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Conserved domains on  [gi|125854798|ref|XP_001341792|]
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cell cycle regulator of non-homologous end joining [Danio rerio]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MRI super family cl25620
Modulator of retrovirus infection; MRI, or modulator of retrovirus infection, is a family of ...
 45-155 2.39e-03

Modulator of retrovirus infection; MRI, or modulator of retrovirus infection, is a family of eukaryotic proteins that regulate the activity of the proteasome in the uncoating of retroviruses.


The actual alignment was detected with superfamily member pfam15325:

Pssm-ID: 434635  Cd Length: 100  Bit Score: 35.54  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125854798   45 MNERELLETALDILKDETKMSRDAVQAPEEEEDEvkviPETDDEDSTDLHHSTRVSNiaEQEtvpyencveEKTNTKPDC 124
Cdd:pfam15325   1 MNEAELVDVALGILIEGRKQEKPLEQPALAGADK----PELSPTCSESPHTSSGSSS--EEE---------DSGKDAPPP 65

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 125854798  125 HLKPNSD--VSEPP--EKPDEDDEALKLVREIFFT 155
Cdd:pfam15325  66 GLSPSQGpgGSDSAcsRSPEEEEDVLKYVREIFFS 100
 
Name Accession Description Interval E-value
MRI pfam15325
Modulator of retrovirus infection; MRI, or modulator of retrovirus infection, is a family of ...
 45-155 2.39e-03

Modulator of retrovirus infection; MRI, or modulator of retrovirus infection, is a family of eukaryotic proteins that regulate the activity of the proteasome in the uncoating of retroviruses.


Pssm-ID: 434635  Cd Length: 100  Bit Score: 35.54  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125854798   45 MNERELLETALDILKDETKMSRDAVQAPEEEEDEvkviPETDDEDSTDLHHSTRVSNiaEQEtvpyencveEKTNTKPDC 124
Cdd:pfam15325   1 MNEAELVDVALGILIEGRKQEKPLEQPALAGADK----PELSPTCSESPHTSSGSSS--EEE---------DSGKDAPPP 65

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 125854798  125 HLKPNSD--VSEPP--EKPDEDDEALKLVREIFFT 155
Cdd:pfam15325  66 GLSPSQGpgGSDSAcsRSPEEEEDVLKYVREIFFS 100
 
Name Accession Description Interval E-value
MRI pfam15325
Modulator of retrovirus infection; MRI, or modulator of retrovirus infection, is a family of ...
 45-155 2.39e-03

Modulator of retrovirus infection; MRI, or modulator of retrovirus infection, is a family of eukaryotic proteins that regulate the activity of the proteasome in the uncoating of retroviruses.


Pssm-ID: 434635  Cd Length: 100  Bit Score: 35.54  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125854798   45 MNERELLETALDILKDETKMSRDAVQAPEEEEDEvkviPETDDEDSTDLHHSTRVSNiaEQEtvpyencveEKTNTKPDC 124
Cdd:pfam15325   1 MNEAELVDVALGILIEGRKQEKPLEQPALAGADK----PELSPTCSESPHTSSGSSS--EEE---------DSGKDAPPP 65

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 125854798  125 HLKPNSD--VSEPP--EKPDEDDEALKLVREIFFT 155
Cdd:pfam15325  66 GLSPSQGpgGSDSAcsRSPEEEEDVLKYVREIFFS 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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