NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|357483147|ref|XP_003611860|]
View 

oxygen-evolving enhancer protein 1, chloroplastic [Medicago truncatula]

Protein Classification

photosystem II manganese-stabilizing polypeptide( domain architecture ID 10010591)

photosystem II manganese-stabilizing polypeptide (MSP) binds to a putative Mn-binding protein and keeps 2 of the 4 Mn-atoms associated with PSII

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PLN00037 PLN00037
photosystem II oxygen-evolving enhancer protein 1; Provisional
23-328 0e+00

photosystem II oxygen-evolving enhancer protein 1; Provisional


:

Pssm-ID: 177671  Cd Length: 313  Bit Score: 563.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  23 STTLHLKSTQSISKAFGLEHNGAKLTCSLQ----DIAHRFADSAKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTY 98
Cdd:PLN00037   4 RASAQLRSSASVSKAFGLEPASARLTCSLQsdlkDFADKCVDAGKAAGFALAASALVASGASAEGVPKRLTYDEIQSLTY 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  99 LEVKGTGTANQCPTIEGGSDSFSFKSGKYNAKKFCLEPTSFTVKSEGITKNSPLDFQNTKLMTRLTYTLDEIEGPFEVSP 178
Cdd:PLN00037  84 LEVKGTGTANQCPTVDGGDESFSFKPGKYALKKFCLEPTSFTVKAESVFKNGEPEFQNTKLMTRLTYTLDEIEGPLKVGS 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147 179 DGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAG 258
Cdd:PLN00037 164 DGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKELVATGKPESFGGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAG 243
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147 259 GRGDEEELGKENNKSAASSKGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLE 328
Cdd:PLN00037 244 GRGDEEELAKENNKNTAASTGNITLSVAKSNPETGEIAGVFESIQPSDTDLGSKVPKDVKIQGIWYAQLE 313
 
Name Accession Description Interval E-value
PLN00037 PLN00037
photosystem II oxygen-evolving enhancer protein 1; Provisional
23-328 0e+00

photosystem II oxygen-evolving enhancer protein 1; Provisional


Pssm-ID: 177671  Cd Length: 313  Bit Score: 563.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  23 STTLHLKSTQSISKAFGLEHNGAKLTCSLQ----DIAHRFADSAKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTY 98
Cdd:PLN00037   4 RASAQLRSSASVSKAFGLEPASARLTCSLQsdlkDFADKCVDAGKAAGFALAASALVASGASAEGVPKRLTYDEIQSLTY 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  99 LEVKGTGTANQCPTIEGGSDSFSFKSGKYNAKKFCLEPTSFTVKSEGITKNSPLDFQNTKLMTRLTYTLDEIEGPFEVSP 178
Cdd:PLN00037  84 LEVKGTGTANQCPTVDGGDESFSFKPGKYALKKFCLEPTSFTVKAESVFKNGEPEFQNTKLMTRLTYTLDEIEGPLKVGS 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147 179 DGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAG 258
Cdd:PLN00037 164 DGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKELVATGKPESFGGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAG 243
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147 259 GRGDEEELGKENNKSAASSKGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLE 328
Cdd:PLN00037 244 GRGDEEELAKENNKNTAASTGNITLSVAKSNPETGEIAGVFESIQPSDTDLGSKVPKDVKIQGIWYAQLE 313
MSP pfam01716
Manganese-stabilising protein / photosystem II polypeptide; This family consists of the 33 KDa ...
97-327 3.04e-132

Manganese-stabilising protein / photosystem II polypeptide; This family consists of the 33 KDa photosystem II polypeptide from the oxygen evolving complex (OEC) of plants and cyanobacteria. The protein is also known as the manganese-stabilising protein as it is associated with the manganese complex of the OEC and may provide the ligands for the complex.


Pssm-ID: 426394  Cd Length: 241  Bit Score: 376.21  E-value: 3.04e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147   97 TYLEVKGTGTANQCPTI-EGGSDSFSFKSGK-YNAKKFCLEPTSFTVKSEGITKNSPLDFQNTKLMTRLTYTLDEIEGPF 174
Cdd:pfam01716   3 TYDQIKGTGLANKCPTLsETARGSISIDPGGsYRLTDLCLEPTEFFVKEEPANKRQEAEFVPGKLLTRYTSSLDQIYGDL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  175 EVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKP--------DSFSGEFLVPSYRGSSFLDPKGRGAS 246
Cdd:pfam01716  83 KVNEDGSLTFKEKDGIDFQPITVQLPGGERVPFLFTVKDLVATTQPgltsintsTDFEGEFKVPSYRGSNFLDPKGRGLA 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  247 TGYDNAVALPAGgrGDEEELGKENNKSAASSKGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQ 326
Cdd:pfam01716 163 TGYDNAVALPAA--ADDEELFRENVKRFDTGKGKISLQVAKVDSETGEIAGVFESEQPSDTDLGAKEPKEVKIRGIFYAR 240

                  .
gi 357483147  327 L 327
Cdd:pfam01716 241 L 241
PsbO COG5729
Photosystem II reaction center Mn-stabilizing protein, PsbO [Energy production and conversion]; ...
64-329 7.40e-112

Photosystem II reaction center Mn-stabilizing protein, PsbO [Energy production and conversion]; Photosystem II reaction center Mn-stabilizing protein, PsbO is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444439  Cd Length: 275  Bit Score: 325.79  E-value: 7.40e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  64 IAGF-ALATSALVV-SGASAEGAPKRLTFDEIqsktylevKGTGTANQCPTI-EGGSDSFSFKSGK-YNAKKFCLEPTSF 139
Cdd:COG5729    7 IAAFlALCLGVLTAcSEGPAAADRDLLTYDQI--------LGTGLANKCPQLsETTRGSIPIDPGQsYRITDLCLEPTEF 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147 140 TVKSEGITKNSPLDFQNTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGK 219
Cdd:COG5729   79 FVKEEPANKRQEAEFVPGKLLTRYTSSLDQIQGTLKVNEDGSLTFTEEDGIDFQPITVQLPGGEQVPFLFTIKGLVASTQ 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147 220 PD--------SFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAggRGDEEELGKENNKSAASSKGKITLSVTQSKPE 291
Cdd:COG5729  159 PGltsintstDFEGEFKVPSYRGANFLDPKGRGVASGYDNAVALPA--QADSEELRRANVKRFDTGKGKISLQVAKVDSE 236
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 357483147 292 TGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
Cdd:COG5729  237 TGEIAGTFESEQPSDTDLGAKEPLEVKIRGIFYARVEP 274
 
Name Accession Description Interval E-value
PLN00037 PLN00037
photosystem II oxygen-evolving enhancer protein 1; Provisional
23-328 0e+00

photosystem II oxygen-evolving enhancer protein 1; Provisional


Pssm-ID: 177671  Cd Length: 313  Bit Score: 563.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  23 STTLHLKSTQSISKAFGLEHNGAKLTCSLQ----DIAHRFADSAKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTY 98
Cdd:PLN00037   4 RASAQLRSSASVSKAFGLEPASARLTCSLQsdlkDFADKCVDAGKAAGFALAASALVASGASAEGVPKRLTYDEIQSLTY 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  99 LEVKGTGTANQCPTIEGGSDSFSFKSGKYNAKKFCLEPTSFTVKSEGITKNSPLDFQNTKLMTRLTYTLDEIEGPFEVSP 178
Cdd:PLN00037  84 LEVKGTGTANQCPTVDGGDESFSFKPGKYALKKFCLEPTSFTVKAESVFKNGEPEFQNTKLMTRLTYTLDEIEGPLKVGS 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147 179 DGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAG 258
Cdd:PLN00037 164 DGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKELVATGKPESFGGDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAG 243
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147 259 GRGDEEELGKENNKSAASSKGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLE 328
Cdd:PLN00037 244 GRGDEEELAKENNKNTAASTGNITLSVAKSNPETGEIAGVFESIQPSDTDLGSKVPKDVKIQGIWYAQLE 313
MSP pfam01716
Manganese-stabilising protein / photosystem II polypeptide; This family consists of the 33 KDa ...
97-327 3.04e-132

Manganese-stabilising protein / photosystem II polypeptide; This family consists of the 33 KDa photosystem II polypeptide from the oxygen evolving complex (OEC) of plants and cyanobacteria. The protein is also known as the manganese-stabilising protein as it is associated with the manganese complex of the OEC and may provide the ligands for the complex.


Pssm-ID: 426394  Cd Length: 241  Bit Score: 376.21  E-value: 3.04e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147   97 TYLEVKGTGTANQCPTI-EGGSDSFSFKSGK-YNAKKFCLEPTSFTVKSEGITKNSPLDFQNTKLMTRLTYTLDEIEGPF 174
Cdd:pfam01716   3 TYDQIKGTGLANKCPTLsETARGSISIDPGGsYRLTDLCLEPTEFFVKEEPANKRQEAEFVPGKLLTRYTSSLDQIYGDL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  175 EVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGKP--------DSFSGEFLVPSYRGSSFLDPKGRGAS 246
Cdd:pfam01716  83 KVNEDGSLTFKEKDGIDFQPITVQLPGGERVPFLFTVKDLVATTQPgltsintsTDFEGEFKVPSYRGSNFLDPKGRGLA 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  247 TGYDNAVALPAGgrGDEEELGKENNKSAASSKGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQ 326
Cdd:pfam01716 163 TGYDNAVALPAA--ADDEELFRENVKRFDTGKGKISLQVAKVDSETGEIAGVFESEQPSDTDLGAKEPKEVKIRGIFYAR 240

                  .
gi 357483147  327 L 327
Cdd:pfam01716 241 L 241
PsbO COG5729
Photosystem II reaction center Mn-stabilizing protein, PsbO [Energy production and conversion]; ...
64-329 7.40e-112

Photosystem II reaction center Mn-stabilizing protein, PsbO [Energy production and conversion]; Photosystem II reaction center Mn-stabilizing protein, PsbO is part of the Pathway/BioSystem: Photosystem II


Pssm-ID: 444439  Cd Length: 275  Bit Score: 325.79  E-value: 7.40e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147  64 IAGF-ALATSALVV-SGASAEGAPKRLTFDEIqsktylevKGTGTANQCPTI-EGGSDSFSFKSGK-YNAKKFCLEPTSF 139
Cdd:COG5729    7 IAAFlALCLGVLTAcSEGPAAADRDLLTYDQI--------LGTGLANKCPQLsETTRGSIPIDPGQsYRITDLCLEPTEF 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147 140 TVKSEGITKNSPLDFQNTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTIKQLVASGK 219
Cdd:COG5729   79 FVKEEPANKRQEAEFVPGKLLTRYTSSLDQIQGTLKVNEDGSLTFTEEDGIDFQPITVQLPGGEQVPFLFTIKGLVASTQ 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357483147 220 PD--------SFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAggRGDEEELGKENNKSAASSKGKITLSVTQSKPE 291
Cdd:COG5729  159 PGltsintstDFEGEFKVPSYRGANFLDPKGRGVASGYDNAVALPA--QADSEELRRANVKRFDTGKGKISLQVAKVDSE 236
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 357483147 292 TGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
Cdd:COG5729  237 TGEIAGTFESEQPSDTDLGAKEPLEVKIRGIFYARVEP 274
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH