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Conserved domains on  [gi|1995101100|ref|XP_003589329|]
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40S ribosomal protein S3-3 [Medicago truncatula]

Protein Classification

40S ribosomal protein S3( domain architecture ID 11487987)

40S ribosomal protein S3 is involved in translation as a component of the 40S small ribosomal subunit

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PTZ00084 PTZ00084
40S ribosomal protein S3; Provisional
3-219 2.87e-146

40S ribosomal protein S3; Provisional


:

Pssm-ID: 240260 [Multi-domain]  Cd Length: 220  Bit Score: 407.13  E-value: 2.87e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100   3 TQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPEN 82
Cdd:PTZ00084    3 GQISKKRKFVADGVFYAELNEFLSRELAEDGYSGVEVRVTPIRTEIIIRATRTREVLGDKGRRIRELTSLLQKRFGFPEG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100  83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQ 162
Cdd:PTZ00084   83 KVELFAERVENRGLCAMAQAESLRYKLLEGLPVRRAAYGVLRHVMESGAKGCEVIVSGKLRAQRAKSMKFRDGYMISTGQ 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1995101100 163 PVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY 219
Cdd:PTZ00084  163 PKKDFVDSAVRHVLMRQGVIGVKVKIMLPYDPSGKNGPSAPLPDVITVLEPKEETAE 219
 
Name Accession Description Interval E-value
PTZ00084 PTZ00084
40S ribosomal protein S3; Provisional
3-219 2.87e-146

40S ribosomal protein S3; Provisional


Pssm-ID: 240260 [Multi-domain]  Cd Length: 220  Bit Score: 407.13  E-value: 2.87e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100   3 TQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPEN 82
Cdd:PTZ00084    3 GQISKKRKFVADGVFYAELNEFLSRELAEDGYSGVEVRVTPIRTEIIIRATRTREVLGDKGRRIRELTSLLQKRFGFPEG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100  83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQ 162
Cdd:PTZ00084   83 KVELFAERVENRGLCAMAQAESLRYKLLEGLPVRRAAYGVLRHVMESGAKGCEVIVSGKLRAQRAKSMKFRDGYMISTGQ 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1995101100 163 PVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY 219
Cdd:PTZ00084  163 PKKDFVDSAVRHVLMRQGVIGVKVKIMLPYDPSGKNGPSAPLPDVITVLEPKEETAE 219
uS3_euk_arch TIGR01008
ribosomal protein uS3, eukaryotic/archaeal type; This model describes ribosomal protein S3 of ...
7-210 3.70e-77

ribosomal protein uS3, eukaryotic/archaeal type; This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273393 [Multi-domain]  Cd Length: 195  Bit Score: 231.16  E-value: 3.70e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100   7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKfPENSVeL 86
Cdd:TIGR01008   1 IERKFVAEGVKRTLIDEFLEKELREAGYSGVDVRVTPLGTKVIIFAERPGLVIGRGGRRIRELTEKLQKKFG-LENPQ-I 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100  87 YAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKD 166
Cdd:TIGR01008  79 YVEEVENPELNAKVQAERIARALERGLHFRRAAYAAVRRIMEAGAKGVEVTISGKLTGERAKTEKFAAGYLKHSGEPAEE 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1995101100 167 YIDSAVRHVLLRQGVLGIKVKIMldwdpkgkqGPKTPLPDIVTI 210
Cdd:TIGR01008 159 LVDKGFAIALLKLGVLGVKVKIM---------PPDAKLPDEVEI 193
KH-II_40S_S3 cd02413
type II K-homology (KH) RNA-binding domain found in 40S ribosomal protein S3 and similar ...
5-95 4.25e-61

type II K-homology (KH) RNA-binding domain found in 40S ribosomal protein S3 and similar proteins; 40S ribosomal protein S3, also called small ribosomal subunit protein uS3, is part of the head region of the 40S ribosomal subunit and is involved in translation. It is believed to interact with mRNA as it threads its way from the latch into the channel. 40S ribosomal protein S3 has endonuclease activity and plays a role in repair of damaged DNA. It cleaves phosphodiester bonds of DNAs containing altered bases with broad specificity and cleaves supercoiled DNA more efficiently than relaxed DNA. Members of this family are mainly from prokaryotes and contain only one canonical type II K-homology (KH) domain that has the signature motif GXXG (where X represents any amino acid).


Pssm-ID: 411784  Cd Length: 91  Bit Score: 186.57  E-value: 4.25e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100   5 MSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSV 84
Cdd:cd02413     1 ISKKRKFVADGVFYAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFGFPEGSV 80
                          90
                  ....*....|.
gi 1995101100  85 ELYAEKVNNRG 95
Cdd:cd02413    81 ELYAEKVANRG 91
Ribosomal_S3_C pfam00189
Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, ...
105-188 1.15e-33

Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.


Pssm-ID: 425514 [Multi-domain]  Cd Length: 83  Bit Score: 116.31  E-value: 1.15e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100 105 LRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISsgQPVKDYIDSAVRHVLLRQGVLG 183
Cdd:pfam00189   1 IAQQLEKRVSFRRAMKQAIRRAMRAGAKGIKIIISGRLGgAERARSEKYREGRVPL--HTLRADIDYAFAEALTKYGVIG 78

                  ....*
gi 1995101100 184 IKVKI 188
Cdd:pfam00189  79 VKVWI 83
RpsC COG0092
Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S3 ...
23-142 1.10e-03

Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S3 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439862 [Multi-domain]  Cd Length: 226  Bit Score: 38.92  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100  23 EVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPensVELYAEKVNNRGLCAIAQA 102
Cdd:COG0092    41 KYLKKKLKNAGISKIEIERTANRVRVTIHTARPGIVIGKKGAEIEKLRKELEKLTGKE---VQINIVEVKKPELDAQLVA 117
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1995101100 103 ESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL 142
Cdd:COG0092   118 ENIAQQLERRVSFRRAMKRAIQRAMRAGAKGIKIQVSGRL 157
 
Name Accession Description Interval E-value
PTZ00084 PTZ00084
40S ribosomal protein S3; Provisional
3-219 2.87e-146

40S ribosomal protein S3; Provisional


Pssm-ID: 240260 [Multi-domain]  Cd Length: 220  Bit Score: 407.13  E-value: 2.87e-146
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100   3 TQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPEN 82
Cdd:PTZ00084    3 GQISKKRKFVADGVFYAELNEFLSRELAEDGYSGVEVRVTPIRTEIIIRATRTREVLGDKGRRIRELTSLLQKRFGFPEG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100  83 SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQ 162
Cdd:PTZ00084   83 KVELFAERVENRGLCAMAQAESLRYKLLEGLPVRRAAYGVLRHVMESGAKGCEVIVSGKLRAQRAKSMKFRDGYMISTGQ 162
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1995101100 163 PVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY 219
Cdd:PTZ00084  163 PKKDFVDSAVRHVLMRQGVIGVKVKIMLPYDPSGKNGPSAPLPDVITVLEPKEETAE 219
uS3_euk_arch TIGR01008
ribosomal protein uS3, eukaryotic/archaeal type; This model describes ribosomal protein S3 of ...
7-210 3.70e-77

ribosomal protein uS3, eukaryotic/archaeal type; This model describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea. TIGRFAMs model TIGR01009 describes the bacterial/organellar type, although the organellar types have a different architecture with long insertions and may score poorly. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273393 [Multi-domain]  Cd Length: 195  Bit Score: 231.16  E-value: 3.70e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100   7 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKfPENSVeL 86
Cdd:TIGR01008   1 IERKFVAEGVKRTLIDEFLEKELREAGYSGVDVRVTPLGTKVIIFAERPGLVIGRGGRRIRELTEKLQKKFG-LENPQ-I 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100  87 YAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKD 166
Cdd:TIGR01008  79 YVEEVENPELNAKVQAERIARALERGLHFRRAAYAAVRRIMEAGAKGVEVTISGKLTGERAKTEKFAAGYLKHSGEPAEE 158
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 1995101100 167 YIDSAVRHVLLRQGVLGIKVKIMldwdpkgkqGPKTPLPDIVTI 210
Cdd:TIGR01008 159 LVDKGFAIALLKLGVLGVKVKIM---------PPDAKLPDEVEI 193
KH-II_40S_S3 cd02413
type II K-homology (KH) RNA-binding domain found in 40S ribosomal protein S3 and similar ...
5-95 4.25e-61

type II K-homology (KH) RNA-binding domain found in 40S ribosomal protein S3 and similar proteins; 40S ribosomal protein S3, also called small ribosomal subunit protein uS3, is part of the head region of the 40S ribosomal subunit and is involved in translation. It is believed to interact with mRNA as it threads its way from the latch into the channel. 40S ribosomal protein S3 has endonuclease activity and plays a role in repair of damaged DNA. It cleaves phosphodiester bonds of DNAs containing altered bases with broad specificity and cleaves supercoiled DNA more efficiently than relaxed DNA. Members of this family are mainly from prokaryotes and contain only one canonical type II K-homology (KH) domain that has the signature motif GXXG (where X represents any amino acid).


Pssm-ID: 411784  Cd Length: 91  Bit Score: 186.57  E-value: 4.25e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100   5 MSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSV 84
Cdd:cd02413     1 ISKKRKFVADGVFYAELNEFLTRELAEDGYSGVEVRVTPTRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFGFPEGSV 80
                          90
                  ....*....|.
gi 1995101100  85 ELYAEKVNNRG 95
Cdd:cd02413    81 ELYAEKVANRG 91
rps3p PRK04191
30S ribosomal protein S3P; Reviewed
5-218 7.41e-51

30S ribosomal protein S3P; Reviewed


Pssm-ID: 235247 [Multi-domain]  Cd Length: 207  Bit Score: 164.65  E-value: 7.41e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100   5 MSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSV 84
Cdd:PRK04191    1 MAIEKKFVEEGLKKVMIDEYLAKELYRAGYGGMEIKKTPLGTRITIYAERPGMVIGRGGKNIRELTEILEKKFGLENPQI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100  85 ElyAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV 164
Cdd:PRK04191   81 D--VKEVENPELNARVVAFRLANALERGWHFRRAAHSAIRRIMEAGALGVEIIISGKLTGERARTEKFTEGYIKKSGEPA 158
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1995101100 165 KDYIDSAVRHVLLRQGVLGIKVKIMLdwdpkgkqgPKTPLPDIVTIHTPKEEEE 218
Cdd:PRK04191  159 EELVDRGFAIAKLKLGIIGVEVRIMP---------PDAKLPDEIEIKEPVEVEE 203
Ribosomal_S3_C pfam00189
Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, ...
105-188 1.15e-33

Ribosomal protein S3, C-terminal domain; This family contains a central domain pfam00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.


Pssm-ID: 425514 [Multi-domain]  Cd Length: 83  Bit Score: 116.31  E-value: 1.15e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100 105 LRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLR-AQRAKSMKFKDGYMISsgQPVKDYIDSAVRHVLLRQGVLG 183
Cdd:pfam00189   1 IAQQLEKRVSFRRAMKQAIRRAMRAGAKGIKIIISGRLGgAERARSEKYREGRVPL--HTLRADIDYAFAEALTKYGVIG 78

                  ....*
gi 1995101100 184 IKVKI 188
Cdd:pfam00189  79 VKVWI 83
KH-II_30S_S3_arch cd02411
type II K-homology (KH) RNA-binding domain found in archaeal 30S ribosomal protein S3 and ...
6-85 5.91e-17

type II K-homology (KH) RNA-binding domain found in archaeal 30S ribosomal protein S3 and similar proteins; 30S ribosomal protein S3, also called small ribosomal subunit protein uS3, is part of the head region of the 30S ribosomal subunit and binds to the lower part of the 30S subunit head. It is believed to interact with mRNA as it threads its way from the latch into the channel. Members of this family are mainly from archaea and contain only one canonical type II K-homology (KH) domain that has the signature motif GXXG (where X represents any amino acid).


Pssm-ID: 411782  Cd Length: 87  Bit Score: 73.01  E-value: 5.91e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100   6 SKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVE 85
Cdd:cd02411     1 AIEKKFIEEGLKRMKIDEYLAKELERAGYGGMELKKTPLGTKVIIYAERPGMVIGRGGRNIRRLTEILEEEFGLENPQIE 80
KH_2 pfam07650
KH domain;
20-96 1.82e-13

KH domain;


Pssm-ID: 429574 [Multi-domain]  Cd Length: 78  Bit Score: 63.73  E-value: 1.82e-13
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1995101100  20 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENS-VELYAEKVNNRGL 96
Cdd:pfam07650   1 EIPYSLAVELKFAGVSKVEIERTPNAVIVVIRASQPGIVIGKGGSRIKKIGKELRKDIEKLLGKkVYLNIVKVKKPWL 78
rps3 CHL00048
ribosomal protein S3
47-191 4.86e-08

ribosomal protein S3


Pssm-ID: 214348 [Multi-domain]  Cd Length: 214  Bit Score: 51.75  E-value: 4.86e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100  47 EIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFV 126
Cdd:CHL00048   69 QVIIYTGFPKLLIERKGRGIEELQINLQKELNSVNRKLNINITEVKKPYGEPNILAEYIAGQLENRVSFRKAMKKAIELA 148
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1995101100 127 MESGAKGCEVIVSGKLR-AQRAKSMKFKDGYmiSSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLD 191
Cdd:CHL00048  149 EKADIKGIKIQISGRLNgAEIARVEWIREGR--VPLQTLRAKIDYCSYPARTIYGVLGIKIWIFKD 212
KH-II_SF cd02409
type II K-homology (KH) RNA-binding domain superfamily; The K-homology (KH) domain binds ...
22-81 3.85e-05

type II K-homology (KH) RNA-binding domain superfamily; The K-homology (KH) domain binds single-stranded RNA or DNA, and is found in a wide variety of proteins including ribosomal proteins, transcription factors, and post-transcriptional modifiers of mRNA. There are two different KH domains that belong to different protein folds, but share a single "minimal KH motif" which is folded into a beta-alpha-alpha-beta unit. In addition to the core, type II KH domains (e.g. ribosomal protein S3) include an N-terminal extension while type I KH domains (e.g. hnRNP K) contain a C-terminal extension, connected to the KH motif by variable loops that are different in different KH domains, whether they are type I or type II. KH-II superfamily members contain one or two KH domains, most of which are canonical type II KH domains that have the signature motif GXXG (where X represents any amino acid). The first KH domain found in archaeal cleavage and polyadenylation specificity factors (CPSFs) is a non-canonical type II KH domain that lacks the GXXG motif. Some others have mutated GXXG motifs which may or may not have nucleic acid binding ability.


Pssm-ID: 411780 [Multi-domain]  Cd Length: 67  Bit Score: 40.44  E-value: 3.85e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1995101100  22 NEVLTRELA-EDGYSGVEVRVTPMRTEIIIRATR--TQAVLGEKGRRIRELTSVVQKRFKFPE 81
Cdd:cd02409     1 AEILEKLFPaAVTISDVEVEETPDGIRVIIAVEEgdPGIVIGKGGQRIRELRKELGKLGGGVE 63
RpsC COG0092
Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S3 ...
23-142 1.10e-03

Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S3 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439862 [Multi-domain]  Cd Length: 226  Bit Score: 38.92  E-value: 1.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1995101100  23 EVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPensVELYAEKVNNRGLCAIAQA 102
Cdd:COG0092    41 KYLKKKLKNAGISKIEIERTANRVRVTIHTARPGIVIGKKGAEIEKLRKELEKLTGKE---VQINIVEVKKPELDAQLVA 117
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1995101100 103 ESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKL 142
Cdd:COG0092   118 ENIAQQLERRVSFRRAMKRAIQRAMRAGAKGIKIQVSGRL 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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