKLEGSLNDAKKQLQD----EMLRRVDAENriqtlKEELEFQKNIYSEELRES 215
Cdd:pfam13166 266 PAERKAALEAhfDDEFTEFQNRLQKLIEKVESAISSLLAQLPAvsdlASLLSAFELD-----VEDIESEAEVLNSQLDGL 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 216 KRRYESRVVEIDSGRQQDYESKLADALTDLRNQHEEQLRIYKEEIEKtYNSKLENARSSAERnsHLVGAAHEELQQTRVR 295
Cdd:pfam13166 341 RRALEAKRKDPFKSIELDSVDAKIESINDLVASINELIAKHNEITDN-FEEEKNKAKKKLRL--HLVEEFKSEIDEYKDK 417
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 528504246 296 MEGVSSQLSQLQKQL-------AAREAKIRELEEALSRER 328
Cdd:pfam13166 418 YAGLEKAINSLEKEIknleaeiKKLREEIKELEAQLRDHK 457
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
86-327 |
6.00e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 42.75 E-value: 6.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 86 RKTLDSVAKERARLQlelsKVREDYKELKARNgKKEADLESALARLKDLESLLNS-----KDASLSTalGEKRTLEVEVR 160
Cdd:COG0497 144 RELLDAFAGLEELLE----EYREAYRAWRALK-KELEELRADEAERARELDLLRFqleelEAAALQP--GEEEELEEERR 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 161 ------DLKAQLAKL-------EGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEfqkNIYSE--ELRESKRRYESRvVE 225
Cdd:COG0497 217 rlsnaeKLREALQEAlealsggEGGALDLLGQALRALERLAEYDPSLAELAERLE---SALIEleEAASELRRYLDS-LE 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 226 IDSGRQQDYESKLaDALTDLRNQH---EEQLRIYKEEIEKtynsKLENARSSAERnshlVGAAHEELQQTRVRMEGVSSQ 302
Cdd:COG0497 293 FDPERLEEVEERL-ALLRRLARKYgvtVEELLAYAEELRA----ELAELENSDER----LEELEAELAEAEAELLEAAEK 363
|
250 260
....*....|....*....|....*
gi 528504246 303 LSQlqkqlaAREAKIRELEEALSRE 327
Cdd:COG0497 364 LSA------ARKKAAKKLEKAVTAE 382
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
43-261 |
7.45e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.61 E-value: 7.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 43 IDKVRSLEVENAGlrmRITESETEISRELSGMKAAYEAE--LADARKTLDSVAKE--RARLQLELSKVREDYKELKARNG 118
Cdd:PRK05771 34 EDLKEELSNERLR---KLRSLLTKLSEALDKLRSYLPKLnpLREEKKKVSVKSLEelIKDVEEELEKIEKEIKELEEEIS 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 119 KKEADLESALARLKDLESLLNSkDASLSTALGEKR------TLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAEN 192
Cdd:PRK05771 111 ELENEIKELEQEIERLEPWGNF-DLDLSLLLGFKYvsvfvgTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKEL 189
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528504246 193 RIQTLKE--ELEFQKNIYSEE--LRESKRRYESRVVEIDSgrqqdYESKLADALTDLRNQHEEQLRIYKEEIE 261
Cdd:PRK05771 190 SDEVEEElkKLGFERLELEEEgtPSELIREIKEELEEIEK-----ERESLLEELKELAKKYLEELLALYEYLE 257
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
284-360 |
7.72e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 7.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 284 AAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEAL-----------------SRERDILRRRLEDKEKEMAEMR 346
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLaalerriaalarriralEQELAALEAELAELEKEIAELR 96
|
90
....*....|....
gi 528504246 347 QRMQQQLDEYQELL 360
Cdd:COG4942 97 AELEAQKEELAELL 110
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
84-320 |
9.60e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 42.15 E-value: 9.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 84 DARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLK---------DLESLLNSKDASLSTALGEKRT 154
Cdd:pfam06160 176 EAREVLEKLEEETDALEELMEDIPPLYEELKTELPDQLEELKEGYREMEeegyalehlNVDKEIQQLEEQLEENLALLEN 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 155 LEVE-----VRDLKAQLAKLEGSLN---DAKKQLQD------EMLRRVDAENRiQTLKE-------------ELEFQKNi 207
Cdd:pfam06160 256 LELDeaeeaLEEIEERIDQLYDLLEkevDAKKYVEKnlpeieDYLEHAEEQNK-ELKEElervqqsytlnenELERVRG- 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 208 YSEELRESKRRYESRVVEIDSGRQ-----QDYESKLADALTDLRNQHE---EQLR-IYKEEIE-----KTYNSKLENARS 273
Cdd:pfam06160 334 LEKQLEELEKRYDEIVERLEEKEVayselQEELEEILEQLEEIEEEQEefkESLQsLRKDELEareklDEFKLELREIKR 413
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528504246 274 SAERnSHL-----------------VGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIREL 320
Cdd:pfam06160 414 LVEK-SNLpglpesyldyffdvsdeIEDLADELNEVPLNMDEVNRLLDEAQDDVDTLYEKTEEL 476
|
|
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
42-352 |
9.70e-04 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 42.36 E-value: 9.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 42 YIDKVRSLEVENAGLRMRITESETEISRELSGmkaAYEAELAdARKTLDSVAKERARLQLELSKVREDYKELKARNGKKE 121
Cdd:pfam15070 48 SVSQVQELETSLAELKNQAAVPPAEEEQPPAG---PSEEEQR-LQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 122 ADL-----------ESALARLKDLESLLNSKdASLSTALGEKRTLevevrdlKAQLAKLEgslnDAKKQLQDEMLRRVDA 190
Cdd:pfam15070 124 QRLleleraaerwgEQAEDRKQILEDMQSDR-ATISRALSQNREL-------KEQLAELQ----NGFVKLTNENMELTSA 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 191 ENRIQTLKEELEFQKNIYSEELRESKRRYESRVVEIDSGRQQ--DYESKLadaltdlrNQHE---EQLRIYKEEIEKTY- 264
Cdd:pfam15070 192 LQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQrdQYLAHL--------QQYVaayQQLASEKEELHKQYl 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 265 -NSKLENARSSAERNSHL-VGAAHEELQQTRVRMEGVSSQLSQLQKQL-------------------AAREAKIRELEEA 323
Cdd:pfam15070 264 lQTQLMDRLQHEEVQGKVaAEMARQELQETQERLEALTQQNQQLQAQLsllanpgegdgleseeeeeEAPRPSLSIPEDF 343
|
330 340 350
....*....|....*....|....*....|.
gi 528504246 324 LSRER--DILRRRLEDKEKEMAEMRQRMQQQ 352
Cdd:pfam15070 344 ESREAmvAFFNSALAQAEEERAELRRQLKEQ 374
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
124-375 |
1.37e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 124 LESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELef 203
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAL-- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 204 qKNIYSeeLRESKRRYESRVVEIDSgrqqdyeskladaltdlRNQHEEQLRIYKEEIEKTYNsKLENARSSAERNSHLvg 283
Cdd:PRK01156 242 -NELSS--LEDMKNRYESEIKTAES-----------------DLSMELEKNNYYKELEERHM-KIINDPVYKNRNYIN-- 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 284 aaheELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELE--EALSRERDILRRRLEDKEKEMAEMRQRMqqqlDEYQELLD 361
Cdd:PRK01156 299 ----DYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSvlQKDYNDYIKKKSRYDDLNNQILELEGYE----MDYNSYLK 370
|
250
....*....|....
gi 528504246 362 IKLALDMEISAYRK 375
Cdd:PRK01156 371 SIESLKKKIEEYSK 384
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
68-201 |
1.39e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 68 SRELSGMKAAYE------AELADA----RKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESL 137
Cdd:PRK09039 45 SREISGKDSALDrlnsqiAELADLlsleRQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQE 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528504246 138 LNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKqlqdemlRRVDAENRIQTLKEEL 201
Cdd:PRK09039 125 LDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK-------RDRESQAKIADLGRRL 181
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
1-392 |
1.40e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.65 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 1 METPGQKRSSRGGVTNVLSPTRISRLQEKEDLSNLNDRLAVYidkvrSLEVENAGLRMRITESETEISRELSGMKAAYEA 80
Cdd:pfam05557 75 AELNRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSEL-----RRQIQRAELELQSTNSELEELQERLDLLKAKAS 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 81 ELADARKTLDSVAKERARLQLELskvredyKELKARNGKKEADLE------SALARLKDLESL---LNSKDASLSTALGE 151
Cdd:pfam05557 150 EAEQLRQNLEKQQSSLAEAEQRI-------KELEFEIQSQEQDSEivknskSELARIPELEKElerLREHNKHLNENIEN 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 152 KRTLEVEVRDLKAQLAKLEGS-----------------LNDAKKQLQD---EMLRRVDAENRIQTLKeelefQKNIyseE 211
Cdd:pfam05557 223 KLLLKEEVEDLKRKLEREEKYreeaatlelekekleqeLQSWVKLAQDtglNLRSPEDLSRRIEQLQ-----QREI---V 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 212 LRESKRRYESRVVEIDSGRQQ------DYESKLADALTDLRNQHEEQLRIYKE------------EIEKTYNSKLENARS 273
Cdd:pfam05557 295 LKEENSSLTSSARQLEKARREleqelaQYLKKIEDLNKKLKRHKALVRRLQRRvllltkerdgyrAILESYDKELTMSNY 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 274 SAERNSHLVGAAhEELQQTRVRMEGVSSQLSQLQ------KQLAA---REAKI---------------------RELEEa 323
Cdd:pfam05557 375 SPQLLERIEEAE-DMTQKMQAHNEEMEAQLSVAEeelggyKQQAQtleRELQAlrqqesladpsyskeevdslrRKLET- 452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 324 LSRERDILRRRLEDKEKEMA--EMRQ------------RMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEERLRLSPS 389
Cdd:pfam05557 453 LELERQRLREQKNELEMELErrCLQGdydpkktkvlhlSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLR 532
|
...
gi 528504246 390 PPP 392
Cdd:pfam05557 533 LPE 535
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
156-386 |
1.42e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 156 EVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLkEELEFQKNIYSEElreskrRYESRVVEIdsgrqqdyE 235
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSAL-NRLLPRLNLLADE------TLADRVEEI--------R 900
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 236 SKLADALTDLR--NQHEEQLriykEEIEKTYnSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSqLSQLQKQLAAR 313
Cdd:PRK04863 901 EQLDEAEEAKRfvQQHGNAL----AQLEPIV-SVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTE-VVQRRAHFSYE 974
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 314 EA-KIRELEEALSrerDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLL--------------- 377
Cdd:PRK04863 975 DAaEMLAKNSDLN---EKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLqelkqelqdlgvpad 1051
|
....*....
gi 528504246 378 EGEEERLRL 386
Cdd:PRK04863 1052 SGAEERARA 1060
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
258-384 |
1.53e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 258 EEIEKTYNSKLENARSSAERNSHL-VGAAHEELQQTRvrmegvssqlSQLQKQLAAREAKIRELEEALSRERDILRRRLE 336
Cdd:PRK12704 34 KEAEEEAKRILEEAKKEAEAIKKEaLLEAKEEIHKLR----------NEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 528504246 337 DKEKEmaemRQRMQQQLDEYQELLDIklaLDMEISAYRKLLEGEEERL 384
Cdd:PRK12704 104 LLEKR----EEELEKKEKELEQKQQE---LEKKEEELEELIEEQLQEL 144
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
21-361 |
2.06e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.26 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 21 TRISRLQEKEDLSNlndrlavyidKVRSLEVENAGLRMRITESETEISRElsgmkaaYEAELADARKTLDSVAKERARLQ 100
Cdd:pfam05557 55 KRIRLLEKREAEAE----------EALREQAELNRLKKKYLEALNKKLNE-------KESQLADAREVISCLKNELSELR 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 101 LELSKVREdykELKARNGKKEaDLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKqL 180
Cdd:pfam05557 118 RQIQRAEL---ELQSTNSELE-ELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQDSEIVKN-S 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 181 QDEMLRRVDAENRIQTLKEELEF------QKNIYSEELRESKRRYEsrvveidsgRQQDYESKLADalTDLRNQHEEQLR 254
Cdd:pfam05557 193 KSELARIPELEKELERLREHNKHlnenieNKLLLKEEVEDLKRKLE---------REEKYREEAAT--LELEKEKLEQEL 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 255 IYKEEIEKTYNSKL---------------ENARSSAERNSHLVGAAHEELQQTRVRME--GVSSQLSQLQKQLAAREAKI 317
Cdd:pfam05557 262 QSWVKLAQDTGLNLrspedlsrrieqlqqREIVLKEENSSLTSSARQLEKARRELEQElaQYLKKIEDLNKKLKRHKALV 341
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 528504246 318 RELEEA---LSRERDILRRRLE--DKEKEMAEMRQRMQQQLDEYQELLD 361
Cdd:pfam05557 342 RRLQRRvllLTKERDGYRAILEsyDKELTMSNYSPQLLERIEEAEDMTQ 390
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
50-357 |
2.08e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 50 EVENAGLRMRITESETEISRELSGMKAAYEA-------ELADARKTLDSVAKERARLQLELSKVREDYKEL-KARNGKKE 121
Cdd:TIGR00606 830 EKQEKQHELDTVVSKIELNRKLIQDQQEQIQhlksktnELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLiREIKDAKE 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 122 ADLESALArlkdLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLR-RVDAENRIQTLK-- 198
Cdd:TIGR00606 910 QDSPLETF----LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDyLKQKETELNTVNaq 985
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 199 -EELEFQKNIYSEELRESKRryesrvvEIDSGRQQdyESKLADALTDLRNQH-----EEQLRIYKEEIEKTYNSKLENAR 272
Cdd:TIGR00606 986 lEECEKHQEKINEDMRLMRQ-------DIDTQKIQ--ERWLQDNLTLRKRENelkevEEELKQHLKEMGQMQVLQMKQEH 1056
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 273 SSAERNSHLVGAAHEELQQtrvRMEGVSSQLSQLQKQLaaREAKIRELEEALsRERDILRRRLEDKEKEMAEMRQRMQQQ 352
Cdd:TIGR00606 1057 QKLEENIDLIKRNHVLALG---RQKGYEKEIKHFKKEL--REPQFRDAEEKY-REMMIVMRTTELVNKDLDIYYKTLDQA 1130
|
....*
gi 528504246 353 LDEYQ 357
Cdd:TIGR00606 1131 IMKFH 1135
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
22-179 |
2.50e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 22 RISRLQEKedLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGM-----------------------KAAY 78
Cdd:COG4942 63 RIAALARR--IRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALyrlgrqpplalllspedfldavrRLQY 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 79 EAELADARK----TLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALgekRT 154
Cdd:COG4942 141 LKYLAPARReqaeELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL---AE 217
|
170 180
....*....|....*....|....*
gi 528504246 155 LEVEVRDLKAQLAKLEGSLNDAKKQ 179
Cdd:COG4942 218 LQQEAEELEALIARLEAEAAAAAER 242
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
232-385 |
2.54e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 2.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 232 QDYESKLaDALTDLRNQHEEQLRIYKEEIEKtYNSKLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQla 311
Cdd:COG1579 13 QELDSEL-DRLEHRLKELPAELAELEDELAA-LEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNN-- 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 528504246 312 areakiRELEeALSRERDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEERLR 385
Cdd:COG1579 89 ------KEYE-ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELE 155
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
252-367 |
2.76e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.85 E-value: 2.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 252 QLRIYKEEIEKTYNSKLENARSS-----AERNSHLVGAAHEELQQTRVRMEGVSS---QLSQLQKQLAAREAKIRELEEA 323
Cdd:PRK12705 27 KRQRLAKEAERILQEAQKEAEEKleaalLEAKELLLRERNQQRQEARREREELQReeeRLVQKEEQLDARAEKLDNLENQ 106
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 528504246 324 LSR----------ERDILRRRLEDKEKEMAEMRQrmQQQLDEYQELLDIKLALD 367
Cdd:PRK12705 107 LEErekalsarelELEELEKQLDNELYRVAGLTP--EQARKLLLKLLDAELEEE 158
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
134-360 |
3.08e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 40.81 E-value: 3.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 134 LESLLNSKDASLSTALGEKRtlevevrdLKAQLAKLEGSLNDAKKQLQDEMLRRVDA-ENRIQTLKEELEFQKNI----- 207
Cdd:PRK10929 8 LMAWLLSWGAYAATAPDEKQ--------ITQELEQAKAAKTPAQAEIVEALQSALNWlEERKGSLERAKQYQQVIdnfpk 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 208 YSEELRE----------------SKRRYESRVVEIDS-----GRQ----QDYESKLADALTDLRNQHEEQLRIYKEeiek 262
Cdd:PRK10929 80 LSAELRQqlnnerdeprsvppnmSTDALEQEILQVSSqllekSRQaqqeQDRAREISDSLSQLPQQQTEARRQLNE---- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 263 tynsklenarssAERNSHLVGAAHEELQQtrvrmegvsSQLSQLQKQLAAREAKIRELEEA-LS--RERDILRRRledke 339
Cdd:PRK10929 156 ------------IERRLQTLGTPNTPLAQ---------AQLTALQAESAALKALVDELELAqLSanNRQELARLR----- 209
|
250 260
....*....|....*....|.
gi 528504246 340 kemAEMRQRMQQQLDEYQELL 360
Cdd:PRK10929 210 ---SELAKKRSQQLDAYLQAL 227
|
|
| OmpH |
pfam03938 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
304-360 |
3.37e-03 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 461098 [Multi-domain] Cd Length: 140 Bit Score: 38.33 E-value: 3.37e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 528504246 304 SQLQKQLAAREAKIRELEEALSRERDILRRRLEDKEKEMAEMRQRMQQQLDEYQELL 360
Cdd:pfam03938 29 KKRQAELEAKQKELQKLYEELQKDGALLEEEREEKEQELQKKEQELQQLQQKAQQEL 85
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
79-329 |
3.44e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 3.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 79 EAELADARKTLDSVAKERARLQLELSKVREDYKELKARngkkeadlESALARLKDLESLLnskdaslstalgEKRTLEVE 158
Cdd:COG3096 835 EAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQ--------LQLLNKLLPQANLL------------ADETLADR 894
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 159 VRDLKAQLAKLEgslnDAKK--QLQDEMLRRVdaENRIQTLK------EELEFQKNIYSEELRESKRRYE--SRVVE--- 225
Cdd:COG3096 895 LEELREELDAAQ----EAQAfiQQHGKALAQL--EPLVAVLQsdpeqfEQLQADYLQAKEQQRRLKQQIFalSEVVQrrp 968
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 226 ----IDSGRQQDYESKLADAL-------TDLRNQHEEQLRIYKEEIEKtYNSKLENARSSAERNSHLVGAAHEELQQT-- 292
Cdd:COG3096 969 hfsyEDAVGLLGENSDLNEKLrarleqaEEARREAREQLRQAQAQYSQ-YNQVLASLKSSRDAKQQTLQELEQELEELgv 1047
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 528504246 293 ----------RVRMEGVSSQLS-------QLQKQLAAREAKIRELEEALSR-ERD 329
Cdd:COG3096 1048 qadaeaeeraRIRRDELHEELSqnrsrrsQLEKQLTRCEAEMDSLQKRLRKaERD 1102
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
85-320 |
3.82e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.20 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 85 ARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLK---------DLESLLNSKDASLSTALGEKRTL 155
Cdd:PRK04778 196 AREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVeegyhldhlDIEKEIQDLKEQIDENLALLEEL 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 156 EVEvrDLKAQLAKLEGSLN----------DAKK---QLQDEMLRRVD-AENRIQTLKEELEFQKNIY------------- 208
Cdd:PRK04778 276 DLD--EAEEKNEEIQERIDqlydilerevKARKyveKNSDTLPDFLEhAKEQNKELKEEIDRVKQSYtlneselesvrql 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 209 SEELRESKRRYESRVVEIDSGRQ-----QDYESKLADALTDLRNQHE---EQLR-IYKEEIE-----KTYNSKLENARSS 274
Cdd:PRK04778 354 EKQLESLEKQYDEITERIAEQEIayselQEELEEILKQLEEIEKEQEklsEMLQgLRKDELEareklERYRNKLHEIKRY 433
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528504246 275 AERnSHL-----------------VGAAHEELQQTRVRMEGVSSQLSQLQKQLAAREAKIREL 320
Cdd:PRK04778 434 LEK-SNLpglpedylemffevsdeIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEEL 495
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
162-378 |
3.98e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.48 E-value: 3.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 162 LKAQLAKLEGSLNDAKK--QLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRESKRRY-----ESRVVEIDSGRQQDY 234
Cdd:pfam05483 97 IEAELKQKENKLQENRKiiEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLcnllkETCARSAEKTKKYEY 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 235 E-SKLADALTDLRNQHEEQLRIYKEEIEKTYNSKLE---NARSSAERNSHLvgaaHEELQQtrvRMEGVSSQLSQLQKQL 310
Cdd:pfam05483 177 ErEETRQVYMDLNNNIEKMILAFEELRVQAENARLEmhfKLKEDHEKIQHL----EEEYKK---EINDKEKQVSLLLIQI 249
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 528504246 311 AAREAKIRELEEALSRERDILRRrLEDKEKEMAE-MRQRMQQQLDEYQELLDIKLALDMEISAYRKLLE 378
Cdd:pfam05483 250 TEKENKMKDLTFLLEESRDKANQ-LEEKTKLQDEnLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEE 317
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
75-385 |
4.18e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 75 KAAYEAELADARKTLDSVAK---ERARLQLELSKVREDYKELKARNGKKEADlesalARLKDLESLLNSKDASLSTALGE 151
Cdd:PTZ00121 1330 KADAAKKKAEEAKKAAEAAKaeaEAAADEAEAAEEKAEAAEKKKEEAKKKAD-----AAKKKAEEKKKADEAKKKAEEDK 1404
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 152 KRTLEVEVRdlkaqlaklegslnDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNiySEELR---ESKRRYESRVVEIDS 228
Cdd:PTZ00121 1405 KKADELKKA--------------AAAKKKADEAKKKAEEKKKADEAKKKAEEAKK--ADEAKkkaEEAKKAEEAKKKAEE 1468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 229 GRQQDYESKLADaltdlRNQHEEQLRIYKEEIEKtynsKLENARSSAE--RNSHLVGAAHEELQQTRVRMEGVSSQLSQL 306
Cdd:PTZ00121 1469 AKKADEAKKKAE-----EAKKADEAKKKAEEAKK----KADEAKKAAEakKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 307 QKQLAAREA-KIRELEEALSRE--RDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIKLALDMEISAYRKLLEGEEER 383
Cdd:PTZ00121 1540 KKAEEKKKAdELKKAEELKKAEekKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
..
gi 528504246 384 LR 385
Cdd:PTZ00121 1620 IK 1621
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
66-338 |
4.66e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 66 EISRELSGMKAAYEAELADARKTLDSVAK-ERARLQLELSKVREDYKELKARNG----KKEADLESALARLKDLESLLNS 140
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKaEEAKKADEAKKAEEKKKADELKKAeelkKAEEKKKAEEAKKAEEDKNMAL 1580
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 141 KDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQKNIYSEELRESKRryE 220
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE--E 1658
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 221 SRVVEIDSGRQQDYESKLADAL---TDLRNQHEEQLRIYKEEIEKTYN---------SKLENARSSAERNSHLVGAAHEE 288
Cdd:PTZ00121 1659 NKIKAAEEAKKAEEDKKKAEEAkkaEEDEKKAAEALKKEAEEAKKAEElkkkeaeekKKAEELKKAEEENKIKAEEAKKE 1738
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 289 LQQTRVRM------EGVSSQLSQLQKQLAAREAKIRELEEALSRE----RDILRRRLEDK 338
Cdd:PTZ00121 1739 AEEDKKKAeeakkdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEeldeEDEKRRMEVDK 1798
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
231-359 |
4.89e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 39.76 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 231 QQDYESKLADALTDLRNQHEEQLRIYKEEIEKtYNSKLEnaRSSAERNshlvgaahEELQQTRVRMEGVSSQLSQLQKQL 310
Cdd:PRK12704 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEIHK-LRNEFE--KELRERR--------NELQKLEKRLLQKEENLDRKLELL 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 528504246 311 AAREAKIRELEEALSRERDIlrrrLEDKEKEMAEMRQRMQQQLDEYQEL 359
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQE----LEKKEEELEELIEEQLQELERISGL 150
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
91-297 |
5.00e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 39.91 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 91 SVAKERARLQLELSKVREDYKELK-ARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKL 169
Cdd:PRK05771 47 KLRSLLTKLSEALDKLRSYLPKLNpLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 170 E--GSLN-DAKKQLQDEMLR----RVDAENriqtlKEELEFQKNIYSEELRESKRRYESRVVEIDSGRQQDYESKLADA- 241
Cdd:PRK05771 127 EpwGNFDlDLSLLLGFKYVSvfvgTVPEDK-----LEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLg 201
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 528504246 242 -----------LTDLRNQHEEQLriykEEIEKTYNSKLENARSSAERNSHLVGAAHEELQQTRVRME 297
Cdd:PRK05771 202 ferleleeegtPSELIREIKEEL----EEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAE 264
|
|
| GBP_C |
pfam02841 |
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral ... |
285-384 |
5.72e-03 |
|
Guanylate-binding protein, C-terminal domain; Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Pssm-ID: 460721 [Multi-domain] Cd Length: 297 Bit Score: 39.19 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 285 AHEELQQTRVRMEGVSSQLSQLQKQLAAREAKI---RELEEALSRERDILRRRLEDKEKEMAEMRQRMQQQLDEYQElld 361
Cdd:pfam02841 174 AEEVLQEFLQSKEAVEEAILQTDQALTAKEKAIeaeRAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIE--- 250
|
90 100
....*....|....*....|...
gi 528504246 362 iKLALDmeisayRKLLEGEEERL 384
Cdd:pfam02841 251 -KMEAE------REQLLAEQERM 266
|
|
| TPR_MLP1_2 |
pfam07926 |
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ... |
230-348 |
6.62e-03 |
|
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.
Pssm-ID: 462316 [Multi-domain] Cd Length: 129 Bit Score: 37.23 E-value: 6.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 230 RQQDYESKLADALTDLRNQHEEqlriykeeiektynskLENARSSAERNSHLVGAAHEELQQTRVRMEGVSSQLSQLQKQ 309
Cdd:pfam07926 16 EAADAEAQLQKLQEDLEKQAEI----------------AREAQQNYERELVLHAEDIKALQALREELNELKAEIAELKAE 79
|
90 100 110
....*....|....*....|....*....|....*....
gi 528504246 310 LAAREAKIRELEEALSRERDILrrrledkEKEMAEMRQR 348
Cdd:pfam07926 80 AESAKAELEESEESWEEQKKEL-------EKELSELEKR 111
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
27-274 |
8.12e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 39.17 E-value: 8.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 27 QEKEDLSNLNDRLAVYIDKVRSLEV----ENAGLRMRITESETEISRELSGMK---AAYEAELADARKTLDSV-----AK 94
Cdd:COG5185 243 SELEDLAQTSDKLEKLVEQNTDLRLeklgENAESSKRLNENANNLIKQFENTKekiAEYTKSIDIKKATESLEeqlaaAE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 95 ERARLQLELSKVREDYKELKARNGKKEADLESALARLK-DLESLLNSKDASLSTALGE--KRTLEVEVRDLKAQLAKLEG 171
Cdd:COG5185 323 AEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKeEIENIVGEVELSKSSEELDsfKDTIESTKESLDEIPQNQRG 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 172 SLNDAKKQLQDEMLRrvdAENRIQTLKEELEFQKNIYSE---ELRESKRRYESRVVEIDSGRQQDYESKL---------- 238
Cdd:COG5185 403 YAQEILATLEDTLKA---ADRQIEELQRQIEQATSSNEEvskLLNELISELNKVMREADEESQSRLEEAYdeinrsvrsk 479
|
250 260 270
....*....|....*....|....*....|....*....
gi 528504246 239 ADALTDLRNQHEEQLRIYKEEIEK---TYNSKLENARSS 274
Cdd:COG5185 480 KEDLNEELTQIESRVSTLKATLEKlraKLERQLEGVRSK 518
|
|
| Tropomyosin_1 |
pfam12718 |
Tropomyosin like; This family is a set of eukaryotic tropomyosins. Within the yeast Tpm1 and ... |
122-241 |
8.40e-03 |
|
Tropomyosin like; This family is a set of eukaryotic tropomyosins. Within the yeast Tpm1 and Tpm2, biochemical and sequence analyses indicate that Tpm2p spans four actin monomers along a filament, whereas Tpm1p spans five. Despite its shorter length, Tpm2p can compete with Tpm1p for binding to F-actin. Over-expression of Tpm2p in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1p. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis. The family also contains higher eukaryote Tpm3 members.
Pssm-ID: 403808 [Multi-domain] Cd Length: 142 Bit Score: 37.28 E-value: 8.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 122 ADLESALARLKDLESLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAEN---RIQTLK 198
Cdd:pfam12718 7 LEAENAQERAEELEEKVKELEQENLEKEQEIKSLTHKNQQLEEEVEKLEEQLKEAKEKAEESEKLKTNNENltrKIQLLE 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 528504246 199 EELE-FQKNIYS--EELRESKRR---YESRVVEIDSGRQQDyESKLADA 241
Cdd:pfam12718 87 EELEeSDKRLKEttEKLRETDVKaehLERKVQALEQERDEW-EKKYEEL 134
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
57-207 |
9.03e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 38.85 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 57 RMRITES-ETEISRELSGMKAAYEAELADARKTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLE 135
Cdd:smart00787 138 RMKLLEGlKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLL 217
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 528504246 136 SLLNSKDASLSTALGEKRTLEVEVRDLKAQLAKLEGSLNDAKKQLQDemlRRVDAENRIQTLKEELEFQKNI 207
Cdd:smart00787 218 QEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ---CRGFTFKEIEKLKEQLKLLQSL 286
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
8-352 |
9.53e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 39.35 E-value: 9.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 8 RSSRGGVTNVLSPTRISRLQEKEDLSNLNDRLAVYIDKVRSLEVENAGLRMRITESETEISRELSGMKAAyeaeladaRK 87
Cdd:pfam07111 309 NRWREKVFALMVQLKAQDLEHRDSVKQLRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGL--------QM 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 88 TLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLESLLNSKDASLSTALGEKRTLE---------VE 158
Cdd:pfam07111 381 ELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVRKVHTIKglmarkvalAQ 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 159 VR---------------DLKAQLAKLEGSLN--DAKKQLQDEMLRRVDAENRIQTLKEELEFQK--NIYSEELRESKRRY 219
Cdd:pfam07111 461 LRqescpppppappvdaDLSLELEQLREERNrlDAELQLSAHLIQQEVGRAREQGEAERQQLSEvaQQLEQELQRAQESL 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 220 ESRVVEIDSGRQQDYESklADALTDLRNQHEEQLRIYKEEIEKTY---NSKLENARSSAERnshlvgaaheELQQTRVRM 296
Cdd:pfam07111 541 ASVGQQLEVARQGQQES--TEEAASLRQELTQQQEIYGQALQEKVaevETRLREQLSDTKR----------RLNEARREQ 608
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 297 EGVSSQLSQLQKQLAAREAKIREL----EEALSRERDILRRRLEDKEKEMAEMRQRMQQQ 352
Cdd:pfam07111 609 AKAVVSLRQIQHRATQEKERNQELrrlqDEARKEEGQRLARRVQELERDKNLMLATLQQE 668
|
|
| PspA_IM30 |
pfam04012 |
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent ... |
81-205 |
9.73e-03 |
|
PspA/IM30 family; This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.
Pssm-ID: 461130 [Multi-domain] Cd Length: 215 Bit Score: 38.12 E-value: 9.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 81 ELADARKTLDSVAKErarLQLELSKVREDYKELKARNGKKEADLESALARLKDLES-----LLNSKDASLSTALGEKRTL 155
Cdd:pfam04012 19 KAEDPEKMLEQAIRD---MQSELVKARQALAQTIARQKQLERRLEQQTEQAKKLEEkaqaaLTKGNEELAREALAEKKSL 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 528504246 156 EVEVRDLKAQLAKLEGSLNDAKKQLQDEMLRRVDAENRIQTLKEELEFQK 205
Cdd:pfam04012 96 EKQAEALETQLAQQRSAVEQLRKQLAALETKIQQLKAKKNLLKARLKAAK 145
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
57-219 |
9.87e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 38.92 E-value: 9.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 57 RMRITESETEISRELSGMKAAYEAELADARkTLDSVAKERARLQLELSKVREDYKELKARNGKKEADLESALARLKDLES 136
Cdd:PRK12705 27 KRQRLAKEAERILQEAQKEAEEKLEAALLE-AKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLEN 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 137 LLNSKDASLSTalgekRTLEVEVRDLKAQLaKLEGSLNDAKKQLQDEMLRRVDAEnriqtLKEELEFQKNIYSEELRESK 216
Cdd:PRK12705 106 QLEEREKALSA-----RELELEELEKQLDN-ELYRVAGLTPEQARKLLLKLLDAE-----LEEEKAQRVKKIEEEADLEA 174
|
...
gi 528504246 217 RRY 219
Cdd:PRK12705 175 ERK 177
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
287-385 |
9.98e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 38.73 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528504246 287 EELQQTRVRMEGVSSQLSQLQKQLAAREAKIRELEEALSR---ERDILRRRLEDKEKEMAEMRQRMQQQLDEYQELLDIK 363
Cdd:COG4372 52 EELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAaqaELAQAQEELESLQEEAEELQEELEELQKERQDLEQQR 131
|
90 100
....*....|....*....|..
gi 528504246 364 LALDMEISAYRKLLEGEEERLR 385
Cdd:COG4372 132 KQLEAQIAELQSEIAEREEELK 153
|
|
| |
