protein LOL1 [Glycine max]
Protein Classification
LSD1-type zinc finger protein( domain architecture ID 12072765)
LSD1-type zinc finger protein similar to Oryza sativa LSD1 (protein LESION SIMULATING DISEASE 1) that functions as a negative regulator of programmed cell death and hypersensitive response (HR) and a positive regulator of callus differentiation
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| zf-LSD1 super family | cl26935 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
66-95 | 2.13e-05 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. The actual alignment was detected with superfamily member TIGR01053: Pssm-ID: 474871 Cd Length: 31 Bit Score: 39.36 E-value: 2.13e-05
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| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
30-52 | 1.90e-04 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. : Pssm-ID: 462045 Cd Length: 23 Bit Score: 36.68 E-value: 1.90e-04
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| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
107-128 | 3.08e-03 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. : Pssm-ID: 462045 Cd Length: 23 Bit Score: 33.22 E-value: 3.08e-03
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| Name | Accession | Description | Interval | E-value | ||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
66-95 | 2.13e-05 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 39.36 E-value: 2.13e-05
|
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| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
69-91 | 6.21e-05 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 37.84 E-value: 6.21e-05
|
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| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
30-52 | 1.90e-04 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 36.68 E-value: 1.90e-04
|
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| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
27-57 | 3.83e-04 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 35.90 E-value: 3.83e-04
|
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| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
107-128 | 3.08e-03 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 33.22 E-value: 3.08e-03
|
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| Name | Accession | Description | Interval | E-value | ||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
66-95 | 2.13e-05 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 39.36 E-value: 2.13e-05
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
69-91 | 6.21e-05 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 37.84 E-value: 6.21e-05
|
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| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
30-52 | 1.90e-04 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 36.68 E-value: 1.90e-04
|
||||||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
27-57 | 3.83e-04 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 35.90 E-value: 3.83e-04
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
107-128 | 3.08e-03 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 33.22 E-value: 3.08e-03
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| Blast search parameters | ||||
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