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Conserved domains on  [gi|219114256|ref|XP_002176299|]
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MPDC mevalonate diphosphate decarboxylase [Phaeodactylum tricornutum CCAP 1055/1]

Protein Classification

diphosphomevalonate decarboxylase( domain architecture ID 11476752)

diphosphomevalonate decarboxylase (DMD) that catalyzes the decarboxylation of mevalonate 5-diphosphate (MVAPP) to isopentenyl diphosphate (IPP)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PLN02407 PLN02407
diphosphomevalonate decarboxylase
9-357 0e+00

diphosphomevalonate decarboxylase


:

Pssm-ID: 178029  Cd Length: 343  Bit Score: 559.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256   9 IFLATVSAPTNIAVVKYWGKADEHYNTPINSSCSVTLHQDDLRAVTTVAVSKDFVQDRLWLNGVEVphAATSRRFRACVD 88
Cdd:PLN02407   1 VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGKEI--SLSGGRYQNCLR 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  89 GVLALApdkyhTDDDNNNKTVAIAQHEWPTLHVHVSSYNTFPTAAGLASSAAGYAALVAALVQLTGATETFPGEFSTLAR 168
Cdd:PLN02407  79 EIRARA-----TDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIAR 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256 169 QGSGSACRSLYGGLVAWHAGTADEQwRDSRAEQLADEASWPALRAVIAVVSDAQKDTASTAGMQASVKTSPLLAFRAAHV 248
Cdd:PLN02407 154 QGSGSACRSLYGGFVKWNMGKKEDG-SDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEV 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256 249 VPQRMQELTQAWRRRDFPVFGKITMQDSNQFHATCLDTYPPIFYMNDVSRQIIRIVTAYNDYAGEIRAAYTLDAGPNVVL 328
Cdd:PLN02407 233 VPKRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAVL 312
                        330       340       350
                 ....*....|....*....|....*....|.
gi 219114256 329 YVLEPHRPV--LAALLRHFFPASGLEEQNDE 357
Cdd:PLN02407 313 IALNRKVAAqlLQRLLYYFPPSSDTDLSSYV 343
 
Name Accession Description Interval E-value
PLN02407 PLN02407
diphosphomevalonate decarboxylase
9-357 0e+00

diphosphomevalonate decarboxylase


Pssm-ID: 178029  Cd Length: 343  Bit Score: 559.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256   9 IFLATVSAPTNIAVVKYWGKADEHYNTPINSSCSVTLHQDDLRAVTTVAVSKDFVQDRLWLNGVEVphAATSRRFRACVD 88
Cdd:PLN02407   1 VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGKEI--SLSGGRYQNCLR 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  89 GVLALApdkyhTDDDNNNKTVAIAQHEWPTLHVHVSSYNTFPTAAGLASSAAGYAALVAALVQLTGATETFPGEFSTLAR 168
Cdd:PLN02407  79 EIRARA-----TDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIAR 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256 169 QGSGSACRSLYGGLVAWHAGTADEQwRDSRAEQLADEASWPALRAVIAVVSDAQKDTASTAGMQASVKTSPLLAFRAAHV 248
Cdd:PLN02407 154 QGSGSACRSLYGGFVKWNMGKKEDG-SDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEV 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256 249 VPQRMQELTQAWRRRDFPVFGKITMQDSNQFHATCLDTYPPIFYMNDVSRQIIRIVTAYNDYAGEIRAAYTLDAGPNVVL 328
Cdd:PLN02407 233 VPKRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAVL 312
                        330       340       350
                 ....*....|....*....|....*....|.
gi 219114256 329 YVLEPHRPV--LAALLRHFFPASGLEEQNDE 357
Cdd:PLN02407 313 IALNRKVAAqlLQRLLYYFPPSSDTDLSSYV 343
MDD_C pfam18376
Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase ...
213-394 7.03e-92

Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase (EC:4.1.1.33) catalyzes the ATP dependent decarboxylation of mevalonate 5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. The reaction is required for production of polyisoprenoids and sterols from acetyl-CoA. This entry represents the C-terminal domain of the mevalonate 5-diphosphate decarboxylase enzyme which is a member of the GHMP kinase superfamily.


Pssm-ID: 465732  Cd Length: 186  Bit Score: 274.82  E-value: 7.03e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  213 AVIAVVSDAQKDTASTAGMQASVKTSPLLAFRAAHVVPQRMQELTQAWRRRDFPVFGKITMQDSNQFHATCLDTYPPIFY 292
Cdd:pfam18376   1 VLILVVSDEKKEVSSTSGMQRSVETSPLLKHRAEHVVPERMEAMEKAILAKDFETFAEITMKDSNQFHAVCLDTYPPIFY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  293 MNDVSRQIIRIVTAYNDYAGEIRAAYTLDAGPNVVLYVLEPHRPVLAALLRHFFPASGLEEQN---DEVLDPALVHAAEA 369
Cdd:pfam18376  81 LNDTSRAIIQLVHAYNEFAGRIKVAYTFDAGPNAVLYLLEKDVPKVLSLLKHFFPPSTNGDQFfkgLPVLPSELSEELKA 160
                         170       180
                  ....*....|....*....|....*.
gi 219114256  370 TGRVPRD-GDVRHYYVTRPGPGPRVL 394
Cdd:pfam18376 161 SLAMKPIpGGVKYIIHTKVGDGPRVL 186
MVD1 COG3407
Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate ...
12-393 1.09e-75

Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate pyrophosphate decarboxylase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 442633  Cd Length: 322  Bit Score: 238.17  E-value: 1.09e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  12 ATVSAPTNIAVVKYWGKADEHYNTPINSSCSVTLhqDDLRAVTTVAVSKDFVQDRLWLNGvEVPHAATSRRFRACVDGVL 91
Cdd:COG3407    6 ATARAHSNIALIKYWGKRDEELNLPANPSLSLTL--DAFYTTTTVEFDKDLAEDEFILNG-EPQKGKFLPKISKFLDRVR 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  92 ALAPDKYHtdddnnnktvaiaqhewptlhVHVSSYNTFPTaaglassaagyaalvaalvqLTGA------TETFPGEFST 165
Cdd:COG3407   83 ALAGKSYH---------------------ARIESENNFPTaaglass-------asgfaaLALAansaegLDLDDRKLSR 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256 166 LARQGSGSACRSLYGGLVAWHAGTADEqwrDSRAEQLADEAsWPaLRAVIAVVSDAQKDTASTAGMQaSVKTSPLLAFRA 245
Cdd:COG3407  135 LARLGSGSACRSIFGGFVEWGKGEDDE---DSYAVPIPAED-WD-LADIILVVDKGEKKVSSREGMK-TAETSPFYPAWV 208
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256 246 AHvVPQRMQELTQAWRRRDFPVFGKITMQDSNQFHATCLDTYPPIFYMNDVSRQIIRIVTAYndYAGEIRAAYTLDAGPN 325
Cdd:COG3407  209 EQ-AEEDLEKLKEAIKAGDFEALGEIAESNALRMHATMMTSNPPFIYWKPNTLEVINAVREL--REEGLPVYFTLDAGPN 285
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 219114256 326 VVLYVLEPHRPVLAALLRHFFPasgleeqndevldpalvhaaeatgrvprdgdVRHYYVTRPGPGPRV 393
Cdd:COG3407  286 VKVLCPEEDAEKVAAFLAAELV-------------------------------NGQVIVDKPGPGARL 322
mevDPdecarb TIGR01240
diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of ...
12-346 4.43e-72

diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of isopentenyl diphosphate (IPP) in the mevalonate pathway. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase [Central intermediary metabolism, Other]


Pssm-ID: 130307  Cd Length: 305  Bit Score: 228.68  E-value: 4.43e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256   12 ATVSAPTNIAVVKYWGKADEHYNTPINSSCSVTLhqDDLRAVTTVAVSKDFVQDRLWLNGVEvPHAATSRRFRACVDGVL 91
Cdd:TIGR01240   1 ASVTAYVNIATIKYWGKRNTKLNLPTNSSISLTL--SQLRTLTSVAFADEFERDTFYLNGTL-QHSIDNEKTSNCLDDFR 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256   92 ALAPDKyhtdddnnnktvaiaqhewptLHVHVSSYNTFPTAAGLASSAAGyaalvaaLVQLTGATETF------PGEFST 165
Cdd:TIGR01240  78 QLRKEQ---------------------EKLHIVSQNNFPTAAGLASSASG-------LAALVSACAKLyqlpldTSELSR 129
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  166 LARQGSGSACRSLYGGLVAWHAGTADEqwrDSRAEQLADEASWPALRAVIAVVSDAQKDTASTAGMQASVKTSPLLAFRA 245
Cdd:TIGR01240 130 IARKGSGSACRSLFGGYVAWEKGKDDH---SSAAVQVADDSDWPQ*AMCVLVVNDIKKDVSSRQGMQLTVATSELFKEWI 206
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  246 AHVVPQrMQELTQAWRRRDFPVFGKITMQDSNQFHATCLDTYPPIFYMNDVSRQIIRIVTAYNDyaGEIRAAYTLDAGPN 325
Cdd:TIGR01240 207 EHVVPD-FEV*RKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ--GGTICYFTMDAGPN 283
                         330       340
                  ....*....|....*....|.
gi 219114256  326 VVLYVLEPHRPVLAALLRHFF 346
Cdd:TIGR01240 284 VKVLYLAENLSKLFEFIYKLF 304
 
Name Accession Description Interval E-value
PLN02407 PLN02407
diphosphomevalonate decarboxylase
9-357 0e+00

diphosphomevalonate decarboxylase


Pssm-ID: 178029  Cd Length: 343  Bit Score: 559.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256   9 IFLATVSAPTNIAVVKYWGKADEHYNTPINSSCSVTLHQDDLRAVTTVAVSKDFVQDRLWLNGVEVphAATSRRFRACVD 88
Cdd:PLN02407   1 VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLWLNGKEI--SLSGGRYQNCLR 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  89 GVLALApdkyhTDDDNNNKTVAIAQHEWPTLHVHVSSYNTFPTAAGLASSAAGYAALVAALVQLTGATETFPGEFSTLAR 168
Cdd:PLN02407  79 EIRARA-----TDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIAR 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256 169 QGSGSACRSLYGGLVAWHAGTADEQwRDSRAEQLADEASWPALRAVIAVVSDAQKDTASTAGMQASVKTSPLLAFRAAHV 248
Cdd:PLN02407 154 QGSGSACRSLYGGFVKWNMGKKEDG-SDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEV 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256 249 VPQRMQELTQAWRRRDFPVFGKITMQDSNQFHATCLDTYPPIFYMNDVSRQIIRIVTAYNDYAGEIRAAYTLDAGPNVVL 328
Cdd:PLN02407 233 VPKRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGPNAVL 312
                        330       340       350
                 ....*....|....*....|....*....|.
gi 219114256 329 YVLEPHRPV--LAALLRHFFPASGLEEQNDE 357
Cdd:PLN02407 313 IALNRKVAAqlLQRLLYYFPPSSDTDLSSYV 343
MDD_C pfam18376
Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase ...
213-394 7.03e-92

Mevalonate 5-diphosphate decarboxylase C-terminal domain; Mevalonate diphosphate decarboxylase (EC:4.1.1.33) catalyzes the ATP dependent decarboxylation of mevalonate 5-diphosphate (MVAPP) to form isopentenyl 5-diphosphate. The reaction is required for production of polyisoprenoids and sterols from acetyl-CoA. This entry represents the C-terminal domain of the mevalonate 5-diphosphate decarboxylase enzyme which is a member of the GHMP kinase superfamily.


Pssm-ID: 465732  Cd Length: 186  Bit Score: 274.82  E-value: 7.03e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  213 AVIAVVSDAQKDTASTAGMQASVKTSPLLAFRAAHVVPQRMQELTQAWRRRDFPVFGKITMQDSNQFHATCLDTYPPIFY 292
Cdd:pfam18376   1 VLILVVSDEKKEVSSTSGMQRSVETSPLLKHRAEHVVPERMEAMEKAILAKDFETFAEITMKDSNQFHAVCLDTYPPIFY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  293 MNDVSRQIIRIVTAYNDYAGEIRAAYTLDAGPNVVLYVLEPHRPVLAALLRHFFPASGLEEQN---DEVLDPALVHAAEA 369
Cdd:pfam18376  81 LNDTSRAIIQLVHAYNEFAGRIKVAYTFDAGPNAVLYLLEKDVPKVLSLLKHFFPPSTNGDQFfkgLPVLPSELSEELKA 160
                         170       180
                  ....*....|....*....|....*.
gi 219114256  370 TGRVPRD-GDVRHYYVTRPGPGPRVL 394
Cdd:pfam18376 161 SLAMKPIpGGVKYIIHTKVGDGPRVL 186
MVD1 COG3407
Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate ...
12-393 1.09e-75

Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]; Mevalonate pyrophosphate decarboxylase is part of the Pathway/BioSystem: Isoprenoid biosynthesis


Pssm-ID: 442633  Cd Length: 322  Bit Score: 238.17  E-value: 1.09e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  12 ATVSAPTNIAVVKYWGKADEHYNTPINSSCSVTLhqDDLRAVTTVAVSKDFVQDRLWLNGvEVPHAATSRRFRACVDGVL 91
Cdd:COG3407    6 ATARAHSNIALIKYWGKRDEELNLPANPSLSLTL--DAFYTTTTVEFDKDLAEDEFILNG-EPQKGKFLPKISKFLDRVR 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  92 ALAPDKYHtdddnnnktvaiaqhewptlhVHVSSYNTFPTaaglassaagyaalvaalvqLTGA------TETFPGEFST 165
Cdd:COG3407   83 ALAGKSYH---------------------ARIESENNFPTaaglass-------asgfaaLALAansaegLDLDDRKLSR 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256 166 LARQGSGSACRSLYGGLVAWHAGTADEqwrDSRAEQLADEAsWPaLRAVIAVVSDAQKDTASTAGMQaSVKTSPLLAFRA 245
Cdd:COG3407  135 LARLGSGSACRSIFGGFVEWGKGEDDE---DSYAVPIPAED-WD-LADIILVVDKGEKKVSSREGMK-TAETSPFYPAWV 208
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256 246 AHvVPQRMQELTQAWRRRDFPVFGKITMQDSNQFHATCLDTYPPIFYMNDVSRQIIRIVTAYndYAGEIRAAYTLDAGPN 325
Cdd:COG3407  209 EQ-AEEDLEKLKEAIKAGDFEALGEIAESNALRMHATMMTSNPPFIYWKPNTLEVINAVREL--REEGLPVYFTLDAGPN 285
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 219114256 326 VVLYVLEPHRPVLAALLRHFFPasgleeqndevldpalvhaaeatgrvprdgdVRHYYVTRPGPGPRV 393
Cdd:COG3407  286 VKVLCPEEDAEKVAAFLAAELV-------------------------------NGQVIVDKPGPGARL 322
mevDPdecarb TIGR01240
diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of ...
12-346 4.43e-72

diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of isopentenyl diphosphate (IPP) in the mevalonate pathway. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase [Central intermediary metabolism, Other]


Pssm-ID: 130307  Cd Length: 305  Bit Score: 228.68  E-value: 4.43e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256   12 ATVSAPTNIAVVKYWGKADEHYNTPINSSCSVTLhqDDLRAVTTVAVSKDFVQDRLWLNGVEvPHAATSRRFRACVDGVL 91
Cdd:TIGR01240   1 ASVTAYVNIATIKYWGKRNTKLNLPTNSSISLTL--SQLRTLTSVAFADEFERDTFYLNGTL-QHSIDNEKTSNCLDDFR 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256   92 ALAPDKyhtdddnnnktvaiaqhewptLHVHVSSYNTFPTAAGLASSAAGyaalvaaLVQLTGATETF------PGEFST 165
Cdd:TIGR01240  78 QLRKEQ---------------------EKLHIVSQNNFPTAAGLASSASG-------LAALVSACAKLyqlpldTSELSR 129
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  166 LARQGSGSACRSLYGGLVAWHAGTADEqwrDSRAEQLADEASWPALRAVIAVVSDAQKDTASTAGMQASVKTSPLLAFRA 245
Cdd:TIGR01240 130 IARKGSGSACRSLFGGYVAWEKGKDDH---SSAAVQVADDSDWPQ*AMCVLVVNDIKKDVSSRQGMQLTVATSELFKEWI 206
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 219114256  246 AHVVPQrMQELTQAWRRRDFPVFGKITMQDSNQFHATCLDTYPPIFYMNDVSRQIIRIVTAYNDyaGEIRAAYTLDAGPN 325
Cdd:TIGR01240 207 EHVVPD-FEV*RKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ--GGTICYFTMDAGPN 283
                         330       340
                  ....*....|....*....|.
gi 219114256  326 VVLYVLEPHRPVLAALLRHFF 346
Cdd:TIGR01240 284 VKVLYLAENLSKLFEFIYKLF 304
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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