protein LOL1 isoform X1 [Vitis vinifera]
Protein Classification
LSD1-type zinc finger protein( domain architecture ID 12072765)
LSD1-type zinc finger protein similar to Oryza sativa LSD1 (protein LESION SIMULATING DISEASE 1) that functions as a negative regulator of programmed cell death and hypersensitive response (HR) and a positive regulator of callus differentiation
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| zf-LSD1 super family | cl26935 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
64-93 | 3.00e-06 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. The actual alignment was detected with superfamily member TIGR01053: Pssm-ID: 474871 Cd Length: 31 Bit Score: 41.67 E-value: 3.00e-06
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
105-127 | 3.15e-05 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. : Pssm-ID: 462045 Cd Length: 23 Bit Score: 38.61 E-value: 3.15e-05
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
28-50 | 1.97e-04 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. : Pssm-ID: 462045 Cd Length: 23 Bit Score: 36.68 E-value: 1.97e-04
|
||||||
| Name | Accession | Description | Interval | E-value | ||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
64-93 | 3.00e-06 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 41.67 E-value: 3.00e-06
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
67-89 | 5.37e-06 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 40.53 E-value: 5.37e-06
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
105-127 | 3.15e-05 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 38.61 E-value: 3.15e-05
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
28-50 | 1.97e-04 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 36.68 E-value: 1.97e-04
|
||||||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
25-55 | 3.54e-04 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 35.90 E-value: 3.54e-04
|
||||||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
102-132 | 1.43e-03 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 34.36 E-value: 1.43e-03
|
||||||
| Name | Accession | Description | Interval | E-value | ||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
64-93 | 3.00e-06 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 41.67 E-value: 3.00e-06
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
67-89 | 5.37e-06 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 40.53 E-value: 5.37e-06
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
105-127 | 3.15e-05 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 38.61 E-value: 3.15e-05
|
||||||
| zf-LSD1 | pfam06943 | LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. ... |
28-50 | 1.97e-04 | ||
LSD1 zinc finger; This family consists of several plant specific LSD1 zinc finger domains. Arabidopsis lsd1 mutants are hyper-responsive to cell death initiators and fail to limit the extent of cell death. Superoxide is a necessary and sufficient signal for cell death propagation. LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. LSD1 protein contains three zinc finger domains, defined by CxxCxRxxLMYxxGASxVxCxxC. It has been suggested that LSD1 defines a zinc finger protein subclass and that LSD1 regulates transcription, via either repression of a pro-death pathway or activation of an anti-death pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. Pssm-ID: 462045 Cd Length: 23 Bit Score: 36.68 E-value: 1.97e-04
|
||||||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
25-55 | 3.54e-04 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 35.90 E-value: 3.54e-04
|
||||||
| LSD1 | TIGR01053 | zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in ... |
102-132 | 1.43e-03 | ||
zinc finger domain, LSD1 subclass; This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC Pssm-ID: 130125 Cd Length: 31 Bit Score: 34.36 E-value: 1.43e-03
|
||||||
| Blast search parameters | ||||
|
