|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
1-459 |
0e+00 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 966.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 1 MRQGWLRSSAALLERVHGHLKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFPS 80
Cdd:PTZ00304 3 RAQGFLRLTASLLVRVHGGLKDQDRIFTNLYRDFDTYIDGALKRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFPS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 81 GLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARYGYIYIRGEFYNEWRSVEKAIH 160
Cdd:PTZ00304 83 GLKWSFMPKVKPDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAID 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 161 EAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETAMIASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTI 240
Cdd:PTZ00304 163 EAYKKGFLGKNACGSGYDFDVYVHRGAGAYICGEETALIESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 241 IRRGPQWFAQFGRKGNAGTKLFCISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICDD 320
Cdd:PTZ00304 243 LRRGPQWFASFGRPNNAGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLCVIPGGSSVPLIPKEICDN 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 321 ILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEIYTLWD 400
Cdd:PTZ00304 323 VLMDFDALKEVQSGLGTAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEE 402
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 157864056 401 VSKQMEGRSICALGTAAAWPVQGLIRHFKPLMEERIERFWEANPHWGQPGSPWRRWKTH 459
Cdd:PTZ00304 403 VSKQIEGHTICALGDAAAWPVQGLIRHFRPEIEERIERYWEANPHWGKSGSPWRRWKTH 461
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
25-436 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 651.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 25 RIFTNLYNDFGTGIDAAERRGDWYRTKDILLK-GHDWVINEIKASGLRGRGGAGFPSGLKWSFMPKKkQDDRPSYIVVNC 103
Cdd:TIGR01959 1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKD-DSPKPKYLVCNA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 104 DESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARYGYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWDFDLYT 183
Cdd:TIGR01959 80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 184 YRGAGAYICGEETAMIASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGTKLFC 263
Cdd:TIGR01959 160 HRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 264 ISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGWdNLLCVIPGGSSCPLIPKHICDDILMDYDALKEAQTGLGTAAVIVM 343
Cdd:TIGR01959 240 VSGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVM 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 344 DKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQG 423
Cdd:TIGR01959 319 DESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQS 398
|
410
....*....|...
gi 157864056 424 LIRHFKPLMEERI 436
Cdd:TIGR01959 399 AIKHFRDEFEAHI 411
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
21-437 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 651.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 21 KDQDRI-FTNLYNDFGTGIDAAERRGDWYRTKDILLK-GHDWVINEIKASGLRGRGGAGFPSGLKWSFMPKkkQDDRPSY 98
Cdd:COG1894 1 KKQTRVlLRNCGIIDPESLEDYIARGGYQALRKALTEmTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK--APGDPKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 99 IVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARYGYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWD 178
Cdd:COG1894 79 LVCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 179 FDLYTYRGAGAYICGEETAMIASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAG 258
Cdd:COG1894 159 FDIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 259 TKLFCISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGwDNLLCVIPGGSSCPLIPKHiCDDILMDYDALKEAQTGLGTA 338
Cdd:COG1894 239 TKLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAE-HLDTPMDYESLAAAGSMLGSG 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 339 AVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAA 418
Cdd:COG1894 317 GMIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAP 396
|
410
....*....|....*....
gi 157864056 419 WPVQGLIRHFKPLMEERIE 437
Cdd:COG1894 397 NPVLSTLKYFRDEFEAHIK 415
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
65-235 |
2.45e-56 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 184.25 E-value: 2.45e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 65 IKASGLRGRGGAGFPSGLKWSFMPKKKQDdrpsYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARYGYIYI 144
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPKKKIK----YLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 145 RGEFYNEWRSVEKAIHEAYEKGylgknacgsgwdFDLYTYRGAGAYICGEETAMIASIEGGqGKPRLKPpfPANVGLygc 224
Cdd:pfam01512 77 RDEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV--- 138
|
170
....*....|.
gi 157864056 225 ptTVTNCETVA 235
Cdd:pfam01512 139 --VVNNVETLA 147
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
350-395 |
1.78e-18 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 78.72 E-value: 1.78e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 157864056 350 INAIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEI 395
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
1-459 |
0e+00 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 966.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 1 MRQGWLRSSAALLERVHGHLKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFPS 80
Cdd:PTZ00304 3 RAQGFLRLTASLLVRVHGGLKDQDRIFTNLYRDFDTYIDGALKRGDWYRTKDILLKGHDWIIDEIKKSGLRGRGGAGFPS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 81 GLKWSFMPKKKQDDRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARYGYIYIRGEFYNEWRSVEKAIH 160
Cdd:PTZ00304 83 GLKWSFMPKVKPDGRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGALLAGFAMRARAAYIYIRGEFYNEARALQQAID 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 161 EAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETAMIASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTI 240
Cdd:PTZ00304 163 EAYKKGFLGKNACGSGYDFDVYVHRGAGAYICGEETALIESIEGKPGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTI 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 241 IRRGPQWFAQFGRKGNAGTKLFCISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICDD 320
Cdd:PTZ00304 243 LRRGPQWFASFGRPNNAGTKLFCISGHVNNPCTVEEEMSIPLRELIERHCGGVRGGWDNLLCVIPGGSSVPLIPKEICDN 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 321 ILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEIYTLWD 400
Cdd:PTZ00304 323 VLMDFDALKEVQSGLGTAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTPCREGTPWLVKMMERFVVGNADKEEIDTLEE 402
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 157864056 401 VSKQMEGRSICALGTAAAWPVQGLIRHFKPLMEERIERFWEANPHWGQPGSPWRRWKTH 459
Cdd:PTZ00304 403 VSKQIEGHTICALGDAAAWPVQGLIRHFRPEIEERIERYWEANPHWGKSGSPWRRWKTH 461
|
|
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
20-439 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 823.84 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 20 LKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFPSGLKWSFMPKKKqDDRPSYI 99
Cdd:PRK13596 2 LKDKDRIFTNLYGLQDWSLKGAKKRGDWDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKES-DGRPHYL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 100 VVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARYGYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWDF 179
Cdd:PRK13596 81 VVNADESEPGTCKDRDILRHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 180 DLYTYRGAGAYICGEETAMIASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGT 259
Cdd:PRK13596 161 DIYVHHGAGAYICGEETALLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 260 KLFCISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICDDILMDYDALKEAQTGLGTAA 339
Cdd:PRK13596 241 KLFCISGHVNKPCNVEEAMGIPFRELIEKHAGGVRGGWDNLLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 340 VIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAW 419
Cdd:PRK13596 321 VIVMDKSTDIIKAIARLSYFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIEGHTICALGDAAAW 400
|
410 420
....*....|....*....|
gi 157864056 420 PVQGLIRHFKPLMEERIERF 439
Cdd:PRK13596 401 PIQGLIRHFRPEIEERIDQY 420
|
|
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
14-442 |
0e+00 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 770.58 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 14 ERVHGHLKDQDRIFTNLYNDFGTGIDAAERRGDWYRTKDILLKGHDWVINEIKASGLRGRGGAGFPSGLKWSFMPKKkQD 93
Cdd:PLN03132 27 KTHFGGLKDEDRIFTNLYGLHDPFLKGAMKRGDWHRTKDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKV-SD 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 94 DRPSYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARYGYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNAC 173
Cdd:PLN03132 106 GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNAC 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 174 GSGWDFDLYTYRGAGAYICGEETAMIASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGR 253
Cdd:PLN03132 186 GSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGR 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 254 KGNAGTKLFCISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGWDNLLCVIPGGSSCPLIPKHICDDILMDYDALKEAQT 333
Cdd:PLN03132 266 KNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCGGVRGGWDNLLAIIPGGSSVPLLPKKICDDVLMDFDALKAVQS 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 334 GLGTAAVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICAL 413
Cdd:PLN03132 346 GLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPCREGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQIEGHTICAL 425
|
410 420
....*....|....*....|....*....
gi 157864056 414 GTAAAWPVQGLIRHFKPLMEERIERFWEA 442
Cdd:PLN03132 426 GDAAAWPVQGLIRHFRPELERRIKERAER 454
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
25-436 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 651.71 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 25 RIFTNLYNDFGTGIDAAERRGDWYRTKDILLK-GHDWVINEIKASGLRGRGGAGFPSGLKWSFMPKKkQDDRPSYIVVNC 103
Cdd:TIGR01959 1 VLTTNLDNPESWTLEEYEKRGGYDALRKALEEmSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKD-DSPKPKYLVCNA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 104 DESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARYGYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWDFDLYT 183
Cdd:TIGR01959 80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 184 YRGAGAYICGEETAMIASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAGTKLFC 263
Cdd:TIGR01959 160 HRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 264 ISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGWdNLLCVIPGGSSCPLIPKHICDDILMDYDALKEAQTGLGTAAVIVM 343
Cdd:TIGR01959 240 VSGHVNKPGNYELPLGTPLRELLEDYAGGMRGGW-KLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVM 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 344 DKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQG 423
Cdd:TIGR01959 319 DESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIEGKTICALGDAAAWPVQS 398
|
410
....*....|...
gi 157864056 424 LIRHFKPLMEERI 436
Cdd:TIGR01959 399 AIKHFRDEFEAHI 411
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
21-437 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 651.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 21 KDQDRI-FTNLYNDFGTGIDAAERRGDWYRTKDILLK-GHDWVINEIKASGLRGRGGAGFPSGLKWSFMPKkkQDDRPSY 98
Cdd:COG1894 1 KKQTRVlLRNCGIIDPESLEDYIARGGYQALRKALTEmTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPK--APGDPKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 99 IVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARYGYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWD 178
Cdd:COG1894 79 LVCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 179 FDLYTYRGAGAYICGEETAMIASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKGNAG 258
Cdd:COG1894 159 FDIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKG 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 259 TKLFCISGHVNRPCTVEEEMSMPLRELLERHAGGVRGGwDNLLCVIPGGSSCPLIPKHiCDDILMDYDALKEAQTGLGTA 338
Cdd:COG1894 239 TKLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGG-RKLKAVQPGGPSGGCLPAE-HLDTPMDYESLAAAGSMLGSG 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 339 AVIVMDKSTDVINAIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAA 418
Cdd:COG1894 317 GMIVMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIKGTSLCALGDAAP 396
|
410
....*....|....*....
gi 157864056 419 WPVQGLIRHFKPLMEERIE 437
Cdd:COG1894 397 NPVLSTLKYFRDEFEAHIK 415
|
|
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
46-438 |
8.18e-110 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 332.54 E-value: 8.18e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 46 DWYRTKD------ILLKG--HDWVINEIKASGLRGRGGAGFPSGLKWSFMPKKkQDDRPSYIVVNCDESEPGTCKDREIM 117
Cdd:PRK11278 28 DEYRSKNgyegarKALTGmsPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKD-ESMNIRYLLCNADEMEPGTYKDRLLM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 118 RHEPHKVVEGALLAGFAMRARYGYIYIRGEFYNEWRSVEKAIHEAYEKGYLGKNACGSGWDFDLYTYRGAGAYICGEETA 197
Cdd:PRK11278 107 EQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDFELFVHTGAGRYICGEETA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 198 MIASIEGGQGKPRLKPPFPANVGLYGCPTTVTNCETVAVSPTIIRRGPQWFAQFGRKG--NAGTKLFCISGHVNRPCTVE 275
Cdd:PRK11278 187 LINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKGKskDAGTKLMGFSGRVKNPGLWE 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 276 EEMSMPLRELLERHAGGVRGGWdNLLCVIPGGSSCP-LIPKHIcdDILMDYDALKEAQTGLGTAAVIVMDKSTDVINAIE 354
Cdd:PRK11278 267 LPFGTTAREILEDYAGGMRDGL-KFKAWQPGGAGTDfLTEAHL--DLPMEFESIGKAGSRLGTALAMAVDHEINMVSLVR 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 355 RLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEIYTLWDVSKQM-EGRSICALGTAAAWPVQGLIRHFKPLME 433
Cdd:PRK11278 344 NLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFREEFE 423
|
....*
gi 157864056 434 ERIER 438
Cdd:PRK11278 424 AGIKQ 428
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
65-235 |
2.45e-56 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 184.25 E-value: 2.45e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 65 IKASGLRGRGGAGFPSGLKWSFMPKKKQDdrpsYIVVNCDESEPGTCKDREIMRHEPHKVVEGALLAGFAMRARYGYIYI 144
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPKKKIK----YLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 145 RGEFYNEWRSVEKAIHEAYEKGylgknacgsgwdFDLYTYRGAGAYICGEETAMIASIEGGqGKPRLKPpfPANVGLygc 224
Cdd:pfam01512 77 RDEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGR-GVPRGKP--PADVGV--- 138
|
170
....*....|.
gi 157864056 225 ptTVTNCETVA 235
Cdd:pfam01512 139 --VVNNVETLA 147
|
|
| NADH_4Fe-4S |
pfam10589 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
352-435 |
1.78e-38 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 463160 [Multi-domain] Cd Length: 85 Bit Score: 134.91 E-value: 1.78e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 352 AIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEIYTLWDVSKQMEGRSICALGTAAAWPVQGLIRHFKPL 431
Cdd:pfam10589 2 VARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIKGRSLCGLGDGAANPVLSALRYFRDE 81
|
....
gi 157864056 432 MEER 435
Cdd:pfam10589 82 FEAH 85
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
350-395 |
1.78e-18 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 78.72 E-value: 1.78e-18
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 157864056 350 INAIERLSQFYMHESCGQCTPCREGSPWLDKMMKRFVNGNAKKEEI 395
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| RnfC |
COG4656 |
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ... |
61-142 |
2.51e-12 |
|
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443694 [Multi-domain] Cd Length: 451 Bit Score: 68.63 E-value: 2.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157864056 61 VINEIKASGLRGRGGAGFPSGLKWSFMPKKKQDdrpsYIVVNCDESEPG-TCKDReIMRHEPHKVVEGALLAGFAMRARY 139
Cdd:COG4656 124 IIERIREAGIVGLGGAGFPTHVKLSPPPDKKID----TLIINGAECEPYlTCDDR-LMRERAEEIIEGIRILMKALGAKK 198
|
...
gi 157864056 140 GYI 142
Cdd:COG4656 199 VII 201
|
|
| rnfC |
TIGR01945 |
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ... |
61-127 |
5.07e-07 |
|
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]
Pssm-ID: 273888 [Multi-domain] Cd Length: 435 Bit Score: 51.96 E-value: 5.07e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157864056 61 VINEIKASGLRGRGGAGFPSGLKWSFMPKKKQDdrpsYIVVNCDESEPG-TCKDReIMRHEPHKVVEG 127
Cdd:TIGR01945 124 ILEKIRAAGIVGLGGATFPTHVKLNPPPEKKIE----TLIINGAECEPYlTCDDR-LMRERAEEIIGG 186
|
|
| SLBB |
pfam10531 |
SLBB domain; |
262-311 |
7.47e-05 |
|
SLBB domain;
Pssm-ID: 463136 [Multi-domain] Cd Length: 56 Bit Score: 40.34 E-value: 7.47e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 157864056 262 FCISGHVNRPCTVEEEMSMPLRELLErHAGGVRGGWDNLLCVI----PGGSSCP 311
Cdd:pfam10531 2 VTVTGEVKRPGNYEVPIGTTLSDLIE-LAGGFTDDADLDINLRrlkrPGGPMMG 54
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
52-128 |
5.75e-04 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 42.63 E-value: 5.75e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 157864056 52 DILLKGHDWVINEIKASGLRGRGGAGFPSGLKWSfmPKkkqDDRPSYIVVNCDESEPG-TCKDReIMRHEPHKVVEGA 128
Cdd:PRK05035 121 DYRQLSPEELIERIRQAGIAGLGGAGFPTAVKLQ--PG---GDKIETLIINGAECEPYiTADDR-LMRERADEIIEGI 192
|
|
| |
