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Conserved domains on  [gi|159471686|ref|XP_001693987|]
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uncharacterized protein CHLRE_12g548400v5 [Chlamydomonas reinhardtii]

Protein Classification

chlorophyll a-b binding protein( domain architecture ID 10010583)

chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 1-249 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


:

Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 501.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   1 MAAIMKSAVRSSVRPTVSGRSARVVPR--------AAIEWYGPDRPKFLGPFSeGDTPAYLTGEFPGDYGWDTAGLSADP 72
Cdd:PLN00025   7 TAFAGQAALKPPNELSRKVGNGRVTMRktvakaagSGSIWYGPDRPKYLGPFS-GETPSYLTGEFPGDYGWDTAGLSADP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  73 ETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVM 152
Cdd:PLN00025  86 ETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 153 GLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLAN 232
Cdd:PLN00025 166 GAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 245

                        250
                 ....*....|....*..
gi 159471686 233 PTAVNAFAYATKFTPSA 249
Cdd:PLN00025 246 PVANNAWAYATNFVPGK 262
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 1-249 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 501.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   1 MAAIMKSAVRSSVRPTVSGRSARVVPR--------AAIEWYGPDRPKFLGPFSeGDTPAYLTGEFPGDYGWDTAGLSADP 72
Cdd:PLN00025   7 TAFAGQAALKPPNELSRKVGNGRVTMRktvakaagSGSIWYGPDRPKYLGPFS-GETPSYLTGEFPGDYGWDTAGLSADP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  73 ETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVM 152
Cdd:PLN00025  86 ETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 153 GLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLAN 232
Cdd:PLN00025 166 GAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 245

                        250
                 ....*....|....*..
gi 159471686 233 PTAVNAFAYATKFTPSA 249
Cdd:PLN00025 246 PVANNAWAYATNFVPGK 262
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
50-216 2.60e-65

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 200.23  E-value: 2.60e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   50 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPfGEAVWFKAGAQIFaegglny 129
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  130 lgnenliHAQSIIATLAFQ-VVVMGLAEAYRANGG---PLGEGLDPLHPGG-AFDPLGLA-DDPDTFAELKVKEIKNGRL 203
Cdd:pfam00504  74 -------HAQSVPTLLALQiLLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRL 146

                         170
                  ....*....|...
gi 159471686  204 AMFSMFGFFVQAI 216
Cdd:pfam00504 147 AMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 1-249 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 501.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   1 MAAIMKSAVRSSVRPTVSGRSARVVPR--------AAIEWYGPDRPKFLGPFSeGDTPAYLTGEFPGDYGWDTAGLSADP 72
Cdd:PLN00025   7 TAFAGQAALKPPNELSRKVGNGRVTMRktvakaagSGSIWYGPDRPKYLGPFS-GETPSYLTGEFPGDYGWDTAGLSADP 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  73 ETFKRYRELELIHARWAMLGALGCITPELLAKNGIPFGEAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAFQVVVM 152
Cdd:PLN00025  86 ETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 153 GLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLAN 232
Cdd:PLN00025 166 GAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 245

                        250
                 ....*....|....*..
gi 159471686 233 PTAVNAFAYATKFTPSA 249
Cdd:PLN00025 246 PVANNAWAYATNFVPGK 262
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 20-242 1.17e-70

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 219.29  E-value: 1.17e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  20 RSARVVPRAAIEWYGPDRPKFLGPFSEgDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITP 99
Cdd:PLN00171  91 KAAAQKARNESFWYGEERPRWLGPIPY-DYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIP 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 100 ELLAKNG-IPFGEAVWFKAGAQIFAEGGLNYLGNENL--IHAQSIIATLAFQVVVMGLAEAYRANGGplgEGLDPL---- 172
Cdd:PLN00171 170 EVLDLFGaVHFAEPVWWRVGYAKLQGDTLDYLGIPGLhiAGSQGVIVIAICQALLMVGPEYARYCGI---EALEPLgiyl 246

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 159471686 173 -----HPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYA 242
Cdd:PLN00171 247 pgdinYPGGAlFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
50-216 2.60e-65

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 200.23  E-value: 2.60e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   50 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIPfGEAVWFKAGAQIFaegglny 129
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  130 lgnenliHAQSIIATLAFQ-VVVMGLAEAYRANGG---PLGEGLDPLHPGG-AFDPLGLA-DDPDTFAELKVKEIKNGRL 203
Cdd:pfam00504  74 -------HAQSVPTLLALQiLLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRL 146

                         170
                  ....*....|...
gi 159471686  204 AMFSMFGFFVQAI 216
Cdd:pfam00504 147 AMIAFLGFFVQEL 159
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 8-237 4.78e-49

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 161.94  E-value: 4.78e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   8 AVRSSVRPTVSGRSARVVPRAAIE---WYGPDRPKFlgpFSEGDTPAYLTGEFPGDYGWDTAGLSaDPET---FKRYREL 81
Cdd:PLN00048  10 ALSSSAARSSSAKKARFVVRAEATppaKQGADRQLW---FASKQSLSYLDGTLPGDFGFDPLGLS-DPEGaggFIEPQWL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  82 ---ELIHARWAMLGALGCITPELLAKNG-IPFGEA-VWFKAGAqIFAEGGLNYLGNENLIhaqsiiatLAFQVVVMGLAE 156
Cdd:PLN00048  86 aygEVINGRFAMLGAAGAIAPEILGKAGlIPQETAlPWFQSGV-IPPAGTYDYWADPYTL--------FVLEMALMGFAE 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 157 AYRA----NGGPLGE----GL--------DPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 219
Cdd:PLN00048 157 HRRAqdyyKPGSMGKqyflGLekglggsgNPAYPGGPfFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTG 236

                        250
                 ....*....|....*...
gi 159471686 220 KGPIQNLDDHLANPTAVN 237
Cdd:PLN00048 237 VGPFQNLLDHLADPVNNN 254
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 12-233 3.77e-48

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 159.66  E-value: 3.77e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  12 SVRPTVSGRSARVV---PRAAIEWYGPDRPKFLGPFsegDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 88
Cdd:PLN00147  17 RDSSSHCTRSISSVaasSGGINPVVAQERPTWLPGL---DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRF 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  89 AMLGALGCITPELLAKNGIPfGEAVWFKAGAQIFaegglnylgnenliHAQSIIATLAFQVVVMGLAEAYR--------- 159
Cdd:PLN00147  94 AMAGVAGILFTDLLRVTGIR-NLPVWYEAGAVKF--------------EFASTRTLFVVQLLLMGFAETKRymdfvspgs 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 160 --ANGGPLG-----EGLDPLHPGGA-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLA 231
Cdd:PLN00147 159 qaKEGSFFGleaalEGLEPGYPGGPlFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLS 238


                 ..
gi 159471686 232 NP 233
Cdd:PLN00147 239 DP 240
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 1-239 1.15e-44

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 150.16  E-value: 1.15e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   1 MAAIMKSAVRSsVRPTVSGRSARVVPRAAIEWYGPDRPKFLgPFSEgdTPAYLTGEFPGDYGWDTAGLSADPETFKRYRE 80
Cdd:PLN00097   9 LAAGLKQKSRT-VRPRGVASKARASRGPGAVAAAADRPTWL-PGKA--AAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQ 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  81 LELIHARWAMLGALGCITPELLAKNGIPfGEAVWFKAGA-QIFAEGGlnylgnenlihaqsiiATLAF-QVVVMGLAEAY 158
Cdd:PLN00097  85 AELMHARWAMLGLAGCVAPELLTKIGMA-DLPNWIDAAKwDGYWAGA----------------GPLFFiQMAMFNWAEIR 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 159 R----ANGGPLGEglDPL-------------HPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 221
Cdd:PLN00097 148 RwqdmKAPGSMNE--DPLfgankgdtntdvgYPKGLFDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTG 225

                        250
                 ....*....|....*...
gi 159471686 222 PIQNLDDHLANPTAVNAF 239
Cdd:PLN00097 226 PVDNLFSHLADPGHNGIF 243
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 6-233 8.71e-44

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 147.87  E-value: 8.71e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   6 KSAVRSSVRPTVSGRSARVvpRAAIEWYgPDRPKflgpfsegdtPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIH 85
Cdd:PLN00099  23 KSKFASSVPLPNANGSSRV--TMSADWM-PGQPR----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIH 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  86 ARWAMLGALGCITPELLakngipfGEAVWFKAGAQIFAEGG-LNYLGNEnlIHAQSIIATLAFQVVVMGLAEAYRANGGp 164
Cdd:PLN00099  90 CRWAMLAVPGILVPEAL-------GLGNWVKAQEWAAIPGGqATYLGNP--VPWGTLPTILAIEFLAIAFVEHQRSMEK- 159

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 159471686 165 lgeglDP---LHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIQNLDDHLANP 233
Cdd:PLN00099 160 -----DPekkKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADP 227
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 1-239 7.93e-40

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 137.70  E-value: 7.93e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   1 MAAIMKSAVRSSVRPTVSGRS------ARVVPRAAIEWYGPDRPkflgpfsegdtPAYLTGEFPGDYGWDTAGLSADPET 74
Cdd:PLN00100   1 MASLTTASAGANRVRVSAGVSttrrprVRVAARARPMWYPGATA-----------PKYLDGTMAGDYGFDPLRLGANPET 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  75 FKRYRELELIHARWAMLgalgcitpellAKNGIPFGEAV----WFKAGAQIFAegglnyLGNENLIhaqsiiatlAFQVV 150
Cdd:PLN00100  70 LPYLQEAELMNGRWAMA-----------ATAGILFTDAVglpkFWEAGAEKYG------LDLQTLV---------LIQVV 123

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 151 VMGLAEAYRANG-GPLGE-GLDPLHPggaFDPLGLaDDPdtfaELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDD 228
Cdd:PLN00100 124 VMAVLEAARYRGfMKTGEsGVLSFFP---FDPTGM-DSP----EMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKA 195

                        250
                 ....*....|.
gi 159471686 229 HLANPTAVNAF 239
Cdd:PLN00100 196 HMANPGHVNIF 206
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 2-233 1.09e-35

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 127.98  E-value: 1.09e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   2 AAIMKSAVRSSVRPTVSGRSARVVPR--------------AAIEWYGPDRPKFlgpFSEGDTPAYLTGEFPGDYGWDTAG 67
Cdd:PLN00187   3 AAAAASSFMGTRVPDVASNSGRIVARfgfgkkkkaakkakKKSSKVGADRPLW---FPGAKAPEWLDGSLVGDYGFDPFG 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  68 LSADPETFK-------------------------------------------RYRELELIHARWAMLGALGCITPELLAk 104
Cdd:PLN00187  80 LGKPAEYLQfdldsldqnlaknlagdvigtrteaseikstpfqpysevfglqRFRECELIHGRWAMLATLGALSVEALT- 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 105 nGIpfgeaVWFKAGAQIFAEGGlNYLGNENLIhaqSIIATLAFQVVVMGLAEAYRanggplGEGLDP---LHPGGA-FDP 180
Cdd:PLN00187 159 -GV-----TWQDAGKVELVDGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NAELDPekrLYPGGKfFDP 222

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 159471686 181 LGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANP 233
Cdd:PLN00187 223 LGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 275
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 31-243 8.78e-35

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 125.41  E-value: 8.78e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  31 EWYGPDRPKFlgpFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGipFG 110
Cdd:PLN00098  56 EPLPPDRPLW---FPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG--FI 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 111 EAV-WFKAGAQifaegglNYLGNENLIhaqsiiatLAFQVVVMGLAEAYR-------------------ANGGPlgeglD 170
Cdd:PLN00098 131 ENFsWYDAGAR-------EYFADPTTL--------FVVQMVLMGWAEGRRwadlikpgcvdiepklpnkTNPKP-----D 190

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 159471686 171 PLHPGGA-FDPLGLA-DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANPTAVNAFAYAT 243
Cdd:PLN00098 191 VGYPGGLwFDPMMWGrGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFT 265
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 49-233 5.46e-32

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 117.71  E-value: 5.46e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  49 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIpFGEAVWFKAG-AQIFAEGGL 127
Cdd:PLN00101  62 SPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INAPQWYDAGkAEYFASSST 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 128 NYlgnenlihaqsIIATLAFQVVVMGLAEAYRaNGGPLGEglDPL------------HPGGAFDPLGLADDpdtfAELKV 195
Cdd:PLN00101 141 LF-----------VIEFILFHYVEIRRWQDIK-NPGSVNQ--DPIfkqyslppnevgYPGGIFNPLNFAPT----EEAKE 202

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 159471686 196 KEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLANP 233
Cdd:PLN00101 203 KELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 240
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 50-226 2.60e-20

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 86.91  E-value: 2.60e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  50 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPEllAKNGIPfgeavWFKAGAQ-----IFAE 124
Cdd:PLN00170  67 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGADpgaiaPFSF 139

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 125 GGLnyLGNENLI---------------HAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDT 189
Cdd:PLN00170 140 GSL--LGTQLLLmgwveskrwvdffnpDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEK 217

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 159471686 190 FAELKVKEIKNGRLAMFSMFGFFVQAiVTGKGPIQNL 226
Cdd:PLN00170 218 LERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 253
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 1-221 1.23e-07

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 50.84  E-value: 1.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686   1 MAAIMKSAVRSSVRPTVSGRSARVVPRAAIEWYGPDRPKFLGpfseGDTPAYLTGEFPGDYGWDTAGLSAD-PETFKRYR 79
Cdd:PLN00089   1 MKFAIFAALCASAAAAAPAQKSRTRPATPTAAAEDDCPGAIG----FAAKEFMFIGKTGSKKFDPLGLAEKvEEFLPWFR 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  80 ELELIHARWAMLGALGCITPELLAkngIPfGEAVWFKAGAQ-IFAEGGLnyLGNENLIHAQSIIATLAFQVVVMGLAEAY 158
Cdd:PLN00089  77 ESELKHGRAAMLAVAGFIAPDFVR---IP-GEAYSFAAIPKtIDAHDAL--LKSGAMIQIFAWIGFVDLAVSAPAAAAAA 150

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 159471686 159 RANGGPLGEGLDPLhpggAFDPlglaDDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 221
Cdd:PLN00089 151 EFDRTPGDFGFDLL----ALYP----KDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
178-221 6.46e-07

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 47.69  E-value: 6.46e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 159471686  178 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 221
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLG 58
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 174-215 1.58e-05

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 44.35  E-value: 1.58e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 159471686 174 PGGAFDPLGLADDPD--TFAELKVKEIKNGRLAMFSMFGFFVQA 215
Cdd:PLN00120  43 PLGFFDPLGLVDDGDqeKFDRLRYVEIKHGRISMLAVVGYLVTE 86
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 63-223 6.65e-03

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 36.64  E-value: 6.65e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686  63 WDTAGL--SADPETFKRYRELELIHARWAMLGALGCITPEllakNGIPFGEAVWFkAGAQiFAEGGLNYLGNENlIHAQS 140
Cdd:PLN00120  47 FDPLGLvdDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTE----AGIRLPGDIDY-SGTS-FSDIPNGFAALDA-IPTAG 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 159471686 141 IIATLAF----QVVVM----GLAEayranggplgegldplHPG----GAFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 208
Cdd:PLN00120 120 LLQILAFigflELAVMkditGEGE----------------FVGdfrnGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGI 183

                        170
                 ....*....|....*
gi 159471686 209 FGFFVQAIVTGKGPI 223
Cdd:PLN00120 184 LALMVHEQLGVELPI 198
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 54-102 9.11e-03

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 36.26  E-value: 9.11e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 159471686  54 TGEFPGD-------YGWDtaglSADPETFKRYRELELIHARWAMLGALGCITPELL 102
Cdd:PLN00120 141 EGEFVGDfrngyidFGWD----SFDEETKLKKRAIELNQGRAAQMGILALMVHEQL 192
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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