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Conserved domains on  [gi|312065849|ref|XP_003135989|]
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hypothetical protein LOAG_00401 [Loa loa]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NDUF_B4 super family cl29766
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 37-149 8.47e-44

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


The actual alignment was detected with superfamily member pfam07225:

Pssm-ID: 453057  Cd Length: 124  Bit Score: 141.00  E-value: 8.47e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312065849   37 EDYGISDEEKKAVLWRYRLKEILKKEYLRREYDPHtfkyREGVVIDPAVFRW-YSANSMQYEFFRYTPRSVFL--YAGSF 113
Cdd:pfam07225  17 AEYNLSPETRRAVAERLAIRARLKRQYLLQLNDPH----RRGLIEDPALTRWtYARSANIYPNFRPTPKTSLLgaLFGVV 92

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 312065849  114 IFVFYILarMMFQFEDRGRDMCLDGELlwwDRMYNR 149
Cdd:pfam07225  93 PLFFYYY--VFKTDRDRKEKLIQEGKL---DRPFNL 123
 
Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 37-149 8.47e-44

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


Pssm-ID: 429355  Cd Length: 124  Bit Score: 141.00  E-value: 8.47e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312065849   37 EDYGISDEEKKAVLWRYRLKEILKKEYLRREYDPHtfkyREGVVIDPAVFRW-YSANSMQYEFFRYTPRSVFL--YAGSF 113
Cdd:pfam07225  17 AEYNLSPETRRAVAERLAIRARLKRQYLLQLNDPH----RRGLIEDPALTRWtYARSANIYPNFRPTPKTSLLgaLFGVV 92

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 312065849  114 IFVFYILarMMFQFEDRGRDMCLDGELlwwDRMYNR 149
Cdd:pfam07225  93 PLFFYYY--VFKTDRDRKEKLIQEGKL---DRPFNL 123
 
Name Accession Description Interval E-value
NDUF_B4 pfam07225
NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several ...
 37-149 8.47e-44

NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).


Pssm-ID: 429355  Cd Length: 124  Bit Score: 141.00  E-value: 8.47e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312065849   37 EDYGISDEEKKAVLWRYRLKEILKKEYLRREYDPHtfkyREGVVIDPAVFRW-YSANSMQYEFFRYTPRSVFL--YAGSF 113
Cdd:pfam07225  17 AEYNLSPETRRAVAERLAIRARLKRQYLLQLNDPH----RRGLIEDPALTRWtYARSANIYPNFRPTPKTSLLgaLFGVV 92

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 312065849  114 IFVFYILarMMFQFEDRGRDMCLDGELlwwDRMYNR 149
Cdd:pfam07225  93 PLFFYYY--VFKTDRDRKEKLIQEGKL---DRPFNL 123
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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