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Conserved domains on  [gi|302822713|ref|XP_002993013|]
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protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Selaginella moellendorffii]

Protein Classification

LPA1 family protein( domain architecture ID 11477424)

LPA1 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 1-422 0e+00

LOW PSII ACCUMULATION1; Provisional


:

Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 772.52  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713   1 MDVLCFSGC-------------------VSLRCGAAPRRLAFGRAKIAIRVRAAKDGSESQVKTATDAVNLGLSLFSKGR 61
Cdd:PLN03098  11 MHLLCFSSCprsrvkqrrswlppgdatlVNLRRGRAPRRLLFGRSSSSPSSSPAKDGSEADVKTAEDAVNLGLSLFSKGR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713  62 VKDALHQFDTALAMNPNFDEAQAAYYNKACCHASREEPAKAAQALQTALRDYNVKFHVILNDPDLAPFRASPEFKALQDE 141
Cdd:PLN03098  91 VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILNDPDLAPFRASPEFKELQEE 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713 142 ARKGGEDTGSSFRRDLKLISEVQAPFRGVRKFFYVAFTIAAGIATFITVPRLIRALQGGEDAPSVTETAQNLAIDLAGIV 221
Cdd:PLN03098 171 ARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIV 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713 222 AFVSLFIWDSKKEETQMSQITRNETLSRLPVRLGTGRIVEVVQLRGITRPVILAGTKESIKGALEKAERYRKDLLQRGVL 301
Cdd:PLN03098 251 AFVSLFLWENKKEEEQMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKESVTLAMQKAERYRTELLKRGVL 330

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713 302 LIPVEW-RKKDETPKKKGFGRSVKAPAAG-SGSDDFQKRAQDAALKAVLESEKRFVAEVVSQAEWERWIFEQQESEGVTG 379
Cdd:PLN03098 331 LIPVVWgENKDPQPKKKGFGRSSKAAASLpSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTP 410

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 302822713 380 GEEVFIVLRLDGRIRKSGRGMPEWQELVKELPVLDSMMSKLER 422
Cdd:PLN03098 411 GEDVYIILRLDGRVRRSGRGMPEWQEIVKELPPLDSLLSKLER 453
 
Name Accession Description Interval E-value
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 1-422 0e+00

LOW PSII ACCUMULATION1; Provisional


Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 772.52  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713   1 MDVLCFSGC-------------------VSLRCGAAPRRLAFGRAKIAIRVRAAKDGSESQVKTATDAVNLGLSLFSKGR 61
Cdd:PLN03098  11 MHLLCFSSCprsrvkqrrswlppgdatlVNLRRGRAPRRLLFGRSSSSPSSSPAKDGSEADVKTAEDAVNLGLSLFSKGR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713  62 VKDALHQFDTALAMNPNFDEAQAAYYNKACCHASREEPAKAAQALQTALRDYNVKFHVILNDPDLAPFRASPEFKALQDE 141
Cdd:PLN03098  91 VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILNDPDLAPFRASPEFKELQEE 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713 142 ARKGGEDTGSSFRRDLKLISEVQAPFRGVRKFFYVAFTIAAGIATFITVPRLIRALQGGEDAPSVTETAQNLAIDLAGIV 221
Cdd:PLN03098 171 ARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIV 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713 222 AFVSLFIWDSKKEETQMSQITRNETLSRLPVRLGTGRIVEVVQLRGITRPVILAGTKESIKGALEKAERYRKDLLQRGVL 301
Cdd:PLN03098 251 AFVSLFLWENKKEEEQMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKESVTLAMQKAERYRTELLKRGVL 330

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713 302 LIPVEW-RKKDETPKKKGFGRSVKAPAAG-SGSDDFQKRAQDAALKAVLESEKRFVAEVVSQAEWERWIFEQQESEGVTG 379
Cdd:PLN03098 331 LIPVVWgENKDPQPKKKGFGRSSKAAASLpSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTP 410

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 302822713 380 GEEVFIVLRLDGRIRKSGRGMPEWQELVKELPVLDSMMSKLER 422
Cdd:PLN03098 411 GEDVYIILRLDGRVRRSGRGMPEWQEIVKELPPLDSLLSKLER 453
DUF3493 pfam11998
Low psii accumulation1 / Rep27; This family includes members such as low psii accumulation1 ...
 153-231 1.58e-23

Low psii accumulation1 / Rep27; This family includes members such as low psii accumulation1 (lpa1) from plants as well as Rep27 proteins found in unicellular green alga Chlamydomonas reinhardtii. The Arabidopsis LPA1 is a chaperone required for efficient photosystem II (PSII) assembly. It binds to psbA during de novo biogenesis of PSII. Other studies show that REP27 in Chlamydomonas reinhardtii chloroplast thylakoids, plays a dual role in the regulation of D1 protein turnover by facilitating cotranslational biosynthesis insertion (C-terminal domain) and activation (tetratricopeptide repeat [TPR] motifs) of the nascent D1 during the PSII repair process.


Pssm-ID: 432250  Cd Length: 73  Bit Score: 93.03  E-value: 1.58e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 302822713  153 FRRDLKLISEVQAPFRGVRKFFYVAFTIAAGIATFITVPRLIRALqggedaPSVTETAQNLAIDLAGIVAFVSLFIWDS 231
Cdd:pfam11998   1 PEQYARLRAEAQAPFRGLRLFFYLAFGASAGIGAFIFLLQLLAGL------PDLEEALPNLAIQVGAVALMVFLFRWER 73
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
51-144 6.34e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.91  E-value: 6.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALRDYNvkfhvilNDPDLAPFR 130
Cdd:COG4785  112 NRGLAYLLLGDYDAALEDFDRALELDPDYAY---AYLNRGIALYYLGRYELAIADLEKALELDP-------NDPERALWL 181

                         90
                 ....*....|....
gi 302822713 131 ASPEFKALQDEARK 144
Cdd:COG4785  182 YLAERKLDPEKALA 195
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 51-79 6.35e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 6.35e-03
                           10        20
                   ....*....|....*....|....*....
gi 302822713    51 NLGLSLFSKGRVKDALHQFDTALAMNPNF 79
Cdd:smart00028   6 NLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
LPA1 PLN03098
LOW PSII ACCUMULATION1; Provisional
 1-422 0e+00

LOW PSII ACCUMULATION1; Provisional


Pssm-ID: 215573 [Multi-domain]  Cd Length: 453  Bit Score: 772.52  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713   1 MDVLCFSGC-------------------VSLRCGAAPRRLAFGRAKIAIRVRAAKDGSESQVKTATDAVNLGLSLFSKGR 61
Cdd:PLN03098  11 MHLLCFSSCprsrvkqrrswlppgdatlVNLRRGRAPRRLLFGRSSSSPSSSPAKDGSEADVKTAEDAVNLGLSLFSKGR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713  62 VKDALHQFDTALAMNPNFDEAQAAYYNKACCHASREEPAKAAQALQTALRDYNVKFHVILNDPDLAPFRASPEFKALQDE 141
Cdd:PLN03098  91 VKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILNDPDLAPFRASPEFKELQEE 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713 142 ARKGGEDTGSSFRRDLKLISEVQAPFRGVRKFFYVAFTIAAGIATFITVPRLIRALQGGEDAPSVTETAQNLAIDLAGIV 221
Cdd:PLN03098 171 ARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDGAPDVLETAGNAAINIGGIV 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713 222 AFVSLFIWDSKKEETQMSQITRNETLSRLPVRLGTGRIVEVVQLRGITRPVILAGTKESIKGALEKAERYRKDLLQRGVL 301
Cdd:PLN03098 251 AFVSLFLWENKKEEEQMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKESVTLAMQKAERYRTELLKRGVL 330

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713 302 LIPVEW-RKKDETPKKKGFGRSVKAPAAG-SGSDDFQKRAQDAALKAVLESEKRFVAEVVSQAEWERWIFEQQESEGVTG 379
Cdd:PLN03098 331 LIPVVWgENKDPQPKKKGFGRSSKAAASLpSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTP 410

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|...
gi 302822713 380 GEEVFIVLRLDGRIRKSGRGMPEWQELVKELPVLDSMMSKLER 422
Cdd:PLN03098 411 GEDVYIILRLDGRVRRSGRGMPEWQEIVKELPPLDSLLSKLER 453
DUF3493 pfam11998
Low psii accumulation1 / Rep27; This family includes members such as low psii accumulation1 ...
 153-231 1.58e-23

Low psii accumulation1 / Rep27; This family includes members such as low psii accumulation1 (lpa1) from plants as well as Rep27 proteins found in unicellular green alga Chlamydomonas reinhardtii. The Arabidopsis LPA1 is a chaperone required for efficient photosystem II (PSII) assembly. It binds to psbA during de novo biogenesis of PSII. Other studies show that REP27 in Chlamydomonas reinhardtii chloroplast thylakoids, plays a dual role in the regulation of D1 protein turnover by facilitating cotranslational biosynthesis insertion (C-terminal domain) and activation (tetratricopeptide repeat [TPR] motifs) of the nascent D1 during the PSII repair process.


Pssm-ID: 432250  Cd Length: 73  Bit Score: 93.03  E-value: 1.58e-23
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 302822713  153 FRRDLKLISEVQAPFRGVRKFFYVAFTIAAGIATFITVPRLIRALqggedaPSVTETAQNLAIDLAGIVAFVSLFIWDS 231
Cdd:pfam11998   1 PEQYARLRAEAQAPFRGLRLFFYLAFGASAGIGAFIFLLQLLAGL------PDLEEALPNLAIQVGAVALMVFLFRWER 73
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
51-144 6.34e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.91  E-value: 6.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALRDYNvkfhvilNDPDLAPFR 130
Cdd:COG4785  112 NRGLAYLLLGDYDAALEDFDRALELDPDYAY---AYLNRGIALYYLGRYELAIADLEKALELDP-------NDPERALWL 181

                         90
                 ....*....|....
gi 302822713 131 ASPEFKALQDEARK 144
Cdd:COG4785  182 YLAERKLDPEKALA 195
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-111 1.55e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.23  E-value: 1.55e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALR 111
Cdd:COG0457   47 NLGLAYLRLGRYEEALADYEQALELDPDDAE---ALNNLGLALQALGRYEEALEDYDKALE 104
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
25-111 1.68e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.76  E-value: 1.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713  25 RAKIAIRVRAAKDGSESQVKTATDAVNLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQ 104
Cdd:COG4785   52 ALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAE---AYNNRGLAYLLLGDYDAALE 128


                 ....*..
gi 302822713 105 ALQTALR 111
Cdd:COG4785  129 DFDRALE 135
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 51-113 2.24e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 2.24e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEAQAAYYNKACCHASREEPAKAAQALQTALRDY 113
Cdd:COG1729   35 WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKY 97
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-111 2.91e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 48.46  E-value: 2.91e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALR 111
Cdd:COG0457   13 NLGLAYRRLGRYEEAIEDYEKALELDPDDAE---ALYNLGLAYLRLGRYEEALADYEQALE 70
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 51-113 3.90e-06

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 44.25  E-value: 3.90e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 302822713   51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEAQAAYYNKACCHASREEPAKAAQALQTALRDY 113
Cdd:pfam13432   2 ALARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 51-111 8.03e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 48.07  E-value: 8.03e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALR 111
Cdd:COG3914  117 NLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEEAIAALRRALE 174
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-111 1.19e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.54  E-value: 1.19e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALR 111
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALELDPDDAE---ALYNLGLALLELGRYDEAIEAYERALE 138
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
51-111 4.03e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 4.03e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 302822713  51 NLGLSLFSKGRVKDALhQFDTALAMNPNFDEAqaaYYNKACCHASREEPAKAAQALQTALR 111
Cdd:COG3063   31 NLGLLLLEQGRYDEAI-ALEKALKLDPNNAEA---LLNLAELLLELGDYDEALAYLERALE 87
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-143 4.11e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.61  E-value: 4.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALRDYNVKFHVILNDPDLAPFR 130
Cdd:COG0457  115 NLGLALLELGRYDEAIEAYERALELDPDDAD---ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALA 191

                         90
                 ....*....|...
gi 302822713 131 ASPEFKALQDEAR 143
Cdd:COG0457  192 AAEVLLALLLALE 204
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 50-111 6.58e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.98  E-value: 6.58e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 302822713  50 VNLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALR 111
Cdd:COG3914  150 LNLGEALRRLGRLEEAIAALRRALELDPDNAE---ALNNLGNALQDLGRLEEAIAAYRRALE 208
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 54-113 2.42e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 2.42e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713  54 LSLFSKGRVKDALHQFDTALAMNPNFDEAQAAYYNKACCHASREEPAKAAQALQTALRDY 113
Cdd:COG1729    1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY 60
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 51-111 2.63e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 2.63e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALR 111
Cdd:COG5010   93 NLALLYSRSGDKDEAKEYYEKALALSPDNPN---AYSNLAALLLSLGQDDEAKAALQRALG 150
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 16-111 5.16e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 40.33  E-value: 5.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713  16 AAPRRLAFGRAKIAIRVRAAKDGSESQVKTATDAVNLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHAS 95
Cdd:COG5010   24 VEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPE---LYYNLALLYSR 100

                         90
                 ....*....|....*.
gi 302822713  96 REEPAKAAQALQTALR 111
Cdd:COG5010  101 SGDKDEAKEYYEKALA 116
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 51-113 7.16e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 39.79  E-value: 7.16e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALRDY 113
Cdd:COG4783   77 NLGLALLKAGDYDEALALLEKALKLDPEHPE---AYLRLARAYRALGRPDEAIAALEKALELD 136
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 52-111 2.39e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 40.36  E-value: 2.39e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 302822713  52 LGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALR 111
Cdd:COG3914   84 AALLLQALGRYEEALALYRRALALNPDNAE---ALFNLGNLLLALGRLEEALAALRRALA 140
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 51-111 3.43e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 37.48  E-value: 3.43e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 302822713  51 NLGLSLFSKGRVKDALHQFDTALAMNPNFDEaqaAYYNKACCHASREEPAKAAQALQTALR 111
Cdd:COG4783   43 LLGEILLQLGDLDEAIVLLHEALELDPDEPE---ARLNLGLALLKAGDYDEALALLEKALK 100
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 50-111 4.10e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 37.29  E-value: 4.10e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 302822713  50 VNLGLSLFSKGRVKDALHQFDTALAMNPNFDEAQAAYynkACCHASREEPAKAAQALQTALR 111
Cdd:COG4235   21 LLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL---AEALLAAGDTEEAEELLERALA 79
TPR_1 pfam00515
Tetratricopeptide repeat;
51-79 4.19e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 34.70  E-value: 4.19e-03
                          10        20
                  ....*....|....*....|....*....
gi 302822713   51 NLGLSLFSKGRVKDALHQFDTALAMNPNF 79
Cdd:pfam00515   6 NLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 51-79 6.35e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 6.35e-03
                           10        20
                   ....*....|....*....|....*....
gi 302822713    51 NLGLSLFSKGRVKDALHQFDTALAMNPNF 79
Cdd:smart00028   6 NLGNAYLKLGDYDEALEYYEKALELDPNN 34
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 44-111 8.64e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.14  E-value: 8.64e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 302822713  44 KTATDAVNLGLSLFSKGRVKDALHQFDTALAMNPNFdeaQAAYYNKACCHASREEPAKAAQALQTALR 111
Cdd:COG4235   49 DNADALLDLAEALLAAGDTEEAEELLERALALDPDN---PEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
TPR_12 pfam13424
Tetratricopeptide repeat;
45-111 8.78e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 35.06  E-value: 8.78e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 302822713   45 TATDAVNLGLSLFSKGRVKDALHQFDTALAM-----NPNFDEAQAAYYNKACCHASREEPAKAAQALQTALR 111
Cdd:pfam13424   2 VATALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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