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Conserved domains on  [gi|242040131|ref|XP_002467460|]
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NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 [Sorghum bicolor]

Protein Classification

Mth938-like domain-containing protein( domain architecture ID 10142263)

Mth938-like domain-containing protein similar to human NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3, an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Mth938_2P1-like cd05125
Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially ...
 84-195 4.69e-45

Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.


:

Pssm-ID: 240161  Cd Length: 114  Bit Score: 145.04  E-value: 4.69e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242040131  84 LRFQSYDDTGFKINNVKYEGSLLIVENKIMTWAPKTFSEITAESLSIFKVVHPIPEILILGCGRHIQLVSPELRKFIRST 163
Cdd:cd05125    1 NYIDAYSENGFRLNNNKVIGSGAILPKEVFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKL 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 242040131 164 GMKLEAVDSRNAASTYNILNEEGRPVAAAVLP 195
Cdd:cd05125   81 GIAVEVVDTRNACATFNFLAEEGRRVAAALIP 112
 
Name Accession Description Interval E-value
Mth938_2P1-like cd05125
Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially ...
 84-195 4.69e-45

Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.


Pssm-ID: 240161  Cd Length: 114  Bit Score: 145.04  E-value: 4.69e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242040131  84 LRFQSYDDTGFKINNVKYEGSLLIVENKIMTWAPKTFSEITAESLSIFKVVHPIPEILILGCGRHIQLVSPELRKFIRST 163
Cdd:cd05125    1 NYIDAYSENGFRLNNNKVIGSGAILPKEVFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKL 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 242040131 164 GMKLEAVDSRNAASTYNILNEEGRPVAAAVLP 195
Cdd:cd05125   81 GIAVEVVDTRNACATFNFLAEEGRRVAAALIP 112
DUF498 pfam04430
Protein of unknown function (DUF498/DUF598); This is a large family of uncharacterized ...
 86-194 3.46e-39

Protein of unknown function (DUF498/DUF598); This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid.


Pssm-ID: 461305  Cd Length: 106  Bit Score: 129.95  E-value: 3.46e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242040131   86 FQSYDDTGFKINNVKYEGSLLIVENKIMTWAPKTFSEITAESLSIFkvvHPIPEILILGCGRHIQLVSPELRKFIRSTGM 165
Cdd:pfam04430   1 IDGYGFGGFRVNGVRYRGSLLVLPGGVFAWDVTKGEDLTPEDLALL---LADPEVLIIGTGARVLFLPPELREALRKRGI 77

                          90       100
                  ....*....|....*....|....*....
gi 242040131  166 KLEAVDSRNAASTYNILNEEGRPVAAAVL 194
Cdd:pfam04430  78 GVEVMDTRAACRTYNVLASEGRRVAAALI 106
COG3737 COG3737
Uncharacterized protein, contains Mth938-like domain [Function unknown];
86-194 3.71e-27

Uncharacterized protein, contains Mth938-like domain [Function unknown];


Pssm-ID: 442951  Cd Length: 121  Bit Score: 99.45  E-value: 3.71e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242040131  86 FQSYDDTGFKINNVKYEGSLLI-VENKIMTWAPKTFSEITAESLSifkvvhPI----PEILILGCGRHIQLVSPELRKFI 160
Cdd:COG3737   14 ITAYGDGGFRINGMRYRGSLLVlPDGLVEDWPVTSFEDLTAAHLE------PLlalkPEVVLLGTGARQRFPPPALLAAL 87

                         90       100       110
                 ....*....|....*....|....*....|....
gi 242040131 161 RSTGMKLEAVDSRNAASTYNILNEEGRPVAAAVL 194
Cdd:COG3737   88 REAGIGVEVMDTGAACRTYNILLAEGRRVAAALI 121
 
Name Accession Description Interval E-value
Mth938_2P1-like cd05125
Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially ...
 84-195 4.69e-45

Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.


Pssm-ID: 240161  Cd Length: 114  Bit Score: 145.04  E-value: 4.69e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242040131  84 LRFQSYDDTGFKINNVKYEGSLLIVENKIMTWAPKTFSEITAESLSIFKVVHPIPEILILGCGRHIQLVSPELRKFIRST 163
Cdd:cd05125    1 NYIDAYSENGFRLNNNKVIGSGAILPKEVFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKL 80

                         90       100       110
                 ....*....|....*....|....*....|..
gi 242040131 164 GMKLEAVDSRNAASTYNILNEEGRPVAAAVLP 195
Cdd:cd05125   81 GIAVEVVDTRNACATFNFLAEEGRRVAAALIP 112
DUF498 pfam04430
Protein of unknown function (DUF498/DUF598); This is a large family of uncharacterized ...
 86-194 3.46e-39

Protein of unknown function (DUF498/DUF598); This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid.


Pssm-ID: 461305  Cd Length: 106  Bit Score: 129.95  E-value: 3.46e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242040131   86 FQSYDDTGFKINNVKYEGSLLIVENKIMTWAPKTFSEITAESLSIFkvvHPIPEILILGCGRHIQLVSPELRKFIRSTGM 165
Cdd:pfam04430   1 IDGYGFGGFRVNGVRYRGSLLVLPGGVFAWDVTKGEDLTPEDLALL---LADPEVLIIGTGARVLFLPPELREALRKRGI 77

                          90       100
                  ....*....|....*....|....*....
gi 242040131  166 KLEAVDSRNAASTYNILNEEGRPVAAAVL 194
Cdd:pfam04430  78 GVEVMDTRAACRTYNVLASEGRRVAAALI 106
COG3737 COG3737
Uncharacterized protein, contains Mth938-like domain [Function unknown];
86-194 3.71e-27

Uncharacterized protein, contains Mth938-like domain [Function unknown];


Pssm-ID: 442951  Cd Length: 121  Bit Score: 99.45  E-value: 3.71e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242040131  86 FQSYDDTGFKINNVKYEGSLLI-VENKIMTWAPKTFSEITAESLSifkvvhPI----PEILILGCGRHIQLVSPELRKFI 160
Cdd:COG3737   14 ITAYGDGGFRINGMRYRGSLLVlPDGLVEDWPVTSFEDLTAAHLE------PLlalkPEVVLLGTGARQRFPPPALLAAL 87

                         90       100       110
                 ....*....|....*....|....*....|....
gi 242040131 161 RSTGMKLEAVDSRNAASTYNILNEEGRPVAAAVL 194
Cdd:COG3737   88 REAGIGVEVMDTGAACRTYNILLAEGRRVAAALI 121
Mth938-like cd00248
Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and ...
 86-194 5.22e-24

Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.


Pssm-ID: 238152  Cd Length: 109  Bit Score: 91.15  E-value: 5.22e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242040131  86 FQSYDDTGFKINNVKYEGSLLIVENKIMTWAPKTFSEITAESLSIFkVVHPIPEILILGCGRHIQLVSPELRKFIRSTGM 165
Cdd:cd00248    2 IDGYGPGGFRIAGQVYRGPLLVLPDGVVPWDGTSLSDLDPEALLPL-LAEDRPDILLIGTGAEIAFLPRALRAALRAAGI 80

                         90       100
                 ....*....|....*....|....*....
gi 242040131 166 KLEAVDSRNAASTYNILNEEGRPVAAAVL 194
Cdd:cd00248   81 GVEVMSTGAACRTYNVLLSEGRRVAAALI 109
Xcc1710_like cd05560
Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from ...
 85-194 2.33e-23

Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.


Pssm-ID: 240187  Cd Length: 109  Bit Score: 89.56  E-value: 2.33e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242040131  85 RFQSYDDTGFKINNVKYEGSLLIVENKIMT-WAPKTFSEITAESLsifkvvHPI----PEILILGCGRHIQLVSPELRKF 159
Cdd:cd05560    1 TITAYGDGYVEINDQRYEHSLIVTPDELITdWPVARFEDLTAAHF------EALlalqPEVILLGTGERQRFPPPALLAP 74

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 242040131 160 IRSTGMKLEAVDSRNAASTYNILNEEGRPVAAAVL 194
Cdd:cd05560   75 LLARGIGVEVMDTQAACRTYNILMGEGRRVVAALL 109
Mth938 cd05126
Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium ...
 90-191 3.75e-04

Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.


Pssm-ID: 240162  Cd Length: 117  Bit Score: 38.86  E-value: 3.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242040131  90 DDTGF---KINNVKYEGSLLIVENKIMTWAPKTFSEITAESLSIF-----KVVHPIPEILILGCGRHIQL-VSPELRKFI 160
Cdd:cd05126    3 ESTSFgsiTVGGETYEHDIVVYPDGSRARRWKELSKKTGTSHGLQpeeleELLEEGVEVIVIGTGQSGALkVPPETVEKL 82

                         90       100       110
                 ....*....|....*....|....*....|.
gi 242040131 161 RSTGMKLEAVDSRNAASTYNILNEEGRPVAA 191
Cdd:cd05126   83 EKRGVEVLVLPTEEAVKRYNELAGKGRRVLA 113
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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