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Conserved domains on  [gi|356567478|ref|XP_003551946|]
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protein transport protein SEC23 [Glycine max]

Protein Classification

protein transport protein sec23( domain architecture ID 1004043)

protein transport protein sec23 is a component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER)

CATH:  1.20.120.730
Gene Ontology:  GO:0006886|GO:0008270|GO:0005096
PubMed:  8898360|18534853

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN00162 super family cl33419
transport protein sec23; Provisional
1-730 0e+00

transport protein sec23; Provisional


The actual alignment was detected with superfamily member PLN00162:

Pssm-ID: 215083 [Multi-domain]  Cd Length: 761  Bit Score: 1118.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478   1 MDLVELEAVEGLRWAWNSW---AADGTNMIIPLSIMCTPLMLLnSEVPLLPYDPLLCSRCGAVLNPYARLDYQSRIWHCP 77
Cdd:PLN00162   1 MDFAELEAIDGVRMSWNVWpssKIEASKCVIPLAALYTPLKPL-PELPVLPYDPLRCRTCRAVLNPYCRVDFQAKIWICP 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  78 FCSLRNPFPR---PIADTNLPAELFPTYSTVEYSSPSPSPPPPPP-AFVFLLDLSTPQDELPPLKNQLLHLLHHLPDHSL 153
Cdd:PLN00162  80 FCFQRNHFPPhysSISETNLPAELFPQYTTVEYTLPPGSGGAPSPpVFVFVVDTCMIEEELGALKSALLQAIALLPENAL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 154 VSLITFDSMVYLHHLSSSHFSSLLVFHGNRHLSSNQIRHFLN----PHRHQA-----------------FLLPISECQFS 212
Cdd:PLN00162 160 VGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILEQLGlggkKRRPAGggiagardglsssgvnrFLLPASECEFT 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 213 ITTAIEEIHSTSNSTISASRPPRCTGSAISVALGLLESCPINTGSRILVFTSGPATLGPGIVVDSDRRQPIRTHHHIFNA 292
Cdd:PLN00162 240 LNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKD 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 293 QATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLSESFDSDQFKNCLRQMFRCDDQGHLR 372
Cdd:PLN00162 320 AAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGSLG 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 373 MNFDATIEIVTTKDVKICGALGPCVSLERNNCLVSEAEVGEGGTSVWKLNTLTHKTCIAFFFQV-NQEQKMKIQPGSAFL 451
Cdd:PLN00162 400 LSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVaNSGQSNPQPPGQQFF 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 452 IQFITRYRQGNM-IRKRVTTAARRWVA-SHSADIGAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGD 529
Cdd:PLN00162 480 LQFLTRYQHSNGqTRLRVTTVTRRWVEgSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLDRALIRLCSKFGD 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 530 YVPEDPSSFRLSSNFSLYPQFMYHLRRSQFIDVSNTTPDETAFFRLVLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDI 609
Cdd:PLN00162 560 YRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFNGPPEPVLLDV 639
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 610 RSISPDFILLFDSFFCVVIHYGSKIAQWRKLGYDKDPNHESLRKLLEAPELDAEQLVADRLPVPRIIRCDQHSSQARFLL 689
Cdd:PLN00162 640 ASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHGSQARFLL 719
                        730       740       750       760
                 ....*....|....*....|....*....|....*....|..
gi 356567478 690 AKLNPSVTQNSTYT-EGSDIIFTDDLSLEVFLDQLQVLAVQS 730
Cdd:PLN00162 720 AKLNPSATYNSANAmGGSDIIFTDDVSLQVFMEHLQRLAVQS 761
 
Name Accession Description Interval E-value
PLN00162 PLN00162
transport protein sec23; Provisional
1-730 0e+00

transport protein sec23; Provisional


Pssm-ID: 215083 [Multi-domain]  Cd Length: 761  Bit Score: 1118.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478   1 MDLVELEAVEGLRWAWNSW---AADGTNMIIPLSIMCTPLMLLnSEVPLLPYDPLLCSRCGAVLNPYARLDYQSRIWHCP 77
Cdd:PLN00162   1 MDFAELEAIDGVRMSWNVWpssKIEASKCVIPLAALYTPLKPL-PELPVLPYDPLRCRTCRAVLNPYCRVDFQAKIWICP 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  78 FCSLRNPFPR---PIADTNLPAELFPTYSTVEYSSPSPSPPPPPP-AFVFLLDLSTPQDELPPLKNQLLHLLHHLPDHSL 153
Cdd:PLN00162  80 FCFQRNHFPPhysSISETNLPAELFPQYTTVEYTLPPGSGGAPSPpVFVFVVDTCMIEEELGALKSALLQAIALLPENAL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 154 VSLITFDSMVYLHHLSSSHFSSLLVFHGNRHLSSNQIRHFLN----PHRHQA-----------------FLLPISECQFS 212
Cdd:PLN00162 160 VGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILEQLGlggkKRRPAGggiagardglsssgvnrFLLPASECEFT 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 213 ITTAIEEIHSTSNSTISASRPPRCTGSAISVALGLLESCPINTGSRILVFTSGPATLGPGIVVDSDRRQPIRTHHHIFNA 292
Cdd:PLN00162 240 LNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKD 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 293 QATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLSESFDSDQFKNCLRQMFRCDDQGHLR 372
Cdd:PLN00162 320 AAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGSLG 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 373 MNFDATIEIVTTKDVKICGALGPCVSLERNNCLVSEAEVGEGGTSVWKLNTLTHKTCIAFFFQV-NQEQKMKIQPGSAFL 451
Cdd:PLN00162 400 LSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVaNSGQSNPQPPGQQFF 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 452 IQFITRYRQGNM-IRKRVTTAARRWVA-SHSADIGAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGD 529
Cdd:PLN00162 480 LQFLTRYQHSNGqTRLRVTTVTRRWVEgSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLDRALIRLCSKFGD 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 530 YVPEDPSSFRLSSNFSLYPQFMYHLRRSQFIDVSNTTPDETAFFRLVLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDI 609
Cdd:PLN00162 560 YRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFNGPPEPVLLDV 639
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 610 RSISPDFILLFDSFFCVVIHYGSKIAQWRKLGYDKDPNHESLRKLLEAPELDAEQLVADRLPVPRIIRCDQHSSQARFLL 689
Cdd:PLN00162 640 ASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHGSQARFLL 719
                        730       740       750       760
                 ....*....|....*....|....*....|....*....|..
gi 356567478 690 AKLNPSVTQNSTYT-EGSDIIFTDDLSLEVFLDQLQVLAVQS 730
Cdd:PLN00162 720 AKLNPSATYNSANAmGGSDIIFTDDVSLQVFMEHLQRLAVQS 761
SEC23 COG5047
Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion];
1-728 0e+00

Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion];


Pssm-ID: 227380 [Multi-domain]  Cd Length: 755  Bit Score: 638.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478   1 MDLVELEAVEGLRWAWNSWAA---DGTNMIIPLSIMCTPLMLlNSEVPLLPYDPLLC-SRCGAVLNPYARLDYQSRIWHC 76
Cdd:COG5047    1 MNFEIIEENDGIRLTWNVFPAtrgDATRTVIPIACLYTPLHE-DDALTVNYYEPVKCtAPCKAVLNPYCHIDERNQSWIC 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  77 PFCSLRNPFP---RPIADTNLPAELFPTYSTVEYSSPSPSPPPPPpaFVFLLDLSTPQDELPPLKNQLLHLLHHLPDHSL 153
Cdd:COG5047   80 PFCNQRNTLPpqyRDISNANLPLELLPQSSTIEYTLSKPVILPPV--FFFVVDACCDEEELTALKDSLIVSLSLLPPEAL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 154 VSLITFDSMVYLHHLSSSHFSSLLVFHGNRHLSSNQIRHFL---NPHRHQA---------------FLLPISECQFSITT 215
Cdd:COG5047  158 VGLITYGTSIQVHELNAENHRRSYVFSGNKEYTKENLQELLalsKPTKSGGfeskisgigqfassrFLLPTQQCEFKLLN 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 216 AIEEIHSTSNSTISASRPPRCTGSAISVALGLLESCPINTGSRILVFTSGPATLGPGIVVDSDRRQPIRTHHHIFNAQAT 295
Cdd:COG5047  238 ILEQLQPDPWPVPAGKRPLRCTGSALNIASSLLEQCFPNAGCHIVLFAGGPCTVGPGTVVSTELKEPMRSHHDIESDSAQ 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 296 HYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLSESFDSDQFKNCLRQMFRCDDQGHLRMNF 375
Cdd:COG5047  318 HSKKATKFYKGLAERVANQGHALDIFAGCLDQIGIMEMEPLTTSTGGALVLSDSFTTSIFKQSFQRIFNRDSEGYLKMGF 397
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 376 DATIEIVTTKDVKICGALGPCVSLERNNCLVSEAEVGEGGTSVWKLNTLTHKTCIAFFFQVNQEQKMKIQPGSAF-LIQF 454
Cdd:COG5047  398 NANMEVKTSKNLKIKGLIGHAVSVKKKANNISDSEIGIGATNSWKMASLSPKSNYALYFEIALGAASGSAQRPAEaYIQF 477
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 455 ITRY-RQGNMIRKRVTTAARRWVASHSADIGAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGDYVPE 533
Cdd:COG5047  478 ITTYqHSSGTYRIRVTTVARMFTDGGLPKINRSFDQEAAAVFMARIAAFKAETEDIIDVFRWIDRNLIRLCQKFADYRKD 557
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 534 DPSSFRLSSNFSLYPQFMYHLRRSQFIDVSNTTPDETAFFRLVLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSIS 613
Cdd:COG5047  558 DPSSFRLDPNFTLYPQFMYHLRRSPFLSVFNNSPDETAFYRHMLNNADVNDSLIMIQPTLQSYSFEKGGVPVLLDSVSVK 637
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 614 PDFILLFDSFFCVVIHYGSKIAQWRKLGYDKDPNHESLRKLLEAPELDAEQLVADRLPVPRIIRCDQHSSQARFLLAKLN 693
Cdd:COG5047  638 PDVILLLDTFFHILIFHGSYIAQWRNAGYQEQPEYLNLKELLEAPRLEAAELLQDRFPIPRFIVTEQGGSQARFLLSKIN 717
                        730       740       750
                 ....*....|....*....|....*....|....*
gi 356567478 694 PSVTQNSTYTEGSDIIFTDDLSLEVFLDQLQVLAV 728
Cdd:COG5047  718 PSDITNKMSGGGSETILTDDVNLQKFMNHLRKLAV 752
Sec23-like cd01478
Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the ...
121-356 1.68e-65

Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24 polypeptides fold into five distinct domains: a beta-barrel, a zinc finger, a vWA or trunk, an all helical region and a carboxy Gelsolin domain. The members of this subgroup lack the consensus MIDAS motif but have the overall Para-Rossmann type fold that is characteristic of this superfamily.


Pssm-ID: 238755 [Multi-domain]  Cd Length: 267  Bit Score: 218.01  E-value: 1.68e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 121 FVFLLDLSTPQDELPPLKNQLLHLLHHLPDHSLVSLITFDSMVYLHHLSSSHFSSLLVFHGNRHLSSNQIRHFL------ 194
Cdd:cd01478    6 FLFVVDTCMDEEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQIQDMLglggpa 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 195 ------------NPHRHQA---FLLPISECQFSITTAIEEIHSTSNSTISASRPPRCTGSAISVALGLLESCPINTGSRI 259
Cdd:cd01478   86 mrpsasqhpgagNPLPSAAasrFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACFPNTGARI 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 260 LVFTSGPATLGPGIVVDSDRRQPIRTHHHIFNAQATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEH 339
Cdd:cd01478  166 MLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQVGLLEMKVLVNS 245
                        250
                 ....*....|....*..
gi 356567478 340 SGGFIVLSESFDSDQFK 356
Cdd:cd01478  246 TGGHVVLSDSFTTSIFK 262
Sec23_trunk pfam04811
Sec23/Sec24 trunk domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum ...
120-363 6.09e-43

Sec23/Sec24 trunk domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface.


Pssm-ID: 398467 [Multi-domain]  Cd Length: 241  Bit Score: 155.49  E-value: 6.09e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  120 AFVFLLDLS---TPQDELPPLKNQLLHLLHHLP--DHSLVSLITFDSMVYlhhlssshfssllvFH-------GNRHLSS 187
Cdd:pfam04811   5 VFLFVIDVSynaIKSGLLAALKESLLQSLDLLPgdPRARVGFITFDSTVH--------------FFnlgsslrQPQMLVV 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  188 NQIRHFLNPhRHQAFLLPISECQFSITTAIEEIHSTSNSTisaSRPPRCTGSAISVALGLLESCPinTGSRILVFTSGPA 267
Cdd:pfam04811  71 SDLQDMFLP-LPDRFLVPLSECRFVLEDLLEQLPPMFPVT---KRPERCLGPALQAAFLLLKAAF--TGGKIMVFQGGLP 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  268 TLGPGIVVDSDRRqpiRTHHHIFNAQATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLS 347
Cdd:pfam04811 145 TVGPGGKLKSRLD---ESHHGTDKEKAKLVKKADKFYKSLAKECVKQGHSVDLFAFSLDYVDVATLGQLSRLTGGQVYLY 221
                         250       260
                  ....*....|....*....|
gi 356567478  348 ESF----DSDQFKNCLRQMF 363
Cdd:pfam04811 222 PSFqadvDGSKFKQDLQRYF 241
 
Name Accession Description Interval E-value
PLN00162 PLN00162
transport protein sec23; Provisional
1-730 0e+00

transport protein sec23; Provisional


Pssm-ID: 215083 [Multi-domain]  Cd Length: 761  Bit Score: 1118.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478   1 MDLVELEAVEGLRWAWNSW---AADGTNMIIPLSIMCTPLMLLnSEVPLLPYDPLLCSRCGAVLNPYARLDYQSRIWHCP 77
Cdd:PLN00162   1 MDFAELEAIDGVRMSWNVWpssKIEASKCVIPLAALYTPLKPL-PELPVLPYDPLRCRTCRAVLNPYCRVDFQAKIWICP 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  78 FCSLRNPFPR---PIADTNLPAELFPTYSTVEYSSPSPSPPPPPP-AFVFLLDLSTPQDELPPLKNQLLHLLHHLPDHSL 153
Cdd:PLN00162  80 FCFQRNHFPPhysSISETNLPAELFPQYTTVEYTLPPGSGGAPSPpVFVFVVDTCMIEEELGALKSALLQAIALLPENAL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 154 VSLITFDSMVYLHHLSSSHFSSLLVFHGNRHLSSNQIRHFLN----PHRHQA-----------------FLLPISECQFS 212
Cdd:PLN00162 160 VGLITFGTHVHVHELGFSECSKSYVFRGNKEVSKDQILEQLGlggkKRRPAGggiagardglsssgvnrFLLPASECEFT 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 213 ITTAIEEIHSTSNSTISASRPPRCTGSAISVALGLLESCPINTGSRILVFTSGPATLGPGIVVDSDRRQPIRTHHHIFNA 292
Cdd:PLN00162 240 LNSALEELQKDPWPVPPGHRPARCTGAALSVAAGLLGACVPGTGARIMAFVGGPCTEGPGAIVSKDLSEPIRSHKDLDKD 319
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 293 QATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLSESFDSDQFKNCLRQMFRCDDQGHLR 372
Cdd:PLN00162 320 AAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSLRRVFERDGEGSLG 399
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 373 MNFDATIEIVTTKDVKICGALGPCVSLERNNCLVSEAEVGEGGTSVWKLNTLTHKTCIAFFFQV-NQEQKMKIQPGSAFL 451
Cdd:PLN00162 400 LSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVaNSGQSNPQPPGQQFF 479
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 452 IQFITRYRQGNM-IRKRVTTAARRWVA-SHSADIGAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGD 529
Cdd:PLN00162 480 LQFLTRYQHSNGqTRLRVTTVTRRWVEgSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLDRALIRLCSKFGD 559
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 530 YVPEDPSSFRLSSNFSLYPQFMYHLRRSQFIDVSNTTPDETAFFRLVLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDI 609
Cdd:PLN00162 560 YRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFNGPPEPVLLDV 639
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 610 RSISPDFILLFDSFFCVVIHYGSKIAQWRKLGYDKDPNHESLRKLLEAPELDAEQLVADRLPVPRIIRCDQHSSQARFLL 689
Cdd:PLN00162 640 ASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHGSQARFLL 719
                        730       740       750       760
                 ....*....|....*....|....*....|....*....|..
gi 356567478 690 AKLNPSVTQNSTYT-EGSDIIFTDDLSLEVFLDQLQVLAVQS 730
Cdd:PLN00162 720 AKLNPSATYNSANAmGGSDIIFTDDVSLQVFMEHLQRLAVQS 761
SEC23 COG5047
Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion];
1-728 0e+00

Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion];


Pssm-ID: 227380 [Multi-domain]  Cd Length: 755  Bit Score: 638.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478   1 MDLVELEAVEGLRWAWNSWAA---DGTNMIIPLSIMCTPLMLlNSEVPLLPYDPLLC-SRCGAVLNPYARLDYQSRIWHC 76
Cdd:COG5047    1 MNFEIIEENDGIRLTWNVFPAtrgDATRTVIPIACLYTPLHE-DDALTVNYYEPVKCtAPCKAVLNPYCHIDERNQSWIC 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  77 PFCSLRNPFP---RPIADTNLPAELFPTYSTVEYSSPSPSPPPPPpaFVFLLDLSTPQDELPPLKNQLLHLLHHLPDHSL 153
Cdd:COG5047   80 PFCNQRNTLPpqyRDISNANLPLELLPQSSTIEYTLSKPVILPPV--FFFVVDACCDEEELTALKDSLIVSLSLLPPEAL 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 154 VSLITFDSMVYLHHLSSSHFSSLLVFHGNRHLSSNQIRHFL---NPHRHQA---------------FLLPISECQFSITT 215
Cdd:COG5047  158 VGLITYGTSIQVHELNAENHRRSYVFSGNKEYTKENLQELLalsKPTKSGGfeskisgigqfassrFLLPTQQCEFKLLN 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 216 AIEEIHSTSNSTISASRPPRCTGSAISVALGLLESCPINTGSRILVFTSGPATLGPGIVVDSDRRQPIRTHHHIFNAQAT 295
Cdd:COG5047  238 ILEQLQPDPWPVPAGKRPLRCTGSALNIASSLLEQCFPNAGCHIVLFAGGPCTVGPGTVVSTELKEPMRSHHDIESDSAQ 317
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 296 HYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLSESFDSDQFKNCLRQMFRCDDQGHLRMNF 375
Cdd:COG5047  318 HSKKATKFYKGLAERVANQGHALDIFAGCLDQIGIMEMEPLTTSTGGALVLSDSFTTSIFKQSFQRIFNRDSEGYLKMGF 397
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 376 DATIEIVTTKDVKICGALGPCVSLERNNCLVSEAEVGEGGTSVWKLNTLTHKTCIAFFFQVNQEQKMKIQPGSAF-LIQF 454
Cdd:COG5047  398 NANMEVKTSKNLKIKGLIGHAVSVKKKANNISDSEIGIGATNSWKMASLSPKSNYALYFEIALGAASGSAQRPAEaYIQF 477
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 455 ITRY-RQGNMIRKRVTTAARRWVASHSADIGAGFDQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGDYVPE 533
Cdd:COG5047  478 ITTYqHSSGTYRIRVTTVARMFTDGGLPKINRSFDQEAAAVFMARIAAFKAETEDIIDVFRWIDRNLIRLCQKFADYRKD 557
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 534 DPSSFRLSSNFSLYPQFMYHLRRSQFIDVSNTTPDETAFFRLVLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSIS 613
Cdd:COG5047  558 DPSSFRLDPNFTLYPQFMYHLRRSPFLSVFNNSPDETAFYRHMLNNADVNDSLIMIQPTLQSYSFEKGGVPVLLDSVSVK 637
                        650       660       670       680       690       700       710       720
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 614 PDFILLFDSFFCVVIHYGSKIAQWRKLGYDKDPNHESLRKLLEAPELDAEQLVADRLPVPRIIRCDQHSSQARFLLAKLN 693
Cdd:COG5047  638 PDVILLLDTFFHILIFHGSYIAQWRNAGYQEQPEYLNLKELLEAPRLEAAELLQDRFPIPRFIVTEQGGSQARFLLSKIN 717
                        730       740       750
                 ....*....|....*....|....*....|....*
gi 356567478 694 PSVTQNSTYTEGSDIIFTDDLSLEVFLDQLQVLAV 728
Cdd:COG5047  718 PSDITNKMSGGGSETILTDDVNLQKFMNHLRKLAV 752
Sec23-like cd01478
Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the ...
121-356 1.68e-65

Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24 polypeptides fold into five distinct domains: a beta-barrel, a zinc finger, a vWA or trunk, an all helical region and a carboxy Gelsolin domain. The members of this subgroup lack the consensus MIDAS motif but have the overall Para-Rossmann type fold that is characteristic of this superfamily.


Pssm-ID: 238755 [Multi-domain]  Cd Length: 267  Bit Score: 218.01  E-value: 1.68e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 121 FVFLLDLSTPQDELPPLKNQLLHLLHHLPDHSLVSLITFDSMVYLHHLSSSHFSSLLVFHGNRHLSSNQIRHFL------ 194
Cdd:cd01478    6 FLFVVDTCMDEEELDALKESLIMSLSLLPPNALVGLITFGTMVQVHELGFEECSKSYVFRGNKDYTAKQIQDMLglggpa 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 195 ------------NPHRHQA---FLLPISECQFSITTAIEEIHSTSNSTISASRPPRCTGSAISVALGLLESCPINTGSRI 259
Cdd:cd01478   86 mrpsasqhpgagNPLPSAAasrFLLPVSQCEFTLTDLLEQLQPDPWPVPAGHRPLRCTGVALSIAVGLLEACFPNTGARI 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 260 LVFTSGPATLGPGIVVDSDRRQPIRTHHHIFNAQATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEH 339
Cdd:cd01478  166 MLFAGGPCTVGPGAVVSTELKDPIRSHHDIDKDNAKYYKKAVKFYDSLAKRLAANGHAVDIFAGCLDQVGLLEMKVLVNS 245
                        250
                 ....*....|....*..
gi 356567478 340 SGGFIVLSESFDSDQFK 356
Cdd:cd01478  246 TGGHVVLSDSFTTSIFK 262
Sec23_C cd11287
C-terminal Actin depolymerization factor-homology domain of Sec23; The C-terminal domain of ...
580-700 4.30e-64

C-terminal Actin depolymerization factor-homology domain of Sec23; The C-terminal domain of the Sec23 subunit of the coat protein complex II (COPII) is distantly related to gelsolin-like repeats and the actin depolymerizing domains found in cofilin and similar proteins. Sec23 forms a tight complex with Sec24. The cytoplasmic Sec23/24 complex is recruited together with Sar1-GTP and Sec13/31 to induce coat polymerization and membrane deformation in the forming of COPII-coated endoplasmic reticulum vesicles. The function of the Sec23 C-terminal domain is unclear.


Pssm-ID: 200443 [Multi-domain]  Cd Length: 121  Bit Score: 208.77  E-value: 4.30e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 580 EGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSISPDFILLFDSFFCVVIHYGSKIAQWRKLGYDKDPNHESLRKLLEAPE 659
Cdd:cd11287    1 EDVSNSLIMIQPTLYSYSFNGPPEPVLLDSSSILPDRILLLDTFFHILIYHGETIAQWRKAGYQDQPEYENFKDLLEAPV 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 356567478 660 LDAEQLVADRLPVPRIIRCDQHSSQARFLLAKLNPSVTQNS 700
Cdd:cd11287   81 DDAQELLQDRFPMPRYIVTEQGGSQARFLLSKVNPSQTHNN 121
Sec23_trunk pfam04811
Sec23/Sec24 trunk domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum ...
120-363 6.09e-43

Sec23/Sec24 trunk domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface.


Pssm-ID: 398467 [Multi-domain]  Cd Length: 241  Bit Score: 155.49  E-value: 6.09e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  120 AFVFLLDLS---TPQDELPPLKNQLLHLLHHLP--DHSLVSLITFDSMVYlhhlssshfssllvFH-------GNRHLSS 187
Cdd:pfam04811   5 VFLFVIDVSynaIKSGLLAALKESLLQSLDLLPgdPRARVGFITFDSTVH--------------FFnlgsslrQPQMLVV 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  188 NQIRHFLNPhRHQAFLLPISECQFSITTAIEEIHSTSNSTisaSRPPRCTGSAISVALGLLESCPinTGSRILVFTSGPA 267
Cdd:pfam04811  71 SDLQDMFLP-LPDRFLVPLSECRFVLEDLLEQLPPMFPVT---KRPERCLGPALQAAFLLLKAAF--TGGKIMVFQGGLP 144
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  268 TLGPGIVVDSDRRqpiRTHHHIFNAQATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLS 347
Cdd:pfam04811 145 TVGPGGKLKSRLD---ESHHGTDKEKAKLVKKADKFYKSLAKECVKQGHSVDLFAFSLDYVDVATLGQLSRLTGGQVYLY 221
                         250       260
                  ....*....|....*....|
gi 356567478  348 ESF----DSDQFKNCLRQMF 363
Cdd:pfam04811 222 PSFqadvDGSKFKQDLQRYF 241
trunk_domain cd01468
trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi ...
120-359 2.16e-40

trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.


Pssm-ID: 238745 [Multi-domain]  Cd Length: 239  Bit Score: 148.16  E-value: 2.16e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 120 AFVFLLDLS---TPQDELPPLKNQLLHLLHHLPD--HSLVSLITFDSMV-YLHHLSSSHFSSLLVFHGNRHLSsnqirhf 193
Cdd:cd01468    5 VFVFVIDVSyeaIKEGLLQALKESLLASLDLLPGdpRARVGLITYDSTVhFYNLSSDLAQPKMYVVSDLKDVF------- 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 194 lnPHRHQAFLLPISECQFSITTAIEEIhSTSNSTISASRPPRCTGSAISVALGLLESCpiNTGSRILVFTSGPATLGPGI 273
Cdd:cd01468   78 --LPLPDRFLVPLSECKKVIHDLLEQL-PPMFWPVPTHRPERCLGPALQAAFLLLKGT--FAGGRIIVFQGGLPTVGPGK 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 274 VVDSDRRQPIRTHhhifnAQATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGGFIVLSESF--- 350
Cdd:cd01468  153 LKSREDKEPIRSH-----DEAQLLKPATKFYKSLAKECVKSGICVDLFAFSLDYVDVATLKQLAKSTGGQVYLYDSFqap 227
                        250
                 ....*....|
gi 356567478 351 -DSDQFKNCL 359
Cdd:cd01468  228 nDGSKFKQDL 237
Sec23_helical pfam04815
Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic ...
488-587 6.18e-20

Sec23/Sec24 helical domain; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is composed of five alpha helices.


Pssm-ID: 461441 [Multi-domain]  Cd Length: 103  Bit Score: 85.25  E-value: 6.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  488 DQEAAAAVMARLAILRAETCHARDVIRWLDDTLIRFTSKFGDYVPE--DPSSFRLSSNFSLYPQFMYHLRRSQ-FIDVSN 564
Cdd:pfam04815   1 DQEAIAVLLAKKAVEKALSSSLSDAREALDNKLVDILAAYRKYCASssSPGQLILPESLKLLPLYMLALLKSPaLRGGNS 80
                          90       100
                  ....*....|....*....|...
gi 356567478  565 TTPDETAFFRLVLNREGVVGSLI 587
Cdd:pfam04815  81 SPSDERAYARHLLLSLPVEELLL 103
Sec23_BS pfam08033
Sec23/Sec24 beta-sandwich domain;
375-476 1.24e-15

Sec23/Sec24 beta-sandwich domain;


Pssm-ID: 429794 [Multi-domain]  Cd Length: 86  Bit Score: 72.57  E-value: 1.24e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  375 FDATIEIVTTKDVKICGALGPCVSleRNNclvseaevgeGGTsvWKLNTLTHKTCIAFFFQVNQeqkmKIQPGSAFLIQF 454
Cdd:pfam08033   2 FNAVLRVRTSKGLKVSGFIGNFVS--RSS----------GDT--WKLPSLDPDTSYAFEFDIDE----PLPNGSNAYIQF 63
                          90       100
                  ....*....|....*....|...
gi 356567478  455 ITRYRQGNMIRK-RVTTAARRWV 476
Cdd:pfam08033  64 ALLYTHSSGERRiRVTTVALPVT 86
zf-Sec23_Sec24 pfam04810
Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum ...
51-86 2.00e-14

Sec23/Sec24 zinc finger; COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain.


Pssm-ID: 461437 [Multi-domain]  Cd Length: 38  Bit Score: 67.47  E-value: 2.00e-14
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 356567478   51 PLLCSRCGAVLNPYARLDYQSRIWHCPFCSLRNPFP 86
Cdd:pfam04810   1 PVRCRRCRAYLNPFCQFDFGGKKWTCNFCGTRNPVP 36
COG5028 COG5028
Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking ...
28-357 1.93e-13

Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion];


Pssm-ID: 227361 [Multi-domain]  Cd Length: 861  Bit Score: 74.06  E-value: 1.93e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  28 IPLSIMCTPLMLLNSEVPLLPYD----PLLCSRCGAVLNPYARLDYQSRIWHCPFCSLRNPFPR----------PIADTN 93
Cdd:COG5028  172 IPFGLVIRPFLELYPEEDPVPLVedgsIVRCRRCRSYINPFVQFIEQGRKWRCNICRSKNDVPEgfdnpsgpndPRSDRY 251
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  94 LPAELfpTYSTVEYSSPSPSPPPPP--PAFVFLLDLSTPQDELPPLK---NQLLHLLHHLPDHSL---VSLITFDSMVYL 165
Cdd:COG5028  252 SRPEL--KSGVVDFLAPKEYSLRQPppPVYVFLIDVSFEAIKNGLVKaaiRAILENLDQIPNFDPrtkIAIICFDSSLHF 329
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 166 HHLSSShfssllvFHGNRHLSSNQIRHFLnPHRHQAFLLPISECQFSITTAIEEIHSTSNSTISasrPPRCTGSAISVAL 245
Cdd:COG5028  330 FKLSPD-------LDEQMLIVSDLDEPFL-PFPSGLFVLPLKSCKQIIETLLDRVPRIFQDNKS---PKNALGPALKAAK 398
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 246 GLLESCpintGSRILVFTSGPATLGPGIVvdSDRRQPIRTHHHIfnaqathyakSSAFYNQLSKRLSGASVVLDLFACSL 325
Cdd:COG5028  399 SLIGGT----GGKIIVFLSTLPNMGIGKL--QLREDKESSLLSC----------KDSFYKEFAIECSKVGISVDLFLTSE 462
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 356567478 326 DQVGAAELRGPVEHSGGFI------VLSESFDSDQFKN 357
Cdd:COG5028  463 DYIDVATLSHLCRYTGGQTyfypnfSATRPNDATKLAN 500
Gelsolin pfam00626
Gelsolin repeat;
602-688 4.35e-09

Gelsolin repeat;


Pssm-ID: 395501 [Multi-domain]  Cd Length: 76  Bit Score: 53.47  E-value: 4.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478  602 PVPVLLDIRSISPDFILLFDsffcvvihYGSKIAQWRklGYDKDPNhESLRKLLEAPELDAEqlvaDRLPVPRIIRCDQH 681
Cdd:pfam00626   5 PPPVPLSQESLNSGDCYLLD--------NGFTIFLWV--GKGSSLL-EKLFAALLAAQLDDD----ERFPLPEVIRVPQG 69

                  ....*..
gi 356567478  682 SSQARFL 688
Cdd:pfam00626  70 KEPARFL 76
gelsolin_like cd11280
Tandemly repeated domains found in gelsolin, severin, villin, and related proteins; Gelsolin ...
590-688 5.97e-07

Tandemly repeated domains found in gelsolin, severin, villin, and related proteins; Gelsolin repeats occur in gelsolin, severin, villin, advillin, villidin, supervillin, flightless, quail, fragmin, and other proteins, usually in several copies. They co-occur with villin headpiece domains, leucine-rich repeats, and several other domains. These gelsolin-related actin binding proteins (GRABPs) play regulatory roles in the assembly and disassembly of actin filaments; they are involved in F-actin capping, uncapping, severing, or the nucleation of actin filaments. Severing of actin filaments is Ca2+ dependent. Villins are also linked to generating bundles of F-actin with uniform filament polarity, which is most likely mediated by their extra villin headpiece domain. Many family members have also adopted functions in the nucleus, including the regulation of transcription. Supervillin, gelsolin, and flightless I are involved in intracellular signaling via nuclear hormone receptors. The gelsolin-like domain is distantly related to the actin depolymerizing domains found in cofilin and similar proteins.


Pssm-ID: 200436  Cd Length: 88  Bit Score: 47.75  E-value: 5.97e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 590 QPTLFQYSFDG--PPVPVLLDIRSISPDFILLFDsffcvvihYGSKIAQWrkLGYdkdpnhESLRKLLEAPELDAEQLVA 667
Cdd:cd11280    1 PPRLYRVRGSKaiEIEEVPLASSSLDSDDVFVLD--------TGSEIYIW--QGR------ASSQAELAAAALLAKELDE 64
                         90       100
                 ....*....|....*....|.
gi 356567478 668 DRLPVPRIIRCDQHSSQARFL 688
Cdd:cd11280   65 ERKGKPEIVRIRQGQEPREFW 85
Sec24-like cd01479
Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the ...
202-342 4.63e-06

Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24 polypeptides fold into five distinct domains: a beta-barrel, a zinc finger, a vWA or trunk, an all helical region and a carboxy Gelsolin domain. The members of this subgroup carry a partial MIDAS motif and have the overall Para-Rossmann type fold that is characteristic of this superfamily.


Pssm-ID: 238756 [Multi-domain]  Cd Length: 244  Bit Score: 48.42  E-value: 4.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356567478 202 FLLPISECQFSITTAIEEI---HSTSNSTISasrpprCTGSAISVALGLLESCpintGSRILVFTSGPATLGPGIVVDSD 278
Cdd:cd01479   85 LLVNLKESRQVIEDLLDQIpemFQDTKETES------ALGPALQAAFLLLKET----GGKIIVFQSSLPTLGAGKLKSRE 154
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 356567478 279 RRQPIRTHhhifnAQATHYAKSSAFYNQLSKRLSGASVVLDLFACSLDQVGAAELRGPVEHSGG 342
Cdd:cd01479  155 DPKLLSTD-----KEKQLLQPQTDFYKKLALECVKSQISVDLFLFSNQYVDVATLGCLSRLTGG 213
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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