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Conserved domains on  [gi|357136209|ref|XP_003569698|]
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uncharacterized protein LOC100827781 [Brachypodium distachyon]

Protein Classification

NuoB/complex I 20 kDa subunit family protein( domain architecture ID 10012723)

NuoB/complex I 20 kDa subunit family protein such as bacterial NADH-quinone oxidoreductase subunit B (NuoB) and mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, which are both part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

CATH:  3.40.50.12280
EC:  1.6.5.9
Gene Ontology:  GO:0051539|GO:0008137|GO:0045271|GO:0048038|GO:0016655|GO:0005886
PubMed:  30277212|1470679|33957129|23417064|24059520
SCOP:  4007641

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
50-198 3.94e-110

NADH-quinone oxidoreductase subunit NuoB;


:

Pssm-ID: 235797  Cd Length: 183  Bit Score: 312.68  E-value: 3.94e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  50 FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM 129
Cdd:PRK06411  20 VVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQM 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357136209 130 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHW 198
Cdd:PRK06411 100 PEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKR 168
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
50-198 3.94e-110

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 312.68  E-value: 3.94e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  50 FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM 129
Cdd:PRK06411  20 VVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQM 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357136209 130 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHW 198
Cdd:PRK06411 100 PEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKR 168
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 50-192 3.49e-104

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 296.19  E-value: 3.49e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209   50 FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFG-VIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQ 128
Cdd:TIGR01957   2 VLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQ 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 357136209  129 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRR 192
Cdd:TIGR01957  82 MPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 52-201 7.25e-104

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 295.55  E-value: 7.25e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  52 VSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP 130
Cdd:COG0377    1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357136209 131 EPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHWWTK 201
Cdd:COG0377   81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYG 151
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
77-185 1.88e-33

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 115.76  E-value: 1.88e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209   77 CAVEMMHAGAARYDF-----DRFGVIFRPSPR----QSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGY 147
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 357136209  148 YH----YSYSvVRGCDRIVPVDIYVPGCPPTAEALLYGVLQL 185
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
50-198 3.94e-110

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 312.68  E-value: 3.94e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  50 FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM 129
Cdd:PRK06411  20 VVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQM 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357136209 130 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHW 198
Cdd:PRK06411 100 PEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKR 168
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 50-192 3.49e-104

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 296.19  E-value: 3.49e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209   50 FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFG-VIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQ 128
Cdd:TIGR01957   2 VLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQ 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 357136209  129 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRR 192
Cdd:TIGR01957  82 MPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 52-201 7.25e-104

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 295.55  E-value: 7.25e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  52 VSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP 130
Cdd:COG0377    1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 357136209 131 EPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHWWTK 201
Cdd:COG0377   81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYG 151
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
55-193 1.25e-69

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 212.92  E-value: 1.25e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  55 VDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPR 133
Cdd:PRK14819  21 VNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAeLFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPR 100

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209 134 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRK 193
Cdd:PRK14819 101 YVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQS 160
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 41-189 1.40e-68

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 207.11  E-value: 1.40e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  41 PAAGSKAAEFVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAP 120
Cdd:PRK14818   7 PGIGGDVTLLHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAE 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357136209 121 ALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 189
Cdd:PRK14818  87 RARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIV 155
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 49-195 2.55e-67

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 204.37  E-value: 2.55e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  49 EFVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 127
Cdd:PRK14815  17 NVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAeVMRFSPRQADVMIVAGTVTYKMALAVRRIYD 96

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 357136209 128 QMPEPRWVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDF 195
Cdd:PRK14815  97 QMPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTERAA 163
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 51-189 1.12e-66

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 202.81  E-value: 1.12e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  51 VVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP 130
Cdd:PRK14813  14 LVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRLYEQMP 93

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209 131 EPRWVISMGSCANGGG-YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 189
Cdd:PRK14813  94 EPRYVLSMGSCSNCGGpYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELI 153
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
48-195 5.46e-66

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 200.91  E-value: 5.46e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  48 AEFVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALRKVY 126
Cdd:PRK14816  24 ANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFeVARASPRQADMIMVCGTITNKMAPVLKRLY 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 357136209 127 DQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDF 195
Cdd:PRK14816 104 DQMADPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEKFF 172
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
45-191 1.90e-62

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 206.55  E-value: 1.90e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  45 SKAAEFVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALR 123
Cdd:PRK13292   2 TIPENILLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAeVLRGTPREADLMVIAGTVFKKMAPSIL 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 357136209 124 KVYDQMPEPRWVISMGSCANGGGYYHYsYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINR 191
Cdd:PRK13292  82 RLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRR 148
ndhK CHL00023
NADH dehydrogenase subunit K
 57-191 1.35e-60

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 188.38  E-value: 1.35e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  57 DLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 136
Cdd:CHL00023  24 DLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 103

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 357136209 137 SMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINR 191
Cdd:CHL00023 104 AMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 159
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
38-192 4.35e-55

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 173.09  E-value: 4.35e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  38 VPPPAaGSKAAEFVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIfRPS--PRQSDCMIVAGTLT 115
Cdd:PRK14820   7 VEAPE-GYEGEGFFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSE-RPSfsPRQADMLMVMGTIA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209 116 NKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQ-----KKIN 190
Cdd:PRK14820  85 KKMAPVLKQVYLQMAEPRWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQelvknESLR 163


                 ..
gi 357136209 191 RR 192
Cdd:PRK14820 164 RR 165
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 50-189 6.58e-54

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 170.21  E-value: 6.58e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  50 FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIfRPS--PRQSDCMIVAGTLTNKMAPALRKVYD 127
Cdd:PRK14814  18 FQLGNLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAE-RPSfsPRQADMILVLGTITYKMAPVLRQIYD 96

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 357136209 128 QMPEPRWVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 189
Cdd:PRK14814  97 QMAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKL 157
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
46-189 2.40e-52

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 166.29  E-value: 2.40e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  46 KAAEFVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIF-RPSPRQSDCMIVAGTLTNKMAPALRK 124
Cdd:PRK14817  16 EAEGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMpRFSPRQADLLMVVGTVNCKQAPILQR 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 357136209 125 VYDQMPEPRWVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 189
Cdd:PRK14817  96 VYEQMADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKI 159
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
61-193 3.01e-50

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 159.18  E-value: 3.01e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  61 WARRGSIWPMTF--GlAC--CAVEMMHAGAARYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 136
Cdd:COG3260    1 KVLGRSLWIRHVdaG-SCngCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVV 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 357136209 137 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRK 193
Cdd:COG3260   80 AVGDCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKL 136
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
77-185 1.88e-33

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 115.76  E-value: 1.88e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209   77 CAVEMMHAGAARYDF-----DRFGVIFRPSPR----QSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGY 147
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 357136209  148 YH----YSYSvVRGCDRIVPVDIYVPGCPPTAEALLYGVLQL 185
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
71-180 5.15e-06

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 45.69  E-value: 5.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 357136209  71 TFGLACC-----AVEMMHAG----AARYDFDRFGVI--FRPSPRQSDCMIVAGTLTNK----MAPALRKVYDQmpeprwV 135
Cdd:COG1941    8 TYWLAGCsgcqlSFLDLDERlldlLELVEIVYFPEAsdVKEIPEPVDVALVEGSIRNEeneeRLKEIREKSKI------L 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 357136209 136 ISMGSCANGGG----------------YYHYSYSV---------------VRGCDRIVPVDIYVPGCPPTAEALLY 180
Cdd:COG1941   82 VALGACAVTGGipalrnlydleellerVYGETPSTnpqipgeelpelldrVRPLSEVVKVDYELPGCPPDPDQILE 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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