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Conserved domains on  [gi|1376929165|ref|XP_002972632|]
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CTP synthase isoform X2 [Selaginella moellendorffii]

Protein Classification

CTP synthase( domain architecture ID 11476640)

cytidine triphosphate (CTP) synthase catalyzes the conversion of UTP to CTP in the last committed step in pyrimidine nucleotide biosynthesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN02327 PLN02327
CTP synthase
1-552 0e+00

CTP synthase


:

Pssm-ID: 215186 [Multi-domain]  Cd Length: 557  Bit Score: 1223.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   1 MKYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
Cdd:PLN02327    1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  81 TLTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAVVPVDGKEGAADVCVIELGGTIGDIESSPFV 160
Cdd:PLN02327   81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 161 EALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGH 240
Cdd:PLN02327  161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 241 ILSIHDVSNIWHVPLLLRDQNVHLAILKKLNLSS-APQPELSEWTQRAERSDALSIPVKIGMVGKYTGLSDSYLSVLKAL 319
Cdd:PLN02327  241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSvAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 320 THASLACGRKLVIEWVASTDLEDGSPR---DLHDAAWAALKSVDGILVPGGFGDRGTQGKVLAAKYARENNVPYLGVCLG 396
Cdd:PLN02327  321 LHASVACSRKLVIDWVAASDLEDETAKetpDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 397 MQIAVIEFARSVLGLDGANSTEFDPATPHPCVLYMPEISRTHKGGTMRLGVRRTFFQKPNCLTSKLYGNESFVDERHRHR 476
Cdd:PLN02327  401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHR 480
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1376929165 477 YEVNPELVDRLEEAGLTFVGKDETGRRMEIVELPEHKYFVGVQFHPEFKSRPGKPSPVFLGLILAASKQMDSYLAS 552
Cdd:PLN02327  481 YEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQLDAVLNS 556
 
Name Accession Description Interval E-value
PLN02327 PLN02327
CTP synthase
1-552 0e+00

CTP synthase


Pssm-ID: 215186 [Multi-domain]  Cd Length: 557  Bit Score: 1223.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   1 MKYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
Cdd:PLN02327    1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  81 TLTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAVVPVDGKEGAADVCVIELGGTIGDIESSPFV 160
Cdd:PLN02327   81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 161 EALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGH 240
Cdd:PLN02327  161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 241 ILSIHDVSNIWHVPLLLRDQNVHLAILKKLNLSS-APQPELSEWTQRAERSDALSIPVKIGMVGKYTGLSDSYLSVLKAL 319
Cdd:PLN02327  241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSvAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 320 THASLACGRKLVIEWVASTDLEDGSPR---DLHDAAWAALKSVDGILVPGGFGDRGTQGKVLAAKYARENNVPYLGVCLG 396
Cdd:PLN02327  321 LHASVACSRKLVIDWVAASDLEDETAKetpDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 397 MQIAVIEFARSVLGLDGANSTEFDPATPHPCVLYMPEISRTHKGGTMRLGVRRTFFQKPNCLTSKLYGNESFVDERHRHR 476
Cdd:PLN02327  401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHR 480
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1376929165 477 YEVNPELVDRLEEAGLTFVGKDETGRRMEIVELPEHKYFVGVQFHPEFKSRPGKPSPVFLGLILAASKQMDSYLAS 552
Cdd:PLN02327  481 YEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQLDAVLNS 556
PyrG COG0504
CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]; CTP synthase ...
1-545 0e+00

CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]; CTP synthase (UTP-ammonia lyase) is part of the Pathway/BioSystem: Pyrimidine biosynthesis


Pssm-ID: 440270 [Multi-domain]  Cd Length: 535  Bit Score: 884.73  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   1 MKYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
Cdd:COG0504     1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  81 TLTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAvvpvdgKEGAADVCVIELGGTIGDIESSPFV 160
Cdd:COG0504    81 NLSKANNVTTGQIYSSVIEKERRGDYLGKTVQVIPHITDEIKRRIRRAA------EESGADVVIVEIGGTVGDIESLPFL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 161 EALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGH 240
Cdd:COG0504   155 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEIKRKIALFCNVPEEA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 241 ILSIHDVSNIWHVPLLLRDQNVHLAILKKLNLsSAPQPELSEWTQRAERSDALSIPVKIGMVGKYTGLSDSYLSVLKALT 320
Cdd:COG0504   235 VISAPDVDSIYEVPLMLHEQGLDEIVLKKLGL-EAREPDLSEWEELVERIKNPKKEVTIALVGKYVELPDAYKSVVEALK 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 321 HASLACGRKLVIEWVASTDLEDGSPRDLhdaawaaLKSVDGILVPGGFGDRGTQGKVLAAKYARENNVPYLGVCLGMQIA 400
Cdd:COG0504   314 HAGIANGVKVNIKWIDSEDLEEENAEEL-------LKGVDGILVPGGFGERGIEGKIAAIRYARENKIPFLGICLGMQLA 386
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 401 VIEFARSVLGLDGANSTEFDPATPHPCVLYMPE-ISRTHKGGTMRLGVRRTFFqKPNCLTSKLYGNESfVDERHRHRYEV 479
Cdd:COG0504   387 VIEFARNVLGLEDANSTEFDPNTPHPVIDLMPEqKDVSDLGGTMRLGAYPCKL-KPGTLAAEAYGKEE-ISERHRHRYEF 464
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1376929165 480 NPELVDRLEEAGLTFVGKDETGRRMEIVELPEHKYFVGVQFHPEFKSRPGKPSPVFLGLILAASKQ 545
Cdd:COG0504   465 NNEYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPNRPHPLFRGFVKAALEY 530
PyrG TIGR00337
CTP synthase; CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. ...
1-541 0e+00

CTP synthase; CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]


Pssm-ID: 273021 [Multi-domain]  Cd Length: 525  Bit Score: 832.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   1 MKYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
Cdd:TIGR00337   1 MKYIFVTGGVVSSLGKGITAASLGRLLKARGLNVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  81 TLTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAvvpvdgKEGAADVCVIELGGTIGDIESSPFV 160
Cdd:TIGR00337  81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRILRVA------KISGPDVVIVEIGGTVGDIESLPFL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 161 EALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGH 240
Cdd:TIGR00337 155 EAIRQFRVEVGRENVLFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSRPLDPNTKDKIALFCDVEEEA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 241 ILSIHDVSNIWHVPLLLRDQNVHLAILKKLNLsSAPQPELSEWTQRAERSDALSIPVKIGMVGKYTGLSDSYLSVLKALT 320
Cdd:TIGR00337 235 VISAKDVSSIYEVPLLLLKQGLDDYLCRRLNL-NCDEADLSEWEQLVEKFANPKHEVTIGIVGKYVELKDAYLSVIEALK 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 321 HASLACGRKLVIEWVASTDLEDGSPRDlhdaawaaLKSVDGILVPGGFGDRGTQGKVLAAKYARENNVPYLGVCLGMQIA 400
Cdd:TIGR00337 314 HAGAKLDTKVNIKWIDSEDLEEEGVEF--------LKGLDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLA 385
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 401 VIEFARSVLGLDGANSTEFDPATPHPCVLYMPEISR-THKGGTMRLGVRRTFFQkPNCLTSKLYGNESfVDERHRHRYEV 479
Cdd:TIGR00337 386 VIEFARNVAGLEGANSTEFDPDTKYPVVDLLPEQKDiSDLGGTMRLGLYPCILK-PGTLAFKLYGKEE-VYERHRHRYEV 463
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1376929165 480 NPELVDRLEEAGLTFVGKDETGRRMEIVELPEHKYFVGVQFHPEFKSRPGKPSPVFLGLILA 541
Cdd:TIGR00337 464 NNEYREQIENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNDPHPLFLGFVKA 525
CTP_synth_N pfam06418
CTP synthase N-terminus; This family consists of the N-terminal region of the CTP synthase ...
2-272 0e+00

CTP synthase N-terminus; This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyzes the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.


Pssm-ID: 461903  Cd Length: 265  Bit Score: 540.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   2 KYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVT 81
Cdd:pfam06418   1 KYIFVTGGVVSGLGKGITAASLGRLLKSRGLKVTIIKIDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDIN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  82 LTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAvvpvdgKEGAADVCVIELGGTIGDIESSPFVE 161
Cdd:pfam06418  81 LTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVA------KEVGPDVVIVEIGGTVGDIESLPFLE 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 162 ALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGHI 241
Cdd:pfam06418 155 AIRQLRLEVGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDIIVCRSERPLDEEVKEKIALFCNVPKEAV 234
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1376929165 242 LSIHDVSNIWHVPLLLRDQNVHLAILKKLNL 272
Cdd:pfam06418 235 ISAPDVSSIYEVPLLLEEQGLDDIILKRLNL 265
CTPS_N cd03113
N-terminal domain of cytidine 5'-triphosphate synthase; Cytidine 5'-triphosphate synthase ...
2-268 0e+00

N-terminal domain of cytidine 5'-triphosphate synthase; Cytidine 5'-triphosphate synthase (CTPS) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product.


Pssm-ID: 349767  Cd Length: 261  Bit Score: 526.28  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   2 KYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVT 81
Cdd:cd03113     1 KYIFVTGGVVSGLGKGITASSIGRLLKSRGLRVTAIKIDPYLNVDAGTMSPYEHGEVFVLDDGGETDLDLGNYERFLDVN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  82 LTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAVVPVdgkegaADVCVIELGGTIGDIESSPFVE 161
Cdd:cd03113    81 LTRDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAKIPE------PDVCIVEIGGTVGDIESLPFLE 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 162 ALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGHI 241
Cdd:cd03113   155 ALRQFQFEVGRENFLFIHVTLVPYLEATGEQKTKPTQHSVKELRSLGIQPDIIVCRSEKPLDEETKEKIALFCNVPPEAV 234
                         250       260
                  ....*....|....*....|....*..
gi 1376929165 242 LSIHDVSNIWHVPLLLRDQNVHLAILK 268
Cdd:cd03113   235 ISVHDVSSIYEVPLLLEKQGLDDYILR 261
 
Name Accession Description Interval E-value
PLN02327 PLN02327
CTP synthase
1-552 0e+00

CTP synthase


Pssm-ID: 215186 [Multi-domain]  Cd Length: 557  Bit Score: 1223.34  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   1 MKYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
Cdd:PLN02327    1 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  81 TLTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAVVPVDGKEGAADVCVIELGGTIGDIESSPFV 160
Cdd:PLN02327   81 TLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIESMPFI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 161 EALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGH 240
Cdd:PLN02327  161 EALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCHVPAEN 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 241 ILSIHDVSNIWHVPLLLRDQNVHLAILKKLNLSS-APQPELSEWTQRAERSDALSIPVKIGMVGKYTGLSDSYLSVLKAL 319
Cdd:PLN02327  241 ILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSvAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLSVLKAL 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 320 THASLACGRKLVIEWVASTDLEDGSPR---DLHDAAWAALKSVDGILVPGGFGDRGTQGKVLAAKYARENNVPYLGVCLG 396
Cdd:PLN02327  321 LHASVACSRKLVIDWVAASDLEDETAKetpDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLG 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 397 MQIAVIEFARSVLGLDGANSTEFDPATPHPCVLYMPEISRTHKGGTMRLGVRRTFFQKPNCLTSKLYGNESFVDERHRHR 476
Cdd:PLN02327  401 MQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHR 480
                         490       500       510       520       530       540       550
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1376929165 477 YEVNPELVDRLEEAGLTFVGKDETGRRMEIVELPEHKYFVGVQFHPEFKSRPGKPSPVFLGLILAASKQMDSYLAS 552
Cdd:PLN02327  481 YEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQLDAVLNS 556
pyrG PRK05380
CTP synthetase; Validated
1-545 0e+00

CTP synthetase; Validated


Pssm-ID: 235437 [Multi-domain]  Cd Length: 533  Bit Score: 886.67  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   1 MKYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
Cdd:PRK05380    2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDT 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  81 TLTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAvvpvdgkeGAADVCVIELGGTIGDIESSPFV 160
Cdd:PRK05380   82 NLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDIESLPFL 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 161 EALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGH 240
Cdd:PRK05380  154 EAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFCNVPEEA 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 241 ILSIHDVSNIWHVPLLLRDQNVHLAILKKLNLsSAPQPELSEWTQRAERSDALSIPVKIGMVGKYTGLSDSYLSVLKALT 320
Cdd:PRK05380  234 VISAPDVDSIYEVPLLLHEQGLDDIVLERLGL-EAPEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYKSVIEALK 312
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 321 HASLACGRKLVIEWVASTDLEDGSPRDLhdaawaaLKSVDGILVPGGFGDRGTQGKVLAAKYARENNVPYLGVCLGMQIA 400
Cdd:PRK05380  313 HAGIANDVKVNIKWIDSEDLEEENVAEL-------LKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLGMQLA 385
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 401 VIEFARSVLGLDGANSTEFDPATPHPCVLYMPE-ISRTHKGGTMRLGVRRTFFqKPNCLTSKLYGNESfVDERHRHRYEV 479
Cdd:PRK05380  386 VIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEqKDVSDLGGTMRLGAYPCKL-KPGTLAAEIYGKEE-IYERHRHRYEV 463
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1376929165 480 NPELVDRLEEAGLTFVGKDETGRRMEIVELPEHKYFVGVQFHPEFKSRPGKPSPVFLGLILAASKQ 545
Cdd:PRK05380  464 NNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALEN 529
PyrG COG0504
CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]; CTP synthase ...
1-545 0e+00

CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]; CTP synthase (UTP-ammonia lyase) is part of the Pathway/BioSystem: Pyrimidine biosynthesis


Pssm-ID: 440270 [Multi-domain]  Cd Length: 535  Bit Score: 884.73  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   1 MKYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
Cdd:COG0504     1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  81 TLTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAvvpvdgKEGAADVCVIELGGTIGDIESSPFV 160
Cdd:COG0504    81 NLSKANNVTTGQIYSSVIEKERRGDYLGKTVQVIPHITDEIKRRIRRAA------EESGADVVIVEIGGTVGDIESLPFL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 161 EALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGH 240
Cdd:COG0504   155 EAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEIKRKIALFCNVPEEA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 241 ILSIHDVSNIWHVPLLLRDQNVHLAILKKLNLsSAPQPELSEWTQRAERSDALSIPVKIGMVGKYTGLSDSYLSVLKALT 320
Cdd:COG0504   235 VISAPDVDSIYEVPLMLHEQGLDEIVLKKLGL-EAREPDLSEWEELVERIKNPKKEVTIALVGKYVELPDAYKSVVEALK 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 321 HASLACGRKLVIEWVASTDLEDGSPRDLhdaawaaLKSVDGILVPGGFGDRGTQGKVLAAKYARENNVPYLGVCLGMQIA 400
Cdd:COG0504   314 HAGIANGVKVNIKWIDSEDLEEENAEEL-------LKGVDGILVPGGFGERGIEGKIAAIRYARENKIPFLGICLGMQLA 386
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 401 VIEFARSVLGLDGANSTEFDPATPHPCVLYMPE-ISRTHKGGTMRLGVRRTFFqKPNCLTSKLYGNESfVDERHRHRYEV 479
Cdd:COG0504   387 VIEFARNVLGLEDANSTEFDPNTPHPVIDLMPEqKDVSDLGGTMRLGAYPCKL-KPGTLAAEAYGKEE-ISERHRHRYEF 464
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1376929165 480 NPELVDRLEEAGLTFVGKDETGRRMEIVELPEHKYFVGVQFHPEFKSRPGKPSPVFLGLILAASKQ 545
Cdd:COG0504   465 NNEYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPNRPHPLFRGFVKAALEY 530
PyrG TIGR00337
CTP synthase; CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. ...
1-541 0e+00

CTP synthase; CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7). [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]


Pssm-ID: 273021 [Multi-domain]  Cd Length: 525  Bit Score: 832.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   1 MKYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDV 80
Cdd:TIGR00337   1 MKYIFVTGGVVSSLGKGITAASLGRLLKARGLNVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYERFLDT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  81 TLTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAvvpvdgKEGAADVCVIELGGTIGDIESSPFV 160
Cdd:TIGR00337  81 NLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRILRVA------KISGPDVVIVEIGGTVGDIESLPFL 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 161 EALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGH 240
Cdd:TIGR00337 155 EAIRQFRVEVGRENVLFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSRPLDPNTKDKIALFCDVEEEA 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 241 ILSIHDVSNIWHVPLLLRDQNVHLAILKKLNLsSAPQPELSEWTQRAERSDALSIPVKIGMVGKYTGLSDSYLSVLKALT 320
Cdd:TIGR00337 235 VISAKDVSSIYEVPLLLLKQGLDDYLCRRLNL-NCDEADLSEWEQLVEKFANPKHEVTIGIVGKYVELKDAYLSVIEALK 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 321 HASLACGRKLVIEWVASTDLEDGSPRDlhdaawaaLKSVDGILVPGGFGDRGTQGKVLAAKYARENNVPYLGVCLGMQIA 400
Cdd:TIGR00337 314 HAGAKLDTKVNIKWIDSEDLEEEGVEF--------LKGLDGILVPGGFGERGVEGKILAIKYARENNIPFLGICLGMQLA 385
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 401 VIEFARSVLGLDGANSTEFDPATPHPCVLYMPEISR-THKGGTMRLGVRRTFFQkPNCLTSKLYGNESfVDERHRHRYEV 479
Cdd:TIGR00337 386 VIEFARNVAGLEGANSTEFDPDTKYPVVDLLPEQKDiSDLGGTMRLGLYPCILK-PGTLAFKLYGKEE-VYERHRHRYEV 463
                         490       500       510       520       530       540
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1376929165 480 NPELVDRLEEAGLTFVGKDETGRRMEIVELPEHKYFVGVQFHPEFKSRPGKPSPVFLGLILA 541
Cdd:TIGR00337 464 NNEYREQIENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNDPHPLFLGFVKA 525
CTP_synth_N pfam06418
CTP synthase N-terminus; This family consists of the N-terminal region of the CTP synthase ...
2-272 0e+00

CTP synthase N-terminus; This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyzes the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position.


Pssm-ID: 461903  Cd Length: 265  Bit Score: 540.78  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   2 KYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVT 81
Cdd:pfam06418   1 KYIFVTGGVVSGLGKGITAASLGRLLKSRGLKVTIIKIDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDIN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  82 LTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAvvpvdgKEGAADVCVIELGGTIGDIESSPFVE 161
Cdd:pfam06418  81 LTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVA------KEVGPDVVIVEIGGTVGDIESLPFLE 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 162 ALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGHI 241
Cdd:pfam06418 155 AIRQLRLEVGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDIIVCRSERPLDEEVKEKIALFCNVPKEAV 234
                         250       260       270
                  ....*....|....*....|....*....|.
gi 1376929165 242 LSIHDVSNIWHVPLLLRDQNVHLAILKKLNL 272
Cdd:pfam06418 235 ISAPDVSSIYEVPLLLEEQGLDDIILKRLNL 265
CTPS_N cd03113
N-terminal domain of cytidine 5'-triphosphate synthase; Cytidine 5'-triphosphate synthase ...
2-268 0e+00

N-terminal domain of cytidine 5'-triphosphate synthase; Cytidine 5'-triphosphate synthase (CTPS) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product.


Pssm-ID: 349767  Cd Length: 261  Bit Score: 526.28  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165   2 KYVIVTGGVVSGLGKGVTASSIGVVLQSCGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVT 81
Cdd:cd03113     1 KYIFVTGGVVSGLGKGITASSIGRLLKSRGLRVTAIKIDPYLNVDAGTMSPYEHGEVFVLDDGGETDLDLGNYERFLDVN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165  82 LTKNNNITTGKIYQSVIDAERRGDYLGKTVQVVPHITVEIQEWIERVAVVPVdgkegaADVCVIELGGTIGDIESSPFVE 161
Cdd:cd03113    81 LTRDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAKIPE------PDVCIVEIGGTVGDIESLPFLE 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 162 ALRQFQFRVGQENFCLVHVSLIPVLGVVGEQKTKPTQHSVQALRALGLTPDLLGCRSAKPLEQCTREKLSQFCHVPAGHI 241
Cdd:cd03113   155 ALRQFQFEVGRENFLFIHVTLVPYLEATGEQKTKPTQHSVKELRSLGIQPDIIVCRSEKPLDEETKEKIALFCNVPPEAV 234
                         250       260
                  ....*....|....*....|....*..
gi 1376929165 242 LSIHDVSNIWHVPLLLRDQNVHLAILK 268
Cdd:cd03113   235 ISVHDVSSIYEVPLLLEKQGLDDYILR 261
GATase1_CTP_Synthase cd01746
Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; ...
297-539 3.64e-141

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase; Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.


Pssm-ID: 153217 [Multi-domain]  Cd Length: 235  Bit Score: 410.41  E-value: 3.64e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 297 VKIGMVGKYTGLSDSYLSVLKALTHASLACGRKLVIEWVASTDLEDgsprdlhDAAWAALKSVDGILVPGGFGDRGTQGK 376
Cdd:cd01746     1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEE-------ENAEEALKGADGILVPGGFGIRGVEGK 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 377 VLAAKYARENNVPYLGVCLGMQIAVIEFARSVLGLDGANSTEFDPATPHPCVLYMPE-ISRTHKGGTMRLGVRRTFFqKP 455
Cdd:cd01746    74 ILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEqKGVKDLGGTMRLGAYPVIL-KP 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 456 NCLTSKLYGNESfVDERHRHRYEVNPELVDRLEEAGLTFVGKDETGRRMEIVELPEHKYFVGVQFHPEFKSRPGKPSPVF 535
Cdd:cd01746   153 GTLAHKYYGKDE-VEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLF 231

                  ....
gi 1376929165 536 LGLI 539
Cdd:cd01746   232 VGFV 235
GATase pfam00117
Glutamine amidotransferase class-I;
310-541 5.11e-44

Glutamine amidotransferase class-I;


Pssm-ID: 395067 [Multi-domain]  Cd Length: 188  Bit Score: 155.86  E-value: 5.11e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 310 DSYLSVLKALTHASLACGRKLVIEWVASTDLEDGSprdlhdaawaalKSVDGILVPGGFGDRGT-QGKVLAAKYARENNV 388
Cdd:pfam00117   4 DNGDSFTYNLARALRELGVEVTVVPNDTPAEEILE------------ENPDGIILSGGPGSPGAaGGAIEAIREARELKI 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 389 PYLGVCLGMQIAVIEFARSVLgldganstefdpatphpcvlymPEISRTHKGGTMRLGVRRtffqkpnclTSKLYGNESF 468
Cdd:pfam00117  72 PILGICLGHQLLALAFGGKVV----------------------KAKKFGHHGKNSPVGDDG---------CGLFYGLPNV 120
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1376929165 469 VDERHRHRYEVNPElvdrLEEAGLTFVGKDETG-RRMEIVElpEHKYFVGVQFHPEFKSRPGKPSPVFLGLILA 541
Cdd:pfam00117 121 FIVRRYHSYAVDPD----TLPDGLEVTATSENDgTIMGIRH--KKLPIFGVQFHPESILTPHGPEILFNFFIKA 188
PRK06186 PRK06186
hypothetical protein; Validated
296-545 2.52e-39

hypothetical protein; Validated


Pssm-ID: 180452 [Multi-domain]  Cd Length: 229  Bit Score: 144.34  E-value: 2.52e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 296 PVKIGMVGKYTGLSDSYLSVLKALTHASLACGRKLVIEWVASTDLEDGSPRDLHDAAWaalksvdgiLVPGGfGDRGTQG 375
Cdd:PRK06186    1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDPEDLAGFDGIW---------CVPGS-PYRNDDG 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 376 KVLAAKYARENNVPYLGVCLGMQIAVIEFARSVLGLDGANSTEFDPA------TPHPCVLympeisrTHKGGTMRLGvrr 449
Cdd:PRK06186   71 ALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEgdrpviAPLSCSL-------VEKTGDIRLR--- 140
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 450 tffqkPNCLTSKLYGNESfVDERHRHRYEVNPELVDRLEEAGLTFVGKDETGrrmEI--VELPEHKYFVGVQFHPEFKSR 527
Cdd:PRK06186  141 -----PGSLIARAYGTLE-IEEGYHCRYGVNPEFVAALESGDLRVTGWDEDG---DVraVELPGHPFFVATLFQPERAAL 211
                         250
                  ....*....|....*...
gi 1376929165 528 PGKPSPVFLGLILAASKQ 545
Cdd:PRK06186  212 AGRPPPLVRAFLRAARAA 229
GATase1 cd01653
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
299-402 3.62e-09

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.


Pssm-ID: 153210 [Multi-domain]  Cd Length: 115  Bit Score: 54.91  E-value: 3.62e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 299 IGMVGKYTGLSDSYLSVLKALTHASLAcgrklvIEWVASTDLEDGSPRDLHDAawaalksvDGILVPGGFGDRGT----Q 374
Cdd:cd01653     1 VAVLLFPGFEELELASPLDALREAGAE------VDVVSPDGGPVESDVDLDDY--------DGLILPGGPGTPDDlardE 66
                          90       100
                  ....*....|....*....|....*...
gi 1376929165 375 GKVLAAKYARENNVPYLGVCLGMQIAVI 402
Cdd:cd01653    67 ALLALLREAAAAGKPILGICLGAQLLVL 94
GAT_1 cd03128
Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase ...
299-399 1.19e-07

Type 1 glutamine amidotransferase (GATase1)-like domain; Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase (CPSase), cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. For Pyrococcus horikoshii PH1704, the Cys of the nucleophile elbow together with a different His and, a Glu from an adjacent monomer form a catalytic triad different from the typical GATase1 triad. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad of typical GATase1 domains, by having a Ser in place of the reactive Cys at the nucleophile elbow. The E. coli HP-II C-terminal domain, S. meliloti Rm1021 ThuA and the A4 beta-galactosidase middle domain lack the catalytic triad typical GATaseI domains. GATase1-like domains can occur either as single polypeptides, as in Class I glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase. Peptidase E has a circular permutation in the common core of a typical GTAse1 domain.


Pssm-ID: 153222 [Multi-domain]  Cd Length: 92  Bit Score: 49.89  E-value: 1.19e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 299 IGMVGKYTGLSDSYLSVLKALTHASLAcgrklvIEWVASTDLEDGSPRDLHDAawaalksvDGILVPGGFGD----RGTQ 374
Cdd:cd03128     1 VAVLLFGGSEELELASPLDALREAGAE------VDVVSPDGGPVESDVDLDDY--------DGLILPGGPGTpddlAWDE 66
                          90       100
                  ....*....|....*....|....*
gi 1376929165 375 GKVLAAKYARENNVPYLGVCLGMQI 399
Cdd:cd03128    67 ALLALLREAAAAGKPVLGICLGAQL 91
PuuD COG2071
Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD (putrescine degradation), contains ...
345-544 1.28e-07

Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD (putrescine degradation), contains GATase1-like domain [Amino acid transport and metabolism];


Pssm-ID: 441674 [Multi-domain]  Cd Length: 231  Bit Score: 52.86  E-value: 1.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 345 PRDLHDAAWAALKSVDGILVPGG-------FGDRGTQGKV----------LA-AKYARENNVPYLGVCLGMQ-IAViefa 405
Cdd:COG2071    36 PVGDEEDLDELLDRLDGLVLTGGadvdpalYGEEPHPELGpidperdafeLAlIRAALERGKPVLGICRGMQlLNV---- 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 406 rsVLG--LDGANSTEFDPATPHpcVLYMPEISRTHkggTMRLgvrrtffqKPNCLTSKLYGNESF-VDERHRhryevnpE 482
Cdd:COG2071   112 --ALGgtLYQDLPDQVPGALDH--RQPAPRYAPRH---TVEI--------EPGSRLARILGEEEIrVNSLHH-------Q 169
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1376929165 483 LVDRLEEaGLTFVGKDETGrrmeIVE---LPEHKYFVGVQFHPEFKSRPGKPS-PVFLGLILAASK 544
Cdd:COG2071   170 AVKRLGP-GLRVSARAPDG----VIEaieSPGAPFVLGVQWHPEWLAASDPLSrRLFEAFVEAARA 230
Peptidase_C26 pfam07722
Peptidase C26; These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze ...
354-523 3.89e-06

Peptidase C26; These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C terminus.


Pssm-ID: 429620 [Multi-domain]  Cd Length: 219  Bit Score: 48.41  E-value: 3.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 354 AALKSVDGILVPGG-------FGDRGTQG-------------KVLAAKYARenNVPYLGVCLGMQIAVIEFARSvLGLDg 413
Cdd:pfam07722  54 AILDRLDGLLLTGGpnvdphfYGEEPSESggpydpardayelALIRAALAR--GKPILGICRGFQLLNVALGGT-LYQD- 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 414 anstefdpatphpcvLYMPEISRTHKGGTMRLGV--RRTFFQKPNCLTSKLYGNESF-VDERHRhryevnpELVDRLEEa 490
Cdd:pfam07722 130 ---------------IQEQPGFTDHREHCQVAPYapSHAVNVEPGSLLASLLGSEEFrVNSLHH-------QAIDRLAP- 186
                         170       180       190
                  ....*....|....*....|....*....|....
gi 1376929165 491 GLTFVGKDETGRrMEIVELPEHKYFV-GVQFHPE 523
Cdd:pfam07722 187 GLRVEAVAPDGT-IEAIESPNAKGFAlGVQWHPE 219
IMP_synth_hisH TIGR01855
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; This model ...
355-530 2.14e-05

imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6. [Amino acid biosynthesis, Histidine family]


Pssm-ID: 273836 [Multi-domain]  Cd Length: 196  Bit Score: 45.78  E-value: 2.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 355 ALKSVDGILVPG--GFGDrgtqgkvlAAKYARENNV------------PYLGVCLGMQIAvieFARSV-------LGLDG 413
Cdd:TIGR01855  33 EAELADKLILPGvgAFGA--------AMARLRENGLdlfvelvvrlgkPVLGICLGMQLL---FERSEegggvpgLGLIK 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 414 ANSTEFDPAT-PHpcvlympeisrthkggtmrLGVRRTFFQKPNCLTSKLYGNES--FVderhrHRYEVNPElvdrlEEA 490
Cdd:TIGR01855 102 GNVVKLEARKvPH-------------------MGWNEVHPVKESPLLNGIDEGAYfyFV-----HSYYAVCE-----EEA 152
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1376929165 491 GLTFvgkdeTGRRMEIVELPEHKYFVGVQFHPEFKSRPGK 530
Cdd:TIGR01855 153 VLAY-----ADYGEKFPAAVQKGNIFGTQFHPEKSGKTGL 187
hisH PRK13146
imidazole glycerol phosphate synthase subunit HisH; Provisional
314-431 3.93e-05

imidazole glycerol phosphate synthase subunit HisH; Provisional


Pssm-ID: 237290 [Multi-domain]  Cd Length: 209  Bit Score: 45.16  E-value: 3.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 314 SVLKALTHAslACGRKLVIewvasTDledgsprDLHDAAWAalksvDGILVPG---------GFGDRGTQGKVLAAkyAR 384
Cdd:PRK13146   16 SAAKALERA--GAGADVVV-----TA-------DPDAVAAA-----DRVVLPGvgafadcmrGLRAVGLGEAVIEA--VL 74
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1376929165 385 ENNVPYLGVCLGMQIAvieFARSV-------LGLDGANSTEFDPATPHPCVLYM 431
Cdd:PRK13146   75 AAGRPFLGICVGMQLL---FERGLehgdtpgLGLIPGEVVRFQPDGPALKVPHM 125
GATase1_Glutamyl_Hydrolase cd01747
Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase; Type 1 ...
356-523 5.22e-04

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase; Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.


Pssm-ID: 153218 [Multi-domain]  Cd Length: 273  Bit Score: 42.31  E-value: 5.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 356 LKSVDGILVPGGFGDRGTQGKVLAAK----YARENN-----VPYLGVCLGMQIAVIEFARSVLGLDGANSTEFdpATPhp 426
Cdd:cd01747    52 FKSINGILFPGGAVDIDTSGYARTAKiiynLALERNdagdyFPVWGTCLGFELLTYLTSGETLLLEATEATNS--ALP-- 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 427 cvLYMPEISRthkggtmrlgVRRTFFQKPNCLTSKLyGNESFVdeRHRHRYEVNPElvdRLEEAGLT--F-----VGKDE 499
Cdd:cd01747   128 --LNFTEDAL----------QSRLFKRFPPDLLKSL-ATEPLT--MNNHRYGISPE---NFTENGLLsdFfnvltTNDDW 189
                         170       180
                  ....*....|....*....|....*.
gi 1376929165 500 TGrrMEIVELPEH-KY-FVGVQFHPE 523
Cdd:cd01747   190 NG--VEFISTVEAyKYpIYGVQWHPE 213
hisH PRK13143
imidazole glycerol phosphate synthase subunit HisH; Provisional
314-530 8.90e-04

imidazole glycerol phosphate synthase subunit HisH; Provisional


Pssm-ID: 237289 [Multi-domain]  Cd Length: 200  Bit Score: 41.01  E-value: 8.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 314 SVLKALTHAslacGRKLVIewvaSTDLEDgsprdlhdaawaaLKSVDGILVPG--GFGD-----RGTQGKVLAAkyaREN 386
Cdd:PRK13143   15 SVSKALERA----GAEVVI----TSDPEE-------------ILDADGIVLPGvgAFGAamenlSPLRDVILEA---ARS 70
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 387 NVPYLGVCLGMQIAvieFARS-----VLGLD---GANsTEFDPA--TPHpcvlympeisrthkggtmrLGVRRTFFQKPN 456
Cdd:PRK13143   71 GKPFLGICLGMQLL---FESSeegggVRGLGlfpGRV-VRFPAGvkVPH-------------------MGWNTVKVVKDC 127
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1376929165 457 CLTSKLygNES---FVderhrHRYEVNPELVDRleeagltFVGKDETGRRMEIVELPEHKYfvGVQFHPEFKSRPGK 530
Cdd:PRK13143  128 PLFEGI--DGEyvyFV-----HSYYAYPDDEDY-------VVATTDYGIEFPAAVCNDNVF--GTQFHPEKSGETGL 188
GATase1_2 cd01745
Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; This group ...
356-524 6.69e-03

Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain; This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.


Pssm-ID: 153216 [Multi-domain]  Cd Length: 189  Bit Score: 38.33  E-value: 6.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 356 LKSVDGILVPGG--------FGDRGTQGKVLA----------AKYARENNVPYLGVCLGMQ-IAViefarsvlgldgans 416
Cdd:cd01745    51 LELLDGLLLTGGgdvdpplyGEEPHPELGPIDperdafelalLRAALERGKPILGICRGMQlLNV--------------- 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376929165 417 tefdpatphpcvlympeisrtHKGGTMR--LGVrrtffqkpNCLtsklygnesfvderhrHRYevnpeLVDRLEEaGLTF 494
Cdd:cd01745   116 ---------------------ALGGTLYqdIRV--------NSL----------------HHQ-----AIKRLAD-GLRV 144
                         170       180       190
                  ....*....|....*....|....*....|
gi 1376929165 495 VGKDETGRrMEIVELPEHKYFVGVQFHPEF 524
Cdd:cd01745   145 EARAPDGV-IEAIESPDRPFVLGVQWHPEW 173
guaA_Nterm TIGR00888
GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit; This protein of purine ...
349-423 7.45e-03

GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit; This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]


Pssm-ID: 129966 [Multi-domain]  Cd Length: 188  Bit Score: 38.06  E-value: 7.45e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1376929165 349 HDAAWAALKSVD--GILVPGGFGDRGTQGKVLAAKYARENNVPYLGVCLGMQIAVIEFARSVlglDGANSTEFDPAT 423
Cdd:TIGR00888  30 NTTPLEEIREKNpkGIILSGGPSSVYAENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEV---GRAEKREYGKAE 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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