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Conserved domains on  [gi|336259783|ref|XP_003344691|]
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uncharacterized protein SMAC_07260 [Sordaria macrospora k-hell]

Protein Classification

BTB/POZ domain-containing protein( domain architecture ID 10525240)

BTB (BR-C, ttk and bab)/POZ (Pox virus and Zinc finger) domain-containing protein similar to Drosophila melanogaster protein Jim Lovell (Lov), protein bric-a-brac 1 (BAB1), and protein bric-a-brac 2 (BAB2), which may play regulatory roles during cell development

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_psq pfam05225
helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak ...
 14-58 8.61e-14

helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.


:

Pssm-ID: 283007  Cd Length: 45  Bit Score: 65.02  E-value: 8.61e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 336259783   14 TPTQFSAAIAAVSSGSLSIRKAAQAHSIPFSTLQRHFQGTPQAKR 58
Cdd:pfam05225   1 TPEALAEALEAVRNGQMSIRKAARIYGIPYSTLWRRKRGKYSLKR 45
HTH_Tnp_Tc5 super family cl12115
Tc5 transposase DNA-binding domain;
68-106 3.04e-03

Tc5 transposase DNA-binding domain;


The actual alignment was detected with superfamily member smart00674:

Pssm-ID: 472278  Cd Length: 66  Bit Score: 36.12  E-value: 3.04e-03
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 336259783    68 QKLTPEQEENIAMWVLAQENLGLPVKMEDIRRFADRVLE 106
Cdd:smart00674   1 RRLYPLLEKALYEWILRQEALGIPISGEDIREKALEILQ 39
 
Name Accession Description Interval E-value
HTH_psq pfam05225
helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak ...
 14-58 8.61e-14

helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.


Pssm-ID: 283007  Cd Length: 45  Bit Score: 65.02  E-value: 8.61e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 336259783   14 TPTQFSAAIAAVSSGSLSIRKAAQAHSIPFSTLQRHFQGTPQAKR 58
Cdd:pfam05225   1 TPEALAEALEAVRNGQMSIRKAARIYGIPYSTLWRRKRGKYSLKR 45
CENPB smart00674
Putative DNA-binding domain in centromere protein B, mouse jerky and transposases;
68-106 3.04e-03

Putative DNA-binding domain in centromere protein B, mouse jerky and transposases;


Pssm-ID: 197828  Cd Length: 66  Bit Score: 36.12  E-value: 3.04e-03
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 336259783    68 QKLTPEQEENIAMWVLAQENLGLPVKMEDIRRFADRVLE 106
Cdd:smart00674   1 RRLYPLLEKALYEWILRQEALGIPISGEDIREKALEILQ 39
 
Name Accession Description Interval E-value
HTH_psq pfam05225
helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak ...
 14-58 8.61e-14

helix-turn-helix, Psq domain; This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster. In pipsqueak this domain binds to GAGA sequence.


Pssm-ID: 283007  Cd Length: 45  Bit Score: 65.02  E-value: 8.61e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 336259783   14 TPTQFSAAIAAVSSGSLSIRKAAQAHSIPFSTLQRHFQGTPQAKR 58
Cdd:pfam05225   1 TPEALAEALEAVRNGQMSIRKAARIYGIPYSTLWRRKRGKYSLKR 45
CENPB smart00674
Putative DNA-binding domain in centromere protein B, mouse jerky and transposases;
68-106 3.04e-03

Putative DNA-binding domain in centromere protein B, mouse jerky and transposases;


Pssm-ID: 197828  Cd Length: 66  Bit Score: 36.12  E-value: 3.04e-03
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 336259783    68 QKLTPEQEENIAMWVLAQENLGLPVKMEDIRRFADRVLE 106
Cdd:smart00674   1 RRLYPLLEKALYEWILRQEALGIPISGEDIREKALEILQ 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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