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Conserved domains on  [gi|242010174|ref|XP_002425851|]
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uncharacterized protein Phum_PHUM222170 [Pediculus humanus corporis]

Protein Classification

TMEM138 domain-containing protein( domain architecture ID 10633085)

TMEM138 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TMEM138 pfam14935
Transmembrane protein 138; This family of proteins is found in eukaryotes and members are ...
 38-155 9.55e-50

Transmembrane protein 138; This family of proteins is found in eukaryotes and members are approximately 160 amino acids in length. There are two conserved sequence motifs: YYY and DPR. This transmembrane protein belongs to a family found in eukaryotes and is involved in the biogenesis and degradation of ciliated cells. Mutations in this protein cause the disease Joubert syndrome(JBTS) where the cilia becomes non-motile. Ciliopathy can be severe since cilia provide the cell with large amounts of information through signals. Ciliopathy can affect cell behaviour as the appropriate signals between the cell and its environment are not made, which can affect cell survival.


:

Pssm-ID: 434328  Cd Length: 119  Bit Score: 155.86  E-value: 9.55e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242010174   38 QLVAFIFQDVFIVISLTVTLIGFFSTYVFQAGLVELLFDRFRLAILISVFYFIITIILHAWLLTIRWNNPNNFNWTDGLT 117
Cdd:pfam14935   1 LLVLFIIQDVCLILSLIVLLLSFFSTYVFQAGLVHLLLRKFRLTLITSVLYFILSISLHVWTLNLRWNNPNVFIWPDGLQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 242010174  118 IFFSCQRMFSPIYYYSTKRAMLRISDPRFYQSLDWISR 155
Cdd:pfam14935  81 ALFVLQRLVSVLYYYFYKRTALRLSDPRFYEDSDWIRE 118
 
Name Accession Description Interval E-value
TMEM138 pfam14935
Transmembrane protein 138; This family of proteins is found in eukaryotes and members are ...
 38-155 9.55e-50

Transmembrane protein 138; This family of proteins is found in eukaryotes and members are approximately 160 amino acids in length. There are two conserved sequence motifs: YYY and DPR. This transmembrane protein belongs to a family found in eukaryotes and is involved in the biogenesis and degradation of ciliated cells. Mutations in this protein cause the disease Joubert syndrome(JBTS) where the cilia becomes non-motile. Ciliopathy can be severe since cilia provide the cell with large amounts of information through signals. Ciliopathy can affect cell behaviour as the appropriate signals between the cell and its environment are not made, which can affect cell survival.


Pssm-ID: 434328  Cd Length: 119  Bit Score: 155.86  E-value: 9.55e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242010174   38 QLVAFIFQDVFIVISLTVTLIGFFSTYVFQAGLVELLFDRFRLAILISVFYFIITIILHAWLLTIRWNNPNNFNWTDGLT 117
Cdd:pfam14935   1 LLVLFIIQDVCLILSLIVLLLSFFSTYVFQAGLVHLLLRKFRLTLITSVLYFILSISLHVWTLNLRWNNPNVFIWPDGLQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 242010174  118 IFFSCQRMFSPIYYYSTKRAMLRISDPRFYQSLDWISR 155
Cdd:pfam14935  81 ALFVLQRLVSVLYYYFYKRTALRLSDPRFYEDSDWIRE 118
 
Name Accession Description Interval E-value
TMEM138 pfam14935
Transmembrane protein 138; This family of proteins is found in eukaryotes and members are ...
 38-155 9.55e-50

Transmembrane protein 138; This family of proteins is found in eukaryotes and members are approximately 160 amino acids in length. There are two conserved sequence motifs: YYY and DPR. This transmembrane protein belongs to a family found in eukaryotes and is involved in the biogenesis and degradation of ciliated cells. Mutations in this protein cause the disease Joubert syndrome(JBTS) where the cilia becomes non-motile. Ciliopathy can be severe since cilia provide the cell with large amounts of information through signals. Ciliopathy can affect cell behaviour as the appropriate signals between the cell and its environment are not made, which can affect cell survival.


Pssm-ID: 434328  Cd Length: 119  Bit Score: 155.86  E-value: 9.55e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 242010174   38 QLVAFIFQDVFIVISLTVTLIGFFSTYVFQAGLVELLFDRFRLAILISVFYFIITIILHAWLLTIRWNNPNNFNWTDGLT 117
Cdd:pfam14935   1 LLVLFIIQDVCLILSLIVLLLSFFSTYVFQAGLVHLLLRKFRLTLITSVLYFILSISLHVWTLNLRWNNPNVFIWPDGLQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 242010174  118 IFFSCQRMFSPIYYYSTKRAMLRISDPRFYQSLDWISR 155
Cdd:pfam14935  81 ALFVLQRLVSVLYYYFYKRTALRLSDPRFYEDSDWIRE 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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