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Conserved domains on  [gi|571492069|ref|XP_003541098|]
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uncharacterized protein LOC100790779 [Glycine max]

Protein Classification

DC1 domain-containing protein( domain architecture ID 10503954)

DC1 (divergent C1) domain-containing protein similar to Capsicum annuum cysteine/histidine-rich DC1 domain protein CaDC1 that binds both RNA and DNA and is required for plant cell death and defense response

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 33-77 4.41e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.05  E-value: 4.41e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 571492069   33 FSHPqHKLRFEYS--EFPFKCDGCKEV--GIGSRYKCSICDFDLHMHCA 77
Cdd:pfam03107   1 PSHP-HPLTLTGSprDGSFTCDACGLKidGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 100-134 2.14e-04

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 38.13  E-value: 2.14e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 571492069  100 PPGDTPRYCNACEKDVRGF--LYHCKACGFDLHPCCA 134
Cdd:pfam03107  12 SPRDGSFTCDACGLKIDGFfgFYSCSECDFVLHERCA 48
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 33-77 4.41e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.05  E-value: 4.41e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 571492069   33 FSHPqHKLRFEYS--EFPFKCDGCKEV--GIGSRYKCSICDFDLHMHCA 77
Cdd:pfam03107   1 PSHP-HPLTLTGSprDGSFTCDACGLKidGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 100-134 2.14e-04

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 38.13  E-value: 2.14e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 571492069  100 PPGDTPRYCNACEKDVRGF--LYHCKACGFDLHPCCA 134
Cdd:pfam03107  12 SPRDGSFTCDACGLKIDGFfgFYSCSECDFVLHERCA 48
ZZ_NBR1_like cd02340
Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 ...
 51-76 1.75e-03

Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.


Pssm-ID: 239080  Cd Length: 43  Bit Score: 35.31  E-value: 1.75e-03
                         10        20
                 ....*....|....*....|....*..
gi 571492069  51 CDGCKEVGIGSRYKCSIC-DFDLHMHC 76
Cdd:cd02340    3 CDGCQGPIVGVRYKCLVCpDYDLCESC 29
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 33-77 4.41e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.05  E-value: 4.41e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 571492069   33 FSHPqHKLRFEYS--EFPFKCDGCKEV--GIGSRYKCSICDFDLHMHCA 77
Cdd:pfam03107   1 PSHP-HPLTLTGSprDGSFTCDACGLKidGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 100-134 2.14e-04

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 38.13  E-value: 2.14e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 571492069  100 PPGDTPRYCNACEKDVRGF--LYHCKACGFDLHPCCA 134
Cdd:pfam03107  12 SPRDGSFTCDACGLKIDGFfgFYSCSECDFVLHERCA 48
ZZ_NBR1_like cd02340
Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 ...
 51-76 1.75e-03

Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.


Pssm-ID: 239080  Cd Length: 43  Bit Score: 35.31  E-value: 1.75e-03
                         10        20
                 ....*....|....*....|....*..
gi 571492069  51 CDGCKEVGIGSRYKCSIC-DFDLHMHC 76
Cdd:cd02340    3 CDGCQGPIVGVRYKCLVCpDYDLCESC 29
ZZ_Mind_bomb cd02339
Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. ...
 51-89 4.92e-03

Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.


Pssm-ID: 239079  Cd Length: 45  Bit Score: 34.36  E-value: 4.92e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 571492069  51 CDGCKEVGI-GSRYKCSIC-DFDLHMHCAMITSPTLLHPFY 89
Cdd:cd02339    3 CDTCRKQGIiGIRWKCAECpNYDLCTTCYHGDKHDLEHRFY 43
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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