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Conserved domains on  [gi|356543792|ref|XP_003540344|]
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uncharacterized protein LOC100817529 [Glycine max]

Protein Classification

DUF3774 domain-containing protein( domain architecture ID 10576462)

DUF3774 domain-containing protein similar to Arabidopsis thaliana wound-responsive family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3774 pfam12609
Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family ...
 9-92 1.85e-21

Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.


:

Pssm-ID: 463641  Cd Length: 77  Bit Score: 80.08  E-value: 1.85e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356543792   9 MAATVAVAQGHTDPGH-KCKTALTSIHHNRSRLFsggalsdlRPLSGVVGSDVAGSVAGSSDVENRVRQADDSLRKVMYL 87
Cdd:pfam12609  1 VAASVGAVEALKDQGLcRWNYALRSLHQHAKSSA--------RSLSQAKKGSDSAGVARSSSSEEKRKQAEESLRTVMYL 72


                 ....*
gi 356543792  88 SCWGQ 92
Cdd:pfam12609 73 SCWGP 77
 
Name Accession Description Interval E-value
DUF3774 pfam12609
Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family ...
 9-92 1.85e-21

Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.


Pssm-ID: 463641  Cd Length: 77  Bit Score: 80.08  E-value: 1.85e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356543792   9 MAATVAVAQGHTDPGH-KCKTALTSIHHNRSRLFsggalsdlRPLSGVVGSDVAGSVAGSSDVENRVRQADDSLRKVMYL 87
Cdd:pfam12609  1 VAASVGAVEALKDQGLcRWNYALRSLHQHAKSSA--------RSLSQAKKGSDSAGVARSSSSEEKRKQAEESLRTVMYL 72


                 ....*
gi 356543792  88 SCWGQ 92
Cdd:pfam12609 73 SCWGP 77
PLN00165 PLN00165
hypothetical protein; Provisional
 1-91 2.58e-09

hypothetical protein; Provisional


Pssm-ID: 165732  Cd Length: 88  Bit Score: 49.31  E-value: 2.58e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356543792  1 MSYLNRVWM-AATVAVAQGHTDPGH-KCKTALTSIHHNrsrlfsggALSDLRPLSGVVGSDVAGSVAGSSDV-ENRVRQA 77
Cdd:PLN00165  1 MSHMGKAWIvAASVGAVEALKDQGFcRWNYTLRSIHQH--------AKNNLRSFSQAKKLSSSSSAMVSSRVrEEKAKQS 72

                        90
                ....*....|....
gi 356543792 78 DDSLRKVMYLSCWG 91
Cdd:PLN00165 73 EESLRTVMYLSCWG 86
YjgH_like cd02198
YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, ...
 41-85 5.72e-03

YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.


Pssm-ID: 100005  Cd Length: 111  Bit Score: 33.39  E-value: 5.72e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 356543792  41 FSGGALS-DLRPLSGVVGSDVAGSVAGssDVENRVRQADDSLRKVM 85
Cdd:cd02198    3 YSPAVRVgDTLFVSGQVGSDADGSVAE--DFEAQFRLAFQNLGAVL 46
 
Name Accession Description Interval E-value
DUF3774 pfam12609
Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family ...
 9-92 1.85e-21

Wound-induced protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.


Pssm-ID: 463641  Cd Length: 77  Bit Score: 80.08  E-value: 1.85e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356543792   9 MAATVAVAQGHTDPGH-KCKTALTSIHHNRSRLFsggalsdlRPLSGVVGSDVAGSVAGSSDVENRVRQADDSLRKVMYL 87
Cdd:pfam12609  1 VAASVGAVEALKDQGLcRWNYALRSLHQHAKSSA--------RSLSQAKKGSDSAGVARSSSSEEKRKQAEESLRTVMYL 72


                 ....*
gi 356543792  88 SCWGQ 92
Cdd:pfam12609 73 SCWGP 77
PLN00165 PLN00165
hypothetical protein; Provisional
 1-91 2.58e-09

hypothetical protein; Provisional


Pssm-ID: 165732  Cd Length: 88  Bit Score: 49.31  E-value: 2.58e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 356543792  1 MSYLNRVWM-AATVAVAQGHTDPGH-KCKTALTSIHHNrsrlfsggALSDLRPLSGVVGSDVAGSVAGSSDV-ENRVRQA 77
Cdd:PLN00165  1 MSHMGKAWIvAASVGAVEALKDQGFcRWNYTLRSIHQH--------AKNNLRSFSQAKKLSSSSSAMVSSRVrEEKAKQS 72

                        90
                ....*....|....
gi 356543792 78 DDSLRKVMYLSCWG 91
Cdd:PLN00165 73 EESLRTVMYLSCWG 86
YjgH_like cd02198
YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, ...
 41-85 5.72e-03

YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.


Pssm-ID: 100005  Cd Length: 111  Bit Score: 33.39  E-value: 5.72e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 356543792  41 FSGGALS-DLRPLSGVVGSDVAGSVAGssDVENRVRQADDSLRKVM 85
Cdd:cd02198    3 YSPAVRVgDTLFVSGQVGSDADGSVAE--DFEAQFRLAFQNLGAVL 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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