predicted protein [Micromonas commoda]
PLN00208 family protein( domain architecture ID 10010700)
PLN00208 family protein
List of domain hits
Name | Accession | Description | Interval | E-value | |||
PLN00208 | PLN00208 | translation initiation factor (eIF); Provisional |
12-128 | 3.17e-67 | |||
translation initiation factor (eIF); Provisional : Pssm-ID: 177798 Cd Length: 145 Bit Score: 200.02 E-value: 3.17e-67
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Name | Accession | Description | Interval | E-value | |||
PLN00208 | PLN00208 | translation initiation factor (eIF); Provisional |
12-128 | 3.17e-67 | |||
translation initiation factor (eIF); Provisional Pssm-ID: 177798 Cd Length: 145 Bit Score: 200.02 E-value: 3.17e-67
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S1_IF1A | cd05793 | S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A ... |
33-109 | 1.16e-41 | |||
S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea. Pssm-ID: 240219 Cd Length: 77 Bit Score: 133.03 E-value: 1.16e-41
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eIF1a | smart00652 | eukaryotic translation initiation factor 1A; |
28-110 | 8.14e-41 | |||
eukaryotic translation initiation factor 1A; Pssm-ID: 128900 Cd Length: 83 Bit Score: 130.83 E-value: 8.14e-41
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eIF-1A | TIGR00523 | eukaryotic/archaeal initiation factor 1A; Recommended nomenclature: eIF-1A for eukaryotes, ... |
15-111 | 6.11e-34 | |||
eukaryotic/archaeal initiation factor 1A; Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C [Protein synthesis, Translation factors] Pssm-ID: 273118 Cd Length: 98 Bit Score: 114.19 E-value: 6.11e-34
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eIF-1a | pfam01176 | Translation initiation factor 1A / IF-1; This family includes both the eukaryotic translation ... |
33-94 | 2.03e-24 | |||
Translation initiation factor 1A / IF-1; This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. Pssm-ID: 460099 Cd Length: 62 Bit Score: 88.60 E-value: 2.03e-24
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InfA | COG0361 | Translation initiation factor IF-1 [Translation, ribosomal structure and biogenesis]; ... |
29-95 | 4.11e-18 | |||
Translation initiation factor IF-1 [Translation, ribosomal structure and biogenesis]; Translation initiation factor IF-1 is part of the Pathway/BioSystem: Translation factors Pssm-ID: 440130 Cd Length: 73 Bit Score: 72.83 E-value: 4.11e-18
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Name | Accession | Description | Interval | E-value | |||
PLN00208 | PLN00208 | translation initiation factor (eIF); Provisional |
12-128 | 3.17e-67 | |||
translation initiation factor (eIF); Provisional Pssm-ID: 177798 Cd Length: 145 Bit Score: 200.02 E-value: 3.17e-67
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PTZ00329 | PTZ00329 | eukaryotic translation initiation factor 1A; Provisional |
12-126 | 2.13e-66 | |||
eukaryotic translation initiation factor 1A; Provisional Pssm-ID: 185558 Cd Length: 155 Bit Score: 198.11 E-value: 2.13e-66
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S1_IF1A | cd05793 | S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A ... |
33-109 | 1.16e-41 | |||
S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea. Pssm-ID: 240219 Cd Length: 77 Bit Score: 133.03 E-value: 1.16e-41
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eIF1a | smart00652 | eukaryotic translation initiation factor 1A; |
28-110 | 8.14e-41 | |||
eukaryotic translation initiation factor 1A; Pssm-ID: 128900 Cd Length: 83 Bit Score: 130.83 E-value: 8.14e-41
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eIF-1A | TIGR00523 | eukaryotic/archaeal initiation factor 1A; Recommended nomenclature: eIF-1A for eukaryotes, ... |
15-111 | 6.11e-34 | |||
eukaryotic/archaeal initiation factor 1A; Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C [Protein synthesis, Translation factors] Pssm-ID: 273118 Cd Length: 98 Bit Score: 114.19 E-value: 6.11e-34
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S1_IF1A_like | cd04456 | S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is ... |
33-109 | 8.76e-33 | |||
S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea. Pssm-ID: 239903 Cd Length: 78 Bit Score: 110.72 E-value: 8.76e-33
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PRK04012 | PRK04012 | translation initiation factor IF-1A; Provisional |
12-111 | 9.09e-27 | |||
translation initiation factor IF-1A; Provisional Pssm-ID: 179708 Cd Length: 100 Bit Score: 95.79 E-value: 9.09e-27
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eIF-1a | pfam01176 | Translation initiation factor 1A / IF-1; This family includes both the eukaryotic translation ... |
33-94 | 2.03e-24 | |||
Translation initiation factor 1A / IF-1; This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. Pssm-ID: 460099 Cd Length: 62 Bit Score: 88.60 E-value: 2.03e-24
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InfA | COG0361 | Translation initiation factor IF-1 [Translation, ribosomal structure and biogenesis]; ... |
29-95 | 4.11e-18 | |||
Translation initiation factor IF-1 [Translation, ribosomal structure and biogenesis]; Translation initiation factor IF-1 is part of the Pathway/BioSystem: Translation factors Pssm-ID: 440130 Cd Length: 73 Bit Score: 72.83 E-value: 4.11e-18
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S1_eIF1AD_like | cd05792 | S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD) ... |
33-78 | 8.90e-03 | |||
S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. Pssm-ID: 240218 Cd Length: 78 Bit Score: 33.17 E-value: 8.90e-03
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Blast search parameters | ||||
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