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Conserved domains on  [gi|242058541|ref|XP_002458416|]
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uncharacterized protein LOC8069805 [Sorghum bicolor]

Protein Classification

NuoB/complex I 20 kDa subunit family protein( domain architecture ID 10012723)

NuoB/complex I 20 kDa subunit family protein such as bacterial NADH-quinone oxidoreductase subunit B (NuoB) and mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, which are both part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

CATH:  3.40.50.12280
EC:  1.6.5.9
Gene Ontology:  GO:0051539|GO:0008137|GO:0045271|GO:0048038|GO:0016655|GO:0005886
PubMed:  30277212|1470679|33957129|23417064|24059520
SCOP:  4007641

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
49-197 2.61e-111

NADH-quinone oxidoreductase subunit NuoB;


:

Pssm-ID: 235797  Cd Length: 183  Bit Score: 315.38  E-value: 2.61e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM 128
Cdd:PRK06411  20 VVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQM 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 242058541 129 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHW 197
Cdd:PRK06411 100 PEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKR 168
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
49-197 2.61e-111

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 315.38  E-value: 2.61e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM 128
Cdd:PRK06411  20 VVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQM 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 242058541 129 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHW 197
Cdd:PRK06411 100 PEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKR 168
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 51-200 2.60e-105

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 299.02  E-value: 2.60e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  51 VSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP 129
Cdd:COG0377    1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 242058541 130 EPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHWWTK 200
Cdd:COG0377   81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYG 151
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 49-191 3.58e-105

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 298.50  E-value: 3.58e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541   49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFG-VIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQ 127
Cdd:TIGR01957   2 VLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQ 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 242058541  128 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRR 191
Cdd:TIGR01957  82 MPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
76-184 1.06e-34

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 119.23  E-value: 1.06e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541   76 CAVEMMHAGASRYDF-----DRFGVIFRPSPR----QSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGY 146
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 242058541  147 YH----YSYSvVRGCDRIVPVDIYVPGCPPTAEALLYGVLQL 184
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
 
Name Accession Description Interval E-value
PRK06411 PRK06411
NADH-quinone oxidoreductase subunit NuoB;
49-197 2.61e-111

NADH-quinone oxidoreductase subunit NuoB;


Pssm-ID: 235797  Cd Length: 183  Bit Score: 315.38  E-value: 2.61e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM 128
Cdd:PRK06411  20 VVLTTLDDLVNWARKNSLWPLTFGLACCAIEMMAAGTSRYDLDRFGMVFRASPRQADLMIVAGTLTNKMAPALRRLYDQM 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 242058541 129 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHW 197
Cdd:PRK06411 100 PEPKWVISMGSCANSGGMYHYSYSVVQGVDRIVPVDVYVPGCPPRPEALLYGILKLQKKIRQSERERKR 168
NuoB COG0377
NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy ...
 51-200 2.60e-105

NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase [Energy production and conversion]; NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440146  Cd Length: 152  Bit Score: 299.02  E-value: 2.60e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  51 VSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP 129
Cdd:COG0377    1 LTTLDKLVNWARKNSLWPLTFGLACCAIEMMAAGASRYDLERFGAeVPRASPRQADLMIVAGTVTKKMAPVLRRLYEQMP 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 242058541 130 EPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHWWTK 200
Cdd:COG0377   81 EPKWVIAMGACAISGGPYWDSYSVVQGVDKIIPVDVYVPGCPPRPEALLDGILKLQEKIRRERLRGRKEYG 151
nuoB_fam TIGR01957
NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that ...
 49-191 3.58e-105

NADH-quinone oxidoreductase, B subunit; This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 273896  Cd Length: 145  Bit Score: 298.50  E-value: 3.58e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541   49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFG-VIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQ 127
Cdd:TIGR01957   2 VLLTTVDKLLNWGRSNSLWPLTFGLACCAIEMMATGASRYDLDRFGsEVFRASPRQADVMIVAGTVTKKMAPALRRLYDQ 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 242058541  128 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRR 191
Cdd:TIGR01957  82 MPEPKWVISMGACANSGGMFHTSYSVVQGVDRIVPVDVYIPGCPPRPEALIYGLIKLQKKIKRE 145
PRK14819 PRK14819
NADH-quinone oxidoreductase subunit B;
54-192 1.41e-70

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 237822  Cd Length: 264  Bit Score: 215.23  E-value: 1.41e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  54 VDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPR 132
Cdd:PRK14819  21 VNRFYNWGRRSSVWPMAFGLACCAIEMMATGLSRYDLARFGAeLFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPR 100

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541 133 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRK 192
Cdd:PRK14819 101 YVISMGACATSGGPFRDGYNVLRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQS 160
PRK14815 PRK14815
NADH dehydrogenase subunit B; Provisional
 48-194 8.04e-69

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 237821  Cd Length: 183  Bit Score: 207.83  E-value: 8.04e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  48 EFVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALRKVYD 126
Cdd:PRK14815  17 NVVVTTLDAAINWIRKNSLWPMPMGLACCAIELMAVACSRFDISRFGAeVMRFSPRQADVMIVAGTVTYKMALAVRRIYD 96

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 242058541 127 QMPEPRWVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDF 194
Cdd:PRK14815  97 QMPEPKWVIAMGACASSGGMYR-SYSVLQGVDRILPVDVYISGCPPRPEAILDALIKLQKKIDTERAA 163
PRK14818 PRK14818
NADH dehydrogenase subunit B; Provisional
 49-188 9.39e-69

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173279  Cd Length: 173  Bit Score: 207.50  E-value: 9.39e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQM 128
Cdd:PRK14818  16 LHTSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVAGTLTYKMAERARLLYDQM 95

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541 129 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 188
Cdd:PRK14818  96 PEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGCPPRPEALTEGLLRLQEIV 155
PRK14813 PRK14813
NADH dehydrogenase subunit B; Provisional
 50-188 7.25e-68

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173274  Cd Length: 189  Bit Score: 205.89  E-value: 7.25e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  50 VVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMP 129
Cdd:PRK14813  14 LVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRSSPRQSDLMIVAGTVTMKMAERVVRLYEQMP 93

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541 130 EPRWVISMGSCANGGG-YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 188
Cdd:PRK14813  94 EPRYVLSMGSCSNCGGpYWEHGYHVLKGVDRIIPVDVYVPGCPPRPEALIGGLMKVQELI 153
PRK14816 PRK14816
NADH-quinone oxidoreductase subunit B;
47-194 4.67e-66

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173277  Cd Length: 182  Bit Score: 200.91  E-value: 4.67e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  47 AEFVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPALRKVY 125
Cdd:PRK14816  24 ANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMARFGFeVARASPRQADMIMVCGTITNKMAPVLKRLY 103

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 242058541 126 DQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDF 194
Cdd:PRK14816 104 DQMADPKYVIAVGGCAVSGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEKFF 172
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
43-190 3.56e-65

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 213.87  E-value: 3.56e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  43 MSKTAEFVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGV-IFRPSPRQSDCMIVAGTLTNKMAPAL 121
Cdd:PRK13292   1 ETIPENILLASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAeVLRGTPREADLMVIAGTVFKKMAPSI 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 242058541 122 RKVYDQMPEPRWVISMGSCANGGGYYHYsYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINR 190
Cdd:PRK13292  81 LRLYEQMAEPKWVISMGSCANSGGMYDV-YSVVQGVNQILPVDVYIPGCPPRPEAFLQGLMLLQEKIRR 148
ndhK CHL00023
NADH dehydrogenase subunit K
 56-190 1.54e-61

NADH dehydrogenase subunit K


Pssm-ID: 214337  Cd Length: 225  Bit Score: 191.07  E-value: 1.54e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  56 DLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 135
Cdd:CHL00023  24 DLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 103

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 242058541 136 SMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINR 190
Cdd:CHL00023 104 AMGACTITGGMFSTdSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 159
PRK14820 PRK14820
NADH-quinone oxidoreductase subunit B;
49-191 3.65e-56

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 184833  Cd Length: 180  Bit Score: 175.79  E-value: 3.65e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIfRPS--PRQSDCMIVAGTLTNKMAPALRKVYD 126
Cdd:PRK14820  18 FFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASHYDLARFGSE-RPSfsPRQADMLMVMGTIAKKMAPVLKQVYL 96

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541 127 QMPEPRWVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQ-----KKINRR 191
Cdd:PRK14820  97 QMAEPRWVVAVGACASSGGIFD-TYSVLQGIDRIIPVDVYVPGCPPRPEQIIDGVMRVQelvknESLRRR 165
PRK14814 PRK14814
NADH dehydrogenase subunit B; Provisional
 49-188 7.04e-55

NADH dehydrogenase subunit B; Provisional


Pssm-ID: 173275  Cd Length: 186  Bit Score: 172.52  E-value: 7.04e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIfRPS--PRQSDCMIVAGTLTNKMAPALRKVYD 126
Cdd:PRK14814  18 FQLGNLESVIQWGRSFSLWPYPFATACCGIEYMSTACSDYDIARFGAE-RPSfsPRQADMILVLGTITYKMAPVLRQIYD 96

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 242058541 127 QMPEPRWVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 188
Cdd:PRK14814  97 QMAEPKFVISVGACASSGGMFH-TYGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQTKL 157
PRK14817 PRK14817
NADH-quinone oxidoreductase subunit B;
49-188 1.35e-53

NADH-quinone oxidoreductase subunit B;


Pssm-ID: 173278  Cd Length: 181  Bit Score: 169.37  E-value: 1.35e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  49 FVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIF-RPSPRQSDCMIVAGTLTNKMAPALRKVYDQ 127
Cdd:PRK14817  20 FLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMpRFSPRQADLLMVVGTVNCKQAPILQRVYEQ 99

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 242058541 128 MPEPRWVISMGSCANGGGYYHySYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 188
Cdd:PRK14817 100 MADPKWVMAFGVCASSGGFYD-NYATVQGIDRIIPVDVYVPGCPPRPEQVLDGIMLLQKKI 159
HycG COG3260
Ni,Fe-hydrogenase III small subunit [Energy production and conversion];
60-192 8.67e-52

Ni,Fe-hydrogenase III small subunit [Energy production and conversion];


Pssm-ID: 442491  Cd Length: 137  Bit Score: 163.04  E-value: 8.67e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  60 WARKGSIWPMTF--GlAC--CAVEMMHAGASRYDFDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 135
Cdd:COG3260    1 KVLGRSLWIRHVdaG-SCngCEIEILALLTPRYDLERFGIKFVASPRHADVLLVTGPVTRNMREALLRTYEAMPEPKVVV 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 242058541 136 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRK 192
Cdd:COG3260   80 AVGDCACSGGVFRDSYAVLGGVDKVIPVDVYIPGCPPRPEAILDGLLKALGRLEEKL 136
Oxidored_q6 pfam01058
NADH ubiquinone oxidoreductase, 20 Kd subunit;
76-184 1.06e-34

NADH ubiquinone oxidoreductase, 20 Kd subunit;


Pssm-ID: 426021 [Multi-domain]  Cd Length: 124  Bit Score: 119.23  E-value: 1.06e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541   76 CAVEMMHAGASRYDF-----DRFGVIFRPSPR----QSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGY 146
Cdd:pfam01058   4 CTISLLALHPPLLDLldlisLRYGIPLMASPReipeGADVLLVEGAVTRKPKEALERLYEAAPKAKYVIAVGTCAAFGGI 83

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 242058541  147 YH----YSYSvVRGCDRIVPVDIYVPGCPPTAEALLYGVLQL 184
Cdd:pfam01058  84 PAagnnPSYG-VRPVLEVVPVDINIPGCPPHPEAILGTLLAL 124
FrhG COG1941
Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];
70-179 4.45e-06

Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion];


Pssm-ID: 441544 [Multi-domain]  Cd Length: 262  Bit Score: 45.69  E-value: 4.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242058541  70 TFGLACC-----AVEMMHAG----ASRYDFDRFGVI--FRPSPRQSDCMIVAGTLTNK----MAPALRKVYDQmpeprwV 134
Cdd:COG1941    8 TYWLAGCsgcqlSFLDLDERlldlLELVEIVYFPEAsdVKEIPEPVDVALVEGSIRNEeneeRLKEIREKSKI------L 81

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 242058541 135 ISMGSCANGGG----------------YYHYSYSV---------------VRGCDRIVPVDIYVPGCPPTAEALLY 179
Cdd:COG1941   82 VALGACAVTGGipalrnlydleellerVYGETPSTnpqipgeelpelldrVRPLSEVVKVDYELPGCPPDPDQILE 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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