|
Name |
Accession |
Description |
Interval |
E-value |
| PRK07206 |
PRK07206 |
hypothetical protein; Provisional |
228-638 |
3.13e-37 |
|
hypothetical protein; Provisional
Pssm-ID: 180883 [Multi-domain] Cd Length: 416 Bit Score: 144.79 E-value: 3.13e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 228 AFGNNPATSrSSRQDKGHAQQVLKEAGLAYVRSYVTTRADEAVA-KVEDGTLLLPVVVKPNSGAGSEFVTLCHTVDDIRV 306
Cdd:PRK07206 95 QYSNDPALS-SARRNKAEMINALAEAGLPAARQINTADWEEAEAwLRENGLIDRPVVIKPLESAGSDGVFICPAKGDWKH 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 307 AFSMVKGvRTSQ-GTDAAQLVVEEYIEGPEYVVNTVSYQGVHVVTDVwesWKYPepvvttglTRSAEEAlrtagierqkq 385
Cdd:PRK07206 174 AFNAILG-KANKlGLVNETVLVQEYLIGTEYVVNFVSLDGNHLVTEI---VRYH--------KTSLNSG----------- 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 386 rkiSILYDRQTLITnlADLPATHSarrIVEYTLKCLDALGLQNGCGHSEVrldtrktarelrhheqrrlktnnplgkvkd 465
Cdd:PRK07206 231 ---STVYDYDEFLD--YSEPEYQE---LVDYTKQALDALGIKNGPAHAEV------------------------------ 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 466 eRLDEGEPILIELNSRMQGdIPRstdvigydqysllvyiseaVNVFGAATAASTALPFRVDSSRPQRVGEIPWPPVPRLY 545
Cdd:PRK07206 273 -MLTADGPRLIEIGARLDG-GLH-------------------PDVARLATGDSQLDATVESLADPDVFRETLREGYRLKA 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 546 RARPstgppmattvLFLATKEECILNGV-ALRTLTELGTFQRFTRTIfkpnQPGFVTPlrHTVDLFSSP-TSCVMQGPAA 623
Cdd:PRK07206 332 HVFN----------VFLISPAAGVFSNVeFLEEIQKLPSFKKSHIYV----KEGDYVP--QTVDLFSQPgTVYLVHKDKE 395
|
410
....*....|....*
gi 146091875 624 EVEADCAAIRSMESA 638
Cdd:PRK07206 396 QLWQDYEKIRKMESK 410
|
|
| AccC |
COG0439 |
Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway ... |
230-502 |
1.29e-36 |
|
Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway/BioSystem: Fatty acid biosynthesis
Pssm-ID: 440208 [Multi-domain] Cd Length: 263 Bit Score: 138.47 E-value: 1.29e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 230 GNNPATSRSSRqDKGHAQQVLKEAGLAYVRSYVTTRADEAVAKVEDgtLLLPVVVKPNSGAGSEFVTLCHTVDDIRVAFS 309
Cdd:COG0439 43 GPSPEAIRAMR-DKVLMREALAAAGVPVPGFALVDSPEEALAFAEE--IGYPVVVKPADGAGSRGVRVVRDEEELEAALA 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 310 MVKGVRTSQGTDAaQLVVEEYIEGPEYVVNTVSYQGVHVVTDVWESWKYPEPVVTTGLTrsaeealrtagierqkqrkis 389
Cdd:COG0439 120 EARAEAKAGSPNG-EVLVEEFLEGREYSVEGLVRDGEVVVCSITRKHQKPPYFVELGHE--------------------- 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 390 ilydrqtlitnladLPATHSA---RRIVEYTLKCLDALGLQNGCGHSEVRLDtrktarelrhheqrrlktnnplgkvkde 466
Cdd:COG0439 178 --------------APSPLPEelrAEIGELVARALRALGYRRGAFHTEFLLT---------------------------- 215
|
250 260 270
....*....|....*....|....*....|....*...
gi 146091875 467 rlDEGEPILIELNSRMQGD-IPRSTDVI-GYDQYSLLV 502
Cdd:COG0439 216 --PDGEPYLIEINARLGGEhIPPLTELAtGVDLVREQI 251
|
|
| PRK02186 |
PRK02186 |
argininosuccinate lyase; Provisional |
205-553 |
4.78e-15 |
|
argininosuccinate lyase; Provisional
Pssm-ID: 235010 [Multi-domain] Cd Length: 887 Bit Score: 79.51 E-value: 4.78e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 205 EDVVEALDGLEA---------EVPTCVYTRVNAFGNNPATSRSSRqDKGHAQQVLKEAGLAYVRSYVTTrADEAVAKVED 275
Cdd:PRK02186 62 HRFVSSLDGVAGimssseyfiEVASEVARRLGLPAANTEAIRTCR-DKKRLARTLRDHGIDVPRTHALA-LRAVALDALD 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 276 GtLLLPVVVKPNSGAGSEFVTLCHTVDDIRVAFSMVKGVRTSqgtdaaQLVVEEYIEGPEYVVNTVSYQGVHVVTDVWES 355
Cdd:PRK02186 140 G-LTYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALRRAGTR------AALVQAYVEGDEYSVETLTVARGHQVLGITRK 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 356 WKYPEP-VVTTGltrsaeealrtagierqkqrkisilydrqtlitnlADLPATHSA---RRIVEYTLKCLDALGLQNGCG 431
Cdd:PRK02186 213 HLGPPPhFVEIG-----------------------------------HDFPAPLSApqrERIVRTVLRALDAVGYAFGPA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 432 HSEVrldtrktarelrhheqrrlktnnplgkvkdeRLDEGEPILIELNSRMQGD-IPRSTD-VIGYDQYSLLVYISEAVN 509
Cdd:PRK02186 258 HTEL-------------------------------RVRGDTVVIIEINPRLAGGmIPVLLEeAFGVDLLDHVIDLHLGVA 306
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 146091875 510 VFGAATAA-STALPFRVdSSRPQRVGEIPWPPVPRLYRARPSTGP 553
Cdd:PRK02186 307 AFADPTAKrYGAIRFVL-PARSGVLRGLLFLPDDIAARPELRFHP 350
|
|
| DdlA |
COG1181 |
D-alanine-D-alanine ligase or related ATP-grasp enzyme [Cell wall/membrane/envelope biogenesis, ... |
173-342 |
1.95e-10 |
|
D-alanine-D-alanine ligase or related ATP-grasp enzyme [Cell wall/membrane/envelope biogenesis, General function prediction only]; D-alanine-D-alanine ligase or related ATP-grasp enzyme is part of the Pathway/BioSystem: Mureine biosynthesis
Pssm-ID: 440794 [Multi-domain] Cd Length: 303 Bit Score: 62.82 E-value: 1.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 173 ASGDGVVPALD--YVNARLCGESVQSLAQR---MGFD-----------ED-VVEALdgLE-AEVPtcvYTrvnafGNNPA 234
Cdd:COG1181 19 KSGRAVAAALDkaGYDVVPIGIDVEDLPAAlkeLKPDvvfpalhgrggEDgTIQGL--LElLGIP---YT-----GSGVL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 235 TSRSSRqDKGHAQQVLKEAGLAYVRSYVTTRADEAVAKVEDGTLLLPVVVKPNSGaGSEF-VTLCHTVDDIRVAFSmvkg 313
Cdd:COG1181 89 ASALAM-DKALTKRVLAAAGLPTPPYVVLRRGELADLEAIEEELGLPLFVKPARE-GSSVgVSKVKNAEELAAALE---- 162
|
170 180 190
....*....|....*....|....*....|...
gi 146091875 314 vrtsqgtDAAQ----LVVEEYIEGPEYvvnTVS 342
Cdd:COG1181 163 -------EAFKyddkVLVEEFIDGREV---TVG 185
|
|
| ddl |
PRK01372 |
D-alanine--D-alanine ligase; Reviewed |
242-338 |
6.21e-10 |
|
D-alanine--D-alanine ligase; Reviewed
Pssm-ID: 234948 [Multi-domain] Cd Length: 304 Bit Score: 61.28 E-value: 6.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 242 DKGHAQQVLKEAGLAYVRSYVTTRADEAVAKVEDgtLLLPVVVKPNSGaGSEF-VTLCHTVDDIRVAFSmvkgvrtsqgt 320
Cdd:PRK01372 98 DKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDK--LGLPLVVKPARE-GSSVgVSKVKEEDELQAALE----------- 163
|
90 100
....*....|....*....|..
gi 146091875 321 DAA----QLVVEEYIEGPEYVV 338
Cdd:PRK01372 164 LAFkyddEVLVEKYIKGRELTV 185
|
|
| PRK12767 |
PRK12767 |
carbamoyl phosphate synthase-like protein; Provisional |
241-342 |
2.13e-09 |
|
carbamoyl phosphate synthase-like protein; Provisional
Pssm-ID: 237195 [Multi-domain] Cd Length: 326 Bit Score: 59.90 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 241 QDKGHAQQVLKEAGLAYVRSYVTTRADEAVAKVEDGTLLLPVVVKPNSGAGSEFVTLCHTVDDIRVAFSMVKGvrtsqgt 320
Cdd:PRK12767 110 NDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYVPN------- 182
|
90 100
....*....|....*....|..
gi 146091875 321 daaqLVVEEYIEGPEYVVNTVS 342
Cdd:PRK12767 183 ----LIIQEFIEGQEYTVDVLC 200
|
|
| LysX |
COG0189 |
Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport ... |
231-339 |
1.55e-08 |
|
Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport and metabolism, Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis, Secondary metabolites biosynthesis, transport and catabolism]; Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily is part of the Pathway/BioSystem: Lysine biosynthesis
Pssm-ID: 439959 [Multi-domain] Cd Length: 289 Bit Score: 56.87 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 231 NNPATSRSSRqDKGHAQQVLKEAGLAYVRSYVTTRADEAVAKVEDgtLLLPVVVKPNSGAGSEFVTLCHTVDDIRVAfsm 310
Cdd:COG0189 86 NDPEAIRRAR-DKLFTLQLLARAGIPVPPTLVTRDPDDLRAFLEE--LGGPVVLKPLDGSGGRGVFLVEDEDALESI--- 159
|
90 100 110
....*....|....*....|....*....|....*
gi 146091875 311 vkgVRTSQGTDAAQLVVEEYIEGPE------YVVN 339
Cdd:COG0189 160 ---LEALTELGSEPVLVQEFIPEEDgrdirvLVVG 191
|
|
| ATP-grasp_4 |
pfam13535 |
ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent ... |
280-438 |
3.78e-06 |
|
ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Pssm-ID: 316093 [Multi-domain] Cd Length: 160 Bit Score: 47.66 E-value: 3.78e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 280 LPVVVKPNSGAGSEFVTLCHTVDDIRVAFSMVKGVRTSQ-------GTDAAQLVVEEYIEGPEYVVNT-VSYQGVHVVTD 351
Cdd:pfam13535 3 YPCVIKPSVGFFSVGVYKINNREEWKAAFAAIREEIEQWkemypeaVVDGGSFLVEEYIEGEEFAVDAyFDENGEPVILN 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 352 VWESWKYPEP-VVTTGLTRSAEealrtagIERQKQrkisilydrqtlitnladlpathsaRRIVEYTLKCLDALGLQNGC 430
Cdd:pfam13535 83 ILKHDFASSEdVSDRIYVTSAS-------IIRETQ-------------------------AAFTEFLKRINALLGLKNFP 130
|
....*...
gi 146091875 431 GHSEVRLD 438
Cdd:pfam13535 131 VHIELRVD 138
|
|
| PRK14016 |
PRK14016 |
cyanophycin synthetase; Provisional |
241-339 |
4.12e-05 |
|
cyanophycin synthetase; Provisional
Pssm-ID: 237586 [Multi-domain] Cd Length: 727 Bit Score: 47.07 E-value: 4.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 241 QDKGHAQQVLKEAGLAYVRSYVTTRADEAVAKVEDgtLLLPVVVKP---NSGAGsefVTL-CHTVDDIRVAFSmvkgVRT 316
Cdd:PRK14016 213 CDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEE--IGYPVVVKPldgNHGRG---VTVnITTREEIEAAYA----VAS 283
|
90 100
....*....|....*....|....*.
gi 146091875 317 SQGTDAaqlVVEEYIEGPEY---VVN 339
Cdd:PRK14016 284 KESSDV---IVERYIPGKDHrllVVG 306
|
|
| ATP-grasp_3 |
pfam02655 |
ATP-grasp domain; No functional information or experimental verification of function is known ... |
242-342 |
1.83e-04 |
|
ATP-grasp domain; No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).
Pssm-ID: 396979 [Multi-domain] Cd Length: 160 Bit Score: 42.76 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 242 DKGHAQQVLKEAGlayVRSYVTTRADEAVAKVEdgtlllPVVVKPNSGAGSEFVTLchtVDDIRVAFSMVKGVrtsqgtd 321
Cdd:pfam02655 3 DKLKTYKALKNAG---VPTPETLQAEELLREEK------KYVVKPRDGCGGEGVRK---VENGREDEAFIENV------- 63
|
90 100
....*....|....*....|.
gi 146091875 322 aaqlVVEEYIEGPEYVVNTVS 342
Cdd:pfam02655 64 ----LVQEFIEGEPLSVSLLS 80
|
|
| ddl |
PRK01966 |
D-alanine--D-alanine ligase; |
242-336 |
4.58e-04 |
|
D-alanine--D-alanine ligase;
Pssm-ID: 234993 [Multi-domain] Cd Length: 333 Bit Score: 43.19 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 242 DKGHAQQVLKEAGLAYVRSYVTTRADEAVAKVED--GTLLLPVVVKPNSgAGSEF-VTLCHTVDDIRVAFsmvkgvrtsq 318
Cdd:PRK01966 123 DKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEieAKLGLPVFVKPAN-LGSSVgISKVKNEEELAAAL---------- 191
|
90 100
....*....|....*....|...
gi 146091875 319 gtDAA-----QLVVEEYIEGPEY 336
Cdd:PRK01966 192 --DLAfeydrKVLVEQGIKGREI 212
|
|
| PurD |
COG0151 |
Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; ... |
243-351 |
8.11e-04 |
|
Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; Phosphoribosylamine-glycine ligase is part of the Pathway/BioSystem: Purine biosynthesis
Pssm-ID: 439921 [Multi-domain] Cd Length: 422 Bit Score: 42.69 E-value: 8.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 243 KGHAQQVLKEAG---LAYVrsyVTTRADEAVAKVEdgTLLLPVVVKPN---SGAGsefVTLCHTVDDIRVAFS--MVKGV 314
Cdd:COG0151 103 KAFAKEFMARYGiptAAYR---VFTDLEEALAYLE--EQGAPIVVKADglaAGKG---VVVAETLEEALAAVDdmLADGK 174
|
90 100 110
....*....|....*....|....*....|....*..
gi 146091875 315 RTSQGtdaAQLVVEEYIEGPEyvvntVSyqgVHVVTD 351
Cdd:COG0151 175 FGDAG---ARVVIEEFLEGEE-----AS---LFALTD 200
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
645-757 |
1.56e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 645 KAALFKLTSTIHETERLRENA----RIIDGRLRTMTEAYRHASAQAG--SSTDETADERREkdeqDTENDSCSSQHDLEA 718
Cdd:PRK02224 257 EAEIEDLRETIAETEREREELaeevRDLRERLEELEEERDDLLAEAGldDADAEAVEARRE----ELEDRDEELRDRLEE 332
|
90 100 110
....*....|....*....|....*....|....*....
gi 146091875 719 LRSSISSLQSELTWVTNNLAADDRQAQLLRTEfAKALAS 757
Cdd:PRK02224 333 CRVAAQAHNEEAESLREDADDLEERAEELREE-AAELES 370
|
|
| COG3919 |
COG3919 |
Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only]; |
241-340 |
2.04e-03 |
|
Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];
Pssm-ID: 443124 [Multi-domain] Cd Length: 382 Bit Score: 41.07 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 241 QDKGHAQQVLKEAGLAYVRSYVTTRADEAVAKVEDgtLLLPVVVKPNSGAGSEFVTLC-----HTVDDIRVAFSMVKGVR 315
Cdd:COG3919 116 LDKERFYELAEELGVPVPKTVVLDSADDLDALAED--LGFPVVVKPADSVGYDELSFPgkkkvFYVDDREELLALLRRIA 193
|
90 100
....*....|....*....|....*...
gi 146091875 316 TSQGTdaaqLVVEEYIEGP---EYVVNT 340
Cdd:COG3919 194 AAGYE----LIVQEYIPGDdgeMRGLTA 217
|
|
| Dala_Dala_lig_C |
pfam07478 |
D-ala D-ala ligase C-terminus; This family represents the C-terminal, catalytic domain of the ... |
249-335 |
5.50e-03 |
|
D-ala D-ala ligase C-terminus; This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Pssm-ID: 429483 [Multi-domain] Cd Length: 204 Bit Score: 38.84 E-value: 5.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 146091875 249 VLKEAGLAYVRSYVTTRAD------EAVAKVEdGTLLLPVVVKPnSGAGSEF-VTLCHTVDDIRVAFSmvkgvrtsqgtD 321
Cdd:pfam07478 1 LLKAAGLPVVPFVTFTRADwklnpkEWCAQVE-EALGYPVFVKP-ARLGSSVgVSKVESREELQAAIE-----------E 67
|
90
....*....|....*...
gi 146091875 322 AAQ----LVVEEYIEGPE 335
Cdd:pfam07478 68 AFQydekVLVEEGIEGRE 85
|
|
|